Citrus Sinensis ID: 025154

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHIYLYPKFQNNNSFHTKRKLKIASSIIGVGEILILSKILPSAQKN
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHcccccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEccccccccHHHHccccccccccEEccHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccEEccEcccccHcccccccccEEEEEccccccccEEEEEcccccHHHHHHHHHHcccccEEEEEEccccccccHHHHcccccccccEEcccHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccEEEEEEEccccEcc
Coil and Loop (DISEMBL)
matlgcqfhcrmhhisqnvkakrfiscstnppqsniKVIINGAVKEIGRAAVIAVTKARGMEvagaidshsvgedigmvcdmeqpleipvmSDLTMVLGSISQSKARAVVIDftdastvydnVKQATAFGMRSVVYVPHIQLETVSALSAFCdkasmgcliaptlsIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHIylypkfqnnnsfhtKRKLKIASSIIGVGEILILSKILPSAQKN
Flexible Loop (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASfhyknveivesrpnarvRYMTRTLISMQVCLRHIYLYPKFQNNNSFHTKRKLKIASSIIGVgeililskilpsaqkn
Low Complexity Region (SEG)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHIYLYPKFQNNNSFHTKRKLKIASSIIGVGEILILSKILPSAQKN
Disordered region (IsUnstruct)
***LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHIYLYPKFQNNNSFHTKRKLKIASSIIGVGEILILSKIL******
Disordered Region (DISOPRED)
*********C***************************VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHIYL*********************IIGVGEILILSK*LPS****
Disordered Region (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHIYLYPKFQNNNSFHTKRKLKIASSIIGVGEILILSKILPSAQKN
Disordered Region (DISPRO)
**TLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHIYLYPKFQNNNSFHTKRKLKIASSIIGVGEILILSKILPSAQKN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHIYLYPKFQNNNSFHTKRKLKIASSIIGVGEILILSKILPSAQKN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q9FJ82	298	Putative 4-hydroxy-tetrah	yes	no	0.743	0.640	0.741	3e-78
P72642	275	4-hydroxy-tetrahydrodipic	N/A	no	0.844	0.789	0.376	4e-32
B8HRK9	275	4-hydroxy-tetrahydrodipic	yes	no	0.634	0.592	0.445	5e-32
B2J0A9	278	4-hydroxy-tetrahydrodipic	yes	no	0.669	0.618	0.404	1e-30
Q8YU19	278	4-hydroxy-tetrahydrodipic	yes	no	0.673	0.622	0.401	3e-30
B7KBV6	275	4-hydroxy-tetrahydrodipic	yes	no	0.669	0.625	0.411	3e-30
Q3MFY8	278	4-hydroxy-tetrahydrodipic	yes	no	0.673	0.622	0.395	4e-30
Q9S3W8	278	4-hydroxy-tetrahydrodipic	N/A	no	0.673	0.622	0.389	3e-29
Q10YI1	275	4-hydroxy-tetrahydrodipic	yes	no	0.766	0.716	0.369	4e-29
B7JW41	275	4-hydroxy-tetrahydrodipic	yes	no	0.665	0.621	0.408	1e-28

>sp|Q9FJ82|DAPB3_ARATH Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 146/197 (74%), Positives = 167/197 (84%), Gaps = 6/197 (3%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNA 195
           ASFHY NVE+VESRPNA
Sbjct: 177 ASFHYNNVELVESRPNA 193

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 6

>sp|P72642|DAPB_SYNY3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dapB PE=3 SV=1

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I V++NGA  ++GR  + AV +A  +++ GA+D +    G+DIG V  +  PLE+PV
Sbjct: 4   QDLIPVVVNGAAGKMGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIA-PLEVPV 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  VL   +Q K + V++DFT  S VYDNV+ A A+G+R VV    +  + +  L  
Sbjct: 63  LADLQSVLVLATQEKIQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGD 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVC 210
           F +KAS GCLIAP  +IG +L+QQAA+ A  ++ +VEI+E   N +    + T I     
Sbjct: 123 FAEKASTGCLIAPNFAIGVLLMQQAAVQACQYFDHVEIIELHHNQKADAPSGTAIKTAQM 182

Query: 211 LRHIYLYPKFQNNNSFHTKRKLKIASSIIGVGEILILSKILPS 253
           L  +    K  N  +   K  +  A   +G G+I I S  LP 
Sbjct: 183 LAEMG---KTFNPPAVEEKETIAGAKGGLGPGQIPIHSIRLPG 222

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B8HRK9|DAPB_CYAP4 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapB PE=3 SV=1

 Score =  138 bits (347), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 107/166 (64%), Gaps = 3/166 (1%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I VI+NGA  ++GR  V AV +A  + + GA+D +    G+DIG V  +  PLE+P+
Sbjct: 4   QGAIPVIVNGAAGKMGREVVKAVAQAADLTLFGAVDRNPSLQGQDIGEVVGI-GPLEVPL 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L + +Q     V++DFT  ++VYDNV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LADLQSLLVAAAQEPQAGVMVDFTHPNSVYDNVRMAIAYGVRPVVGTTGLSPEQIRDLAT 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR 196
           F DKASMGCLI P  SIG +LLQQAAI AS ++ +VEI+E   N +
Sbjct: 123 FADKASMGCLIIPNFSIGMVLLQQAAIQASQYFDHVEIIELHHNQK 168

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B2J0A9|DAPB_NOSP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapB PE=3 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 110/178 (61%), Gaps = 6/178 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---GEDIGMVCDMEQPLEIP 89
           Q+ I VI+NGA  ++GR  + AV +A  + + GAID HS+    +D G +  + +PLE+P
Sbjct: 4   QAPIPVIVNGAAGKMGREVIKAVAQAPDLNLVGAID-HSLEHQDKDAGELAGLSEPLEVP 62

Query: 90  VMSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
           + + L  +LG ++  +     V++DFT   +VYDN++ A A+G+R VV    +  E +  
Sbjct: 63  ITNQLEPMLGYVAGDRQSPPGVIVDFTHPDSVYDNIRSAIAYGIRPVVGTTGLSPEQIQD 122

Query: 148 LSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLI 205
           L+ F DKAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N +    + T I
Sbjct: 123 LADFADKASTGCLIIPNFSIGMVLLQQAAIAASKYFDHVEIIELHHNQKADAPSGTAI 180

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8YU19|DAPB_NOSS1 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dapB PE=3 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 4/177 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V AV +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAVAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLI 205
           + F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N +    + T I
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAI 180

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7KBV6|DAPB_CYAP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7424) GN=dapB PE=3 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 3/175 (1%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           +S I V++NGA  ++G+  + AV++A  M + GA+D +    GED G V     P+E+P+
Sbjct: 4   ESPIPVVVNGAAGKMGKEVIKAVSQAEDMMLVGAVDLNPKYRGEDAGEVAGC-GPVEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           + DL  VL   +Q K + V++DFT    VYDN++ A A+G+R VV    +  E +  L  
Sbjct: 63  LDDLQSVLVLATQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGE 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLI 205
           F +KAS GCLI P  SIG ILLQQAA+ AS ++ +VEI+E   N +    + T I
Sbjct: 123 FAEKASTGCLIVPNFSIGMILLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAI 177

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q3MFY8|DAPB_ANAVT 4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dapB PE=3 SV=1

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 108/177 (61%), Gaps = 4/177 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V A+ +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLI 205
           + F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N +    + T I
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAI 180

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9S3W8|DAPB_MASLA 4-hydroxy-tetrahydrodipicolinate reductase OS=Mastigocladus laminosus GN=dapB PE=3 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 106/177 (59%), Gaps = 4/177 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  + AV +A  M + GA+D++    G+D G V  + +P E+P+
Sbjct: 4   QTPIPVIVNGAAGKMGRETIKAVVQAADMTLMGAVDTNPEYQGKDAGEVAGLNEPTEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
              L  +L  ++  +     V++DFT    VYDNV+ A A+G+R VV    +  + +  L
Sbjct: 64  TDQLEPILAYVAGERHLQPGVMVDFTHPDAVYDNVRSAIAYGIRPVVGTTGLSSKQIEQL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLI 205
           + F +KAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N +    + T I
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAIAASQYFDHVEIIELHHNQKADAPSGTAI 180

Mastigocladus laminosus (taxid: 83541)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q10YI1|DAPB_TRIEI 4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=dapB PE=3 SV=1

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 113/203 (55%), Gaps = 6/203 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPV 90
           Q++  VI+ GA  ++GR  +  V  A  M + GAI+     +G+DIG +     PLE+P+
Sbjct: 4   QTSTPVIVCGAAGKMGREVIKTVANASDMTLLGAIECQPEYIGQDIGELIG-SGPLEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L   +Q K  AV++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LNDLQGILVMAAQEKQPAVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAE 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVC 210
           F +KAS+G LI P  SIG +LLQQAAI+AS H+ +VEI+E   N +    + T I     
Sbjct: 123 FAEKASIGTLIIPNFSIGMVLLQQAAIAASKHFDHVEIIELHHNQKADAPSGTAIKTAQM 182

Query: 211 LRHI---YLYPKFQNNNSFHTKR 230
           L  +   Y  P  +        R
Sbjct: 183 LSELGKTYNVPNVEETEKIEGAR 205

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7JW41|DAPB_CYAP8 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 8801) GN=dapB PE=3 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 106/174 (60%), Gaps = 3/174 (1%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM 91
           S I V++NGA  ++GR  V AV +A  M + GA+D +    G+D+G V      LE+P++
Sbjct: 5   SLIPVVVNGAAGKMGREVVKAVAQAEDMMLVGAVDYNPNYRGQDVGEVAGC-GALEVPIV 63

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL  +L   +Q K + V++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ F
Sbjct: 64  DDLQSILVLATQEKIQGVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLTEEQLKDLADF 123

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLI 205
            DKAS GCL+ P  SIG +LLQQAA+ AS ++ +VEI+E   N +    + T I
Sbjct: 124 ADKASTGCLVIPNFSIGMVLLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAI 177

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
224136862	300	predicted protein [Populus trichocarpa]	0.754	0.646	0.788	4e-85
356575925	301	PREDICTED: putative dihydrodipicolinate	0.758	0.647	0.761	1e-80
225455455	302	PREDICTED: putative dihydrodipicolinate	0.747	0.635	0.772	1e-80
255539549	300	dihydrodipicolinate reductase, putative	0.793	0.68	0.704	2e-80
357444055	302	Dihydrodipicolinate reductase [Medicago	0.758	0.645	0.757	4e-80
297741105	303	unnamed protein product [Vitis vinifera]	0.747	0.633	0.768	3e-79
449446063	300	PREDICTED: putative dihydrodipicolinate	0.762	0.653	0.734	2e-78
356535900	301	PREDICTED: putative dihydrodipicolinate	0.758	0.647	0.720	3e-77
15242275	298	putative dihydrodipicolinate reductase 3	0.743	0.640	0.741	2e-76
297792539	298	dihydrodipicolinate reductase family pro	0.743	0.640	0.741	1e-75

>gi|224136862|ref|XP_002322434.1| predicted protein [Populus trichocarpa] gi|222869430|gb|EEF06561.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 170/194 (87%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C FH  +H +S+NV  + FISCS  P QSNIKV+INGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHFHFTVHKVSKNVITRPFISCSMQPSQSNIKVVINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG +CDME+PLEIP+++DLTMVLGSISQSK   VV+DFTD STVY
Sbjct: 61  MEVAGAVDSHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQSKETGVVVDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           DNVKQATAFGMRSVVYVP I+L++V ALSAFCDKASMGCLIAPTLSIGSILLQQAAI+AS
Sbjct: 121 DNVKQATAFGMRSVVYVPRIKLDSVGALSAFCDKASMGCLIAPTLSIGSILLQQAAITAS 180

Query: 181 FHYKNVEIVESRPN 194
           FHY N EIVES+ N
Sbjct: 181 FHYNNAEIVESKAN 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575925|ref|XP_003556086.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/197 (76%), Positives = 171/197 (86%), Gaps = 2/197 (1%)

Query: 1   MATLGCQFHCRMHHISQNV--KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQFH      S+NV  + KRFI CS  P Q+NIKV+INGA KEIGRAAV+AVTKA
Sbjct: 1   MASLSCQFHSTSLLNSKNVNRRRKRFIFCSAQPTQNNIKVVINGATKEIGRAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  VGEDIG +C ME+PLEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHVGEDIGKICGMEEPLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFCDKASMG L+APTLSIGSILLQQAAIS
Sbjct: 121 VYDNVKQATAFGMKSVVYVPQIKLDTVAALSAFCDKASMGVLVAPTLSIGSILLQQAAIS 180

Query: 179 ASFHYKNVEIVESRPNA 195
           ASFHY NVEIVESR NA
Sbjct: 181 ASFHYSNVEIVESRANA 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455455|ref|XP_002274702.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic [Vitis vinifera] gi|147816661|emb|CAN68386.1| hypothetical protein VITISV_012454 [Vitis vinifera]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 168/193 (87%), Gaps = 1/193 (0%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQSKA  VV+DFTD STVY
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQSKATGVVVDFTDPSTVY 122

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           +NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 123 ENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASMGCLVAPTLSIGSILLQQAAISAS 182

Query: 181 FHYKNVEIVESRP 193
           FHY NVEIVESRP
Sbjct: 183 FHYNNVEIVESRP 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539549|ref|XP_002510839.1| dihydrodipicolinate reductase, putative [Ricinus communis] gi|223549954|gb|EEF51441.1| dihydrodipicolinate reductase, putative [Ricinus communis]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 148/210 (70%), Positives = 172/210 (81%), Gaps = 6/210 (2%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C     +     NVKAK FI CS  P +SNIKV++NGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHLQFTVSKGCSNVKAKPFIFCSAQPAKSNIKVVVNGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+D+H VGED+G++CDME+PLEIPV++DLTMVLGSISQSK   VVIDFTD STVY
Sbjct: 61  MEVAGAVDTHFVGEDVGLLCDMEEPLEIPVINDLTMVLGSISQSKETGVVIDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           DNVKQATAFGM+S+VYVP I+++T++ALSA C+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 121 DNVKQATAFGMKSIVYVPRIKVDTIAALSALCEKASMGCLVAPTLSIGSILLQQAAISAS 180

Query: 181 FHYKNVEIVESR------PNARVRYMTRTL 204
           FHY NVEIVESR      P+A    + + L
Sbjct: 181 FHYNNVEIVESRAHGADLPSADANQIAKNL 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444055|ref|XP_003592305.1| Dihydrodipicolinate reductase [Medicago truncatula] gi|355481353|gb|AES62556.1| Dihydrodipicolinate reductase [Medicago truncatula]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 150/198 (75%), Positives = 171/198 (86%), Gaps = 3/198 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSISQSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 177
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASMG L+APTLSIGSILLQQAAI
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAI 180

Query: 178 SASFHYKNVEIVESRPNA 195
           SASFHY+NVEIVES+ NA
Sbjct: 181 SASFHYRNVEIVESKANA 198

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741105|emb|CBI31836.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 149/194 (76%), Positives = 168/194 (86%), Gaps = 2/194 (1%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ-SKARAVVIDFTDASTV 119
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQ SKA  VV+DFTD STV
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQQSKATGVVVDFTDPSTV 122

Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179
           Y+NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASMGCL+APTLSIGSILLQQAAISA
Sbjct: 123 YENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASMGCLVAPTLSIGSILLQQAAISA 182

Query: 180 SFHYKNVEIVESRP 193
           SFHY NVEIVESRP
Sbjct: 183 SFHYNNVEIVESRP 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446063|ref|XP_004140791.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/196 (73%), Positives = 167/196 (85%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MATLGCQF   ++  S+  +    I CS  P Q NIKVIINGA KEIGRAAVIAVTKARG
Sbjct: 1   MATLGCQFPFTVYKNSKKKRPGSSILCSVQPSQGNIKVIINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG VCDME+PLE+P+++DLTMVLGSISQSK   VV+DFT+ S VY
Sbjct: 61  MEVAGAVDSHCVGEDIGKVCDMEEPLELPILNDLTMVLGSISQSKETGVVVDFTEPSKVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           +NVKQATAFGMRSVVYVP ++++TV+ALS FC+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 121 ENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASMGCLVAPTLSIGSILLQQAAISAS 180

Query: 181 FHYKNVEIVESRPNAR 196
           FHY N+EIVES  +A+
Sbjct: 181 FHYSNIEIVESTAHAQ 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535900|ref|XP_003536480.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 169/197 (85%), Gaps = 2/197 (1%)

Query: 1   MATLGCQFHCR--MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQ H    ++  + N + KR ISCS  P Q+NIKV+INGA KEIG+AAV+AVTKA
Sbjct: 1   MASLSCQVHSTNLLNSKNANSRRKRLISCSAQPTQNNIKVVINGATKEIGKAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  +GEDIG +C ME+ LEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHIGEDIGKICGMEELLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VYDNVKQATAFGM+S+VYVP I+L+TV+ALSAFC+KASMG L+APTLSIGSILLQQAAIS
Sbjct: 121 VYDNVKQATAFGMKSIVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAIS 180

Query: 179 ASFHYKNVEIVESRPNA 195
           ASFHY NVEIVESR NA
Sbjct: 181 ASFHYSNVEIVESRANA 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242275|ref|NP_200023.1| putative dihydrodipicolinate reductase 3 [Arabidopsis thaliana] gi|75262543|sp|Q9FJ82.1|DAPB3_ARATH RecName: Full=Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic; Short=HTPA reductase 3; Flags: Precursor gi|10177745|dbj|BAB11058.1| dihydrodipicolinate reductase-like protein [Arabidopsis thaliana] gi|124301156|gb|ABN04830.1| At5g52100 [Arabidopsis thaliana] gi|332008788|gb|AED96171.1| putative dihydrodipicolinate reductase 3 [Arabidopsis thaliana]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/197 (74%), Positives = 167/197 (84%), Gaps = 6/197 (3%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNA 195
           ASFHY NVE+VESRPNA
Sbjct: 177 ASFHYNNVELVESRPNA 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792539|ref|XP_002864154.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297309989|gb|EFH40413.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/197 (74%), Positives = 166/197 (84%), Gaps = 6/197 (3%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAVIAVTKA
Sbjct: 1   MAAVNCHFF----KLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVIAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+  VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNRFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDLST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNA 195
           ASFHY NVE+VESRPNA
Sbjct: 177 ASFHYNNVELVESRPNA 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2173043	298	CRR1 "chlororespiration reduct	0.727	0.627	0.756	7.7e-71
TIGR_CMR|CHY_1151	263	CHY_1151 "dihydrodipicolinate	0.673	0.657	0.264	2e-09
TIGR_CMR|CBU_1709	239	CBU_1709 "dihydrodipicolinate	0.459	0.493	0.293	3.1e-09
TIGR_CMR|BA_1555	266	BA_1555 "dihydrodipicolinate r	0.583	0.563	0.258	5.2e-08
UNIPROTKB|P63895	255	dapB "4-hydroxy-tetrahydrodipi	0.548	0.552	0.299	1.4e-07
TIGR_CMR|DET_0971	263	DET_0971 "dihydrodipicolinate	0.575	0.562	0.245	2.6e-06

TAIR|locus:2173043 CRR1 "chlororespiration reduction 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 143/189 (75%), Positives = 164/189 (86%)

Query:     9 HCRMHHISQNVKAKR-FISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66
             +C    +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKARGME+AGA
Sbjct:     5 NCHFFQLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKARGMELAGA 64

Query:    67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA 126
             +D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD STVY+NVKQA
Sbjct:    65 VDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPSTVYENVKQA 124

Query:   127 TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV 186
             TAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I ASFHY NV
Sbjct:   125 TAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIMASFHYNNV 184

Query:   187 EIVESRPNA 195
             E+VESRPNA
Sbjct:   185 ELVESRPNA 193

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=IMP

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|CHY_1151 CHY_1151 "dihydrodipicolinate reductase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 155 (59.6 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 47/178 (26%), Positives = 86/178 (48%)

Query:    37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
             ++++ GA  ++GR     +      E+ G +D  +VG+D G +  + + L   V  +L  
Sbjct:     3 RIVMLGACGKMGREISKNLLMHSEHELVGFVDVVNVGQDFGEILGISR-LGKTVEDNLKE 61

Query:    97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156
             V+   +      +V+DF+ AS  + N+  A    +R V        E +  +    +  +
Sbjct:    62 VILKTNPE----IVLDFSRASGAFTNILIALENKVRVVSGTTGFSQEQIKKIEDVSNANN 117

Query:   157 MGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHI 214
             +GC+IAP  SIG++LL + A  A+ ++ +VEI+E   N +V   + T I     L  I
Sbjct:   118 LGCIIAPNFSIGALLLMKLAQMAAKYFSHVEIIEYHHNLKVDAPSGTAIKTAELLSSI 175

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|CBU_1709 CBU_1709 "dihydrodipicolinate reductase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 143 (55.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
 Identities = 37/126 (29%), Positives = 64/126 (50%)

Query:    88 IPVMSDLTMVLGSISQSK-ARA-------VVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139
             I   SDL +V G+  Q   A+        VVIDFT   +V+ N +     G R V+    
Sbjct:    22 ITAQSDLELVSGTGRQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTG 81

Query:   140 IQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRY 199
             + LE ++ L   C    +G ++AP  S+G++L+ + A  A+ ++ +VEI+E   + ++  
Sbjct:    82 LTLEQIALLDKQCRNKKLGAIVAPNFSVGAVLMMKYAKEAAHYFPDVEIIEMHHSQKIDA 141

Query:   200 MTRTLI 205
              + T I
Sbjct:   142 PSGTAI 147

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|BA_1555 BA_1555 "dihydrodipicolinate reductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 144 (55.7 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 40/155 (25%), Positives = 76/155 (49%)

Query:    36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
             +KVII G    +G  AV+ + +     +  A+D    GE I  +  M   L+  + +DL 
Sbjct:     4 MKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPA-LDATIYADLH 62

Query:    96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
               L  +       V++D T       +V  A   G+RSV+       E +  L+    + 
Sbjct:    63 TCLEEVEAD----VLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEK 118

Query:   156 SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE 190
             ++G +IAP  +IG++L+ + +  A+ ++++VE++E
Sbjct:   119 AVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIE 153

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P63895 dapB "4-hydroxy-tetrahydrodipicolinate reductase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 140 (54.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 47/157 (29%), Positives = 73/157 (46%)

Query:    35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSD 93
             +I+VII G   ++G+AA   V     +++   +D   S  E  G          IPV  D
Sbjct:     2 SIRVIIAGFKGKMGQAACQMVLTDPDLDLVAVLDPFESESEWQG----------IPVFKD 51

Query:    94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
                + G  +      V +DFT  +  Y+N + A   G   VV       E ++ L  F  
Sbjct:    52 KADLAGFEAD-----VWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSR 106

Query:   154 KASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE 190
                +G LIAP  ++G++LL Q A  A+ ++ NVEI+E
Sbjct:   107 AQDLGGLIAPNFALGAVLLMQFATQAAKYFPNVEIIE 143

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|DET_0971 DET_0971 "dihydrodipicolinate reductase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 130 (50.8 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 38/155 (24%), Positives = 75/155 (48%)

Query:    36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
             IKV+++GA  ++G+  +  + +   +   GA+D  +    + +    +    IP  +DL+
Sbjct:     4 IKVVVHGASGKMGQEVLKTLCQENNLLPVGAVDIRAKSPALPLP---DGSGSIPYSADLS 60

Query:    96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
              VL   SQ+K   V++DFT A      ++ A A  +  V+       E +S +       
Sbjct:    61 SVL---SQTKPD-VMVDFTIAKASMPAIRIAAAHKVNLVIGTTGFSPEEISEIEQLAKTN 116

Query:   156 SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE 190
              +G ++AP  ++G+I++   A  AS    + E++E
Sbjct:   117 DIGIIVAPNFALGAIIMVHLAQEASRFLASAEVIE 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.132   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      257       257   0.00086  114 3  11 22  0.40    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.79u 0.09s 19.88t   Elapsed:  00:00:01
  Total cpu time:  19.79u 0.09s 19.88t   Elapsed:  00:00:01
  Start:  Thu May  9 18:25:08 2013   End:  Thu May  9 18:25:09 2013

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJ82	DAPB3_ARATH	1, ., 3, ., 1, ., 2, 6	0.7411	0.7431	0.6409	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	LOW CONFIDENCE prediction!
3rd Layer	1.3.1.26	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XV0419	hypothetical protein (301 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0035005702	dihydrodipicolinate synthase (EC-4.2.1.52) (363 aa)	•					•	•		0.977
	estExt_fgenesh4_pg.C_LG_II1351	dihydrodipicolinate synthase (EC-4.2.1.52) (366 aa)	•					•	•		0.971
	gw1.IX.2730.1	SubName- Full=Putative uncharacterized protein; (406 aa)						•	•		0.907
	estExt_Genewise1_v1.C_LG_II0973	hypothetical protein (397 aa)						•	•		0.906
	fgenesh4_pm.C_scaffold_57000049	hypothetical protein (397 aa)						•	•		0.905
	fgenesh4_pg.C_LG_VII001193	hypothetical protein (397 aa)						•	•		0.904
	gw1.9962.1.1	hypothetical protein (394 aa)						•	•		0.904
	estExt_Genewise1_v1.C_1700073	dihydrodipicolinate reductase (EC-1.3.1.26) (283 aa)						•	•		0.850
	gw1.XVI.3802.1	diaminopimelate epimerase (EC-5.1.1.7) (281 aa)							•		0.571
	eugene3.00090483	diaminopimelate decarboxylase (EC-4.1.1.20) (482 aa)	•						•		0.523

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
TIGR00036	266	TIGR00036, dapB, dihydrodipicolinate reductase	3e-23
COG0289	266	COG0289, DapB, Dihydrodipicolinate reductase [Amin	5e-16
PRK00048	257	PRK00048, PRK00048, dihydrodipicolinate reductase;	8e-16
pfam01113	122	pfam01113, DapB_N, Dihydrodipicolinate reductase,	1e-11

>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase

 Score = 94.8 bits (236), Expect = 3e-23
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 12/161 (7%)

Query: 35  NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVM 91
            IKV + GA   +GR  + A   A G+++  A + H     G D G +  +   + +PV 
Sbjct: 1   TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVT 59

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL       +      V+IDFT    V +++K A   G+R VV       E    L+  
Sbjct: 60  DDLE------AVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADL 113

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV--EIVE 190
            +KA +  +IAP  SIG  L+ +    A+ +  +   EI+E
Sbjct: 114 AEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEIIE 154

[Amino acid biosynthesis, Aspartate family]. Length = 266

>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]

 Score = 75.0 bits (185), Expect = 5e-16
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 14/162 (8%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S IKV + GA   +GR  + AV +A  +E+  A D   S S+G D G +  +   L +PV
Sbjct: 1   SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPV 59

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
             DL +V           V+IDFT      +N++ A   G   V+       E +  L  
Sbjct: 60  TDDLLLVK------ADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLRE 113

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISAS--FHYKNVEIVE 190
             +K  +  +IAP  S+G  LL + A  A+      ++EI+E
Sbjct: 114 AAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEIIE 153

Length = 266

>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional

 Score = 74.4 bits (184), Expect = 8e-16
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           IKV + GA   +GR  + AV  A  +E+  A+D                   + +  DL 
Sbjct: 2   IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALG------VAITDDLE 55

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALSAF 151
            VL          V+IDFT      +N++ A   G   V+    +    QL  +      
Sbjct: 56  AVLADAD------VLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEE-QLAELEEA--- 105

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISAS--FHYKNVEIVE 190
                +  +IAP  SIG  LL + A  A+      ++EI+E
Sbjct: 106 --AKKIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIE 144

Length = 257

>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 22/135 (16%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPVMS 92
           IKV + GA   +GR  + A+ +A   E+  A+D   S  +G D G +        +PV  
Sbjct: 1   IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPL---GVPVTD 57

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSAL 148
           DL  VL          V+IDFT      +N++ A   G   V+    +    QL  +   
Sbjct: 58  DLEEVLADAD------VLIDFTTPEATLENLELALKHGKPLVIGTTGFTEE-QLAELKEA 110

Query: 149 SAFCDKASMGCLIAP 163
           +       +  +IAP
Sbjct: 111 A-----KKIPIVIAP 120

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	100.0
TIGR00036	266	dapB dihydrodipicolinate reductase.	100.0
PRK00048	257	dihydrodipicolinate reductase; Provisional	100.0
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	100.0
PLN02775	286	Probable dihydrodipicolinate reductase	100.0
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	100.0
PF05173	132	DapB_C: Dihydrodipicolinate reductase, C-terminus;	99.89
PRK13303	265	L-aspartate dehydrogenase; Provisional	99.64
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.62
PRK13304	265	L-aspartate dehydrogenase; Reviewed	99.49
PRK11579	346	putative oxidoreductase; Provisional	99.44
COG0673	342	MviM Predicted dehydrogenases and related proteins	99.43
PRK08374	336	homoserine dehydrogenase; Provisional	99.38
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.37
PRK10206	344	putative oxidoreductase; Provisional	99.34
PRK06270	341	homoserine dehydrogenase; Provisional	99.29
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	99.28
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	99.26
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	99.17
PRK06349	426	homoserine dehydrogenase; Provisional	99.16
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	99.16
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	99.15
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	99.13
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	99.07
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.95
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	98.94
COG3804	350	Uncharacterized conserved protein related to dihyd	98.89
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	98.86
PRK08300	302	acetaldehyde dehydrogenase; Validated	98.85
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	98.85
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	98.82
PRK06392	326	homoserine dehydrogenase; Provisional	98.8
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.77
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	98.67
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	98.66
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.62
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	98.61
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	98.57
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	98.54
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	98.54
PRK06813	346	homoserine dehydrogenase; Validated	98.52
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.5
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.42
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.39
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	98.26
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	98.24
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	98.22
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	98.19
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	98.16
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.12
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.11
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	98.09
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.06
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.05
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.03
KOG1255	329	consensus Succinyl-CoA synthetase, alpha subunit [	98.03
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.01
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	97.99
PLN02700	377	homoserine dehydrogenase family protein	97.98
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.97
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.94
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	97.93
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.9
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	97.89
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.88
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.87
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.87
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.85
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.84
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.84
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.84
PLN02383	344	aspartate semialdehyde dehydrogenase	97.83
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.83
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	97.83
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.81
TIGR03450	351	mycothiol_INO1 inositol 1-phosphate synthase, Acti	97.8
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.79
PLN02688	266	pyrroline-5-carboxylate reductase	97.76
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	97.75
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.74
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.74
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.73
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.72
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.71
PRK07680	273	late competence protein ComER; Validated	97.69
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.66
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.64
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.63
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.6
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.59
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.58
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.56
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.53
COG2344	211	AT-rich DNA-binding protein [General function pred	97.52
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.48
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.48
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	97.47
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.45
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	97.44
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.43
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.41
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.4
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	97.4
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.35
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	97.35
PLN02712	667	arogenate dehydrogenase	97.35
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.32
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	97.31
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.28
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.28
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.25
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	97.24
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	97.21
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	97.19
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.19
COG1810	224	Uncharacterized protein conserved in archaea [Func	97.19
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.18
PLN02256	304	arogenate dehydrogenase	97.18
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	97.16
PLN02712	667	arogenate dehydrogenase	97.1
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.09
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.08
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.08
COG2910	211	Putative NADH-flavin reductase [General function p	97.06
PRK08655	437	prephenate dehydrogenase; Provisional	97.04
CHL00194	317	ycf39 Ycf39; Provisional	97.01
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	96.99
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	96.98
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.97
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	96.96
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	96.94
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.9
COG3367	339	Uncharacterized conserved protein [Function unknow	96.9
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.89
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.88
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.87
PLN02522	608	ATP citrate (pro-S)-lyase	96.86
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.85
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.84
PRK07417	279	arogenate dehydrogenase; Reviewed	96.78
COG4693	361	PchG Oxidoreductase (NAD-binding), involved in sid	96.76
PRK08223	287	hypothetical protein; Validated	96.76
KOG0409	327	consensus Predicted dehydrogenase [General functio	96.76
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.7
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.69
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.66
PRK08507	275	prephenate dehydrogenase; Validated	96.62
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.62
PLN02858	1378	fructose-bisphosphate aldolase	96.61
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.6
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.53
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.53
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.52
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.49
PLN02858	1378	fructose-bisphosphate aldolase	96.48
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.47
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.47
PRK09414	445	glutamate dehydrogenase; Provisional	96.45
COG1832	140	Predicted CoA-binding protein [General function pr	96.43
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	96.42
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.36
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.35
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.35
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.27
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	96.26
PRK06091	555	membrane protein FdrA; Validated	96.23
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	96.23
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.23
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.23
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	96.23
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.22
PRK08328	231	hypothetical protein; Provisional	96.19
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.18
PRK08618	325	ornithine cyclodeaminase; Validated	96.18
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.13
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.03
PRK07411	390	hypothetical protein; Validated	96.02
PRK08818	370	prephenate dehydrogenase; Provisional	96.01
PRK08605	332	D-lactate dehydrogenase; Validated	95.96
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.96
PLN00016	378	RNA-binding protein; Provisional	95.94
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.9
PLN00106	323	malate dehydrogenase	95.89
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.83
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.83
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	95.8
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.79
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	95.75
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.73
PRK06444	197	prephenate dehydrogenase; Provisional	95.73
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.72
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	95.72
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.71
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.71
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.7
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.68
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	95.68
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.68
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.68
PLN02427	386	UDP-apiose/xylose synthase	95.67
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.66
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	95.65
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.64
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.62
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.59
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.57
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.56
PLN02778	298	3,5-epimerase/4-reductase	95.54
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	95.54
PRK06545	359	prephenate dehydrogenase; Validated	95.49
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.49
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.48
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	95.43
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.41
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.38
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.38
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	95.37
PF02593	217	dTMP_synthase: Thymidylate synthase; InterPro: IPR	95.37
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.36
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	95.35
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	95.33
COG1260	362	INO1 Myo-inositol-1-phosphate synthase [Lipid meta	95.32
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.32
PRK05865	854	hypothetical protein; Provisional	95.26
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	95.22
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.21
PLN03139	386	formate dehydrogenase; Provisional	95.19
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.14
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.11
PRK07574	385	formate dehydrogenase; Provisional	95.08
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.08
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.06
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.05
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.97
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.96
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	94.92
PRK06046	326	alanine dehydrogenase; Validated	94.91
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	94.88
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.86
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.85
PLN02166	436	dTDP-glucose 4,6-dehydratase	94.85
PRK14852	989	hypothetical protein; Provisional	94.85
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.85
PLN02260	668	probable rhamnose biosynthetic enzyme	94.85
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	94.85
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.83
PRK07877	722	hypothetical protein; Provisional	94.82
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.82
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.78
PLN02477	410	glutamate dehydrogenase	94.77
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	94.76
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	94.71
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.68
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	94.64
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	94.64
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.63
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.6
PRK09496	453	trkA potassium transporter peripheral membrane com	94.59
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	94.58
PLN02206	442	UDP-glucuronate decarboxylase	94.53
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.49
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	94.47
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	94.46
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.44
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.36
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.36
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	94.33
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	94.32
PTZ00117	319	malate dehydrogenase; Provisional	94.31
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	94.31
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.26
PRK12320	699	hypothetical protein; Provisional	94.22
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.19
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.19
PRK13243	333	glyoxylate reductase; Reviewed	94.18
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	94.14
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.12
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	94.1
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	94.05
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.04
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	94.02
PRK14030	445	glutamate dehydrogenase; Provisional	94.0
PRK05086	312	malate dehydrogenase; Provisional	93.94
PLN03209	576	translocon at the inner envelope of chloroplast su	93.94
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.87
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.85
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.75
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.72
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	93.69
PRK12480	330	D-lactate dehydrogenase; Provisional	93.68
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.68
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	93.68
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.62
PRK05693	274	short chain dehydrogenase; Provisional	93.6
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.6
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	93.51
PRK06141	314	ornithine cyclodeaminase; Validated	93.51
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	93.5
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	93.34
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	93.29
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	93.26
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	93.26
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	93.2
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.19
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	93.19
PRK10675	338	UDP-galactose-4-epimerase; Provisional	93.17
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	93.16
PRK05442	326	malate dehydrogenase; Provisional	93.13
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	93.11
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	93.1
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	93.08
PRK14031	444	glutamate dehydrogenase; Provisional	93.04
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	93.02
PLN02214	342	cinnamoyl-CoA reductase	92.99
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	92.97
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	92.96
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	92.96
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.96
PRK07340	304	ornithine cyclodeaminase; Validated	92.96
PRK06223	307	malate dehydrogenase; Reviewed	92.95
PRK06182	273	short chain dehydrogenase; Validated	92.95
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	92.9
PRK05993	277	short chain dehydrogenase; Provisional	92.9
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	92.88
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.85
PTZ00325	321	malate dehydrogenase; Provisional	92.77
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	92.77
PRK06436	303	glycerate dehydrogenase; Provisional	92.73
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	92.65
PRK08291	330	ectoine utilization protein EutC; Validated	92.64
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	92.62
PRK08177	225	short chain dehydrogenase; Provisional	92.62
PLN00203	519	glutamyl-tRNA reductase	92.59
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.57
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.54
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	92.5
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	92.49
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	92.46
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	92.4
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	92.36
PRK14851	679	hypothetical protein; Provisional	92.29
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.2
PRK14982	340	acyl-ACP reductase; Provisional	92.15
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	92.12
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	92.09
PLN02260	668	probable rhamnose biosynthetic enzyme	92.08
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	92.06
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	92.04
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.0
PRK08340	259	glucose-1-dehydrogenase; Provisional	91.99
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	91.94
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	91.89
PLN02240	352	UDP-glucose 4-epimerase	91.85
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	91.82
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	91.74
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	91.72
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	91.61
KOG0780	483	consensus Signal recognition particle, subunit Srp	91.54
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.53
PLN00112	444	malate dehydrogenase (NADP); Provisional	91.45
KOG2742	367	consensus Predicted oxidoreductase [General functi	91.44
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	91.44
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	91.43
PRK05884	223	short chain dehydrogenase; Provisional	91.42
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	91.41
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.32
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	91.2
PRK06153	393	hypothetical protein; Provisional	91.19
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	91.18
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	91.16
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	91.16
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.12
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	91.11
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	91.09
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.02
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	91.0
PRK06180	277	short chain dehydrogenase; Provisional	90.94
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	90.92
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	90.92
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	90.87
PRK10538	248	malonic semialdehyde reductase; Provisional	90.83
PRK03659	601	glutathione-regulated potassium-efflux system prot	90.82
PRK06953	222	short chain dehydrogenase; Provisional	90.82
PRK15204	476	undecaprenyl-phosphate galactose phosphotransferas	90.74
PRK07904	253	short chain dehydrogenase; Provisional	90.73
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.72
COG0300	265	DltE Short-chain dehydrogenases of various substra	90.7
PLN02896	353	cinnamyl-alcohol dehydrogenase	90.66
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	90.64
KOG2774	366	consensus NAD dependent epimerase [General functio	90.61
PRK08267	260	short chain dehydrogenase; Provisional	90.58
PRK06988	312	putative formyltransferase; Provisional	90.54
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	90.54
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	90.4
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	90.4
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	90.39
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	90.39
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	90.32
PRK06947	248	glucose-1-dehydrogenase; Provisional	90.29
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	90.21
PLN02572	442	UDP-sulfoquinovose synthase	90.14
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	90.12
COG2403	449	Predicted GTPase [General function prediction only	90.07
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	89.87
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	89.87
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	89.84
PLN02602	350	lactate dehydrogenase	89.82
PRK06179	270	short chain dehydrogenase; Provisional	89.75
PRK07578	199	short chain dehydrogenase; Provisional	89.71
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	89.69
PTZ00075	476	Adenosylhomocysteinase; Provisional	89.69
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	89.65
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.6
PRK05866	293	short chain dehydrogenase; Provisional	89.56
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	89.52
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.49
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	89.47
PRK13940	414	glutamyl-tRNA reductase; Provisional	89.46
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	89.39
PLN02494	477	adenosylhomocysteinase	89.38
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.33
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	89.27
PRK07825	273	short chain dehydrogenase; Provisional	89.25
PRK12938	246	acetyacetyl-CoA reductase; Provisional	89.21
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	89.21
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	89.17
PLN00198	338	anthocyanidin reductase; Provisional	89.16
PRK08591	451	acetyl-CoA carboxylase biotin carboxylase subunit;	89.13
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	89.13
PRK10669	558	putative cation:proton antiport protein; Provision	89.1
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	89.06
PLN02650	351	dihydroflavonol-4-reductase	89.04
PRK12829	264	short chain dehydrogenase; Provisional	88.97
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	88.96
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	88.88
PRK07454	241	short chain dehydrogenase; Provisional	88.83
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	88.82
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	88.81
PRK03562	621	glutathione-regulated potassium-efflux system prot	88.78
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	88.73
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.71
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.69
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	88.66
PRK09134	258	short chain dehydrogenase; Provisional	88.5
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	88.48
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	88.38
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.32
PRK07326	237	short chain dehydrogenase; Provisional	88.3
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	88.29
PRK09009	235	C factor cell-cell signaling protein; Provisional	88.26
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.26
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	88.24
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	88.23
PRK07023	243	short chain dehydrogenase; Provisional	88.19
PRK11730	715	fadB multifunctional fatty acid oxidation complex	88.16
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	88.14
PRK06196	315	oxidoreductase; Provisional	87.84
KOG2733	423	consensus Uncharacterized membrane protein [Functi	87.8
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	87.79
PRK08017	256	oxidoreductase; Provisional	87.79
PF07994	295	NAD_binding_5: Myo-inositol-1-phosphate synthase;	87.78
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	87.72
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	87.65
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	87.6
PRK06523	260	short chain dehydrogenase; Provisional	87.54
COG0151	428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	87.53
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	87.39
PRK06487	317	glycerate dehydrogenase; Provisional	87.3
PRK12464	383	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	87.27
PRK12939	250	short chain dehydrogenase; Provisional	87.22
PRK06841	255	short chain dehydrogenase; Provisional	87.12
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	87.08
PRK06719	157	precorrin-2 dehydrogenase; Validated	87.02
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.91
PRK12767	326	carbamoyl phosphate synthase-like protein; Provisi	86.77
PRK06932	314	glycerate dehydrogenase; Provisional	86.77
PLN02306	386	hydroxypyruvate reductase	86.73
PRK09186	256	flagellin modification protein A; Provisional	86.49
PLN02253	280	xanthoxin dehydrogenase	86.48
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	86.36
PRK06139	330	short chain dehydrogenase; Provisional	86.31
PRK07985	294	oxidoreductase; Provisional	86.29
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	86.11
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	86.1
PRK12742	237	oxidoreductase; Provisional	86.08
PRK06199	379	ornithine cyclodeaminase; Validated	86.04
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	86.0
PRK08628	258	short chain dehydrogenase; Provisional	85.99
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	85.98
COG2130	340	Putative NADP-dependent oxidoreductases [General f	85.94
PRK12827	249	short chain dehydrogenase; Provisional	85.91
PRK07890	258	short chain dehydrogenase; Provisional	85.89
PRK12743	256	oxidoreductase; Provisional	85.86
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	85.82
PRK07806	248	short chain dehydrogenase; Provisional	85.6
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	85.44
PRK06823	315	ornithine cyclodeaminase; Validated	85.35
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	85.34
PLN02928	347	oxidoreductase family protein	85.26
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	85.19

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-66  Score=462.02  Aligned_cols=211  Identities=27%  Similarity=0.338  Sum_probs=195.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      +||||+|+||+|||||.+++++.+.++++|+++++++   ..|.|++++++.+ ..++++++|+....      .++||+
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~------~~~DV~   73 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVK------ADADVL   73 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhcc------cCCCEE
Confidence            4899999999999999999999999999999999953   5688999999885 89999999977666      489999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCC--CCCeEE
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEI  188 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~--~~DiEI  188 (257)
                      ||||+|+.+++++++|+++|+++|||||||++++++.|++++++  +|+|+|||||+||||+.++++.+++.  +|||||
T Consensus        74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEI  151 (266)
T COG0289          74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEI  151 (266)
T ss_pred             EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEe
Confidence            99999999999999999999999999999999999999999999  99999999999999988887666653  689999


Q ss_pred             EeccCCCCCCCCCccHHHHHH---------------hhhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEEe
Q 025154          189 VESRPNARVRYMTRTLISMQV---------------CLRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILSK  249 (257)
Q Consensus       189 iE~HH~~K~DapSGTa~~l~~---------------~~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~h  249 (257)
                      +|+|||+|+|||||||+++++               |.|+|.+++|.+++|||||+|+|+|||+    |+++||+|||+|
T Consensus       152 iE~HHr~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g~r~~~~Igi~svR~G~ivG~H~V~F~~~GE~iei~H  231 (266)
T COG0289         152 IEAHHRHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATGARKEGEIGIHSVRGGDIVGEHEVIFAGEGERIEIRH  231 (266)
T ss_pred             hhhhcccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCcCCCCCCCceeEEeecCCcceeEEEEEecCCcEEEEEE
Confidence            999999999999999999953               5788999999999999999999999999    999999999999


Q ss_pred             ecCC
Q 025154          250 ILPS  253 (257)
Q Consensus       250 ~~~~  253 (257)
                      +--|
T Consensus       232 ~A~s  235 (266)
T COG0289         232 RATS  235 (266)
T ss_pred             eecc
Confidence            8654

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=100.00  E-value=2.8e-57  Score=409.33  Aligned_cols=212  Identities=26%  Similarity=0.349  Sum_probs=188.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ||||+|+|++||||+.+++.+.+.++++|++++|+.   ..+++++++.+.. +.++++++|++++ .     ..+||||
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI   73 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI   73 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence            589999998899999999999989999999999942   3366777777653 5689999999998 3     3799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC--CCCCeEEE
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF--HYKNVEIV  189 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~--~~~DiEIi  189 (257)
                      |||+|+.+.++++.|+++|+|+|+|||||++++.++|.++|+++|+|++++||||+|||+|.++++.+++  .+||+||+
T Consensus        74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~  153 (266)
T TIGR00036        74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEII  153 (266)
T ss_pred             ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEee
Confidence            9999999999999999999999999999999999999999999999999999999999997777655544  35899999


Q ss_pred             eccCCCCCCCCCccHHHHHH---------------hhhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEEee
Q 025154          190 ESRPNARVRYMTRTLISMQV---------------CLRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILSKI  250 (257)
Q Consensus       190 E~HH~~K~DapSGTa~~l~~---------------~~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~h~  250 (257)
                      |+|||+|+|+|||||++|+.               |.|++..++|.+++|||||+|+|+|+|+    |.++||+|||+|.
T Consensus       154 E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~i~i~s~R~g~i~g~h~v~f~~~~e~i~i~H~  233 (266)
T TIGR00036       154 ELHHRHKKDAPSGTALKTAEMIAEARGERLKNVAVTEREGLTGERGREEIGIHAVRGGDVVGEHTVMFAGDGERLEITHR  233 (266)
T ss_pred             eeccCCCCCCCCHHHHHHHHHHHHhhccccccCccccccCCcCCCCCCccceEEEecCCceEEEEEEEcCCCeEEEEEEE
Confidence            99999999999999999964               2355666788889999999999999999    8999999999998


Q ss_pred             cCC
Q 025154          251 LPS  253 (257)
Q Consensus       251 ~~~  253 (257)
                      --+
T Consensus       234 a~~  236 (266)
T TIGR00036       234 ASS  236 (266)
T ss_pred             ECc
Confidence            654

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=100.00  E-value=1.7e-52  Score=376.25  Aligned_cols=205  Identities=26%  Similarity=0.310  Sum_probs=176.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ||||+|+|++|+||+.+++.+.+.++++|++++|+....  ....    ...++++++|++++++      ++|||||||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--LVGQ----GALGVAITDDLEAVLA------DADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--cccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence            689999998899999999999888999999999964211  1111    1457788999999984      699999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCC--CCCeEEEecc
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEIVESR  192 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~--~~DiEIiE~H  192 (257)
                      +|+.+.+++..|+++|+|+|+|||||++++.++|.+++++  +|++++||||+|+|++.++++.+.+.  .||+||+|+|
T Consensus        69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~--~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~H  146 (257)
T PRK00048         69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKK--IPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAH  146 (257)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcC--CCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            9999999999999999999999999999999999997756  99999999999999877766555442  3899999999


Q ss_pred             CCCCCCCCCccHHHHHHh---------------hhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEEeecCC
Q 025154          193 PNARVRYMTRTLISMQVC---------------LRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILSKILPS  253 (257)
Q Consensus       193 H~~K~DapSGTa~~l~~~---------------~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~h~~~~  253 (257)
                      ||+|+|+|||||++|+..               .|.|..++|.+++|+|||+|+|+|+|+    |.++||+|||+|.--|
T Consensus       147 H~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~R~g~~~g~h~v~f~~~~e~i~i~H~a~~  226 (257)
T PRK00048        147 HRHKVDAPSGTALKLAEAIAEARGRDLKEVAVYGREGATGARVKGEIGIHSVRGGDIVGEHEVIFAGDGERIEIRHDATS  226 (257)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcccccccceeccCCccCCcCCCCccEEEEEcCCceEEEEEEEecCCcEEEEEEEECc
Confidence            999999999999999653               233555677788999999999999999    8999999999998654

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=100.00  E-value=2.2e-52  Score=377.17  Aligned_cols=203  Identities=17%  Similarity=0.145  Sum_probs=177.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCeee------ecCHHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~g~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~D  108 (257)
                      +||+|+||+||||+++++++.. ++++||++ +|++..+.|.+++.|.    ++++      +++++++++     ..+|
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d   70 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE   70 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence            5899999999999999999887 89999998 8876667788888753    7888      899999986     3599


Q ss_pred             -EEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCC-----
Q 025154          109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH-----  182 (257)
Q Consensus       109 -VvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~-----  182 (257)
                       |+||||+|+++++++++|+++|+|+|+|||||++++.++|.+.   .++|+|||||||+|+||++++++.++++     
T Consensus        71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~---~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f  147 (275)
T TIGR02130        71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVAD---AKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAF  147 (275)
T ss_pred             EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHh---cCCCEEEECcccHHHHHHHHHHHHHHHhhcccc
Confidence             9999999999999999999999999999999999988888554   3499999999999999987776655442     


Q ss_pred             -CCCeEEEeccCCCCCCCCCccHHHHHH--------hhhccccCCCCCC-CceeeeeecCCcce---e----eccCCcE-
Q 025154          183 -YKNVEIVESRPNARVRYMTRTLISMQV--------CLRHIYLYPKFQN-NNSFHTKRKLKIAS---S----IIGVGEI-  244 (257)
Q Consensus       183 -~~DiEIiE~HH~~K~DapSGTa~~l~~--------~~r~g~~~~r~~~-~Igi~s~R~G~IvG---~----f~g~~E~-  244 (257)
                       +||+||+|+||++|+|+ ||||++|+.        |+|+++.++|+++ +|||+++|+ +++|   +    |.+++|+ 
T Consensus       148 ~~ydvEIiE~HH~~K~Da-SGTA~~l~~~i~~~~~~~~~~~~~~~R~~~~~igi~siR~-~~vgGh~~Htv~f~s~~e~i  225 (275)
T TIGR02130       148 AGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDIEKIRDEKEQIERMGVPE-EHLGGHAFHLYHLDSADGTV  225 (275)
T ss_pred             CCCCEEEEEcCCCCCCCC-CHHHHHHHHHHHHhCCccCcccccccCCCCCccceEEecC-cccCCCccEEEEEecCCCeE
Confidence             47999999999999999 999999965        4577888889887 999999999 5555   6    8999999 


Q ss_pred             -EEEEeecCC
Q 025154          245 -LILSKILPS  253 (257)
Q Consensus       245 -iel~h~~~~  253 (257)
                       |||+|+--|
T Consensus       226 ~iel~H~A~s  235 (275)
T TIGR02130       226 HFEFQHNVCG  235 (275)
T ss_pred             EEEEEEEECc
Confidence             699998654

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PLN02775 Probable dihydrodipicolinate reductase

Probab=100.00  E-value=6e-52  Score=375.86  Aligned_cols=214  Identities=17%  Similarity=0.204  Sum_probs=177.3

Q ss_pred             ccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeee--cCHHHHHhcccc
Q 025154           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQ  103 (257)
Q Consensus        27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g-~~~g~~~~~gv~v~--~dl~~~l~~~~~  103 (257)
                      ++.+|+.+.+||+|.||+||||+++++.+.+ ++++||+++|+...|.+.+ ++.|    .+++++  +|+++++.++. 
T Consensus         3 ~~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~-   76 (286)
T PLN02775          3 STASPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVK-   76 (286)
T ss_pred             CcCCCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhh-
Confidence            3456778889999999999999999999998 9999999999765566666 5554    278888  99999996411 


Q ss_pred             CCCcc-EEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC-
Q 025154          104 SKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF-  181 (257)
Q Consensus       104 ~~~~D-VvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~-  181 (257)
                      +..+| |+||||+|+++++++++|+++|+|+|+|||||+++|++++   ++++++|+|||||||+|+|||+++++.+++ 
T Consensus        77 ~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~---~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~  153 (286)
T PLN02775         77 AEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKD---VEESGVYAVIAPQMGKQVVAFQAAMEIMAEQ  153 (286)
T ss_pred             ccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HhcCCccEEEECcccHHHHHHHHHHHHHHHh
Confidence            12699 9999999999999999999999999999999999876555   444569999999999999998777655443 


Q ss_pred             -----CCCCeEEEeccCCCCCCCCCccHHHHHHh--------hhccccCCCC----CCCceee--eeecCCccee----e
Q 025154          182 -----HYKNVEIVESRPNARVRYMTRTLISMQVC--------LRHIYLYPKF----QNNNSFH--TKRKLKIASS----I  238 (257)
Q Consensus       182 -----~~~DiEIiE~HH~~K~DapSGTa~~l~~~--------~r~g~~~~r~----~~~Igi~--s~R~G~IvG~----f  238 (257)
                           .+||+||+|.||++|+|+ ||||++++..        .|.++...|+    .++|||+  ++|||+   +    |
T Consensus       154 l~~~f~~yDiEIiE~HH~~K~Da-SGTA~~lae~i~~~g~~~~~~~~~~~R~~~~~~~~igi~~~~lRgg~---~HtV~f  229 (286)
T PLN02775        154 FPGAFSGYTLEVVESHQATKLDT-SGTAKAVISSFRKLGVSFDMDQIELIRDPKQQLEGVGVPEEHLNGHA---FHTYRL  229 (286)
T ss_pred             cccccCCCCEEEEECCCCCCCCC-cHHHHHHHHHHHHhCCcccccccccccCccccccccceeeecccCCC---cEEEEE
Confidence                 358999999999999999 9999999753        2444333443    4489995  999999   5    8


Q ss_pred             ccCCcE--EEEEeecCC
Q 025154          239 IGVGEI--LILSKILPS  253 (257)
Q Consensus       239 ~g~~E~--iel~h~~~~  253 (257)
                      .++||+  |||+|+--+
T Consensus       230 ~~~~E~~~iel~H~A~s  246 (286)
T PLN02775        230 TSPDGTVSFEFQHNVCG  246 (286)
T ss_pred             ecCCCeEEEEEEEEeCc
Confidence            999999  999998654

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=100.00  E-value=3.4e-33  Score=225.56  Aligned_cols=121  Identities=36%  Similarity=0.603  Sum_probs=108.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |||+|+|++||||+.+++.+.++++++|++++++.   ..|+|++++++.. +.++++++|++++++      .+||+||
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID   73 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID   73 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence            79999998899999999999999999999999954   4799999999985 889999999999996      5999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      ||+|+.+.+++++|+++|+|+|+|||||+++|.++|++++++  +|+||||||
T Consensus        74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~Nf  124 (124)
T PF01113_consen   74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK--IPVLIAPNF  124 (124)
T ss_dssp             ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT--SEEEE-SSS
T ss_pred             cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEeCCC
Confidence            999999999999999999999999999999999999999999  999999998

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase

Probab=99.89  E-value=9.7e-24  Score=172.61  Aligned_cols=86  Identities=21%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhcC---CCCCeEEEeccCCCCCCCCCccHHHHHHhhhccc--------cCCC-CCCCceeeeeecCCcc
Q 025154          168 GSILLQQAAISASF---HYKNVEIVESRPNARVRYMTRTLISMQVCLRHIY--------LYPK-FQNNNSFHTKRKLKIA  235 (257)
Q Consensus       168 Gvnll~~~a~~l~~---~~~DiEIiE~HH~~K~DapSGTa~~l~~~~r~g~--------~~~r-~~~~Igi~s~R~G~Iv  235 (257)
                      |||||+++++.+++   .+||+||+|+||++|+|+|||||++|+....+..        ...| ++++|+|+|+|+|+|+
T Consensus         1 Gv~ll~~l~~~aa~~l~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~i~v~s~R~g~i~   80 (132)
T PF05173_consen    1 GVNLLMKLAKQAAKLLPNGYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDLSEVARGGREQENEIGVHSVRGGGIV   80 (132)
T ss_dssp             HHHHHHHHHHHHHHHTTTTSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEHHHHEEECCGETTCEEEEEEE-TT--
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCccccccccccccCCccceEEEEEcCCCC
Confidence            89987776555443   3599999999999999999999999986432211        1222 5789999999999999


Q ss_pred             ee----eccCCcEEEEEeecCC
Q 025154          236 SS----IIGVGEILILSKILPS  253 (257)
Q Consensus       236 G~----f~g~~E~iel~h~~~~  253 (257)
                      |+    |.+++|+|||+|.--|
T Consensus        81 G~H~V~f~~~~E~i~l~H~a~s  102 (132)
T PF05173_consen   81 GEHEVIFGSPGETIELTHRAHS  102 (132)
T ss_dssp             EEEEEEEEETTEEEEEEEEESS
T ss_pred             EEEEEEEcCCCcEEEEEEEeCC
Confidence            99    8999999999998654

Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=99.64  E-value=3.7e-15  Score=134.77  Aligned_cols=127  Identities=13%  Similarity=0.108  Sum_probs=99.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ||||+|+|+ |+||+.+++.+...++++|++++++...........    ..++++++|++++ +     .++|+||+||
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t   69 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA   69 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence            689999996 999999999999889999999997532111111111    1257889999988 5     4899999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCC-CC-HHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG-~s-~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                      .+..+.+++..++++|+++|++++| ++ .+..++|.++|+++|..+++.+.+--|..++
T Consensus        70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l  129 (265)
T PRK13303         70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDAL  129 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHH
Confidence            9999999999999999999999997 55 4445789999999999888844444333344

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.62  E-value=6.4e-15  Score=116.08  Aligned_cols=116  Identities=27%  Similarity=0.338  Sum_probs=99.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |||+|+|+ |.+|+.+.+.+... +++++++++|+..  .....+.   ...+++.|+|++++++.    .++|+|+.+|
T Consensus         1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t   70 (120)
T PF01408_consen    1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT   70 (120)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence            69999995 99999999888877 8999999999641  1222222   25688899999999975    5799999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEE
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI  161 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~  161 (257)
                      .+..+.+++..|+++|+++++.+| ..+.++.++|.++++++|+.+.+
T Consensus        71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V  118 (120)
T PF01408_consen   71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV  118 (120)
T ss_dssp             SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence            999999999999999999999999 78999999999999998888765

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=99.49  E-value=7e-13  Score=119.88  Aligned_cols=126  Identities=13%  Similarity=0.121  Sum_probs=102.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ||||+|+|+ |+||+.+++.+.... ++++++++|+..  ..+..+.   +..++++++|+++++.      ++|+|+++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a---~~~~~~~~~~~~ell~------~~DvVvi~   68 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL--EKAENLA---SKTGAKACLSIDELVE------DVDLVVEC   68 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHH---HhcCCeeECCHHHHhc------CCCEEEEc
Confidence            689999995 999999999988764 899999998642  1222332   2356778899999884      79999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCC--CHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~--s~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                      +.|+.+.+++..++++|+++++.++|.  +++..++|.++|+++|..+++.+..-.|...+
T Consensus        69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i  129 (265)
T PRK13304         69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGI  129 (265)
T ss_pred             CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHH
Confidence            999999999999999999999988863  67777899999999999888876555556544

>PRK11579 putative oxidoreductase; Provisional

Probab=99.44  E-value=1.6e-12  Score=120.99  Aligned_cols=145  Identities=17%  Similarity=0.147  Sum_probs=111.4

Q ss_pred             CCceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .++||||+|+ |.||+ .++..+...++++|++++|+..  ..+.+     .-.++++|+|+++++++    .++|+|+.
T Consensus         3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~ell~~----~~vD~V~I   70 (346)
T PRK11579          3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKA-----DWPTVTVVSEPQHLFND----PNIDLIVI   70 (346)
T ss_pred             CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHh-----hCCCCceeCCHHHHhcC----CCCCEEEE
Confidence            3689999995 99998 5788888889999999998641  11111     11246689999999974    57999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHhcCCCCCeEEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIV  189 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l~~~~~DiEIi  189 (257)
                      .|.+..+.+++..|+++|+||+|.+| ..+.++.++|.++|+++|+.+.++.|+  .-.+.-++++.+.  +...++..+
T Consensus        71 ~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~  148 (346)
T PRK11579         71 PTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAE--GVLGEVAYF  148 (346)
T ss_pred             cCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhc--CCCCCeEEE
Confidence            99999999999999999999999999 788999999999999999888777664  4444445555422  123466556


Q ss_pred             ecc
Q 025154          190 ESR  192 (257)
Q Consensus       190 E~H  192 (257)
                      +.|
T Consensus       149 ~~~  151 (346)
T PRK11579        149 ESH  151 (346)
T ss_pred             EEE
Confidence            654

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=99.43  E-value=2.9e-12  Score=117.54  Aligned_cols=152  Identities=19%  Similarity=0.172  Sum_probs=112.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      .||||||+|+.|.+++.++..+...++ +++++++|+..  ..+..++   ..++++ .|+|++++++.    .++|+|+
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V~   72 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAVY   72 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEE
Confidence            479999999633666779988888777 79999999642  1122232   256664 89999999985    5689999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC--CCCCeEE
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF--HYKNVEI  188 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~--~~~DiEI  188 (257)
                      ..|++..+.+++..|+++|+||+|.+| ..+.++.++|.++|+++|+.+.+.-|+-.-=. +++ ++.+-.  ...++..
T Consensus        73 Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~-~~~-~k~li~~g~lG~v~~  150 (342)
T COG0673          73 IATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPA-VQA-LKELIDSGALGEVVS  150 (342)
T ss_pred             EcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHH-HHH-HHHHHhcCCcCceEE
Confidence            999999999999999999999999999 88999999999999998888777666544321 222 222221  2356666


Q ss_pred             EeccCCCC
Q 025154          189 VESRPNAR  196 (257)
Q Consensus       189 iE~HH~~K  196 (257)
                      ++.+....
T Consensus       151 ~~~~~~~~  158 (342)
T COG0673         151 VQASFSRD  158 (342)
T ss_pred             EEEEeecc
Confidence            66554443

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.38  E-value=4.5e-12  Score=118.43  Aligned_cols=137  Identities=15%  Similarity=0.161  Sum_probs=101.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCCCCCC----ee----e-e
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE----IP----V-M   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~g----v~----v-~   91 (257)
                      ++||+|.| +|.+|+.+++.+.+.         -+++|+++.|+.     ..|-+..++.....+.+    .+    . .
T Consensus         2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~   80 (336)
T PRK08374          2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN   80 (336)
T ss_pred             eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence            58999999 599999999987653         248899999853     22434433221111111    10    0 1


Q ss_pred             cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      .++++++..    .++||+||||.++.+.++...++++|+|||++++|.-....++|.++|+++|++++|++|++.|+-+
T Consensus        81 ~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi  156 (336)
T PRK08374         81 FSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI  156 (336)
T ss_pred             CCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence            167788743    4799999999999999999999999999999999843445568889999999999999999999976


Q ss_pred             HHHHH
Q 025154          172 LQQAA  176 (257)
Q Consensus       172 l~~~a  176 (257)
                      +.-+-
T Consensus       157 i~~l~  161 (336)
T PRK08374        157 IGLLR  161 (336)
T ss_pred             hHHHH
Confidence            54443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.37  E-value=9.9e-12  Score=112.87  Aligned_cols=125  Identities=17%  Similarity=0.209  Sum_probs=100.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ++||+|+| +|+||+.+++.+.. .++++|++++|+..  ..+.++.   ..++. ..+++++++++      ++|+|+.
T Consensus         6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE   73 (271)
T ss_pred             eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence            48999999 59999999999887 48999999998641  1122222   13443 56789999985      6999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                      .+.++.+.+++..++++|+++++.++|- .++.++|.++|+++|.++.+.+.|-.|...+
T Consensus        74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~g~d~l  132 (271)
T PRK13302         74 AAPASVLRAIVEPVLAAGKKAIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALLGLDAV  132 (271)
T ss_pred             CCCcHHHHHHHHHHHHcCCcEEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHHhHHHH
Confidence            9999999999999999999999877662 2356789999999999999988888776543

>PRK10206 putative oxidoreductase; Provisional

Probab=99.34  E-value=9e-12  Score=116.41  Aligned_cols=144  Identities=20%  Similarity=0.132  Sum_probs=107.9

Q ss_pred             CceEEEEcCCChHH-HHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIG-RAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG-~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |+||||+|+ |+++ +.++..+.. .++++|++++|+..   +..++.   ..+ ++++|+|+++++++    .++|+|+
T Consensus         1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~---~~~~~~---~~~~~~~~~~~~~ell~~----~~iD~V~   69 (344)
T PRK10206          1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHA---KPEEQA---PIYSHIHFTSDLDEVLND----PDVKLVV   69 (344)
T ss_pred             CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCCh---hHHHHH---HhcCCCcccCCHHHHhcC----CCCCEEE
Confidence            689999995 9977 456776644 47899999999642   111222   133 36789999999974    5799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCch--HHHHHHHHHHHHhcCCCCCeEE
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEI  188 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfS--lGvnll~~~a~~l~~~~~DiEI  188 (257)
                      ..|.+..+.+++..|+++|+||+|.++ ..+.++.++|.++|+++|+.+.+..|+-  -.+.-++++.+.  +..-++--
T Consensus        70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~--g~iG~i~~  147 (344)
T PRK10206         70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE  147 (344)
T ss_pred             EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc--CCCCCeEE
Confidence            999999999999999999999999999 7788999999999999999988887744  334335555432  12334444


Q ss_pred             Eec
Q 025154          189 VES  191 (257)
Q Consensus       189 iE~  191 (257)
                      ++.
T Consensus       148 i~~  150 (344)
T PRK10206        148 VES  150 (344)
T ss_pred             EEE
Confidence            444

>PRK06270 homoserine dehydrogenase; Provisional

Probab=99.29  E-value=3.8e-11  Score=112.36  Aligned_cols=140  Identities=15%  Similarity=0.163  Sum_probs=102.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCC-ee------eecC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP------VMSD   93 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~g~~~g~~~~~g-v~------v~~d   93 (257)
                      ++||+|+| +|.||+.+++.+.+.+         +++|++++|+.     ..|.+..++.....+.+ +.      .+.|
T Consensus         2 ~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (341)
T PRK06270          2 EMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS   80 (341)
T ss_pred             eEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence            58999999 5999999999987653         79999999953     22444433322111222 11      2348


Q ss_pred             HHHHHhccccCCCccEEEEcCChH-----hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154           94 LTMVLGSISQSKARAVVIDFTDAS-----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT~p~-----~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG  168 (257)
                      +++++++    .++|||||.|.+.     ...++++.|+++|+|||+++.+......++|.++|+++|+.+++-+...-|
T Consensus        81 ~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~g  156 (341)
T PRK06270         81 GLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGA  156 (341)
T ss_pred             HHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeec
Confidence            8998864    5799999988653     348999999999999999887766667789999999999999987777667


Q ss_pred             HHHHHHHHHHh
Q 025154          169 SILLQQAAISA  179 (257)
Q Consensus       169 vnll~~~a~~l  179 (257)
                      +-++..+-+.+
T Consensus       157 lPii~~l~~~l  167 (341)
T PRK06270        157 MPIINLAKETL  167 (341)
T ss_pred             hhHHHHHHhhc
Confidence            76655554333

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=99.28  E-value=6.4e-11  Score=110.08  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=110.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++||+|+| +|+||+.+++.+.+.++++|+|++++...+ ..+      ...++..+.|.++++.      ++|||+.+|
T Consensus         3 kIRVgIVG-~GnIGr~~a~al~~~pd~ELVgV~dr~~~~-~~~------~~~~v~~~~d~~e~l~------~iDVViIct   68 (324)
T TIGR01921         3 KIRAAIVG-YGNLGRSVEKAIQQQPDMELVGVFSRRGAE-TLD------TETPVYAVADDEKHLD------DVDVLILCM   68 (324)
T ss_pred             CcEEEEEe-ecHHHHHHHHHHHhCCCcEEEEEEcCCcHH-HHh------hcCCccccCCHHHhcc------CCCEEEEcC
Confidence            58999999 599999999999999999999999975211 111      1234444556666663      799999898


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCC-C-CHHHHHHHHHHhhhcCceEEEccCchHHHHH-HHHHHHHhcCCCCCe----E
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSIL-LQQAAISASFHYKNV----E  187 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG-~-s~e~~~~L~~~a~~~gipvl~spNfSlGvnl-l~~~a~~l~~~~~Di----E  187 (257)
                      .+..+.+.+..++++|+|+|....- . .++..+.|+++|+++|-..+++.-+--|..- .+.+.+.+.+.+-+.    .
T Consensus        69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~  148 (324)
T TIGR01921        69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGP  148 (324)
T ss_pred             CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCC
Confidence            8888899999999999999987542 2 2467889999999865566666677777763 444555555433222    4


Q ss_pred             EEeccCCCCCCCCCc
Q 025154          188 IVESRPNARVRYMTR  202 (257)
Q Consensus       188 IiE~HH~~K~DapSG  202 (257)
                      -+..+|..-+|+-.|
T Consensus       149 g~s~ghs~a~~~~~G  163 (324)
T TIGR01921       149 GLSQGHSDAVRRIDG  163 (324)
T ss_pred             CcCchhhhhhcccCC
Confidence            466788777775333

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=99.26  E-value=7.5e-11  Score=110.60  Aligned_cols=127  Identities=14%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ++||+|+|+  +||+.+++.+.+.+ +++|+|++|+..  +.+.+++   ..+|++.|+|++++++      ++|+++..
T Consensus         3 ~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~------d~Di~~V~   69 (343)
T TIGR01761         3 VQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVV   69 (343)
T ss_pred             CcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhc------CCCEEEEE
Confidence            589999995  79999999998887 899999999641  2223333   3578889999999996      45543333


Q ss_pred             C----ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154          114 T----DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (257)
Q Consensus       114 T----~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a  176 (257)
                      +    .+..+.+.+..|+++|+||+++++= ..+|.++|.++|+++|+.+.+ ..|.-.+..++++.
T Consensus        70 ipt~~P~~~H~e~a~~aL~aGkHVL~EKPl-a~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i  134 (343)
T TIGR01761        70 VRSAIVGGQGSALARALLARGIHVLQEHPL-HPRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFI  134 (343)
T ss_pred             eCCCCCCccHHHHHHHHHhCCCeEEEcCCC-CHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHH
Confidence            2    3578899999999999999999993 368899999999999988887 44666665565554

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=99.17  E-value=1.2e-09  Score=114.48  Aligned_cols=136  Identities=19%  Similarity=0.101  Sum_probs=105.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcCCCCCC---eee-ecCHHHH
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPLE---IPV-MSDLTMV   97 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~e------------Lvg~vd~~~~g~d~g~~~g~~~~~g---v~v-~~dl~~~   97 (257)
                      .|.||+|+|| |+||+.+++.+...++.+            +|.+.|...  .++..++..  -.+   +.+ +.|.+++
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~~--~~~~~~v~lDv~D~e~L  642 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVEG--IENAEAVQLDVSDSESL  642 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHHh--cCCCceEEeecCCHHHH
Confidence            3679999996 999999999999888877            788888541  223333211  013   444 6677777


Q ss_pred             HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH--HHHH
Q 025154           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL--LQQA  175 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl--l~~~  175 (257)
                      .+.+   .++|+||..+.+..+.+.++.|+++|+|+|+.+  ++.++..+|.+.|+++|+.++..-+|.-|+.-  ++++
T Consensus       643 ~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~  717 (1042)
T PLN02819        643 LKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKM  717 (1042)
T ss_pred             HHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHH
Confidence            6421   269999999999999999999999999999766  77788899999999999999999999999953  5555


Q ss_pred             HHHh
Q 025154          176 AISA  179 (257)
Q Consensus       176 a~~l  179 (257)
                      ....
T Consensus       718 Id~~  721 (1042)
T PLN02819        718 IDDA  721 (1042)
T ss_pred             HHhh
Confidence            5444

>PRK06349 homoserine dehydrogenase; Provisional

Probab=99.16  E-value=2.5e-10  Score=109.85  Aligned_cols=130  Identities=12%  Similarity=0.120  Sum_probs=100.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (257)
                      ++||+|+| +|.||+.+++.+.+++         +++|++++++... + ..   +. ...+..+++|+++++++    .
T Consensus         3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~-~~---~~-~~~~~~~~~d~~~ll~d----~   71 (426)
T PRK06349          3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-K-DR---GV-DLPGILLTTDPEELVND----P   71 (426)
T ss_pred             eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-h-cc---CC-CCcccceeCCHHHHhhC----C
Confidence            58999999 5999999998876543         6899999986421 1 11   01 12345678999999964    5


Q ss_pred             CccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154          106 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       106 ~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~  175 (257)
                      ++|+||+.|. ++.+.++++.|+++|+|||+....+..++.++|.++|+++|+.++|.+...-|+-++..+
T Consensus        72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l  142 (426)
T PRK06349         72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKAL  142 (426)
T ss_pred             CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHH
Confidence            7999999984 467799999999999999987667777888999999999999999887666666544443

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=99.16  E-value=7.2e-11  Score=93.54  Aligned_cols=110  Identities=16%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             CCChHHHHHHHHHHhcC---CcEEEEEEecC-CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCChHh
Q 025154           43 AVKEIGRAAVIAVTKAR---GMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST  118 (257)
Q Consensus        43 a~GrMG~~i~~~i~~~~---~~eLvg~vd~~-~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~  118 (257)
                      .+|.||+.+++.+.+..   +++|++++++. ....+....     ..+...+.+++++++.    ..+|||||.|.++.
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~~   71 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSEA   71 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCchH
Confidence            15999999999998776   89999999975 111111111     1245678999999864    47999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEeCCCCCH--HHHHHHHHHhhhcCceEEE
Q 025154          119 VYDNVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKASMGCLI  161 (257)
Q Consensus       119 ~~~~~~~a~~~Gi~vViGTTG~s~--e~~~~L~~~a~~~gipvl~  161 (257)
                      ..+++..++++|++||+...+.-.  ...++|.++|+++|+.++|
T Consensus        72 ~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~  116 (117)
T PF03447_consen   72 VAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY  116 (117)
T ss_dssp             HHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred             HHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence            999999999999999987665433  6788999999999988876

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.15  E-value=1.9e-10  Score=107.72  Aligned_cols=96  Identities=23%  Similarity=0.265  Sum_probs=75.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---------CCcchh-h---hhc-CCCCCCeeeecCHHHHHhc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------VGEDIG-M---VCD-MEQPLEIPVMSDLTMVLGS  100 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---------~g~d~g-~---~~g-~~~~~gv~v~~dl~~~l~~  100 (257)
                      |+||+|+|+ |+|||.+++++.++++++|+++.|+..         .|.+.. .   ... . ...+++++.++++++. 
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~-~~~~i~V~~~~~el~~-   77 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAF-EEAGIPVAGTIEDLLE-   77 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccc-cCCceEEcCChhHhhc-
Confidence            789999996 999999999999999999999998431         011100 0   000 1 1236788888888884 


Q ss_pred             cccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       101 ~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                           ++|+|||||.+..+.+++..++++|+++|+-..
T Consensus        78 -----~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~  110 (341)
T PRK04207         78 -----KADIVVDATPGGVGAKNKELYEKAGVKAIFQGG  110 (341)
T ss_pred             -----cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence                 799999999999999999999999999887554

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=99.13  E-value=1.7e-09  Score=97.90  Aligned_cols=125  Identities=9%  Similarity=0.125  Sum_probs=98.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .+||+|+|+ |.||+.+++.+...  ++++|+++.++..  .....+.+     .+++++|+++++.     .++|+||+
T Consensus         2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVVE   68 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVVE   68 (267)
T ss_pred             ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEEE
Confidence            479999995 99999999988753  4599999988642  11222321     2678899999876     48999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCC-C-CHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG-~-s~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                      ..+++++.++...++++|+++|+..+| | +++-.++|.++|+++|..+.+.+-==-|.-.+
T Consensus        69 ~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~l  130 (267)
T PRK13301         69 AAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYL  130 (267)
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHHH
Confidence            999999999999999999999999986 4 44556789999999998888866544444444

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.07  E-value=4.2e-09  Score=97.93  Aligned_cols=155  Identities=15%  Similarity=0.047  Sum_probs=115.5

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCC---CeeeecCHHHHHhccccCCC
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~---gv~v~~dl~~~l~~~~~~~~  106 (257)
                      ....+|+||+|+ |+|++-.++.+...|  +++++++.++.  ...+-+++.   ..   ..++|.++|+++.+    ..
T Consensus         3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s--~~~A~~fAq---~~~~~~~k~y~syEeLakd----~~   72 (351)
T KOG2741|consen    3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPS--LERAKEFAQ---RHNIPNPKAYGSYEELAKD----PE   72 (351)
T ss_pred             CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEeccc--HHHHHHHHH---hcCCCCCccccCHHHHhcC----CC
Confidence            345689999996 999999999998888  99999999974  233445552   33   45789999999864    67


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEc--cCchHHHHHHHHHHHHhcCCC
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIA--PTLSIGSILLQQAAISASFHY  183 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~s--pNfSlGvnll~~~a~~l~~~~  183 (257)
                      +|||..-+....+++.+..++++|+||.+.++ ..+.+|.++|-++|+++|+-+..+  .=|+-=+.-++.+..  .+.+
T Consensus        73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~--~~~~  150 (351)
T KOG2741|consen   73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS--SGVL  150 (351)
T ss_pred             cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh--cccc
Confidence            89988677778899999999999999999998 899999999999999977433310  111111112333332  3346


Q ss_pred             CCeEEEeccCCCCCC
Q 025154          184 KNVEIVESRPNARVR  198 (257)
Q Consensus       184 ~DiEIiE~HH~~K~D  198 (257)
                      -|+.-++.-|+.-..
T Consensus       151 Gdvk~v~~~~~f~~~  165 (351)
T KOG2741|consen  151 GDVKSVEVEFGFPFP  165 (351)
T ss_pred             ccceEEEEecCCCcc
Confidence            688888887776554

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.95  E-value=1.9e-08  Score=88.93  Aligned_cols=122  Identities=16%  Similarity=0.179  Sum_probs=95.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |+|+++|| |.+|+.+.+.+... -+++++++.|+..  +.+.++..   ..+....++++++++      .+|++|+..
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~~---~~~~~~~s~ide~~~------~~DlvVEaA   68 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELEA---SVGRRCVSDIDELIA------EVDLVVEAA   68 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHHh---hcCCCccccHHHHhh------ccceeeeeC
Confidence            68999995 99999999988755 4699999999642  22222221   223333488999985      799999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCC-CC-HHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG-~s-~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      +|+++.+++..++++|+++++=.+| |. ++-.++++++|+..|..+.+.+.---|+
T Consensus        69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl  125 (255)
T COG1712          69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL  125 (255)
T ss_pred             CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence            9999999999999999999988886 44 4445779999999998888766554454

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=98.94  E-value=2.1e-08  Score=91.95  Aligned_cols=127  Identities=15%  Similarity=0.201  Sum_probs=90.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ++||+|+|+ |+||+.++..+.+.+++++++++|.... .+.-..+   ...|++. ++++++++++    .++|+|++.
T Consensus         1 klrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~e-s~~la~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia   71 (285)
T TIGR03215         1 KVKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPE-SDGLARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA   71 (285)
T ss_pred             CcEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcc-cHHHHHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence            479999995 9999999877777899999999985421 1110122   2467765 5689999864    579999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCCC----HHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHIQ----LETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s----~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                      |.+..+.+++..++++|+++++.|+-+.    ..... +++..+..++.++-.+|-+ .+-++
T Consensus        72 Tp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN-~~~~~~~~~~~iv~c~~~a-tip~~  132 (285)
T TIGR03215        72 TSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVN-LDEHLDAPNVNMVTCGGQA-TIPIV  132 (285)
T ss_pred             CCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcC-HHHHhcCcCCCEEEcCcHH-HHHHH
Confidence            9999999999999999999999988541    00011 2333333447788777776 44333

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=98.89  E-value=3.2e-08  Score=89.99  Aligned_cols=126  Identities=21%  Similarity=0.265  Sum_probs=99.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+|.+.| +|..|...++.+.++|+++|||++++  .+.|+|+++++|.. ++||...++++..++-    ...+++.+
T Consensus         2 ~~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlAt----l~~~~~y~   75 (350)
T COG3804           2 SLRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLAT----LADAVIYA   75 (350)
T ss_pred             CceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeecccccceec----cccceeee
Confidence            37899999 79999999999999999999999995  37799999999996 5999999999998873    23345555


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC------CCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT------G~s~e~~~~L~~~a~~~gipvl~spNfSlG  168 (257)
                      --.|+  .+..+.++..|+|||+-.+      +..+|..+++.++|+++|..-|+....--|
T Consensus        76 ~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pG  135 (350)
T COG3804          76 PLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPG  135 (350)
T ss_pred             cccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCcc
Confidence            54563  7888899999999985321      346788889999999999877754433333

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=98.86  E-value=2.1e-08  Score=89.24  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=84.5

Q ss_pred             CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154           60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus        60 ~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      +++|++++|+..  ..+.++.   +.+|+++++|++++++     .++|+|+..|.+..+.+++..++++|++++|.++|
T Consensus         1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g   70 (229)
T TIGR03855         1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG   70 (229)
T ss_pred             CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence            478999999641  1222333   2467789999999986     47999999999999999999999999999999986


Q ss_pred             -C-CHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154          140 -I-QLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus       140 -~-s~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                       | +.++.++|.++|+++|..+++.++|--|...+
T Consensus        71 Alad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l  105 (229)
T TIGR03855        71 ALADRELRERLREVARSSGRKVYIPSGAIGGLDAL  105 (229)
T ss_pred             ccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHH
Confidence             4 56888999999999999999998777776554

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=98.85  E-value=3.5e-08  Score=91.10  Aligned_cols=141  Identities=17%  Similarity=0.187  Sum_probs=98.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .++||+|+| +|.+|+.++..+...++++|++++|.+.. .+.-..+   ...|++. +++++++++.- .-.++|+|+|
T Consensus         3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~e-s~gla~A---~~~Gi~~~~~~ie~LL~~~-~~~dIDiVf~   76 (302)
T PRK08300          3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPE-SDGLARA---RRLGVATSAEGIDGLLAMP-EFDDIDIVFD   76 (302)
T ss_pred             CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChh-hHHHHHH---HHcCCCcccCCHHHHHhCc-CCCCCCEEEE
Confidence            368999999 69999998888888899999999986421 1111122   2467876 58899998510 0026899999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCC---------CHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHI---------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY  183 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~---------s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~~  183 (257)
                      .|.+..+.+++..++++|++++.-|+-+         +.++      .....++.++-+||=+.=     .++..+.+ .
T Consensus        77 AT~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~------~~~~~~~~iia~p~~ati-----~~v~Al~~-v  144 (302)
T PRK08300         77 ATSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDE------HLDAPNVNMVTCGGQATI-----PIVAAVSR-V  144 (302)
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHH------HhcccCCCEEECccHHHH-----HHHHHhcc-c
Confidence            9999999999999999999999998854         4432      233345788888886632     22223332 2


Q ss_pred             CCeEEEecc
Q 025154          184 KNVEIVESR  192 (257)
Q Consensus       184 ~DiEIiE~H  192 (257)
                      .++++-|..
T Consensus       145 ~~~~~~eIv  153 (302)
T PRK08300        145 APVHYAEIV  153 (302)
T ss_pred             CcCceeeee
Confidence            345666665

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.85  E-value=1.3e-08  Score=94.97  Aligned_cols=123  Identities=22%  Similarity=0.258  Sum_probs=88.5

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---------CCcc---------hhhhhcCCCCCCeeeecCH
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------VGED---------IGMVCDMEQPLEIPVMSDL   94 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---------~g~d---------~g~~~g~~~~~gv~v~~dl   94 (257)
                      ..++||+++|+ |.||+.++..+...++++++++.|...         .|.+         +...+...+...+.+++|.
T Consensus        15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~   93 (438)
T COG4091          15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA   93 (438)
T ss_pred             CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence            45899999996 999999999999999999999988421         1111         1111111123457788999


Q ss_pred             HHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 025154           95 TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~s  162 (257)
                      +.++..    ...||+||.| .|+.-..+...|+.+|+++|+=---.+----..|++.|.+  .+++||
T Consensus        94 ~~i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~--~GviyS  156 (438)
T COG4091          94 ELIIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA--AGVIYS  156 (438)
T ss_pred             hhhhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhh--cCeEEe
Confidence            998875    6799999999 7999999999999999999972111110011357788888  667764

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=98.82  E-value=4.3e-08  Score=91.03  Aligned_cols=124  Identities=16%  Similarity=0.200  Sum_probs=97.3

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      +...||.|.|.|||-|+.+.+... .-+..+|+.+.+..-|.+..       ..|+|+|++++++.+.    ..+|+.|-
T Consensus        27 ~~~t~v~vqGitg~~g~~h~~~~~-~ygt~iv~GV~Pgkgg~~v~-------~~Gvpvy~sv~ea~~~----~~~D~avI   94 (317)
T PTZ00187         27 NKNTKVICQGITGKQGTFHTEQAI-EYGTKMVGGVNPKKAGTTHL-------KHGLPVFATVKEAKKA----TGADASVI   94 (317)
T ss_pred             cCCCeEEEecCCChHHHHHHHHHH-HhCCcEEEEECCCCCCceEe-------cCCccccCCHHHHhcc----cCCCEEEE
Confidence            345699999999999999999766 45899999998765343221       1279999999999863    35999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEe-CCCCCHHHHHHHHHHhh-hcCceEEEccCchHHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMGCLIAPTLSIGSI  170 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViG-TTG~s~e~~~~L~~~a~-~~gipvl~spNfSlGvn  170 (257)
                      |..|..+.+.+..|+++|++.++- |.||.+.+..+++++++ +.|+ .++.|| ++|+.
T Consensus        95 ~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~-rliGPN-c~Gii  152 (317)
T PTZ00187         95 YVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKT-RLIGPN-CPGII  152 (317)
T ss_pred             ecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCC-EEECCC-CceEE
Confidence            999999999999999999998655 55898766666777765 4565 577888 56764

>PRK06392 homoserine dehydrogenase; Provisional

Probab=98.80  E-value=7.1e-08  Score=90.05  Aligned_cols=134  Identities=19%  Similarity=0.178  Sum_probs=95.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCCCC--CCeeeec--CHHHHHh
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG   99 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-------~~~eLvg~vd~~-----~~g~d~g~~~g~~~~--~gv~v~~--dl~~~l~   99 (257)
                      |||+|+|+ |.+|+.+++.+.+.       .+++|+++.|+.     ..|-+..++.....+  ......+  +++++++
T Consensus         1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~   79 (326)
T PRK06392          1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE   79 (326)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence            59999995 99999999988764       578999999853     234444443211111  0001112  6777775


Q ss_pred             ccccCCCccEEEEcCCh-H---hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154          100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~p-~---~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~  175 (257)
                           .++||+||.|.. .   ....+++.++++|++||..--|.-....++|.++|+++|+.+.|.++..=|+-++.-+
T Consensus        80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~  154 (326)
T PRK06392         80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR  154 (326)
T ss_pred             -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence                 489999999842 1   2578889999999999975445444567889999999999999999888787665533

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.77  E-value=6.9e-08  Score=77.15  Aligned_cols=96  Identities=17%  Similarity=0.181  Sum_probs=71.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCC-CCCeeeec-CHHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQ-PLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~g~~~g~~~-~~gv~v~~-dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ||+|+||+|.+|+.+++++.++|.++++.++.+.. .|+.......... ...+.+.+ +.++ +.      ++|+|+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEE-LS------DVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHH-HT------TESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhH-hh------cCCEEEec
Confidence            79999999999999999999999999999999765 6777766543100 01233433 3343 33      79999988


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      +....+.+++..+++.|+.||==++.
T Consensus        74 ~~~~~~~~~~~~~~~~g~~ViD~s~~   99 (121)
T PF01118_consen   74 LPHGASKELAPKLLKAGIKVIDLSGD   99 (121)
T ss_dssp             SCHHHHHHHHHHHHHTTSEEEESSST
T ss_pred             CchhHHHHHHHHHhhCCcEEEeCCHH
Confidence            88889999999999999976643333

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=98.67  E-value=1.3e-07  Score=88.61  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=73.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+||+|+||+|.+|+.+++.+..+|+++|+++.++...++.+.+..+ .....+ ..++++++...     .++|+|+.
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~-----~~vD~Vf~   74 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVD-LVLEPLDPEIL-----AGADVVFL   74 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccC-ceeecCCHHHh-----cCCCEEEE
Confidence            378999999999999999999999999999999985444444432211 100001 12444444322     37999998


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      ++.+..+.+.+..++++|++||-=+..|
T Consensus        75 alP~~~~~~~v~~a~~aG~~VID~S~~f  102 (343)
T PRK00436         75 ALPHGVSMDLAPQLLEAGVKVIDLSADF  102 (343)
T ss_pred             CCCcHHHHHHHHHHHhCCCEEEECCccc
Confidence            8999999999999999999988655544

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.66  E-value=1.8e-07  Score=85.07  Aligned_cols=114  Identities=19%  Similarity=0.319  Sum_probs=96.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      .||.|.|.+|+||+.+.+...+. +..+|+.+.+.+.|..         -.++|||+++++++++    ..+|+-+.|-+
T Consensus         9 tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~Vp   74 (293)
T COG0074           9 TKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFVP   74 (293)
T ss_pred             CeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEecC
Confidence            48999999999999999998876 9999999987654433         2468999999999986    57999999999


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                      |..+.+-+..|+++|+++|+.-| |....+.-++.+.+++.| ..++.||
T Consensus        75 ~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g-~~iiGPn  123 (293)
T COG0074          75 PPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG-TRLIGPN  123 (293)
T ss_pred             cHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC-CEEECCC
Confidence            99999999999999999887755 888877778999999887 4556666

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.62  E-value=4.3e-07  Score=86.48  Aligned_cols=149  Identities=16%  Similarity=0.113  Sum_probs=101.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CC--CCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ--PLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~--~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |+||.|+|| |++|+.++..++++.+.++..+-.+......+....+. .+  ..++.-.+.+.+++.      +.|+||
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~VI   73 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLVI   73 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEEE
Confidence            789999997 99999999999888777776543221101111111000 00  011111335566775      579999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH--HHHHHHHHhcCCCCCeEEE
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISASFHYKNVEIV  189 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn--ll~~~a~~l~~~~~DiEIi  189 (257)
                      ..-.|......++.|++.|+++|- |+ ..++...++++.|+++|+.++...-|+-|+.  ++.++++.+.+..-++.|.
T Consensus        74 n~~p~~~~~~i~ka~i~~gv~yvD-ts-~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~si~iy  151 (389)
T COG1748          74 NAAPPFVDLTILKACIKTGVDYVD-TS-YYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIESIDIY  151 (389)
T ss_pred             EeCCchhhHHHHHHHHHhCCCEEE-cc-cCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhhccccEEEEE
Confidence            999999999999999999999873 44 3333337799999999999999999999994  3677777765333455555


Q ss_pred             ecc
Q 025154          190 ESR  192 (257)
Q Consensus       190 E~H  192 (257)
                      --+
T Consensus       152 ~g~  154 (389)
T COG1748         152 VGG  154 (389)
T ss_pred             Eec
Confidence            443

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=98.61  E-value=1e-06  Score=81.44  Aligned_cols=120  Identities=18%  Similarity=0.242  Sum_probs=93.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .-||.|.|.+|+-|+.+.+...+ -+..+++.+.+..-+.   +      -.|+++|.+++++.+.    ..+|.+|-+.
T Consensus        12 ~~~v~~~gi~~~~~~~~~~~~~~-ygt~~~~gV~p~~~~~---~------i~G~~~y~sv~dlp~~----~~~DlAvI~v   77 (300)
T PLN00125         12 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT---E------HLGLPVFNTVAEAKAE----TKANASVIYV   77 (300)
T ss_pred             CCeEEEecCCCHHHHHHHHHHHH-hCCcEEEEECCCCCCc---e------EcCeeccCCHHHHhhc----cCCCEEEEec
Confidence            45999999999999999987654 5999999998742111   1      2488999999999851    1379999999


Q ss_pred             ChHhHHHHHHHHHHcCCC-eEEeCCCCCHHH-HHHHHHHhhhcCceEEEccCchHHHH
Q 025154          115 DASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~-vViGTTG~s~e~-~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      .++.+.+.++.|.++|++ +||-|.||.+.. .+++.++|+++|+. ++.|| ++|+.
T Consensus        78 Pa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gir-viGPN-c~Gii  133 (300)
T PLN00125         78 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTR-LIGPN-CPGII  133 (300)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCE-EECCC-Cceee
Confidence            999999999999999999 556677998653 35566778887764 56788 56763

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=98.57  E-value=1.3e-06  Score=80.23  Aligned_cols=119  Identities=16%  Similarity=0.288  Sum_probs=93.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .-||.|.|.+|++|+.+.+.+... ++.+++.+.+.. +.  .+      -.|++.|.+++++-+.    .++|++|-+.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~-~~--~~------v~G~~~y~sv~dlp~~----~~~Dlavi~v   71 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFDSVKEAVEE----TGANASVIFV   71 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCC-Cc--ce------ecCeeccCCHHHHhhc----cCCCEEEEec
Confidence            458999999999999999988654 666888887642 11  11      2588999999998751    1289999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeE-EeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          115 DASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vV-iGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      .++.+.+.++.|.+.|++.+ |=|.||.+...++|.+.|+++|+.++ .|| ++|+
T Consensus        72 pa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~giril-GPN-c~Gi  125 (286)
T TIGR01019        72 PAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLI-GPN-CPGI  125 (286)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE-CCC-CceE
Confidence            99999999999999998665 66779987766789999999987654 677 4565

ATP citrate lyases appear to form an outgroup.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=98.54  E-value=1e-06  Score=67.86  Aligned_cols=89  Identities=21%  Similarity=0.308  Sum_probs=71.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      .+.||+|+|+ |++|++++.......++.+++++|..  ..|+.         -.++++|++++++.+.    .++|+.|
T Consensus         2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~---------i~gipV~~~~~~l~~~----~~i~iai   67 (96)
T PF02629_consen    2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKE---------IGGIPVYGSMDELEEF----IEIDIAI   67 (96)
T ss_dssp             TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSE---------ETTEEEESSHHHHHHH----CTTSEEE
T ss_pred             CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcE---------ECCEEeeccHHHhhhh----hCCCEEE
Confidence            3579999996 99999998667778899999999943  33322         2489999999999874    2499999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEe
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      -+.+++.+.+.+..+++.|+..|+-
T Consensus        68 i~VP~~~a~~~~~~~~~~gIk~i~n   92 (96)
T PF02629_consen   68 ITVPAEAAQEVADELVEAGIKGIVN   92 (96)
T ss_dssp             EES-HHHHHHHHHHHHHTT-SEEEE
T ss_pred             EEcCHHHHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999999988754

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=98.54  E-value=2.1e-06  Score=79.12  Aligned_cols=117  Identities=18%  Similarity=0.293  Sum_probs=92.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCC--ccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA--RAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~--~DVvID  112 (257)
                      +.||.|.|.+|++|+.+.+.+.+. +++.+..+.+.. +.  .+      -.|++.|.+++++-+      .  +|++|-
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~~--~~------v~G~~~y~sv~dlp~------~~~~DlAvi   71 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFNTVAEAVE------ATGANASVI   71 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-CC--Ce------EeCeeccCCHHHHhh------ccCCCEEEE
Confidence            469999999999999999998754 455565565531 11  11      247899999999985      4  899998


Q ss_pred             cCChHhHHHHHHHHHHcCCCe-EEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~v-ViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      +..++.+.+.++.|.++|++. ||=|.||..++.++|.++|+++|+.+ +.|| ++|+
T Consensus        72 ~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girv-lGPN-c~Gi  127 (291)
T PRK05678         72 YVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRL-IGPN-CPGI  127 (291)
T ss_pred             EcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE-ECCC-CCcc
Confidence            999999999999999999876 56677998765668999999988865 4788 4576

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.52  E-value=1.6e-06  Score=81.62  Aligned_cols=137  Identities=15%  Similarity=0.123  Sum_probs=91.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc---------CCcEEEEEEecCC-----CCcchhhhhcCCC-CCCe--eeecCHHHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTMV   97 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~-----~g~d~g~~~g~~~-~~gv--~v~~dl~~~   97 (257)
                      +++|+|+| .|.+|+.+++.+.++         -+++|+++.++..     .|-+...++.... ....  ....+.++.
T Consensus         2 ~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (346)
T PRK06813          2 KIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER   80 (346)
T ss_pred             eeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence            58999999 599999999998644         2578999988531     1222222221100 0000  012233333


Q ss_pred             HhccccCCCccEEEEcCCh-----HhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154           98 LGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT~p-----~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                      +..   ..+.||+||.|..     +..+.+++.|+++|++||..-=+.-....++|.++|+++|+.++|-++..=|+-++
T Consensus        81 ~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI  157 (346)
T PRK06813         81 ATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTL  157 (346)
T ss_pred             hcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchH
Confidence            321   0258999999854     56789999999999999965434444566889999999999999999888887665


Q ss_pred             HHH
Q 025154          173 QQA  175 (257)
Q Consensus       173 ~~~  175 (257)
                      .-+
T Consensus       158 ~~l  160 (346)
T PRK06813        158 DIG  160 (346)
T ss_pred             HHH
Confidence            444

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.50  E-value=9.5e-07  Score=83.34  Aligned_cols=132  Identities=18%  Similarity=0.154  Sum_probs=86.9

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecC---HHHHHhccccCCCccEE
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARAVV  110 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~DVv  110 (257)
                      |+|+|+ |.||+.+++.+.+....+-+.+.|++.  ..+..+...-....+..    ..|   +++++.      +.|||
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~------~~dvV   71 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLR------GCDVV   71 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT------TSSEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHh------cCCEE
Confidence            789998 999999999999888773334455431  11122221000112211    123   455664      68999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH--HHHHHHHHhc
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISAS  180 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn--ll~~~a~~l~  180 (257)
                      |+...|......++.|++.|++.|-  |.+-.++..++.+.++++|+.++.+.-|.-|+.  ++.++++.+.
T Consensus        72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~  141 (386)
T PF03435_consen   72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD  141 (386)
T ss_dssp             EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred             EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence            9999999999999999999999986  544345667899999999999999999999984  3566666665

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.42  E-value=3.9e-06  Score=67.03  Aligned_cols=110  Identities=20%  Similarity=0.330  Sum_probs=76.3

Q ss_pred             eEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +|+|+|++   ++.|..+.+.+.+ .++++..+ ++.  +   ++      -.|.++|.++++. .     ..+|+++-|
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~--~---~~------i~G~~~y~sl~e~-p-----~~iDlavv~   62 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPK--G---GE------ILGIKCYPSLAEI-P-----EPIDLAVVC   62 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STT--C---SE------ETTEE-BSSGGGC-S-----ST-SEEEE-
T ss_pred             EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCC--c---eE------ECcEEeeccccCC-C-----CCCCEEEEE
Confidence            69999987   8899999999887 77887754 332  1   12      2478899999983 3     489999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      +.|+...+.++.|.+.|+.-|+=.+|   +..+++.++|+++|+.++ .|| ++|+.
T Consensus        63 ~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vi-gp~-C~gv~  114 (116)
T PF13380_consen   63 VPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVI-GPN-CLGVV  114 (116)
T ss_dssp             S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEE-ESS--HHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEE-eCC-cceEE
Confidence            99999999999999999999988888   334578888999888755 455 66653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.39  E-value=3.4e-06  Score=70.62  Aligned_cols=113  Identities=19%  Similarity=0.155  Sum_probs=75.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |+||+++| .|+||+.+++.+. ..++++. ++|+..  ....++.    ..++...+++.++.+      .+|+||-+-
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLA-KAGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHH-HTTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred             CCEEEEEc-hHHHHHHHHHHHH-hcCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence            78999999 5999999999987 4688876 577531  1223333    346888999999996      689988765


Q ss_pred             C-hHhHHHHHHH--HH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          115 D-ASTVYDNVKQ--AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       115 ~-p~~~~~~~~~--a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      . ++++.+.+..  .+   ..|. +++-+|..++++.+++.+.+++.|+..+=+|
T Consensus        66 ~~~~~v~~v~~~~~i~~~l~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~vdap  119 (163)
T PF03446_consen   66 PDDDAVEAVLFGENILAGLRPGK-IIIDMSTISPETSRELAERLAAKGVRYVDAP  119 (163)
T ss_dssp             SSHHHHHHHHHCTTHGGGS-TTE-EEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccchhhhhhhhhhHHhhccccce-EEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence            4 4555555543  33   3344 4556666778888899999888887777666

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=98.26  E-value=7e-06  Score=76.89  Aligned_cols=94  Identities=18%  Similarity=0.235  Sum_probs=66.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc------CCC-CCCeeeecCHHHHHhccccCCCc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD------MEQ-PLEIPVMSDLTMVLGSISQSKAR  107 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~~~g------~~~-~~gv~v~~dl~~~l~~~~~~~~~  107 (257)
                      |||+|+|++|.||+.+++++.++++++|++++++. ..|++..++..      ... -....+.+...+.+      .++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~   74 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS------KDV   74 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh------ccC
Confidence            58999999999999999999988999999998743 44655544321      100 01112211111223      379


Q ss_pred             cEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154          108 AVVIDFTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       108 DVvIDFT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      |+|+.++.+..+.++...+.+.|+.+|.
T Consensus        75 DvVf~a~p~~~s~~~~~~~~~~G~~VID  102 (341)
T TIGR00978        75 DIVFSALPSEVAEEVEPKLAEAGKPVFS  102 (341)
T ss_pred             CEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence            9999888888899999999999999875

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.24  E-value=7.4e-06  Score=76.97  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=69.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCC------C-CCCeeee-cCHHHHHhccccCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDME------Q-PLEIPVM-SDLTMVLGSISQSK  105 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~g~~~g~~------~-~~gv~v~-~dl~~~l~~~~~~~  105 (257)
                      |+||+|+|++|.+|+.+++.+..+|+++|+++ .+....|++...+....      . ...+.+. .+++. +.      
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~------   75 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD------   75 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc------
Confidence            68999999999999999999999999999998 44335565554332110      0 0112332 24444 33      


Q ss_pred             CccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ++|+|++++....+.+++..+.+.|+.+|.-+.
T Consensus        76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~  108 (349)
T PRK08664         76 DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS  108 (349)
T ss_pred             CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence            699999888888888898988899999886554

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=98.22  E-value=1e-05  Score=76.02  Aligned_cols=99  Identities=17%  Similarity=0.164  Sum_probs=68.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc-CCCCCCeeee-cCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVM-SDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~~~g-~~~~~gv~v~-~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |||+|+||||.+|+.+++.+.++|+++|++++++. ..|+.+.+... .....+..+. .+.+++++      ++|+++-
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE------DADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc------CCCEEEE
Confidence            68999999999999999999999999999887743 34555443221 0000011221 14555543      6999886


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      .+....+.+.+..+++.|++||-=++.|
T Consensus        75 alP~~~s~~~~~~~~~~G~~VIDlS~~f  102 (346)
T TIGR01850        75 ALPHGVSAELAPELLAAGVKVIDLSADF  102 (346)
T ss_pred             CCCchHHHHHHHHHHhCCCEEEeCChhh
Confidence            6667788899999999998887544443

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=5.9e-06  Score=76.89  Aligned_cols=102  Identities=24%  Similarity=0.226  Sum_probs=66.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeeecCH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVMSDL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~-------------~~g~d~g~~------~g~~~~~gv~v~~dl   94 (257)
                      |+||+|+| +||+||.+++++.+++ ++|+||+-|..             -.|.-.+++      .-. ...+++++...
T Consensus         1 ~ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v-~g~~I~v~~~~   78 (335)
T COG0057           1 MIKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVV-NGKGIKVLAER   78 (335)
T ss_pred             CcEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEE-CCceEEEEecC
Confidence            68999999 6999999999999988 79999998821             011111110      000 12356666555


Q ss_pred             H-HHHhccccCCCccEEEEcCChHhHHHHHHHHHHcC--CCeEEeCCCC
Q 025154           95 T-MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHI  140 (257)
Q Consensus        95 ~-~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~G--i~vViGTTG~  140 (257)
                      + +.|.-  ++...|+|||.|.--...++...-++.|  +.|+++-++-
T Consensus        79 ~p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~  125 (335)
T COG0057          79 DPANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGK  125 (335)
T ss_pred             ChHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCC
Confidence            5 44432  1235679999886655677777666665  6667766653

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.16  E-value=1.8e-05  Score=73.98  Aligned_cols=132  Identities=16%  Similarity=0.133  Sum_probs=89.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhhcCCCCCC-eeeecCH-----HHHH
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDL-----TMVL   98 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~~g~d~g~~~g~~~~~g-v~v~~dl-----~~~l   98 (257)
                      .++||+|+| .|.+|+.+++.+.+.         -+++++++.+++..  ....+    +..+ -...++.     .+++
T Consensus         2 ~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~   74 (333)
T COG0460           2 KTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGS--LVRDL----DLLNAEVWTTDGALSLGDEVL   74 (333)
T ss_pred             ceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccch--hcccc----cccchhhheecccccccHhhh
Confidence            368999999 599999999998764         36788999986411  00000    0111 1123333     3444


Q ss_pred             hccccCCCccEEEEcCCh--HhH--HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154           99 GSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (257)
Q Consensus        99 ~~~~~~~~~DVvIDFT~p--~~~--~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~  174 (257)
                      ..    ...||+|+.+..  +..  .++++.++++|+|||..==+.-.....+|.++|+++|+.++|=++-.=|+-++.-
T Consensus        75 ~~----~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~  150 (333)
T COG0460          75 LD----EDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKL  150 (333)
T ss_pred             cc----ccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHH
Confidence            32    578999997632  333  4999999999999984322455566889999999999999988877777755443


Q ss_pred             HH
Q 025154          175 AA  176 (257)
Q Consensus       175 ~a  176 (257)
                      +-
T Consensus       151 lr  152 (333)
T COG0460         151 LR  152 (333)
T ss_pred             HH
Confidence            33

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.12  E-value=6.6e-05  Score=66.21  Aligned_cols=122  Identities=11%  Similarity=0.057  Sum_probs=75.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ++||+|+|+ |+||+.+++.+....  ..+-+.+++++. .+....+.   .++++.+++|++++++      ++|+||-
T Consensus         4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii   72 (245)
T PRK07634          4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL   72 (245)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence            479999995 999999999887553  344233344321 11122222   2356777889988885      7999998


Q ss_pred             cCChHhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~--~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      .+.|..+.+.++....  .+..+|.-+-|++.+.   |++.......-+..-||+..-+.
T Consensus        73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~---l~~~~~~~~~v~r~~Pn~a~~v~  129 (245)
T PRK07634         73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSY---LEERLPKGTPVAWIMPNTAAEIG  129 (245)
T ss_pred             ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHH---HHHHcCCCCeEEEECCcHHHHHh
Confidence            9988888777765432  2444555555888765   44443321112234588776553

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.11  E-value=3.5e-05  Score=72.02  Aligned_cols=89  Identities=16%  Similarity=0.142  Sum_probs=62.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |+||+|+||+|..|+.+++++.+  .|.++|+++......|+... +.    ...+.+.+.....+.      ++|+||.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~----g~~i~v~d~~~~~~~------~vDvVf~   69 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FK----GKELKVEDLTTFDFS------GVDIALF   69 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eC----CceeEEeeCCHHHHc------CCCEEEE
Confidence            58999999999999999999987  58889998765544454432 11    122333322222332      7999997


Q ss_pred             cCChHhHHHHHHHHHHcCCCeE
Q 025154          113 FTDASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      .+....+.+.+..+++.|+.||
T Consensus        70 A~g~g~s~~~~~~~~~~G~~VI   91 (334)
T PRK14874         70 SAGGSVSKKYAPKAAAAGAVVI   91 (334)
T ss_pred             CCChHHHHHHHHHHHhCCCEEE
Confidence            7766777888888889998555

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=98.09  E-value=4.7e-05  Score=79.08  Aligned_cols=140  Identities=18%  Similarity=0.205  Sum_probs=91.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcC--------CcEEEEEEecC-----CCCcchhhhhcCCCCCCeeeecCHHHHHhc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~-----~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~  100 (257)
                      .+++|+|+| .|.+|+.+++.+.+..        +++++++.++.     ..|-+...+.....  ...-..+.+.+++.
T Consensus       464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~  540 (819)
T PRK09436        464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELA--EAGEPFDLDRLIRL  540 (819)
T ss_pred             ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHh--hccCCCCHHHHHHH
Confidence            579999999 5999999999986543        57789988743     11223222211000  00001122332211


Q ss_pred             cc-cCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCH---HHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154          101 IS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (257)
Q Consensus       101 ~~-~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~---e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a  176 (257)
                      +. .....||+||.|.-+....+...|+++|++||..--+.-.   ++.++|.++|+++|+.+.|.++..=|+-++.-+-
T Consensus       541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~  620 (819)
T PRK09436        541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQ  620 (819)
T ss_pred             HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHH
Confidence            10 0014589999997666677778999999999965433322   5789999999999999999998888886654443

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.06  E-value=1.2e-05  Score=75.30  Aligned_cols=94  Identities=21%  Similarity=0.180  Sum_probs=67.6

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcC------------CCCCCeeeecCHHHHHhccccC
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDM------------EQPLEIPVMSDLTMVLGSISQS  104 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~~~g~------------~~~~gv~v~~dl~~~l~~~~~~  104 (257)
                      |||+| +|++|+.+++.+.+.++++||++.|.... ...+....+.            ..+.++.+..++++++.     
T Consensus         1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~-----   74 (333)
T TIGR01546         1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE-----   74 (333)
T ss_pred             CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence            68999 59999999999988899999999984210 0011111110            01235677788999985     


Q ss_pred             CCccEEEEcCChHhHHHHHHHHHHcCCCeE-EeCC
Q 025154          105 KARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVP  138 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vV-iGTT  138 (257)
                       .+|+|++.|....+..+....++.|...| +|.+
T Consensus        75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence             79999999987778888888888886655 5444

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.05  E-value=2e-05  Score=72.89  Aligned_cols=123  Identities=15%  Similarity=0.183  Sum_probs=76.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCCCCCCeeeecCHHHHHhccccC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DMEQPLEIPVMSDLTMVLGSISQS  104 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~----------g~~~~~gv~v~~dl~~~l~~~~~~  104 (257)
                      +|||+|+|+ |.||..++..+.. .++++. ++++..  .....+.          +...+..+..+++++++++     
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~-~G~~V~-~~~r~~--~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~-----   73 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAAS-KGVPVR-LWARRP--EFAAALAAERENREYLPGVALPAELYPTADPEEALA-----   73 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc-----
Confidence            579999995 9999999998874 467755 455421  1111111          1000111456778888774     


Q ss_pred             CCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHH--HHHHHHHhhh---cCceEEEccCchHHH
Q 025154          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCDK---ASMGCLIAPTLSIGS  169 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~--~~~L~~~a~~---~gipvl~spNfSlGv  169 (257)
                       .+|+||-+..+..+.+.+ ..++.+..+|.-++|++.++  .+.+.+...+   .++.++-.||+.-=+
T Consensus        74 -~aD~Vi~~v~~~~~~~v~-~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~  141 (328)
T PRK14618         74 -GADFAVVAVPSKALRETL-AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEI  141 (328)
T ss_pred             -CCCEEEEECchHHHHHHH-HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHH
Confidence             789988776666554444 34456777777788886443  4455555443   567788899987653

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.03  E-value=8.8e-05  Score=67.46  Aligned_cols=115  Identities=19%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++||+|+| .|.||+.+++.+.. .++++. ++|+..  .....+.    ..++.+.++++++++      ++|+||...
T Consensus         2 ~~~IgviG-~G~mG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIG-LGIMGKPMSKNLLK-AGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITML   66 (296)
T ss_pred             CceEEEEc-cCHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEeC
Confidence            57999999 59999999998874 678876 466531  1222222    245667788888885      799998776


Q ss_pred             ChHhHHHHHH-------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       115 ~p~~~~~~~~-------~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      .+......+.       ..+..|. +|+-++..++...+++.+.+++.|+.++-+|=|
T Consensus        67 p~~~~~~~v~~~~~~~~~~~~~g~-iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~  123 (296)
T PRK11559         67 PNSPHVKEVALGENGIIEGAKPGT-VVIDMSSIAPLASREIAAALKAKGIEMLDAPVS  123 (296)
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCc-EEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCC
Confidence            5444333331       2223344 444455556667778888887778888887744

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.03  E-value=2.4e-05  Score=70.01  Aligned_cols=152  Identities=15%  Similarity=0.194  Sum_probs=110.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..||.+-|.+||-|..+.+... +-+..+||.+.+.+.|.         ..+|.||+.+..++.++    .++|.-+.|-
T Consensus        38 ~TkVi~QGfTGKqgTFHs~q~~-eYgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyV  103 (329)
T KOG1255|consen   38 DTKVICQGFTGKQGTFHSQQAL-EYGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYV  103 (329)
T ss_pred             CceEEEecccCCccceeHHHHH-HhCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEe
Confidence            4699999999999999998766 56899999998865443         25789999999999876    6899888899


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCCCCCeEEEe--c
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE--S  191 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~~~DiEIiE--~  191 (257)
                      .|..+..-+..+++.-+|+++.-| |....+.-+++..-....-.=|+.||-- |+         ..+....|-|+-  .
T Consensus       104 Ppp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCP-GI---------I~p~qckIGImPg~I  173 (329)
T KOG1255|consen  104 PPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCP-GI---------INPGQCKIGIMPGHI  173 (329)
T ss_pred             CChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCC-Cc---------cCccceeeccccccc
Confidence            999999999999999999998866 8876665666666554445677788853 44         111122333332  2


Q ss_pred             cCCCCCC--CCCccHHHHHHh
Q 025154          192 RPNARVR--YMTRTLISMQVC  210 (257)
Q Consensus       192 HH~~K~D--apSGTa~~l~~~  210 (257)
                      |-+-|+-  ++|||+..=+++
T Consensus       174 hk~G~IGIVSRSGTLTYEaVh  194 (329)
T KOG1255|consen  174 HKRGKIGIVSRSGTLTYEAVH  194 (329)
T ss_pred             ccCCeeEEEecCCceeehhhh
Confidence            3333333  588887655443

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.01  E-value=5.6e-05  Score=67.64  Aligned_cols=100  Identities=10%  Similarity=0.049  Sum_probs=66.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ||||+|+|+ |.||+.+++.+.+.. ...-+.++++..  +....+.   ..+++.++++.+++++      .+|+||-.
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~~------~advVil~   69 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAAQ------EADVVVLA   69 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHHh------cCCEEEEE
Confidence            789999995 999999999877542 123455666531  1122222   1236667788888774      78999988


Q ss_pred             CChHhHHHHHHHHHHc-CCCeEEeCCCCCHHHHH
Q 025154          114 TDASTVYDNVKQATAF-GMRSVVYVPHIQLETVS  146 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~-Gi~vViGTTG~s~e~~~  146 (257)
                      +.|....+.++.+..+ +..||.-+.|.+.++++
T Consensus        70 v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~  103 (267)
T PRK11880         70 VKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLE  103 (267)
T ss_pred             cCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHH
Confidence            8888888877766543 44555556688765544

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=97.99  E-value=4.4e-05  Score=63.69  Aligned_cols=33  Identities=39%  Similarity=0.434  Sum_probs=30.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||+|+|+ ||||+.+++.+.+.++++|+++.|.
T Consensus         1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence            68999996 9999999999988899999999984

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PLN02700 homoserine dehydrogenase family protein

Probab=97.98  E-value=7.7e-05  Score=71.02  Aligned_cols=136  Identities=17%  Similarity=0.253  Sum_probs=85.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC--------CcEEEEEEecC-----C----CCcchhhhhc---C-CCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----S----VGEDIGMVCD---M-EQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~-----~----~g~d~g~~~g---~-~~~~gv~v~--   91 (257)
                      +++|+|+| .|.+|+.+++.+.+..        ++.++++.++.     .    .|-|...+..   . .....+.-+  
T Consensus         3 ~i~i~liG-~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~   81 (377)
T PLN02700          3 KIPVLLLG-CGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA   81 (377)
T ss_pred             EEEEEEEe-cChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence            47999999 5999999999876543        36788888853     1    1333222211   0 000101000  


Q ss_pred             -----------------cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154           92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (257)
Q Consensus        92 -----------------~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~  154 (257)
                                       .+..+.+.+    ...+|+||.|.-....++.+.++++|++||..-=+......+++.++++ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-  156 (377)
T PLN02700         82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-  156 (377)
T ss_pred             ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-
Confidence                             122232321    3469999999877778999999999999995433322233445666654 


Q ss_pred             cCceEEEccCchHHHHHHHHHH
Q 025154          155 ASMGCLIAPTLSIGSILLQQAA  176 (257)
Q Consensus       155 ~gipvl~spNfSlGvnll~~~a  176 (257)
                      +|+.++|.+|..-|+-++.-+-
T Consensus       157 ~~~~~~yEatVgaGlPiI~tl~  178 (377)
T PLN02700        157 HPRRIRHESTVGAGLPVIASLN  178 (377)
T ss_pred             cCCeEEEEeeeeeccchHHHHH
Confidence            5799999998888876654443

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.97  E-value=9.7e-05  Score=71.73  Aligned_cols=114  Identities=18%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             CceEEEEcCC---ChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           35 NIKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      +-+|+|+|++   |++|..+.+.+.+ .++  ++. .+++..     .+      -.|+++|.+++++-+      .+|+
T Consensus         7 p~siavvGaS~~~~~~g~~~~~~l~~-~gf~g~v~-~Vnp~~-----~~------i~G~~~~~sl~~lp~------~~Dl   67 (447)
T TIGR02717         7 PKSVAVIGASRDPGKVGYAIMKNLIE-GGYKGKIY-PVNPKA-----GE------ILGVKAYPSVLEIPD------PVDL   67 (447)
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHh-CCCCCcEE-EECCCC-----Cc------cCCccccCCHHHCCC------CCCE
Confidence            4479999987   8899999998874 444  443 344431     12      247889999999853      7999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeE-EeCCCCCH------HHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vV-iGTTG~s~------e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      +|-|+.|+.+.+.++.|.+.|++.+ +=|.||.+      +..++|.++|+++|+.++ .|| ++|+
T Consensus        68 avi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl-GPn-c~G~  132 (447)
T TIGR02717        68 AVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL-GPN-CLGI  132 (447)
T ss_pred             EEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE-ecC-eeeE
Confidence            9999999999999999999998765 55668864      224679999999888755 566 3554

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.94  E-value=0.00011  Score=65.85  Aligned_cols=117  Identities=9%  Similarity=0.056  Sum_probs=72.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcE--EEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e--Lvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |||+++| +|+||+.+++.+... +..  .+.+.++..  ....++..   .. ++.++++.+++++      ++|+||-
T Consensus         1 m~IgiIG-~G~mG~aia~~L~~~-g~~~~~i~v~~r~~--~~~~~l~~---~~~~~~~~~~~~~~~~------~aDvVil   67 (258)
T PRK06476          1 MKIGFIG-TGAITEAMVTGLLTS-PADVSEIIVSPRNA--QIAARLAE---RFPKVRIAKDNQAVVD------RSDVVFL   67 (258)
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhC-CCChheEEEECCCH--HHHHHHHH---HcCCceEeCCHHHHHH------hCCEEEE
Confidence            5899999 599999999988754 333  244555431  11222221   22 4667788888875      6899998


Q ss_pred             cCChHhHHHHHHHH-HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154          113 FTDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus       113 FT~p~~~~~~~~~a-~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG  168 (257)
                      .+.|+...+.+... ...+..+|.-..|.+.++++.+   .+.....+...||...-
T Consensus        68 av~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~---~~~~~~~~r~~P~~~~a  121 (258)
T PRK06476         68 AVRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEW---IGHDVKLVRAIPLPFVA  121 (258)
T ss_pred             EeCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHH---hCCCCCEEEECCCChhh
Confidence            88887777766543 2345556654557777655444   33322345556664443

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=97.93  E-value=2.6e-05  Score=65.27  Aligned_cols=33  Identities=39%  Similarity=0.464  Sum_probs=31.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||+|+| +||+||.+.+.+..+++++|+++-|.
T Consensus         1 ikVgING-fGRIGR~v~r~~~~~~~~evvaInd~   33 (151)
T PF00044_consen    1 IKVGING-FGRIGRLVLRAALDQPDIEVVAINDP   33 (151)
T ss_dssp             EEEEEES-TSHHHHHHHHHHHTSTTEEEEEEEES
T ss_pred             CEEEEEC-CCcccHHHHHhhcccceEEEEEEecc
Confidence            6999999 59999999999999999999999885

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.90  E-value=6.6e-05  Score=65.67  Aligned_cols=91  Identities=23%  Similarity=0.335  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVv  110 (257)
                      ...||+|+|+ |.+|+.+++... ...+++++|++|...  ...+...     .++++  ++++++++.+    ..+|++
T Consensus        83 ~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~--~~~~~~i-----~g~~v~~~~~l~~li~~----~~iD~V  150 (213)
T PRK05472         83 RTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDP--EKIGTKI-----GGIPVYHIDELEEVVKE----NDIEIG  150 (213)
T ss_pred             CCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECCh--hhcCCEe-----CCeEEcCHHHHHHHHHH----CCCCEE
Confidence            4579999995 999999998643 467899999999531  1111111     13333  4577777753    579999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      |..+.+....+....++++|+..|.-
T Consensus       151 iIa~P~~~~~~i~~~l~~~Gi~~il~  176 (213)
T PRK05472        151 ILTVPAEAAQEVADRLVEAGIKGILN  176 (213)
T ss_pred             EEeCCchhHHHHHHHHHHcCCCEEee
Confidence            98887788888899999999766543

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=97.89  E-value=4.1e-05  Score=71.84  Aligned_cols=97  Identities=23%  Similarity=0.134  Sum_probs=65.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhhcCCC-----CCCeeee--cC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVCDMEQ-----PLEIPVM--SD   93 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g~~~g~~~-----~~gv~v~--~d   93 (257)
                      ++||+|+|+ |||||.+.+.+.++++++|+++.|+..              .|+--+.+...+.     ...+.++  .+
T Consensus         2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~   80 (334)
T PRK08955          2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA   80 (334)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence            489999997 999999999998889999999998310              1111111100000     0123333  25


Q ss_pred             HHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      ++++-=     .++|+||+.|-.....+.+...++.|...|+=+
T Consensus        81 ~~~~~w-----~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iS  119 (334)
T PRK08955         81 IADTDW-----SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVT  119 (334)
T ss_pred             hhhCCc-----cCCCEEEEccchhhcHHHHHHHHHCCCEEEEEC
Confidence            555432     379999999988888999999999997666533

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.88  E-value=9.8e-05  Score=58.58  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=58.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCeeeecCHH-HHHhccccCCCccEEEEcC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvIDFT  114 (257)
                      ||+|+|++|++|+.+++.+...++++++++++++ ..++.+....+   ...-.++.+++ +.++.    .++|+|+..+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~DvV~~~~   73 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE----LAVDIVFLAL   73 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh----cCCCEEEEcC
Confidence            6899998899999999999988999999997743 33444433211   11101111221 11111    3789998777


Q ss_pred             ChHhHHHHH---HHHHHcCCCeEE
Q 025154          115 DASTVYDNV---KQATAFGMRSVV  135 (257)
Q Consensus       115 ~p~~~~~~~---~~a~~~Gi~vVi  135 (257)
                      .++.+.+.+   ..+++.|+.+|=
T Consensus        74 ~~~~~~~~~~~~~~~~~~g~~viD   97 (122)
T smart00859       74 PHGVSKEIAPLLPKAAEAGVKVID   97 (122)
T ss_pred             CcHHHHHHHHHHHhhhcCCCEEEE
Confidence            777777753   444578887663

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.87  E-value=9.6e-05  Score=67.59  Aligned_cols=121  Identities=19%  Similarity=0.238  Sum_probs=69.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC----------CCCCCeeeecCHHHHHhccccC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM----------EQPLEIPVMSDLTMVLGSISQS  104 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~----------~~~~gv~v~~dl~~~l~~~~~~  104 (257)
                      ||||+|+|+ |.||..++..+.. .+.++ .++++..  .....+...          ..+.++...++++++++     
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~-~g~~V-~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   70 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLAR-NGHDV-TLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA-----   70 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCEE-EEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh-----
Confidence            689999995 9999999998874 56775 4566421  111111100          00124556778887774     


Q ss_pred             CCccEEEEcCChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhh-----cCceEEEccCch
Q 025154          105 KARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK-----ASMGCLIAPTLS  166 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~-----~gipvl~spNfS  166 (257)
                       ++|++|-++.+....+.+.....   .+..+|.-+.|++.+..+.+.+..++     ....++..||+.
T Consensus        71 -~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~  139 (325)
T PRK00094         71 -DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFA  139 (325)
T ss_pred             -CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHH
Confidence             78999977766555555444333   34444444436665433223222222     135677888864

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.87  E-value=9.8e-05  Score=70.46  Aligned_cols=98  Identities=12%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHH-HhccccCCCccEEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSISQSKARAVVI  111 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~-l~~~~~~~~~DVvI  111 (257)
                      ..++||+|+||+|..|+.+++++.++|+++|+.+......|+.+......-.........+++.. ++      +.|+|+
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~------~~DvVf  109 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS------DVDAVF  109 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc------CCCEEE
Confidence            35679999999999999999999999999999887644445443221100000111212222322 32      689888


Q ss_pred             EcCChH-hHHHHHHHHHHcCCCeEEeCC
Q 025154          112 DFTDAS-TVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       112 DFT~p~-~~~~~~~~a~~~Gi~vViGTT  138 (257)
                       |..|. ...+.+.. ++.|+.||-=++
T Consensus       110 -~Alp~~~s~~i~~~-~~~g~~VIDlSs  135 (381)
T PLN02968        110 -CCLPHGTTQEIIKA-LPKDLKIVDLSA  135 (381)
T ss_pred             -EcCCHHHHHHHHHH-HhCCCEEEEcCc
Confidence             55555 55566665 578876664443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.85  E-value=0.00013  Score=55.19  Aligned_cols=87  Identities=15%  Similarity=0.093  Sum_probs=58.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ||+++| +|+||+++++.+.+..  ..++.-+.++.  .+.+.++.   ..+++.++. +..++++      .+|++|-.
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~--~~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila   68 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRS--PEKAAELA---KEYGVQATADDNEEAAQ------EADVVILA   68 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESS--HHHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCc--HHHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence            799999 5999999999987542  26666555543  12233333   245565555 7888885      69999988


Q ss_pred             CChHhHHHHHHHH--HHcCCCeEE
Q 025154          114 TDASTVYDNVKQA--TAFGMRSVV  135 (257)
Q Consensus       114 T~p~~~~~~~~~a--~~~Gi~vVi  135 (257)
                      ..|....+.+...  ...++-+|.
T Consensus        69 v~p~~~~~v~~~i~~~~~~~~vis   92 (96)
T PF03807_consen   69 VKPQQLPEVLSEIPHLLKGKLVIS   92 (96)
T ss_dssp             S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred             ECHHHHHHHHHHHhhccCCCEEEE
Confidence            8888888877665  556666654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.84  E-value=0.00023  Score=67.62  Aligned_cols=118  Identities=9%  Similarity=0.075  Sum_probs=74.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeeec--CHHHHHhccccCCCccE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DV  109 (257)
                      |+||+|+||||-.|+.+++.+.+++++.   ++. +.+...|...-.+.+    ....+.+  +.++ +.      ++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g----~~~~v~~~~~~~~-~~------~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGG----KEGTLQDAFDIDA-LK------KLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCC----CcceEEecCChhH-hc------CCCE
Confidence            6899999999999999999788899998   777 443322333222222    1223333  3333 33      6898


Q ss_pred             EEEcC-ChHhHHHHHHHHHHcCCC-eEEeC--------------CCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          110 VIDFT-DASTVYDNVKQATAFGMR-SVVYV--------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       110 vIDFT-~p~~~~~~~~~a~~~Gi~-vViGT--------------TG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      ++ |+ ..+.+.+.+..+.+.|++ +||=-              +.++.++   |+. ..+.|+.++-.||=+.-.
T Consensus        69 vf-~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~---i~~-~~~~g~~iIanPnC~tt~  139 (369)
T PRK06598         69 II-TCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDV---IDD-ALANGVKTFVGGNCTVSL  139 (369)
T ss_pred             EE-ECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHH---HHh-hhhcCCCEEEcCChHHHH
Confidence            77 55 455667788888899975 44433              3456554   333 323455678889866544

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.84  E-value=0.00014  Score=68.27  Aligned_cols=119  Identities=17%  Similarity=0.165  Sum_probs=79.7

Q ss_pred             CCceEEEEcCCChHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVv  110 (257)
                      .|+||+|+||||-.|+.+++++.  ..|..+|+.+.+....|+.+. +.+    ....+.+ +.++ ++      ++|++
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~~~~~~~~-~~------~vD~v   70 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRVREVDSFD-FS------QVQLA   70 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEEeeCChHH-hc------CCCEE
Confidence            46899999999999999999998  568999888876555555433 111    1222221 2222 33      69998


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeE------------EeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSV------------VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vV------------iGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      +-++.+..+.+.+..+.++|+.+|            .+-+.++.++++.+    ++  ..++=.||=+.-..
T Consensus        71 Fla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~----~~--~~iIAnPgC~~t~~  136 (336)
T PRK05671         71 FFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASL----AA--PFLVSSPSASAVAL  136 (336)
T ss_pred             EEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccc----cC--CCEEECCCcHHHHH
Confidence            866667778889999999999877            34455565543332    12  35888888665443

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.84  E-value=0.00028  Score=64.73  Aligned_cols=112  Identities=15%  Similarity=0.161  Sum_probs=70.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+++| .|+||+.+++.+.+ .+++|+ ++|+..  .....+.    ..|+..+++++++.++.   ..+|+||-+..
T Consensus         1 m~Ig~IG-lG~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~~---~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIG-LGKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSKL---EAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEc-ccHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHhC---CCCCEEEEEec
Confidence            4899999 59999999998875 578877 577541  1122222    34667788999887520   12689887776


Q ss_pred             hH-hHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          116 AS-TVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       116 p~-~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      ++ .+.+.+....   +.| .+||-++.-+++...++.+.+++.|+..+
T Consensus        69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~v  116 (299)
T PRK12490         69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYV  116 (299)
T ss_pred             CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence            55 4444443332   233 46666655555555666666666666544

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.83  E-value=0.00038  Score=65.54  Aligned_cols=91  Identities=13%  Similarity=0.049  Sum_probs=62.1

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      ..++||+|+||+|..|+.+++.+.+  +|..+|..+......|+.... .+    ..+.+.+-..+.++      ++|++
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~v~~~~~~~~~------~~D~v   73 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYTVEELTEDSFD------GVDIA   73 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeEEEeCCHHHHc------CCCEE
Confidence            4568999999999999999999987  788899887665444554432 11    12333221123343      69998


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeE
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      +-+.....+.+++..+.+.|+.||
T Consensus        74 f~a~p~~~s~~~~~~~~~~g~~VI   97 (344)
T PLN02383         74 LFSAGGSISKKFGPIAVDKGAVVV   97 (344)
T ss_pred             EECCCcHHHHHHHHHHHhCCCEEE
Confidence            844445566788888888898766

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.83  E-value=0.00041  Score=62.89  Aligned_cols=118  Identities=9%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |||+++| +|.||+.+++.+.+..   ..++. ++++.. .+....+.   ..+++.++++..++.+      ++|+||-
T Consensus         4 mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~-v~~r~~-~~~~~~l~---~~~g~~~~~~~~e~~~------~aDvVil   71 (279)
T PRK07679          4 QNISFLG-AGSIAEAIIGGLLHANVVKGEQIT-VSNRSN-ETRLQELH---QKYGVKGTHNKKELLT------DANILFL   71 (279)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEE-EECCCC-HHHHHHHH---HhcCceEeCCHHHHHh------cCCEEEE
Confidence            6999999 5999999999987653   13443 455421 11122222   1346777788888774      6899998


Q ss_pred             cCChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEc-cCchHHH
Q 025154          113 FTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSIGS  169 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~s-pNfSlGv  169 (257)
                      ...|....+.+.....   .+.-+|.-..|.+.+++++   +.. .+.||+.+ ||+..-+
T Consensus        72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~-~~~~v~r~mPn~~~~~  128 (279)
T PRK07679         72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQ-KDVPIIRAMPNTSAAI  128 (279)
T ss_pred             EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC-CCCeEEEECCCHHHHH
Confidence            8888887776655443   3443444357888766554   332 23577755 6666444

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=97.83  E-value=0.00021  Score=74.18  Aligned_cols=135  Identities=15%  Similarity=0.142  Sum_probs=89.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCCCCCeeeecCHHHHHh
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLG   99 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~-----~g~d~g~~~g~~~~~gv~v~~dl~~~l~   99 (257)
                      .+++|+|+| .|.+|+.+++.+.++.         +++++++.++..     .|-+...+.....  ......+++.+++
T Consensus       457 ~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~e  533 (810)
T PRK09466        457 KRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFD--DEAVEWDEESLFL  533 (810)
T ss_pred             ceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHH--hhcCCccHHHHHH
Confidence            468999999 5999999999986542         477899998531     1223222221000  0001122332222


Q ss_pred             ccc-cCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCC---CHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          100 SIS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       100 ~~~-~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~---s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      .+. .+...+|+||.|..+....+...|+++|++||..-=..   ..+..++|.++|+++|+.+.|-++..-|+-+
T Consensus       534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPi  609 (810)
T PRK09466        534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPI  609 (810)
T ss_pred             HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccCh
Confidence            110 00123599999977767777889999999999654332   2467889999999999999999988888766

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.81  E-value=0.00039  Score=63.75  Aligned_cols=118  Identities=12%  Similarity=0.078  Sum_probs=73.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+++| .|.||+.+++.+.+ .+++|+ ++|+..  .....+.    ..|+.++++++++.+..   ..+|+||-+..
T Consensus         1 m~Ig~IG-lG~MG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~~---~~~dvvi~~v~   68 (301)
T PRK09599          1 MQLGMIG-LGRMGGNMARRLLR-GGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAKL---PAPRVVWLMVP   68 (301)
T ss_pred             CEEEEEc-ccHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhhc---CCCCEEEEEec
Confidence            4899999 59999999998874 578765 467531  1122222    34677788998887520   13688886654


Q ss_pred             hH-hHHHHHH---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          116 AS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       116 p~-~~~~~~~---~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      +. .+.+.+.   ..++.|.-+|..+|+. ++...++.+.+++.|+..+=+|.+.
T Consensus        69 ~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~g~~~~dapvsG  122 (301)
T PRK09599         69 AGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEKGIHFVDVGTSG  122 (301)
T ss_pred             CCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHcCCEEEeCCCCc
Confidence            43 3333333   3334454344444544 4455667777777788877666654

>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type

Probab=97.80  E-value=0.00028  Score=66.02  Aligned_cols=132  Identities=17%  Similarity=0.212  Sum_probs=90.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHH--hc--------------------CCcEEEEEEe--cCCCCcchhhhhcCC--------
Q 025154           36 IKVIINGAVKEIGRAAVIAVT--KA--------------------RGMEVAGAID--SHSVGEDIGMVCDME--------   83 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~--~~--------------------~~~eLvg~vd--~~~~g~d~g~~~g~~--------   83 (257)
                      +||+|+|. |.-.+.+++-+.  .+                    .++|+|+++|  ..+.|+|+.+..-..        
T Consensus         1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~   79 (351)
T TIGR03450         1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA   79 (351)
T ss_pred             CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeee
Confidence            69999995 999999998653  11                    1679999998  357898887654221        


Q ss_pred             --CCCCeeee-----c------------------CHHHHHhccccCCCccEEEEcC---ChHhHHHHHHHHHHcCCCeEE
Q 025154           84 --QPLEIPVM-----S------------------DLTMVLGSISQSKARAVVIDFT---DASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus        84 --~~~gv~v~-----~------------------dl~~~l~~~~~~~~~DVvIDFT---~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                        .+.|+.|.     +                  |+-+.+.+    .++||+|.+=   +-+++.-++.+|++.|++.|-
T Consensus        80 ~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk~----~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN  155 (351)
T TIGR03450        80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKD----AKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVN  155 (351)
T ss_pred             ccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHHh----cCCCEEEECCccchHHHHHHHHHHHHHcCCceEe
Confidence              01233331     1                  23333433    6899999984   456777888999999999999


Q ss_pred             eCCCCCHHHHHHHHHHhhhcCceEEEccCc-h-HHHHHHHH
Q 025154          136 YVPHIQLETVSALSAFCDKASMGCLIAPTL-S-IGSILLQQ  174 (257)
Q Consensus       136 GTTG~s~e~~~~L~~~a~~~gipvl~spNf-S-lGvnll~~  174 (257)
                      +|+-+... ..++.+.++++|+|++ .--| | +|..++..
T Consensus       156 ~~P~~ia~-~p~~a~~f~e~glPi~-GDD~Ksq~GaTi~h~  194 (351)
T TIGR03450       156 ALPVFIAS-DPEWAKKFTDAGVPIV-GDDIKSQVGATITHR  194 (351)
T ss_pred             ccCccccC-CHHHHHHHHHCCCCEe-cccccccCCCchHHH
Confidence            99976553 3467777888899876 2222 3 67765433

This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.79  E-value=0.00022  Score=64.79  Aligned_cols=119  Identities=10%  Similarity=0.062  Sum_probs=75.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      |+||+|+|+ |.||+.+++.+.+...   .+++.. +++. ......+..   .. ++.++.+.++++.      ++|+|
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~-~r~~-~~~~~~l~~---~~~~~~~~~~~~e~~~------~aDvV   68 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILY-SSSK-NEHFNQLYD---KYPTVELADNEAEIFT------KCDHS   68 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEE-eCCc-HHHHHHHHH---HcCCeEEeCCHHHHHh------hCCEE
Confidence            679999995 9999999998876531   455543 3321 011111211   12 3455678777774      78999


Q ss_pred             EEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHHHH
Q 025154          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSI  170 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlGvn  170 (257)
                      |-...|..+.+.+..+   +..++.+|+-.-|++.+++++   ....  .+|+ .=||...-+.
T Consensus        69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~--~~vvR~MPN~~~~~g  127 (277)
T PRK06928         69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG--LQVSRLIPSLTSAVG  127 (277)
T ss_pred             EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC--CCEEEEeCccHHHHh
Confidence            9888888888777655   345777787777998766544   3322  2343 4488776664

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.76  E-value=0.00024  Score=63.54  Aligned_cols=113  Identities=16%  Similarity=0.184  Sum_probs=71.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |||+++| +|.||+.+++.+.+. ++    +++...++..  .....+.    ..|+.+.++..++.+      ++|+||
T Consensus         1 ~kI~~IG-~G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi   66 (266)
T PLN02688          1 FRVGFIG-AGKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVVK------SSDVII   66 (266)
T ss_pred             CeEEEEC-CcHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHHh------cCCEEE
Confidence            6899999 599999999988754 44    5553325431  1122222    357777888888874      789999


Q ss_pred             EcCChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchH
Q 025154          112 DFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSI  167 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSl  167 (257)
                      -...|+...+.+.....   .+.-+|.-+.|.+.++.+   ++...  .+++ ..||...
T Consensus        67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~--~~vvr~mP~~~~  121 (266)
T PLN02688         67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ---EWAGG--RRVVRVMPNTPC  121 (266)
T ss_pred             EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH---HHcCC--CCEEEECCCcHH
Confidence            88888877777654432   344445444677765544   33332  2566 5777644

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=97.75  E-value=0.00011  Score=69.15  Aligned_cols=97  Identities=22%  Similarity=0.211  Sum_probs=63.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchh-hh---hcC--C-CCCCeeee-
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIG-MV---CDM--E-QPLEIPVM-   91 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g-~~---~g~--~-~~~gv~v~-   91 (257)
                      .++||||+|+ ||||+.+++.+.+.++++|+++.|+..              .|+--+ ++   .|.  . ....+.++ 
T Consensus         4 ~~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~   82 (338)
T PLN02358          4 KKIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   82 (338)
T ss_pred             CceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEE
Confidence            3689999995 999999999988889999999998420              111110 11   000  0 00112222 


Q ss_pred             -cCHHHH-HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154           92 -SDLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus        92 -~dl~~~-l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                       +|++++ ..+    .++|+||+.|-.....+.+...++.|...|+
T Consensus        83 ~~~p~~~~w~~----~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi  124 (338)
T PLN02358         83 IRNPEDIPWGE----AGADFVVESTGVFTDKDKAAAHLKGGAKKVV  124 (338)
T ss_pred             cCCcccCcccc----cCCCEEEEcccchhhHHHHHHHHHCCCEEEE
Confidence             233333 111    3789999989888889999999999975554

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.74  E-value=0.00065  Score=62.73  Aligned_cols=122  Identities=16%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh----------hhcCCCCCCeeeecCHHHHHhccccCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM----------VCDMEQPLEIPVMSDLTMVLGSISQSK  105 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~----------~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (257)
                      |||+|+|+ |.||..++..+.+ .+.++. .+++..  ..+..          +.+...+.++.+++++++.+.     .
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~-~g~~V~-l~~r~~--~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~   70 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSS-KKISVN-LWGRNH--TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----D   70 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEecCH--HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----C
Confidence            58999996 9999999998764 466664 555421  10100          111111234567788888763     3


Q ss_pred             CccEEEEcCChHhHHHHHHHHHH----cCCCeEEeCCCCCHHH----HHHHHHHhhhcCceEEEccCchH
Q 025154          106 ARAVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~----~Gi~vViGTTG~s~e~----~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      .+|++|-++.+..+.+.++....    .+.++|+-+-|+..+.    .+.|.+......+.++-.|+|..
T Consensus        71 ~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~  140 (326)
T PRK14620         71 NATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAK  140 (326)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHH
Confidence            78999988877766666665443    3556788777884421    12344443332233445788754

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.74  E-value=0.0008  Score=63.94  Aligned_cols=130  Identities=16%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcC------CcEEE-EEEecCCCCcch-----------hhhhcCCCCCCeeeecCH
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKAR------GMEVA-GAIDSHSVGEDI-----------GMVCDMEQPLEIPVMSDL   94 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLv-g~vd~~~~g~d~-----------g~~~g~~~~~gv~v~~dl   94 (257)
                      ..++||+|+|+ |.||.+++..+....      +.++. +..+....+++.           ..+-+..-+.++.+++|+
T Consensus         9 ~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl   87 (365)
T PTZ00345          9 CGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDL   87 (365)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence            34689999995 999999999887553      13332 333321011111           111122123356678899


Q ss_pred             HHHHhccccCCCccEEEEcCChHhHHHHHHHHHH-----cCCCeEEeCCCCCHHHH------HHHHHHhhhcCceEEEcc
Q 025154           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETV------SALSAFCDKASMGCLIAP  163 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~-----~Gi~vViGTTG~s~e~~------~~L~~~a~~~gipvl~sp  163 (257)
                      +++++      ++|+||-...|....+.+.....     .+..+|+.+-|++.++.      +.+++.-. ..+.++..|
T Consensus        88 ~eav~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGP  160 (365)
T PTZ00345         88 KEAVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGA  160 (365)
T ss_pred             HHHHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECC
Confidence            98885      78988867777776666665543     24457777778864432      22333322 247779999


Q ss_pred             CchHHHH
Q 025154          164 TLSIGSI  170 (257)
Q Consensus       164 NfSlGvn  170 (257)
                      ||+-=|.
T Consensus       161 s~A~Eva  167 (365)
T PTZ00345        161 NVANDVA  167 (365)
T ss_pred             CHHHHHH
Confidence            9999985

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.73  E-value=0.0002  Score=59.61  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=71.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh----------hcCCCCCCeeeecCHHHHHhccccCCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV----------CDMEQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~----------~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      ||+|+|+ |.||.+++..+.. .+.++. .+.++.  +.+..+          .+..-+..+.+++|++++++      +
T Consensus         1 KI~ViGa-G~~G~AlA~~la~-~g~~V~-l~~~~~--~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~   69 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLAD-NGHEVT-LWGRDE--EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------D   69 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHH-CTEEEE-EETSCH--HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T
T ss_pred             CEEEECc-CHHHHHHHHHHHH-cCCEEE-EEeccH--HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------c
Confidence            7999996 9999999987765 455443 343320  111111          11111235678999999995      7


Q ss_pred             ccEEEEcCChHhHHHHHH---HHHHcCCCeEEeCCCCCHHH----HHHHHHHhhhcCceEEEccCchHHH
Q 025154          107 RAVVIDFTDASTVYDNVK---QATAFGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~---~a~~~Gi~vViGTTG~s~e~----~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      +|++|-.++...+.+.++   .+++.+.++|+-+-||....    .+.+++......+.++-.|||+--+
T Consensus        70 ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei  139 (157)
T PF01210_consen   70 ADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEI  139 (157)
T ss_dssp             -SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHH
T ss_pred             ccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHH
Confidence            999886665555544444   44568888888776872211    2346666655558899999998655

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.72  E-value=0.00022  Score=66.39  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +|+||+|+||+|-.|+.+++++.++|.++|+....+.  +.+.               .+.++.++      ++|+++-+
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~--~~~~---------------~~~~~~~~------~~DvvFla   57 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK--RKDA---------------AARRELLN------AADVAILC   57 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC--CCcc---------------cCchhhhc------CCCEEEEC
Confidence            4789999999999999999999999999999887543  1111               12233442      68988855


Q ss_pred             CChHhHHHHHHHHHHcCCCeE-------------EeCCCCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          114 TDASTVYDNVKQATAFGMRSV-------------VYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vV-------------iGTTG~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      .......+.+..+.+.|+.||             .|-+.++.++.+.|+    .  ..++=.||=..
T Consensus        58 lp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~----~--~~~IanPgC~~  118 (313)
T PRK11863         58 LPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA----A--AKRVANPGCYP  118 (313)
T ss_pred             CCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh----c--CCeEEcCCcHH
Confidence            666777888888888888655             334445555555553    2  24566666443

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.71  E-value=0.00023  Score=66.84  Aligned_cols=118  Identities=13%  Similarity=0.098  Sum_probs=78.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ..+||+|+||||-.|+.+++++.+  .|..+|..+......|+... +.+    ..+.+. ++++..-     .++|+++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvvf   71 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLAF   71 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEEE
Confidence            458999999999999999999988  79999998866555566554 211    144444 4444321     2689888


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEE-------------eCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVV-------------YVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vVi-------------GTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG  168 (257)
                      -++....+.+.+..+.+.|+.||=             +-+.++.+.++.+    ++  ..++=.||=+.-
T Consensus        72 ~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i----~~--~~iIAnPgC~~t  135 (336)
T PRK08040         72 FVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADY----RN--RNIIAVADSLTS  135 (336)
T ss_pred             ECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhh----cc--CCEEECCCHHHH
Confidence            445666667888988899997662             2344555544444    22  347777775443

>PRK07680 late competence protein ComER; Validated

Probab=97.69  E-value=0.0006  Score=61.54  Aligned_cols=116  Identities=11%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |||+|+|+ |.||+.+++.+.+...+  +-+.++++..  .....+..   .. ++.++.+.++++.      ++|+||-
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~---~~~g~~~~~~~~~~~~------~aDiVil   68 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKE---RYPGIHVAKTIEEVIS------QSDLIFI   68 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHH---HcCCeEEECCHHHHHH------hCCEEEE
Confidence            58999995 99999999988755322  3355666531  11222221   22 6777788888774      7899998


Q ss_pred             cCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154          113 FTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus       113 FT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG  168 (257)
                      ...|....+.+....   ..+.-+|.-+.|.+.++   |++....  -.+-+-||+.-+
T Consensus        69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~---L~~~~~~--~~~r~~p~~~~~  122 (273)
T PRK07680         69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQ---LETLVPC--QVARIIPSITNR  122 (273)
T ss_pred             ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHH---HHHHcCC--CEEEECCChHHH
Confidence            888887777666543   23444444444676544   4444333  233344666543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.66  E-value=0.00074  Score=61.38  Aligned_cols=111  Identities=16%  Similarity=0.143  Sum_probs=70.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      ||+|+| +|.||+.+++.+.. .++++. ++|+..  .....+.    ..|....++++++++      ++|+||.....
T Consensus         1 ~IgvIG-~G~mG~~iA~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIG-LGIMGSPMSINLAK-AGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD   65 (291)
T ss_pred             CEEEEE-ecHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence            699999 59999999998874 578876 566531  2222222    235556678888875      79998866543


Q ss_pred             Hh-HHHHH---HHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          117 ST-VYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       117 ~~-~~~~~---~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      .. +...+   ..++   ..|. +|+-++..++...+++.+..++.|+.++-+|
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~~~~~~p  118 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGIDYLDAP  118 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence            32 22232   1122   2333 4555555566666778888887788888766

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.64  E-value=0.00026  Score=66.49  Aligned_cols=96  Identities=17%  Similarity=0.088  Sum_probs=68.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-CCCeeee-cCHHHHHhccccCCCccEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVM-SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~-~~gv~v~-~dl~~~l~~~~~~~~~DVvI  111 (257)
                      .|+||+|+|++|-.|-.+++++..+|++|+..+..+...|+.+.++...-. -...+.. -|.+++..     .++|||+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~-----~~~DvvF   75 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIEL-----DECDVVF   75 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhc-----ccCCEEE
Confidence            489999999999999999999999999996655544446776665432100 0111221 23444422     3689999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeE
Q 025154          112 DFTDASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      -.+....+.+.+...++.|+.||
T Consensus        76 lalPhg~s~~~v~~l~~~g~~VI   98 (349)
T COG0002          76 LALPHGVSAELVPELLEAGCKVI   98 (349)
T ss_pred             EecCchhHHHHHHHHHhCCCeEE
Confidence            88888899999999999999855

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.63  E-value=0.00086  Score=61.52  Aligned_cols=115  Identities=13%  Similarity=0.099  Sum_probs=66.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+++| .|+||..+++.+.+ .++++.. +|+..  .....+.    ..++....+++++.+.+   ..+|+||-...
T Consensus         1 M~Ig~IG-lG~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~~---~~~dvIi~~vp   68 (298)
T TIGR00872         1 MQLGLIG-LGRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQRL---SAPRVVWVMVP   68 (298)
T ss_pred             CEEEEEc-chHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhhc---CCCCEEEEEcC
Confidence            5899999 59999999998874 5788764 77531  1122222    22444456776655321   25899887766


Q ss_pred             hHhHHHHHHH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          116 ASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       116 p~~~~~~~~~---a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      +..+.+.+..   .++.|.-+|-.+|+...+ ..++.+.+++.|+..+=+|
T Consensus        69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~-t~~~~~~~~~~g~~~vda~  118 (298)
T TIGR00872        69 HGIVDAVLEELAPTLEKGDIVIDGGNSYYKD-SLRRYKLLKEKGIHLLDCG  118 (298)
T ss_pred             chHHHHHHHHHHhhCCCCCEEEECCCCCccc-HHHHHHHHHhcCCeEEecC
Confidence            5544444433   345565555555554333 3344444455566655433

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.60  E-value=0.00057  Score=64.18  Aligned_cols=86  Identities=14%  Similarity=0.133  Sum_probs=59.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ||+|+||+|..|+.+++++.+  .|..+|+.+......|+... +.+    ..+.+.+ +. +.+.      ++|+++..
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~~~~~~~-~~~~------~~D~v~~a   68 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELEVNEAKI-ESFE------GIDIALFS   68 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEEEEeCCh-HHhc------CCCEEEEC
Confidence            699999999999999999887  57777776554444454432 111    1222222 22 2333      79999977


Q ss_pred             CChHhHHHHHHHHHHcCCCeE
Q 025154          114 TDASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      +....+.+.+..+++.|+.||
T Consensus        69 ~g~~~s~~~a~~~~~~G~~VI   89 (339)
T TIGR01296        69 AGGSVSKEFAPKAAKCGAIVI   89 (339)
T ss_pred             CCHHHHHHHHHHHHHCCCEEE
Confidence            777888899999999998655

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.59  E-value=0.0008  Score=60.53  Aligned_cols=109  Identities=7%  Similarity=0.054  Sum_probs=68.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~---eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |||+++|+ |.||..+++.+.+....   ++. +++++.            ...++....+..++++      ++|+||-
T Consensus         4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~------------~~~~~~~~~~~~~~~~------~~D~Vil   63 (260)
T PTZ00431          4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIY-YHTPSK------------KNTPFVYLQSNEELAK------TCDIIVL   63 (260)
T ss_pred             CEEEEECc-cHHHHHHHHHHHhCCCCCcceEE-EECCCh------------hcCCeEEeCChHHHHH------hCCEEEE
Confidence            69999995 99999999998865322   233 334321            0123334556667764      6899998


Q ss_pred             cCChHhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~--~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      +..|....+.+.....  .+..+|+-..|.+.++.+.+... ..  ..+-+-||...
T Consensus        64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~-~~--~vvr~mPn~p~  117 (260)
T PTZ00431         64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGV-EA--KIVRVMPNTPS  117 (260)
T ss_pred             EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCC-CC--eEEEECCCchh
Confidence            9888888877766543  24567777779987665554321 11  12345666654

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.58  E-value=0.0014  Score=60.22  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+++| .|+||+.+++.+.+ .++++. ++++..   ....+.    ..|+...++..++.+      .+|+||-...
T Consensus         1 m~Ig~IG-lG~MG~~ma~~L~~-~G~~v~-v~~~~~---~~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIG-LGIMGTPMAINLAR-AGHQLH-VTTIGP---VADELL----SLGAVSVETARQVTE------ASDIIFIMVP   64 (292)
T ss_pred             CeEEEEc-cCHHHHHHHHHHHH-CCCeEE-EEeCCH---hHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            4899999 59999999998874 567765 555431   122232    245666778888774      7898886543


Q ss_pred             h-HhHHHHHHH---H---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154          116 A-STVYDNVKQ---A---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       116 p-~~~~~~~~~---a---~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      . +.+.+.+..   .   +..| .+|+-++..++++.+++.+.+++.|+..+=+| +|=|..
T Consensus        65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP-VsGg~~  124 (292)
T PRK15059         65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP-VSGGEI  124 (292)
T ss_pred             ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec-CCCCHH
Confidence            3 333443311   1   1223 36666777778888888888888888877666 444443

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.56  E-value=0.00018  Score=67.73  Aligned_cols=126  Identities=13%  Similarity=0.167  Sum_probs=74.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcC-------CcEEE-EEEecCCCCcc-----------hhhhhcCCCCCCeeeecCHHHH
Q 025154           37 KVIINGAVKEIGRAAVIAVTKAR-------GMEVA-GAIDSHSVGED-----------IGMVCDMEQPLEIPVMSDLTMV   97 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~-------~~eLv-g~vd~~~~g~d-----------~g~~~g~~~~~gv~v~~dl~~~   97 (257)
                      ||+|+|+ |.+|.+++..+....       +.++. +..+....+..           ...+.+..-+.++.+++|++++
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            6999995 999999999887532       03332 22210000111           1111122112346678999999


Q ss_pred             HhccccCCCccEEEEcCChHhHHHHHHH---HHHcCCCeEEeCCCCCHH--HHHH----HHHHhhhcCceEEEccCchHH
Q 025154           98 LGSISQSKARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLE--TVSA----LSAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT~p~~~~~~~~~---a~~~Gi~vViGTTG~s~e--~~~~----L~~~a~~~gipvl~spNfSlG  168 (257)
                      ++      ++|++|-..++....+.+..   .++.+.++|+.|=|+..+  ....    +++.- ...+.++..|||+.-
T Consensus        80 l~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~E  152 (342)
T TIGR03376        80 AK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANE  152 (342)
T ss_pred             Hh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHH
Confidence            85      78988855555555444444   345577888877798765  3222    33322 234777999999988


Q ss_pred             HH
Q 025154          169 SI  170 (257)
Q Consensus       169 vn  170 (257)
                      |.
T Consensus       153 va  154 (342)
T TIGR03376       153 VA  154 (342)
T ss_pred             HH
Confidence            85

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.53  E-value=0.0014  Score=60.06  Aligned_cols=116  Identities=11%  Similarity=0.117  Sum_probs=74.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |.||+++| .|.||..+++.+.+ .++++. ++|+..  .....+.    ..++....++.++++      .+|+||-..
T Consensus         1 m~~Ig~IG-lG~mG~~mA~~l~~-~G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIG-LGQMGSPMASNLLK-QGHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML   65 (296)
T ss_pred             CCeEEEEe-eCHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence            45899999 59999999998874 467764 566531  1222332    235556778888774      789988766


Q ss_pred             ChHhHHHHHHH-------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          115 DASTVYDNVKQ-------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       115 ~p~~~~~~~~~-------a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      .++...+.+..       ++..|. +|+-++..+++..+++.+..++.|+..+=+|-+.
T Consensus        66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g  123 (296)
T PRK15461         66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR  123 (296)
T ss_pred             CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence            55543332211       123343 4445555567777888888888788877666654

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.52  E-value=0.00034  Score=60.68  Aligned_cols=92  Identities=24%  Similarity=0.363  Sum_probs=68.5

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHH-hcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCC
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKA  106 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~--~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~  106 (257)
                      .+.|.+|+|+|+ |.+|++++..-- .+.++++++++|..  ..|..+         .+++|+  ++++..+.+    .+
T Consensus        81 ~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~---------~~v~V~~~d~le~~v~~----~d  146 (211)
T COG2344          81 QDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI---------GDVPVYDLDDLEKFVKK----ND  146 (211)
T ss_pred             CCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc---------CCeeeechHHHHHHHHh----cC
Confidence            356889999996 999999998753 47899999999953  333322         346665  578887764    57


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      +|+.|-..+.+.+-+.+....++|+.-+.--
T Consensus       147 v~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNF  177 (211)
T COG2344         147 VEIAILTVPAEHAQEVADRLVKAGVKGILNF  177 (211)
T ss_pred             ccEEEEEccHHHHHHHHHHHHHcCCceEEec
Confidence            8888866666666778889999998766543

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.48  E-value=0.0018  Score=60.66  Aligned_cols=127  Identities=17%  Similarity=0.191  Sum_probs=80.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcE-EEEEEecC-----CCC-cchhhhhcCCCCCCeeeecCHHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSH-----SVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~-----~~g-~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (257)
                      |+||+|+|+ |..|.++++.+.+. +.+ ..++.+..     ... +....+-+..-+.++..++|++++++      .+
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~n-g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARN-GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhc-CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence            579999996 99999999988755 333 33444311     000 11111112223456777999999995      69


Q ss_pred             cEEEEcCChHhH-HHHHH---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhh----cCceEEEccCchHHHH
Q 025154          108 AVVIDFTDASTV-YDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCLIAPTLSIGSI  170 (257)
Q Consensus       108 DVvIDFT~p~~~-~~~~~---~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~----~gipvl~spNfSlGvn  170 (257)
                      |+++ |..|... .+.++   ..+..+.++|+.|=|+..+..+.+.+..++    ..+.++-.|||+-=|.
T Consensus        73 d~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa  142 (329)
T COG0240          73 DIIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVA  142 (329)
T ss_pred             CEEE-EECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHh
Confidence            9888 5444443 34443   345788999998888876554444444432    2378889999998875

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.48  E-value=0.00063  Score=61.28  Aligned_cols=95  Identities=21%  Similarity=0.337  Sum_probs=60.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--------CCC----cchhhhhc-CCCCCCe----ee-------e
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------SVG----EDIGMVCD-MEQPLEI----PV-------M   91 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------~~g----~d~g~~~g-~~~~~gv----~v-------~   91 (257)
                      |+|+++| .||||..+++.+. +.+.++|+ +|.+        ..|    ....++.. +..+.-|    |.       .
T Consensus         1 M~iGmiG-LGrMG~n~v~rl~-~~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi   77 (300)
T COG1023           1 MQIGMIG-LGRMGANLVRRLL-DGGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI   77 (300)
T ss_pred             Ccceeec-cchhhHHHHHHHH-hCCCeEEE-EcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence            6899999 7999999999887 57888886 5521        001    01112211 0001111    11       1


Q ss_pred             cCHHHHHhccccCCCccEEEEc--CChHhHHHHHHHHHHcCCCeE-EeCCC
Q 025154           92 SDLTMVLGSISQSKARAVVIDF--TDASTVYDNVKQATAFGMRSV-VYVPH  139 (257)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDF--T~p~~~~~~~~~a~~~Gi~vV-iGTTG  139 (257)
                      +++...+      ..-|+|||-  |+-.......+.+.++|++.+ +||+|
T Consensus        78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG  122 (300)
T COG1023          78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG  122 (300)
T ss_pred             HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence            2333333      357999997  566777788888999999999 88875

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=97.47  E-value=0.0009  Score=63.93  Aligned_cols=97  Identities=15%  Similarity=0.134  Sum_probs=62.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCC---cc----------------hhhhhcCCCCCCeeee---
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---ED----------------IGMVCDMEQPLEIPVM---   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g---~d----------------~g~~~g~~~~~gv~v~---   91 (257)
                      |.||+|.|+||.+|+..++.+.+.| .+++++........   +-                ..++...-...++.++   
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            5699999999999999999888765 69999987311100   00                0000000000122232   


Q ss_pred             cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      +.+.++++    ..++|+|+-...-.+.......|+++|++|.+
T Consensus        81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL  120 (385)
T PRK05447         81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL  120 (385)
T ss_pred             hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence            23444444    25689999887766667778899999999988

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.45  E-value=0.0034  Score=58.76  Aligned_cols=129  Identities=11%  Similarity=0.081  Sum_probs=73.2

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhh-cCCCCCCeeeecCHHHHHhccccCC
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSK  105 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~g~~~-g~~~~~gv~v~~dl~~~l~~~~~~~  105 (257)
                      ..||||+|+|+ |.||..++..+.+.. .......++..      .+.....+- +...+..+.+++|++++++      
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~------   76 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN------   76 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh------
Confidence            45789999995 999999999887553 32222222110      010000000 1100123556788888774      


Q ss_pred             CccEEEEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCHHH----HHHHHHHhhhcCceEEEccCchHHH
Q 025154          106 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~e~----~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      .+|+||-++.+..+.+.++..   +..+.++|+-+-|+..+.    .+.|++......+.++..|||.-=+
T Consensus        77 ~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev  147 (341)
T PRK12439         77 CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREV  147 (341)
T ss_pred             cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHH
Confidence            789988777666655555444   344556776666886421    1234443222235678899998854

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.44  E-value=0.0024  Score=59.88  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=80.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~-~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |+||||+||||-.|+.+++.+.+ ++.++.+.++.+ +..|+...++.+-  .  +.+-++..+..+.    .++|+++ 
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~--~--~~v~~~~~~~~~~----~~~Divf-   71 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK--S--IGVPEDAADEFVF----SDVDIVF-   71 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc--c--ccCcccccccccc----ccCCEEE-
Confidence            58999999999999999999988 788887766664 3556664444321  1  2333322222221    3688766 


Q ss_pred             cCCh-HhHHHHHHHHHHcCCCeEEeCCCC-------------CHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154          113 FTDA-STVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       113 FT~p-~~~~~~~~~a~~~Gi~vViGTTG~-------------s~e~~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      |+.+ +...++...+.+.|+.||--+.-|             +++.   |.+.-++ | -++-.||=|.-..
T Consensus        72 ~~ag~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~---l~~~~~r-g-~IianpNCst~~l  138 (334)
T COG0136          72 FAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEH---LIDYQKR-G-FIIANPNCSTIQL  138 (334)
T ss_pred             EeCchHHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHH---HHhhhhC-C-CEEECCChHHHHH
Confidence            6664 666889999999997777655543             4444   4443333 3 5888999886553

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.43  E-value=0.0011  Score=62.69  Aligned_cols=114  Identities=18%  Similarity=0.220  Sum_probs=72.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvI  111 (257)
                      +||+|+||+|-.|+.+++++.++|+++   |..+......|+... +.+    ..+.+.+ +.++ +.      +.|+++
T Consensus         6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~-~~------~~Divf   73 (347)
T PRK06728          6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINS-FE------GVDIAF   73 (347)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHH-hc------CCCEEE
Confidence            799999999999999999988889999   554444444455442 211    1344432 3333 33      689887


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEe-------------CCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVY-------------VPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViG-------------TTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      -....+.+.+.+..+.+.|+.||==             -+.++.++   |+.   +  -.++-.||=+.-.
T Consensus        74 ~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~---i~~---~--~~iIanPnC~tt~  136 (347)
T PRK06728         74 FSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHT---LKE---H--KGIIAVPNCSALQ  136 (347)
T ss_pred             ECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHH---Hhc---c--CCEEECCCCHHHH
Confidence            3345566678888888999876632             23445543   332   1  1478888866544

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.41  E-value=0.0014  Score=60.26  Aligned_cols=106  Identities=20%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .|||+|+| +|.||+.+++.+. ..++++. ++++..                   ..+++++++      ++|+||-+.
T Consensus         4 ~m~I~iiG-~G~~G~~lA~~l~-~~G~~V~-~~~r~~-------------------~~~~~~~~~------~advvi~~v   55 (308)
T PRK14619          4 PKTIAILG-AGAWGSTLAGLAS-ANGHRVR-VWSRRS-------------------GLSLAAVLA------DADVIVSAV   55 (308)
T ss_pred             CCEEEEEC-ccHHHHHHHHHHH-HCCCEEE-EEeCCC-------------------CCCHHHHHh------cCCEEEEEC
Confidence            47999999 5999999999886 4577765 555431                   135567664      789988555


Q ss_pred             ChHhHHHHHHHHH----HcCCCeEEeCCCCCHHHHHHH----HHHhhhcCceEEEccCchHH
Q 025154          115 DASTVYDNVKQAT----AFGMRSVVYVPHIQLETVSAL----SAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus       115 ~p~~~~~~~~~a~----~~Gi~vViGTTG~s~e~~~~L----~~~a~~~gipvl~spNfSlG  168 (257)
                      ....+.+.+....    ..++-+|..|+|++++....+    .+......+-++..|+++--
T Consensus        56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~e  117 (308)
T PRK14619         56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKE  117 (308)
T ss_pred             ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHH
Confidence            4444444444432    235556666777765433322    22222322333477887643

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.40  E-value=0.0012  Score=60.25  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=79.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |+||+++|+ |+||++++.-+.+...+  +-+-+.++..  .....+.   ..+|+.+++|.+++.+      ..|||+-
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~--e~~~~l~---~~~g~~~~~~~~~~~~------~advv~L   68 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSE--EKRAALA---AEYGVVTTTDNQEAVE------EADVVFL   68 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCH--HHHHHHH---HHcCCcccCcHHHHHh------hCCEEEE
Confidence            679999995 99999999998876522  2333444421  1111232   2566666677777774      7999999


Q ss_pred             cCChHhHHHHHHHHH--HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHHHH
Q 025154          113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSI  170 (257)
Q Consensus       113 FT~p~~~~~~~~~a~--~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlGvn  170 (257)
                      .-.|....+.+..+.  ..++.+|+=.-|.+-++   |+++.-.  .+++ .=||..-=|.
T Consensus        69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~---l~~~l~~--~~vvR~MPNt~a~vg  124 (266)
T COG0345          69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIET---LERLLGG--LRVVRVMPNTPALVG  124 (266)
T ss_pred             EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHH---HHHHcCC--CceEEeCCChHHHHc
Confidence            999999888888775  36777887778998765   4444432  4555 4477765443

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=97.40  E-value=0.0016  Score=60.64  Aligned_cols=76  Identities=14%  Similarity=0.122  Sum_probs=57.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      -||+|+|++|-+|..+++++..+|+++|+.+......           +      ..+.+++++      ++|+++-.+.
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~-----------~------~~~~~~~~~------~~D~vFlalp   58 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK-----------D------AAERAKLLN------AADVAILCLP   58 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc-----------C------cCCHhHhhc------CCCEEEECCC
Confidence            4899999999999999999999999999998754310           0      013344543      6898885556


Q ss_pred             hHhHHHHHHHHHHcCCCeE
Q 025154          116 ASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vV  134 (257)
                      .+.+.+.+..+.+.|+.||
T Consensus        59 ~~~s~~~~~~~~~~g~~VI   77 (310)
T TIGR01851        59 DDAAREAVSLVDNPNTCII   77 (310)
T ss_pred             HHHHHHHHHHHHhCCCEEE
Confidence            6677888888888888655

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.35  E-value=0.00095  Score=59.34  Aligned_cols=118  Identities=18%  Similarity=0.220  Sum_probs=76.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-ee-----eecCHHHHHhccc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS  102 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~g-v~-----v~~dl~~~l~~~~  102 (257)
                      ..+||+|.| +|.+|+.+++.+. ..+.+++++.|+.     ..|-|..++.....+.+ +.     .+-+.++++.   
T Consensus        30 ~~~~v~I~G-~G~VG~~~a~~L~-~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~---  104 (227)
T cd01076          30 AGARVAIQG-FGNVGSHAARFLH-EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE---  104 (227)
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence            358999999 5999999999876 4699999999952     33556655542211111 11     1113455565   


Q ss_pred             cCCCccEEEEcCChHhHH-HHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          103 QSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       103 ~~~~~DVvIDFT~p~~~~-~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                        .++||+|.++.+.... +++.   +....+|+|-.  .++++..+.|    ++  -.|+|.|-|..
T Consensus       105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~--rGi~~~PD~~a  161 (227)
T cd01076         105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HE--RGVLVVPDILA  161 (227)
T ss_pred             --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HH--CCCEEEChHHh
Confidence              4899999999666553 3333   44699999876  4565444444    33  26777788865

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=97.35  E-value=0.00065  Score=63.60  Aligned_cols=96  Identities=22%  Similarity=0.241  Sum_probs=61.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccchhhhh--c----CCCCCCeeee--c
Q 025154           37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GEDIGMVC--D----MEQPLEIPVM--S   92 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~-------------g~d~g~~~--g----~~~~~gv~v~--~   92 (257)
                      ||||+|+ ||+||.+.+++.+.   ++++++++.|....             |+--+++.  +    .. ...+.++  .
T Consensus         1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~i~v~~~~   78 (325)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN-GDCIRVLHSP   78 (325)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC-CeEEEEEEcC
Confidence            6999997 99999999998864   46999998873210             11000000  0    00 0123333  3


Q ss_pred             CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      +++++-=   .+.++|+|++.|.+..+.+.+..+++.|..+|+-+
T Consensus        79 ~p~~~~w---~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~S  120 (325)
T TIGR01532        79 TPEALPW---RALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFS  120 (325)
T ss_pred             Chhhccc---cccCCCEEEEccchhccHHHHHHHHHcCCeEEEec
Confidence            5555321   01479999999999999999999999995555433

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PLN02712 arogenate dehydrogenase

Probab=97.35  E-value=0.0036  Score=63.92  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=75.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .++||+|+| .|+||+.+++.+.+ .+.+++ ++|+..   +....    ...|+..+.++++++.     ..+|+||-.
T Consensus       368 ~~~kIgIIG-lG~mG~slA~~L~~-~G~~V~-~~dr~~---~~~~a----~~~Gv~~~~~~~el~~-----~~aDvVILa  432 (667)
T PLN02712        368 SKLKIAIVG-FGNFGQFLAKTMVK-QGHTVL-AYSRSD---YSDEA----QKLGVSYFSDADDLCE-----EHPEVILLC  432 (667)
T ss_pred             CCCEEEEEe-cCHHHHHHHHHHHH-CcCEEE-EEECCh---HHHHH----HHcCCeEeCCHHHHHh-----cCCCEEEEC
Confidence            458999999 59999999998875 567877 566532   11111    1345666788888774     258999988


Q ss_pred             CChHhHHHHHHHHHH--c-CCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHH
Q 025154          114 TDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG  168 (257)
Q Consensus       114 T~p~~~~~~~~~a~~--~-Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlG  168 (257)
                      +.|....+.+.....  . .-.+|+-++.-...-.+.+++.... +..++ .-|||..-
T Consensus       433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~-~~~~v~~HPm~G~e  490 (667)
T PLN02712        433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ-DFDILCTHPMFGPE  490 (667)
T ss_pred             CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC-CCceEeeCCCCCcc
Confidence            887777777765443  1 1246665544333334555554433 45566 66776644

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.32  E-value=0.00026  Score=57.68  Aligned_cols=105  Identities=19%  Similarity=0.178  Sum_probs=56.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ..+||+|+|+ ||+|+.+.+++. ..+++++++..+...  .......   ..+-..+.+++++++      ++|+++ .
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~-~ag~~v~~v~srs~~--sa~~a~~---~~~~~~~~~~~~~~~------~aDlv~-i   74 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALA-RAGHEVVGVYSRSPA--SAERAAA---FIGAGAILDLEEILR------DADLVF-I   74 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHH-HTTSEEEEESSCHH---HHHHHHC-----TT-----TTGGGC------C-SEEE-E
T ss_pred             CccEEEEECC-CHHHHHHHHHHH-HCCCeEEEEEeCCcc--ccccccc---ccccccccccccccc------cCCEEE-E
Confidence            4689999996 999999999876 568999988764311  1111111   112222345667764      799887 6


Q ss_pred             CChHhHHHHHHHHHHcC-----CCeEEeCCCCCHHHHHHHHHHhhh
Q 025154          114 TDASTVYDNVKQATAFG-----MRSVVYVPHIQLETVSALSAFCDK  154 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~G-----i~vViGTTG~s~e~~~~L~~~a~~  154 (257)
                      |.|+...+-+...+...     =.+|+=|.|-..  .+-|+-+.++
T Consensus        75 avpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~--~~vL~p~~~~  118 (127)
T PF10727_consen   75 AVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG--SDVLAPARER  118 (127)
T ss_dssp             -S-CCHHHHHHHHHHCC--S-TT-EEEES-SS----GGGGHHHHHT
T ss_pred             EechHHHHHHHHHHHHhccCCCCcEEEECCCCCh--HHhhhhHHHC
Confidence            66777766555544432     357877887543  2345554444

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.31  E-value=0.00075  Score=63.34  Aligned_cols=99  Identities=25%  Similarity=0.225  Sum_probs=63.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCC-----CCCCeeee--cCH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDME-----QPLEIPVM--SDL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~~~g~~-----~~~gv~v~--~dl   94 (257)
                      ++||||.| .||+||.+.|++.+++++++|++=|..             -.|+--+++.-.+     ....+.++  .++
T Consensus         2 ~~~i~inG-fGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp   80 (331)
T PRK15425          2 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   80 (331)
T ss_pred             ceEEEEEe-eChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCCh
Confidence            37999999 599999999998878899999987621             0111111110000     01123333  255


Q ss_pred             HHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      +++-=   ++.++|+||+.|-.....+.+...++.|...|+=+
T Consensus        81 ~~~~w---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (331)
T PRK15425         81 ANLKW---DEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT  120 (331)
T ss_pred             hhCcc---cccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence            55321   01379999988888888888999999997777544

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.28  E-value=0.0032  Score=57.36  Aligned_cols=113  Identities=16%  Similarity=0.172  Sum_probs=73.8

Q ss_pred             EEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh-Hh
Q 025154           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA-ST  118 (257)
Q Consensus        40 V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p-~~  118 (257)
                      ++| .|.||..+++.+.+ .++++. ++|+..  .....+.    ..|+...+++.++++      ++|+||-.-.+ ..
T Consensus         1 ~IG-lG~mG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIG-LGNMGGPMAANLLK-AGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH   65 (288)
T ss_pred             CCc-ccHhHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence            468 59999999998874 567754 466531  1222232    346667788888885      78998866654 33


Q ss_pred             HHHHH---HH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          119 VYDNV---KQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       119 ~~~~~---~~---a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      +.+.+   ..   .+..| .+|+-+++.+++..+++.+.+++.|+..+-+| .|=|.
T Consensus        66 ~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP-v~Gg~  120 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP-VSGGV  120 (288)
T ss_pred             HHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC-CCCCH
Confidence            34333   12   22334 35666777888888899888888888877766 44444

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.28  E-value=0.003  Score=57.42  Aligned_cols=118  Identities=9%  Similarity=0.079  Sum_probs=73.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      +||+++|+ |.||+.+++.+.+..   ..++ -++|+..  .....+.   ++.|+.++++.++++.      ++|+||-
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I-~v~~r~~--~~~~~l~---~~~g~~~~~~~~e~~~------~aDiIiL   69 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQI-ICSDLNV--SNLKNAS---DKYGITITTNNNEVAN------SADILIL   69 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceE-EEECCCH--HHHHHHH---HhcCcEEeCCcHHHHh------hCCEEEE
Confidence            58999995 999999999987542   1234 3455431  1122222   1246667778888774      7899998


Q ss_pred             cCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceE-EEccCchHHHH
Q 025154          113 FTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGC-LIAPTLSIGSI  170 (257)
Q Consensus       113 FT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipv-l~spNfSlGvn  170 (257)
                      ...|....+.+....   +.+.-+|.=..|.+-++++   ++.... .+| -.-||...-+.
T Consensus        70 avkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~---~~l~~~-~~vvR~MPN~~~~vg  127 (272)
T PRK12491         70 SIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTE---NEFDRK-LKVIRVMPNTPVLVG  127 (272)
T ss_pred             EeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHH---HhcCCC-CcEEEECCChHHHHc
Confidence            888888877766543   2344445555699876644   443211 233 35588776553

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.25  E-value=0.001  Score=62.58  Aligned_cols=99  Identities=20%  Similarity=0.185  Sum_probs=64.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhhhcCC-----CCCCeeee--cC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMVCDME-----QPLEIPVM--SD   93 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g~~~g~~-----~~~gv~v~--~d   93 (257)
                      ++||||.| .||+||.+.+++.+.+++++|++-|+.              --|+--+++.-.+     ....+.++  .|
T Consensus         2 ~~ki~ING-fGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~d   80 (337)
T PTZ00023          2 VVKLGING-FGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKD   80 (337)
T ss_pred             ceEEEEEC-cChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCC
Confidence            47999999 599999999998877899999986621              0111101110000     01123333  45


Q ss_pred             HHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      ++++-=   ++.++|+|++.|-.....+.+..+++.|...|+=+
T Consensus        81 p~~lpW---~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS  121 (337)
T PTZ00023         81 PAAIPW---GKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS  121 (337)
T ss_pred             hhhCCc---cccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence            555421   11479999988888888889999999997777644

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=97.24  E-value=0.00083  Score=63.18  Aligned_cols=99  Identities=22%  Similarity=0.224  Sum_probs=63.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee-
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM-   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~d~g~~------~g~~~~~gv~v~-   91 (257)
                      |+||||+|+ ||+||.+.+.+.+.   ++++|+++=|..             ..|+--+++      +-.. ...+.++ 
T Consensus         1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~-g~~i~v~~   78 (336)
T PRK13535          1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVG-DDAIRLLH   78 (336)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEE
Confidence            689999997 99999999998763   579999776410             001100000      0000 1123343 


Q ss_pred             -cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                       .+++++-=   .+.++|+|++.|-.....+.+..+++.|...|+=+.
T Consensus        79 ~~~p~~~~w---~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSa  123 (336)
T PRK13535         79 ERDIASLPW---RELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSH  123 (336)
T ss_pred             cCCcccCcc---cccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecC
Confidence             25554321   013799999999899999999999999977776443

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=97.21  E-value=0.00081  Score=63.23  Aligned_cols=99  Identities=18%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhcCC-----CCCCeeeec--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCDME-----QPLEIPVMS--   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~~~g~~-----~~~gv~v~~--   92 (257)
                      |+||||.| .||+||.+.+++.+.  +++++|++-|..             -.|+--+++.-.+     ....+.++.  
T Consensus         1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~   79 (337)
T PRK07403          1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR   79 (337)
T ss_pred             CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence            78999999 599999999987766  589999987621             0111101110000     011233332  


Q ss_pred             CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      |++++-=   ++.++|+|++.|-.....+.+...++.|...|+=+
T Consensus        80 dp~~~~W---~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS  121 (337)
T PRK07403         80 NPLNLPW---KEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT  121 (337)
T ss_pred             CcccCCh---hhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence            3344310   01379999998988888888999999997776543

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=97.19  E-value=0.0012  Score=62.19  Aligned_cols=99  Identities=22%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCC-----CCCCeeee--cCH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDME-----QPLEIPVM--SDL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~~~g~~-----~~~gv~v~--~dl   94 (257)
                      ++||||.| .||+||.+.+++.+.+++++|++=|..             -.|+--+++.-.+     ....+.++  .|+
T Consensus         2 ~~ki~ING-fGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp   80 (343)
T PRK07729          2 KTKVAING-FGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDP   80 (343)
T ss_pred             ceEEEEEC-cChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCh
Confidence            47999999 599999999998877899999986621             0111111110000     01123333  355


Q ss_pred             HHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      +++-=   .+.++|+|++.|-.....+.+..+++.|...|+=+
T Consensus        81 ~~~~W---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (343)
T PRK07729         81 KELPW---TDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT  120 (343)
T ss_pred             hhCcc---cccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence            55421   01379999999988888999999999997777644

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.19  E-value=0.0022  Score=55.85  Aligned_cols=160  Identities=14%  Similarity=0.190  Sum_probs=90.7

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecCHHHHHhccccCCCccEEEEc
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |+|+|++|+.|+.+++.+.+ +++++.+.+.... ......+.    ..|+.+    ++|.+.+.+.+   .++|+|+-.
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al---~g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL---KGVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH---TTCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH---cCCceEEee
Confidence            78999999999999999987 8899988875421 11122221    123322    33444432211   489998877


Q ss_pred             CC------hHhHHHHHHHHHHcCCCeEEeCC-C--C------C-H----HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154          114 TD------ASTVYDNVKQATAFGMRSVVYVP-H--I------Q-L----ETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (257)
Q Consensus       114 T~------p~~~~~~~~~a~~~Gi~vViGTT-G--~------s-~----e~~~~L~~~a~~~gipvl~spNfSlGvnll~  173 (257)
                      +.      .+.....+.+|.+.|+..++=++ +  .      . .    ++...++++.++.+++..+   +..|. .++
T Consensus        72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~---i~~g~-f~e  147 (233)
T PF05368_consen   72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTI---IRPGF-FME  147 (233)
T ss_dssp             SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEE---EEE-E-EHH
T ss_pred             cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhcccccee---ccccc-hhh
Confidence            65      34556788999999999887432 1  1      1 1    2234688999998888776   44454 233


Q ss_pred             HHHHHhcC---CCCCeEEEeccCCCCCCCCCc-cHHHHHHh
Q 025154          174 QAAISASF---HYKNVEIVESRPNARVRYMTR-TLISMQVC  210 (257)
Q Consensus       174 ~~a~~l~~---~~~DiEIiE~HH~~K~DapSG-Ta~~l~~~  210 (257)
                      .+...+..   ...+-..+..+...+.+.+.. +...++.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~  188 (233)
T PF05368_consen  148 NLLPPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRA  188 (233)
T ss_dssp             HHHTTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHH
T ss_pred             hhhhhhcccccccccceEEEEccCCCccccccccHHHHHHH
Confidence            33221111   111111344555555444444 66666544

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>COG1810 Uncharacterized protein conserved in archaea [Function unknown]

Probab=97.19  E-value=0.0067  Score=53.66  Aligned_cols=155  Identities=10%  Similarity=0.098  Sum_probs=100.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ||||+|+. .|.-|.+.++.+... -...++++.+.+.   ...           ...+.+++.|..+   ..+|++|-+
T Consensus         1 ~mki~vlt-~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~~~-----------~fie~P~~~Lp~~---~e~Di~va~   62 (224)
T COG1810           1 MMKILVLT-DGEYGKRAVNNLACKGFKNQFVAVKEYPE---ELP-----------DFIEEPEDLLPKL---PEADIVVAY   62 (224)
T ss_pred             CcEEEEEe-eccchHHHHHhHhhhccccceEEEEeccc---ccc-----------chhhCHHHhcCCC---CCCCEEEEe
Confidence            79999999 699999999998743 2356777776431   011           1234556666532   478999999


Q ss_pred             C-ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchH----HHHHHHHHHHHhcCCCCCeEE
Q 025154          114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI----GSILLQQAAISASFHYKNVEI  188 (257)
Q Consensus       114 T-~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSl----Gvnll~~~a~~l~~~~~DiEI  188 (257)
                      + +|+..++..+.+.+.|...||--.+-..--.++|++.+.+.|+-+.+--+|--    |---+..|+..+.+....+|+
T Consensus        63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~vevev  142 (224)
T COG1810          63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNENPHIDEFAERFGKPEVEVEV  142 (224)
T ss_pred             ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCCCChHHHHHHHHcCCceEEEEe
Confidence            7 89999999999888887666533322234467799999987766654444421    111377888777654333333


Q ss_pred             E-----eccCCCCCCCCCccHHHHHH
Q 025154          189 V-----ESRPNARVRYMTRTLISMQV  209 (257)
Q Consensus       189 i-----E~HH~~K~DapSGTa~~l~~  209 (257)
                      -     ..  .=+..||=|.+--+|.
T Consensus       143 ~~~~i~~V--~V~RsaPCGsT~~vAk  166 (224)
T COG1810         143 ENGKIKDV--DVLRSAPCGSTWYVAK  166 (224)
T ss_pred             cCCeEEEE--EEEecCCCchHHHHHH
Confidence            1     12  2345589888776664

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.18  E-value=0.0026  Score=62.37  Aligned_cols=115  Identities=12%  Similarity=0.129  Sum_probs=68.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |.+|+|+| .|.||+.+++.+. +.+++|. ++|+..  ....++.......|  +..+++++++++.+   .++|+||-
T Consensus         1 ~~~IgvIG-LG~MG~~lA~nL~-~~G~~V~-v~dr~~--~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIG-LAVMGQNLALNIA-SRGFKIS-VYNRTY--EKTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL   72 (470)
T ss_pred             CCEEEEEe-EhHHHHHHHHHHH-HCCCeEE-EEeCCH--HHHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence            56899999 5999999999887 4577755 577531  11122221100113  44578899888521   25897776


Q ss_pred             c-CChHhHHHHH---HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCce
Q 025154          113 F-TDASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (257)
Q Consensus       113 F-T~p~~~~~~~---~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gip  158 (257)
                      + +.++.+.+.+   ...++.|.-+|-++|++..+..+..+++ ++.|+.
T Consensus        73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l-~~~Gi~  121 (470)
T PTZ00142         73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRC-EEKGIL  121 (470)
T ss_pred             EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCe
Confidence            6 4444444443   3445667777777887755554444444 444554

>PLN02256 arogenate dehydrogenase

Probab=97.18  E-value=0.0075  Score=55.85  Aligned_cols=103  Identities=15%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .++||+|+| +|.||+.+++.+.+ .+.++.+ +++...    .+.+   ...|+..+.++++++.     ..+|+||-.
T Consensus        35 ~~~kI~IIG-~G~mG~slA~~L~~-~G~~V~~-~d~~~~----~~~a---~~~gv~~~~~~~e~~~-----~~aDvVila   99 (304)
T PLN02256         35 RKLKIGIVG-FGNFGQFLAKTFVK-QGHTVLA-TSRSDY----SDIA---AELGVSFFRDPDDFCE-----EHPDVVLLC   99 (304)
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHh-CCCEEEE-EECccH----HHHH---HHcCCeeeCCHHHHhh-----CCCCEEEEe
Confidence            357999999 59999999998875 4677774 554321    1111   1345666788888764     268999988


Q ss_pred             CChHhHHHHHHHH-HH--cCCCeEEeCCCCCHHHHHHHHHH
Q 025154          114 TDASTVYDNVKQA-TA--FGMRSVVYVPHIQLETVSALSAF  151 (257)
Q Consensus       114 T~p~~~~~~~~~a-~~--~Gi~vViGTTG~s~e~~~~L~~~  151 (257)
                      +.|....+.+... ..  ..-.+|+-.......-.+.+++.
T Consensus       100 vp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~  140 (304)
T PLN02256        100 TSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQV  140 (304)
T ss_pred             cCHHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHh
Confidence            8888777777655 22  12235554444322233445443

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=97.16  E-value=0.0015  Score=63.32  Aligned_cols=99  Identities=22%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhc-CC-----CCCCeeeec
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCD-ME-----QPLEIPVMS   92 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~~~g-~~-----~~~gv~v~~   92 (257)
                      .++||+|+| .||+||.+.|.+.+.  +++++|++=|..             -.|+--+++.- .+     ....+.++.
T Consensus        74 ~~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~  152 (442)
T PLN02237         74 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVS  152 (442)
T ss_pred             ceEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEE
Confidence            349999999 599999999987655  689999986621             01111111100 00     001233332


Q ss_pred             --CHHHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154           93 --DLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        93 --dl~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                        |+.++- .+    .++|+||+.|-.....+.+...++.|...|+=+
T Consensus       153 ~~dp~~l~W~~----~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS  196 (442)
T PLN02237        153 NRDPLKLPWAE----LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT  196 (442)
T ss_pred             cCCchhCChhh----cCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC
Confidence              333321 11    379999998988888899999999997777654

>PLN02712 arogenate dehydrogenase

Probab=97.10  E-value=0.0083  Score=61.26  Aligned_cols=105  Identities=13%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..++||+|+| .|+||+.+++.+.+. +++|++ +|+.. ..   ..+   ...|+..+.++++++.     ..+|+||-
T Consensus        50 ~~~~kIgIIG-~G~mG~slA~~L~~~-G~~V~~-~dr~~-~~---~~A---~~~Gv~~~~d~~e~~~-----~~aDvViL  114 (667)
T PLN02712         50 TTQLKIAIIG-FGNYGQFLAKTLISQ-GHTVLA-HSRSD-HS---LAA---RSLGVSFFLDPHDLCE-----RHPDVILL  114 (667)
T ss_pred             CCCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEE-EeCCH-HH---HHH---HHcCCEEeCCHHHHhh-----cCCCEEEE
Confidence            3468999999 599999999988754 688765 55431 11   111   2456777888888664     26899998


Q ss_pred             cCChHhHHHHHHHHH-Hc-C-CCeEEeCCCCCHHHHHHHHHHh
Q 025154          113 FTDASTVYDNVKQAT-AF-G-MRSVVYVPHIQLETVSALSAFC  152 (257)
Q Consensus       113 FT~p~~~~~~~~~a~-~~-G-i~vViGTTG~s~e~~~~L~~~a  152 (257)
                      .+.+....+.+.... .. + -.+|+=++.....-.+.+++..
T Consensus       115 avP~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l  157 (667)
T PLN02712        115 CTSIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL  157 (667)
T ss_pred             cCCHHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence            888887777666543 21 1 2366656544433334444443

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.09  E-value=0.0038  Score=51.88  Aligned_cols=82  Identities=23%  Similarity=0.319  Sum_probs=52.4

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecCH---HHHHhccccCCCccEE
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDL---TMVLGSISQSKARAVV  110 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~dl---~~~l~~~~~~~~~DVv  110 (257)
                      |+|.||+|.+|+.+++.+.+. +.++.+.+.++.   ...+      ..++.+    ..|+   .+++      .++|+|
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~------~~~~~~~~~d~~d~~~~~~al------~~~d~v   64 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAED------SPGVEIIQGDLFDPDSVKAAL------KGADAV   64 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHH------CTTEEEEESCTTCHHHHHHHH------TTSSEE
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hccc------ccccccceeeehhhhhhhhhh------hhcchh
Confidence            789999999999999998865 499998886431   1111      112222    2344   4445      379999


Q ss_pred             EEcCC-----hHhHHHHHHHHHHcCCCeEE
Q 025154          111 IDFTD-----ASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       111 IDFT~-----p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      |+.-.     .+.....+..+.+.|++-++
T Consensus        65 i~~~~~~~~~~~~~~~~~~a~~~~~~~~~v   94 (183)
T PF13460_consen   65 IHAAGPPPKDVDAAKNIIEAAKKAGVKRVV   94 (183)
T ss_dssp             EECCHSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred             hhhhhhhcccccccccccccccccccccce
Confidence            98753     23345556666677875544

...

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.08  E-value=0.0023  Score=57.96  Aligned_cols=87  Identities=16%  Similarity=0.285  Sum_probs=57.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee------ecCHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~DV  109 (257)
                      |||.|.|+||- |+.+++.+.+ .++++++-+.... +...  +..   ..+.++      ..++.+.+.+    .++|+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~--~~~---~g~~~v~~g~l~~~~l~~~l~~----~~i~~   68 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHL--YPI---HQALTVHTGALDPQELREFLKR----HSIDI   68 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-cccc--ccc---cCCceEEECCCCHHHHHHHHHh----cCCCE
Confidence            58999999997 9999998875 4688887665432 2111  000   011222      2234455543    67999


Q ss_pred             EEEcCChHhH---HHHHHHHHHcCCCeE
Q 025154          110 VIDFTDASTV---YDNVKQATAFGMRSV  134 (257)
Q Consensus       110 vIDFT~p~~~---~~~~~~a~~~Gi~vV  134 (257)
                      |||.|+|-+.   ......|.+.|+|.+
T Consensus        69 VIDAtHPfA~~is~~a~~a~~~~~ipyl   96 (256)
T TIGR00715        69 LVDATHPFAAQITTNATAVCKELGIPYV   96 (256)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence            9999998664   456688899999987

This enzyme was found to be a monomer by gel filtration.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.08  E-value=0.015  Score=53.26  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=62.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCe--eeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ..||+|+| +|.||..+++.+... +. .-+.++|+..  .......    ..|+  .+..++++++.      ++|+||
T Consensus         6 ~~~I~IIG-~G~mG~sla~~l~~~-g~~~~V~~~dr~~--~~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVi   71 (307)
T PRK07502          6 FDRVALIG-IGLIGSSLARAIRRL-GLAGEIVGADRSA--ETRARAR----ELGLGDRVTTSAAEAVK------GADLVI   71 (307)
T ss_pred             CcEEEEEe-eCHHHHHHHHHHHhc-CCCcEEEEEECCH--HHHHHHH----hCCCCceecCCHHHHhc------CCCEEE
Confidence            46899999 599999999988754 43 2344666531  1111111    1222  34567777774      799999


Q ss_pred             EcCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 025154          112 DFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~  161 (257)
                      ..+.+....+.+....   +.+. +|+-.++.+.+..+.+.+...+ ++.++-
T Consensus        72 iavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~~~~-~~~~v~  122 (307)
T PRK07502         72 LCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPHLPE-GVHFIP  122 (307)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHhCCC-CCeEEe
Confidence            8887766555544332   3343 4554555555444445443322 344443

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.06  E-value=0.0012  Score=57.35  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||+|+||+|+.|+.|++.+. ..++|+++++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn   33 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRN   33 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeC
Confidence            799999999999999999876 689999999864

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.04  E-value=0.01  Score=57.53  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=68.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+|+|++|.||+.+++.+.. .+.++. ++++..  ....+++   ...|+...+++++.+.      .+|+||-.+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~-~G~~V~-v~~r~~--~~~~~~a---~~~gv~~~~~~~e~~~------~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKE-KGFEVI-VTGRDP--KKGKEVA---KELGVEYANDNIDAAK------DADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHH-CCCEEE-EEECCh--HHHHHHH---HHcCCeeccCHHHHhc------cCCEEEEecC
Confidence            5899998679999999998864 566654 345431  1111222   1345666678887774      7899998887


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~s  162 (257)
                      ++...+.+......  .-.+|+-++.....-.+.+++.... +..++-+
T Consensus        68 ~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~-~~~~V~~  115 (437)
T PRK08655         68 INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE-GVEILPT  115 (437)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC-CCEEEEc
Confidence            77776666555432  1225554444334445566665432 3444433

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.01  E-value=0.0051  Score=56.28  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------ecCHHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D  108 (257)
                      |||.|+||+|.+|+.+++.+.+ .++++.+...+..   ....+.    ..++.+       .+++.++++      ++|
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~-~g~~V~~l~R~~~---~~~~l~----~~~v~~v~~Dl~d~~~l~~al~------g~d   66 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALD-EGYQVRCLVRNLR---KASFLK----EWGAELVYGDLSLPETLPPSFK------GVT   66 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEcChH---HhhhHh----hcCCEEEECCCCCHHHHHHHHC------CCC
Confidence            5899999999999999998875 5789887764321   111111    112222       123445563      789


Q ss_pred             EEEEcCCh-------------HhHHHHHHHHHHcCCC-eE-EeCCC-----CCH--HHHHHHHHHhhhcCceEEE
Q 025154          109 VVIDFTDA-------------STVYDNVKQATAFGMR-SV-VYVPH-----IQL--ETVSALSAFCDKASMGCLI  161 (257)
Q Consensus       109 VvIDFT~p-------------~~~~~~~~~a~~~Gi~-vV-iGTTG-----~s~--e~~~~L~~~a~~~gipvl~  161 (257)
                      +||.+...             ......+++|.+.|+. +| +++.|     .++  +...+.+++.++.++++.+
T Consensus        67 ~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~ti  141 (317)
T CHL00194         67 AIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYTI  141 (317)
T ss_pred             EEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeEE
Confidence            99987531             1224566778888874 43 23322     111  1123456666776777543

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=96.99  E-value=0.0026  Score=61.06  Aligned_cols=98  Identities=20%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcc-------hhhhhcCCCCCCeeeec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGED-------IGMVCDMEQPLEIPVMS   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d-------~g~~~g~~~~~gv~v~~   92 (257)
                      ++||+|+|+ ||+||.+.+.+.+.  +..+|+++=|..             ..|+-       .+..+-.. ...+.++.
T Consensus        60 ~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~-gk~I~v~~  137 (395)
T PLN03096         60 KIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD-GKVIKVVS  137 (395)
T ss_pred             ccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC-CEEEEEEE
Confidence            389999997 99999999998766  689999775411             00110       01100000 11234432


Q ss_pred             --CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154           93 --DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        93 --dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                        |++++-=   .+.++|+||+.|-.....+.+...++.|...|+=+
T Consensus       138 ~~dp~~~~w---~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS  181 (395)
T PLN03096        138 DRNPLNLPW---GELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT  181 (395)
T ss_pred             cCCcccccc---cccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence              4554321   01379999999988888889999999997777544

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=96.98  E-value=0.0026  Score=61.46  Aligned_cols=99  Identities=20%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhhc-CC-----CCCCeeee--c
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVCD-ME-----QPLEIPVM--S   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g~~~g-~~-----~~~gv~v~--~   92 (257)
                      |+||+|+| .||+||.+.+.+.++++++++++-|+..              .|+-.+++.- ..     ....+.++  .
T Consensus        85 ~~kvgInG-FGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~  163 (421)
T PLN02272         85 KTKIGING-FGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR  163 (421)
T ss_pred             ceEEEEEC-cCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence            57999999 5999999999887678999999877321              0111111100 00     00112333  2


Q ss_pred             CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCC-CeEEeC
Q 025154           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYV  137 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi-~vViGT  137 (257)
                      +++++-=   ++.++|+|++.|-.....+.+...++.|. .+||-.
T Consensus       164 dp~~~~w---~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIda  206 (421)
T PLN02272        164 DPAEIPW---GDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISA  206 (421)
T ss_pred             CcccCcc---cccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECC
Confidence            4444321   01268999988877777788888888885 344443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.97  E-value=0.0033  Score=54.08  Aligned_cols=123  Identities=14%  Similarity=0.170  Sum_probs=66.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCC-CCCCeeeecCHHHHHhcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDME-QPLEIPVMSDLTMVLGSI  101 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~~~g~~-~~~gv~v~~dl~~~l~~~  101 (257)
                      |||+|+| .|.+|-.++..++ +.+++++| +|.+             .......+++... ......+++|.++.+.  
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--   75 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK--   75 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred             CEEEEEC-CCcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence            7999999 6999999997665 67898887 4521             1111122222110 0234567788888775  


Q ss_pred             ccCCCccEEEEcC-Ch------------HhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHH-HHHHhhh-cCceEEEcc
Q 025154          102 SQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSA-LSAFCDK-ASMGCLIAP  163 (257)
Q Consensus       102 ~~~~~~DVvIDFT-~p------------~~~~~~~~~a~~~Gi~vViGTT---G~s~e~~~~-L~~~a~~-~gipvl~sp  163 (257)
                          ++|+++-+- +|            ..+.+.+...++.+.-+|+.+|   |.+++.... |++...+ ....+.++|
T Consensus        76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P  151 (185)
T PF03721_consen   76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP  151 (185)
T ss_dssp             ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred             ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence                689776542 22            3445566666677888888887   777755433 4444421 235677777


Q ss_pred             CchH
Q 025154          164 TLSI  167 (257)
Q Consensus       164 NfSl  167 (257)
                      =|=.
T Consensus       152 Erl~  155 (185)
T PF03721_consen  152 ERLR  155 (185)
T ss_dssp             ----
T ss_pred             CccC
Confidence            6543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.96  E-value=0.013  Score=53.36  Aligned_cols=193  Identities=17%  Similarity=0.250  Sum_probs=115.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC--------cEEEEEEecC--CCCcch------hhhhc-CCCCCCeeeecCHHHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSH--SVGEDI------GMVCD-MEQPLEIPVMSDLTMV   97 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~--------~eLvg~vd~~--~~g~d~------g~~~g-~~~~~gv~v~~dl~~~   97 (257)
                      .++|+++|| |.+|+.+.+.+..-..        +.++++.|..  ...+|.      .+|.. .....+-  .-+++++
T Consensus         3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~--alsLdaL   79 (364)
T KOG0455|consen    3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS--ALSLDAL   79 (364)
T ss_pred             cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC--cccHHHH
Confidence            578999995 9999999988865433        5688888732  111221      11110 0001111  1247777


Q ss_pred             HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHHHhhhcCceEEEccCchHHHHH-HH
Q 025154           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGCLIAPTLSIGSIL-LQ  173 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT---G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl-l~  173 (257)
                      ++.+.....+-+++|.|......+....+++.|+.++  |+   .|+. ..+..++++.....|-|+-.--++|.-| +-
T Consensus        80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~Ia--tpNKKafss-~l~~y~~l~~~~~s~~fi~HEatVGAGLPiI  156 (364)
T KOG0455|consen   80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIA--TPNKKAFSS-TLEHYDKLALHSKSPRFIRHEATVGAGLPII  156 (364)
T ss_pred             HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEe--cCCcccccc-cHHHHHHHHhcCCCCceEEeeccccCCchhH
Confidence            7665545667899999999999999999999999976  44   3543 2333444444433566666666777755 22


Q ss_pred             HHHHHhcCCCCCeEEEeccCCCCCCCCCccHHHH------------------HHhhhccccCCCCCCC-ceeeeeecCCc
Q 025154          174 QAAISASFHYKNVEIVESRPNARVRYMTRTLISM------------------QVCLRHIYLYPKFQNN-NSFHTKRKLKI  234 (257)
Q Consensus       174 ~~a~~l~~~~~DiEIiE~HH~~K~DapSGTa~~l------------------~~~~r~g~~~~r~~~~-Igi~s~R~G~I  234 (257)
                      ...+++-..+..++=+|-       .-|||+-.+                  ......|+++|-+.++ -|...-|.+.|
T Consensus       157 s~L~eiI~tGDev~kIeG-------ifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGYTEPDPRDDLnGmDVARKvtI  229 (364)
T KOG0455|consen  157 SSLNEIISTGDEVHKIEG-------IFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEPDPRDDLNGMDVARKVTI  229 (364)
T ss_pred             HHHHHHHhcCCceeEEEE-------EeeccHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCCCcccccccchhhhhhhh
Confidence            222222223445544442       234554433                  1233568887755444 57889999999


Q ss_pred             ceeecc
Q 025154          235 ASSIIG  240 (257)
Q Consensus       235 vG~f~g  240 (257)
                      ++.+.|
T Consensus       230 l~Ri~G  235 (364)
T KOG0455|consen  230 LARILG  235 (364)
T ss_pred             hhhhcc
Confidence            998554

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=96.94  E-value=0.0019  Score=59.91  Aligned_cols=86  Identities=21%  Similarity=0.185  Sum_probs=62.4

Q ss_pred             EecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC------ChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154           67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus        67 vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT------~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      +|+...|++++++++.  ..++|++++++++ .     ..+|++|-=.      .|+.+.+.+..|+++|++||.|---+
T Consensus         1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~   72 (301)
T PF07755_consen    1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF   72 (301)
T ss_dssp             E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred             CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence            5777889999999886  3899999999999 3     4899888642      58899999999999999999987653


Q ss_pred             CHHHHHHHHHHhhhcCceEEE
Q 025154          141 QLETVSALSAFCDKASMGCLI  161 (257)
Q Consensus       141 s~e~~~~L~~~a~~~gipvl~  161 (257)
                       ..+..+|.++|+++|+.++-
T Consensus        73 -L~ddpel~~~A~~~g~~i~D   92 (301)
T PF07755_consen   73 -LSDDPELAAAAKKNGVRIID   92 (301)
T ss_dssp             -HCCHHHHHCCHHCCT--EEE
T ss_pred             -hccCHHHHHHHHHcCCeEee
Confidence             23456899999998887773

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.90  E-value=0.0087  Score=58.90  Aligned_cols=118  Identities=16%  Similarity=0.121  Sum_probs=68.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh-----------hcCC-CCCC-eeeecCHHHHHhcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV-----------CDME-QPLE-IPVMSDLTMVLGSI  101 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~~-----------~g~~-~~~g-v~v~~dl~~~l~~~  101 (257)
                      +||+|+|+ |.||..++..+.. .++++. ++|+.... ....+.           .+.. ...+ +.+.+|++++++  
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~-~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--   79 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLL-AGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--   79 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence            58999995 9999999998874 578765 56743100 011000           0000 0112 567789988875  


Q ss_pred             ccCCCccEEEEcCChHh-----HHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          102 SQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       102 ~~~~~~DVvIDFT~p~~-----~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                          ++|+||....++.     ++.-+...+..+.-+.+.|.|++..+   +.+.+++.+.-++-.||.
T Consensus        80 ----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~n  141 (495)
T PRK07531         80 ----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPYN  141 (495)
T ss_pred             ----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecCC
Confidence                7999997765443     12223333344444556666888654   445555555556666654

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.0033  Score=58.56  Aligned_cols=105  Identities=14%  Similarity=0.196  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC------ChHhHHH
Q 025154           48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD  121 (257)
Q Consensus        48 G~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT------~p~~~~~  121 (257)
                      |+...-++.....+.+++++|....+.+....++. ...++++.++++++++.     ..|++|.-.      .|+...+
T Consensus        15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~-~~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~   88 (339)
T COG3367          15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGG-DKADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWRE   88 (339)
T ss_pred             chhhhhhhcccccceeeeEEeeeccccccHHHhCC-ccCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHH
Confidence            55555555556669999999987666444433333 36799999999999973     458877764      4788889


Q ss_pred             HHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceE
Q 025154          122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC  159 (257)
Q Consensus       122 ~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipv  159 (257)
                      .+..|+++|++||.|---+ .++...+.++|++.|+.+
T Consensus        89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~rl  125 (339)
T COG3367          89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGVRL  125 (339)
T ss_pred             HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCCee
Confidence            9999999999999876655 566778999999977633

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.89  E-value=0.014  Score=57.54  Aligned_cols=118  Identities=10%  Similarity=0.098  Sum_probs=65.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeeecCHHHHHhccccCCCccEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      .+.+|+++| .|.||+.+++.+.. .+++|+ ++|+..  .....+.......|   +..+++++++.+.+   ..+|+|
T Consensus         5 ~~~~IG~IG-LG~MG~~mA~nL~~-~G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dvI   76 (493)
T PLN02350          5 ALSRIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRSV   76 (493)
T ss_pred             CCCCEEEEe-eHHHHHHHHHHHHh-CCCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCEE
Confidence            356899999 69999999999874 678776 677531  11222221000112   23567888877521   248877


Q ss_pred             EEc-CChHhHHHH---HHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          111 IDF-TDASTVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       111 IDF-T~p~~~~~~---~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      |-. +.++.+.+.   +..+++.|.=+|-++|. +.++..++.+.+++.|+..+
T Consensus        77 i~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~-~~~~t~~~~~~l~~~Gi~fl  129 (493)
T PLN02350         77 IILVKAGAPVDQTIKALSEYMEPGDCIIDGGNE-WYENTERRIKEAAEKGLLYL  129 (493)
T ss_pred             EEECCCcHHHHHHHHHHHhhcCCCCEEEECCCC-CHHHHHHHHHHHHHcCCeEE
Confidence            743 234444333   33344455444434443 34445556666666566533

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.88  E-value=0.016  Score=55.54  Aligned_cols=122  Identities=15%  Similarity=0.146  Sum_probs=65.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-C--------------CCCCC-eeeecCHHHHHh
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-M--------------EQPLE-IPVMSDLTMVLG   99 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g-~--------------~~~~g-v~v~~dl~~~l~   99 (257)
                      |||+|+| .|.||..++..+. ..++++++ +|...  ..+..+.. .              ....| +..++++++++.
T Consensus         1 mkI~vIG-lG~~G~~lA~~La-~~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         1 MKIAVIG-LGYVGLPLAALLA-DLGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             CEEEEEC-CCchhHHHHHHHH-hcCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence            5899999 5999999999876 46788765 56421  00111110 0              00113 566778888774


Q ss_pred             ccccCCCccEEEEcCC-hH---------hHHHHH---HHHHHcCCCeEEeCC---CCCHHHHHHHHHH-h--h-hcCceE
Q 025154          100 SISQSKARAVVIDFTD-AS---------TVYDNV---KQATAFGMRSVVYVP---HIQLETVSALSAF-C--D-KASMGC  159 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~-p~---------~~~~~~---~~a~~~Gi~vViGTT---G~s~e~~~~L~~~-a--~-~~gipv  159 (257)
                            ++|++|-... |.         ...+.+   ...++.|.-+|..+|   |.+.+-.+.+.+. .  + ....++
T Consensus        76 ------~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v  149 (411)
T TIGR03026        76 ------DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL  149 (411)
T ss_pred             ------hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence                  7998886542 32         133322   223344555555444   4443322233221 1  0 112588


Q ss_pred             EEccCchHH
Q 025154          160 LIAPTLSIG  168 (257)
Q Consensus       160 l~spNfSlG  168 (257)
                      ..+|.|..-
T Consensus       150 ~~~Pe~~~~  158 (411)
T TIGR03026       150 AYNPEFLRE  158 (411)
T ss_pred             EECCCcCCC
Confidence            999987643

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.87  E-value=0.0059  Score=56.87  Aligned_cols=113  Identities=12%  Similarity=0.149  Sum_probs=68.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      .||+|+| +|+||+++++.+.. .+++++...++.  ......+.    +.|+.+. +.+++++      .+|+|+-...
T Consensus         4 kkIgiIG-~G~mG~AiA~~L~~-sG~~Viv~~~~~--~~~~~~a~----~~Gv~~~-s~~ea~~------~ADiVvLaVp   68 (314)
T TIGR00465         4 KTVAIIG-YGSQGHAQALNLRD-SGLNVIVGLRKG--GASWKKAT----EDGFKVG-TVEEAIP------QADLIMNLLP   68 (314)
T ss_pred             CEEEEEe-EcHHHHHHHHHHHH-CCCeEEEEECcC--hhhHHHHH----HCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence            5899999 59999999998874 567765545432  11222221    2355554 4677764      7999997777


Q ss_pred             hHhHHHHHH----HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHH
Q 025154          116 ASTVYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG  168 (257)
Q Consensus       116 p~~~~~~~~----~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlG  168 (257)
                      |+.....+.    ..++.+ .+|+=..|++-+..   +..-.+ +++|+ +.||...-
T Consensus        69 p~~~~~~v~~ei~~~l~~g-~iVs~aaG~~i~~~---~~~~~~-~~~VvrvmPn~p~~  121 (314)
T TIGR00465        69 DEVQHEVYEAEIQPLLKEG-KTLGFSHGFNIHFV---QIVPPK-DVDVVMVAPKGPGT  121 (314)
T ss_pred             cHhHHHHHHHHHHhhCCCC-cEEEEeCCccHhhc---cccCCC-CCcEEEECCCCCcH
Confidence            773333222    223334 36766779986543   332221 24555 78888754

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02522 ATP citrate (pro-S)-lyase

Probab=96.86  E-value=0.0041  Score=62.69  Aligned_cols=80  Identities=16%  Similarity=0.281  Sum_probs=61.5

Q ss_pred             CCCeeeecCHHHHHhccccCCCccEEEEcCChHhHHH-HHHHHHHcCCCeEEe-CCCCCHHHHHHHHHHhhhcCceEEEc
Q 025154           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYD-NVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIA  162 (257)
Q Consensus        85 ~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~-~~~~a~~~Gi~vViG-TTG~s~e~~~~L~~~a~~~gipvl~s  162 (257)
                      ..++|||++++++.++   ..++|+.|.|-+|..+.+ .++.|.+.|++.++- |.|+.+.+.++|.++|+++|+. ++.
T Consensus        60 ~~~iPVf~tv~eA~~~---~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lIG  135 (608)
T PLN02522         60 EIAIPVHGSIEAACKA---HPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VIG  135 (608)
T ss_pred             eeCccccchHHHHHHh---CCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EEC
Confidence            5689999999999974   136899999998777665 555555679886655 5599887778899999999875 678


Q ss_pred             cCchHHH
Q 025154          163 PTLSIGS  169 (257)
Q Consensus       163 pNfSlGv  169 (257)
                      || ++|+
T Consensus       136 PN-c~Gi  141 (608)
T PLN02522        136 PA-TVGG  141 (608)
T ss_pred             CC-CCee
Confidence            88 4455

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.85  E-value=0.0071  Score=53.45  Aligned_cols=118  Identities=14%  Similarity=0.193  Sum_probs=73.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-CCCCeeee-----cCHHHHHhcccc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSISQ  103 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~-~~~gv~v~-----~dl~~~l~~~~~  103 (257)
                      .+||+|.| .|++|+.+++.+.+ .+..+|++.|+.     . |-|..++.... ...++..+     .+.++++.    
T Consensus        23 g~~vaIqG-fGnVG~~~a~~L~~-~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----   95 (217)
T cd05211          23 GLTVAVQG-LGNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG----   95 (217)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHH-cCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee----
Confidence            47999999 59999999998874 589999999953     3 55544333110 01122221     13355554    


Q ss_pred             CCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus       104 ~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSlG  168 (257)
                       .++||+|..+.....  +-..+.+.+.++|++--  .++++..+.|    ++.  .++|.|-+-..
T Consensus        96 -~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L----~~~--Gi~v~Pd~~~N  153 (217)
T cd05211          96 -LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL----HER--GIVVAPDIVAN  153 (217)
T ss_pred             -ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHhc
Confidence             489999988865433  33444567899999765  3455433333    343  47777877653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.84  E-value=0.0029  Score=51.58  Aligned_cols=109  Identities=17%  Similarity=0.099  Sum_probs=62.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe----eeecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv----~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      ..||+|+|+ |.||+.+++.+.+.. ..-+.++++..  ....++..   ..+.    ..+.+++++++      ++|+|
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~Dvv   85 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL--EKAKALAE---RFGELGIAIAYLDLEELLA------EADLI   85 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHHH---HHhhcccceeecchhhccc------cCCEE
Confidence            468999996 999999999887653 44455666531  11122211   1121    13456666653      79999


Q ss_pred             EEcCChHhH----HHHHHHHHHcCCCeE-EeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          111 IDFTDASTV----YDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       111 IDFT~p~~~----~~~~~~a~~~Gi~vV-iGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      |-.+.+...    .......++.+.-++ +.++...  .  .+.+.+++.|+.++
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~--~--~l~~~~~~~g~~~v  136 (155)
T cd01065          86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLE--T--PLLKEARALGAKTI  136 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCC--C--HHHHHHHHCCCcee
Confidence            988866553    112233455665444 2233221  1  56677778777665

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.78  E-value=0.016  Score=52.50  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=57.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-e-eecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-P-VMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~-v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |||+|+| +|.||..++..+.+ .++++. ++|+..  .......    ..|. . ..++.+ .+.      ++|+||..
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~-~g~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~-~~~------~aDlVila   64 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRS-LGHTVY-GVSRRE--STCERAI----ERGLVDEASTDLS-LLK------DCDLVILA   64 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCcccccCCHh-Hhc------CCCEEEEc
Confidence            5899999 59999999998875 467754 456431  1111221    1121 1 233443 443      79999988


Q ss_pred             CChHhHHHHHHHHHHc-C-CCeEEeCCCCCHHHHHHHH
Q 025154          114 TDASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALS  149 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~-G-i~vViGTTG~s~e~~~~L~  149 (257)
                      +.+....+.+...... + -.+|+-+++...+..+.+.
T Consensus        65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~  102 (279)
T PRK07417         65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE  102 (279)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH
Confidence            8877777766655443 2 2355555556554444443

>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.76  E-value=0.0051  Score=56.52  Aligned_cols=113  Identities=16%  Similarity=0.247  Sum_probs=80.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE---E
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---V  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---v  110 (257)
                      +.+|.|+|.  |.|+.-+.++... ++++|+|++..-.  +.-.+++   ..+||+.|...|++-+      ++|+   |
T Consensus         4 pksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVv   70 (361)
T COG4693           4 PKSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVV   70 (361)
T ss_pred             CceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEE
Confidence            348999994  9999988888776 8999999987421  1112333   3689999999999875      5663   3


Q ss_pred             EEcC-ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 025154          111 IDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (257)
Q Consensus       111 IDFT-~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~  161 (257)
                      |--+ .-..-.+.++..+++|++|+.+-+ +-++++..+.++|++.|....+
T Consensus        71 Vrsai~Gg~Gs~larall~RGi~VlqEHP-l~p~di~~l~rlA~rqG~~y~v  121 (361)
T COG4693          71 VRSAIVGGQGSALARALLARGIHVLQEHP-LHPRDIQDLLRLAERQGRRYLV  121 (361)
T ss_pred             EeeeeecCCcHHHHHHHHHcccHHHHhCC-CCHHHHHHHHHHHHHhCcEEEE
Confidence            3222 233446778888999999988777 4466788888888887765553

>PRK08223 hypothetical protein; Validated

Probab=96.76  E-value=0.017  Score=53.34  Aligned_cols=96  Identities=21%  Similarity=0.280  Sum_probs=59.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchh-----hhhcCCCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIG-----MVCDMEQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~g-----~~~g~~~~~gv~v~--   91 (257)
                      .-||+|+|+ |.+|..+++.++. .++.=..++|.+                ..|+.-.     .+..+.....|.++  
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA~-aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~  104 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLAR-LGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE  104 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHH-hCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            358999996 9999999998874 566666777732                0111100     11111111122221  


Q ss_pred             ----cCHHHHHhccccCCCccEEEEcCCh---HhHHHHHHHHHHcCCCeEEeCC
Q 025154           92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDFT~p---~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                          ++.+++++      ++|+|||.+..   +.-+..-..|.++|+|+|.|.+
T Consensus       105 ~l~~~n~~~ll~------~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~  152 (287)
T PRK08223        105 GIGKENADAFLD------GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP  152 (287)
T ss_pred             ccCccCHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence                34556664      68998988753   5556677888899999888743

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=96.76  E-value=0.019  Score=53.29  Aligned_cols=139  Identities=18%  Similarity=0.196  Sum_probs=86.3

Q ss_pred             cccccccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCH
Q 025154           15 ISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL   94 (257)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl   94 (257)
                      .++++...+.+..+++-+.++.|||-+| .|-||..++..+.. .++.++ ++|+..  .-..++.    +.|..+.+++
T Consensus        15 ~~~~~~~~~~~~~s~~~~~s~~~iGFIG-LG~MG~~M~~nLik-~G~kVt-V~dr~~--~k~~~f~----~~Ga~v~~sP   85 (327)
T KOG0409|consen   15 FSRRLVKASETAMSSRITPSKTRIGFIG-LGNMGSAMVSNLIK-AGYKVT-VYDRTK--DKCKEFQ----EAGARVANSP   85 (327)
T ss_pred             hcccccccccccccccCCcccceeeEEe-eccchHHHHHHHHH-cCCEEE-EEeCcH--HHHHHHH----HhchhhhCCH
Confidence            3455555444444444444678999999 79999999999885 577765 566431  1112232    4577888999


Q ss_pred             HHHHhccccCCCccEEEEc-CChHhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154           95 TMVLGSISQSKARAVVIDF-TDASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDF-T~p~~~~~~~~~------a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      .|+.+      .+||+|-. +.|..+.+.+.-      .+.-|.+..|--|..+++-..+|.+.++..+ +.++-+--|=
T Consensus        86 aeVae------~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~-~~~vDAPVSG  158 (327)
T KOG0409|consen   86 AEVAE------DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG-GRFVDAPVSG  158 (327)
T ss_pred             HHHHh------hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC-CeEEeccccC
Confidence            99985      78987753 566666655432      2224444434445566777777877776655 3444444554


Q ss_pred             HH
Q 025154          168 GS  169 (257)
Q Consensus       168 Gv  169 (257)
                      |+
T Consensus       159 g~  160 (327)
T KOG0409|consen  159 GV  160 (327)
T ss_pred             Cc
Confidence            54

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.70  E-value=0.022  Score=52.47  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=75.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT-  114 (257)
                      +||+.+| .|.||.-+++.+. +.++++. ++|+.. .+. .+++   ...|.....++.++..      .+||||-+= 
T Consensus         1 ~kIafIG-LG~MG~pmA~~L~-~aG~~v~-v~~r~~-~ka-~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIG-LGIMGSPMAANLL-KAGHEVT-VYNRTP-EKA-AELL---AAAGATVAASPAEAAA------EADVVITMLP   66 (286)
T ss_pred             CeEEEEc-CchhhHHHHHHHH-HCCCEEE-EEeCCh-hhh-hHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence            5899999 7999999999987 4577665 566431 111 2222   1346777888877775      799988763 


Q ss_pred             ChHhHHHHHH---HHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          115 DASTVYDNVK---QATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       115 ~p~~~~~~~~---~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                      .++.+.+.+.   -.++   .|.-+|- .+..+++..+++.+.+++.|...+=+|=
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lDAPV  121 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLDAPV  121 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEecCc
Confidence            4555555442   2333   3555544 4446788888999999998888776663

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.69  E-value=0.013  Score=52.47  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=26.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..||+|+|+ |.+|..+++.+.. .++.=..++|.
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~-~Gvg~i~lvD~   56 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAA-AGVGNLTLLDF   56 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeC
Confidence            358999996 9999999998875 56666667774

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.66  E-value=0.0052  Score=55.94  Aligned_cols=80  Identities=21%  Similarity=0.308  Sum_probs=49.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT-  114 (257)
                      |||.|+|++|-+|+.+.+.+.+ .++++++. ++..  .|+            .-.+.+.+.+.+    .+||+||.+. 
T Consensus         1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--~dl------------~d~~~~~~~~~~----~~pd~Vin~aa   60 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--LDL------------TDPEAVAKLLEA----FKPDVVINCAA   60 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--S-T------------TSHHHHHHHHHH----H--SEEEE---
T ss_pred             CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--cCC------------CCHHHHHHHHHH----hCCCeEeccce
Confidence            7999999999999999998764 77887776 3321  111            112233455543    4799999874 


Q ss_pred             ---------ChHhH--------HHHHHHHHHcCCCeEE
Q 025154          115 ---------DASTV--------YDNVKQATAFGMRSVV  135 (257)
Q Consensus       115 ---------~p~~~--------~~~~~~a~~~Gi~vVi  135 (257)
                               .|+..        ...++.|.+.|.++|-
T Consensus        61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~   98 (286)
T PF04321_consen   61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIH   98 (286)
T ss_dssp             ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEE
T ss_pred             eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEE
Confidence                     33322        2456788889999873

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.62  E-value=0.031  Score=50.44  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=48.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |||+|+| .|.||+.+++.+.+. ++  ++. ++|+..  .......    ..|+. ...+++++.       ++|+||-
T Consensus         1 m~I~iIG-~G~mG~sla~~l~~~-g~~~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vil   64 (275)
T PRK08507          1 MKIGIIG-LGLMGGSLGLALKEK-GLISKVY-GYDHNE--LHLKKAL----ELGLVDEIVSFEELK-------KCDVIFL   64 (275)
T ss_pred             CEEEEEc-cCHHHHHHHHHHHhc-CCCCEEE-EEcCCH--HHHHHHH----HCCCCcccCCHHHHh-------cCCEEEE
Confidence            4899999 599999999988754 43  444 466431  1111111    22332 234666643       4899998


Q ss_pred             cCChHhHHHHHHHHH
Q 025154          113 FTDASTVYDNVKQAT  127 (257)
Q Consensus       113 FT~p~~~~~~~~~a~  127 (257)
                      .+.|+...+.+....
T Consensus        65 avp~~~~~~~~~~l~   79 (275)
T PRK08507         65 AIPVDAIIEILPKLL   79 (275)
T ss_pred             eCcHHHHHHHHHHHh
Confidence            888888877776554

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.62  E-value=0.036  Score=49.44  Aligned_cols=95  Identities=17%  Similarity=0.222  Sum_probs=56.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh----h-----hhcCCCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG----M-----VCDMEQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g----~-----~~g~~~~~gv~v~--   91 (257)
                      ..||+|+|+ |..|..+++.+.. .++.=.-++|...     ..       .++|    +     +..+.....+..+  
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar-~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALAR-SGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            358999995 9999999999875 4554444566320     00       1111    0     1111001112222  


Q ss_pred             ----cCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEe
Q 025154           92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViG  136 (257)
                          +++++++.     .++|+|||.. .++.-.....+|.++++|+|..
T Consensus        89 ~i~~~~~~~l~~-----~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s  133 (231)
T cd00755          89 FLTPDNSEDLLG-----GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS  133 (231)
T ss_pred             ecCHhHHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence                23445554     3689999986 4566677888899999999854

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02858 fructose-bisphosphate aldolase

Probab=96.61  E-value=0.03  Score=61.59  Aligned_cols=119  Identities=15%  Similarity=0.092  Sum_probs=76.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +-.||+++| .|.||..+++.+.. .++++. ++|+..  .....+.    ..|..+.+++.++.+      .+|+||-+
T Consensus         3 ~~~~IGfIG-LG~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVG-LDSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVVV   67 (1378)
T ss_pred             CCCeEEEEc-hhHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEE
Confidence            446899999 69999999999874 578875 677531  1122332    346677889999885      68987754


Q ss_pred             C-ChHhHHHHH---HHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcC--ceEEEccCchHHH
Q 025154          114 T-DASTVYDNV---KQATA---FGMRSVVYVPHIQLETVSALSAFCDKAS--MGCLIAPTLSIGS  169 (257)
Q Consensus       114 T-~p~~~~~~~---~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~g--ipvl~spNfSlGv  169 (257)
                      - .++.+.+.+   ...++   .| .+|+-++..+++..+++.+.+++.|  +..+=+ -.|=|.
T Consensus        68 l~~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa-PVsGg~  130 (1378)
T PLN02858         68 LSHPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDA-YVSKGM  130 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc-cCcCCH
Confidence            3 445555543   12232   23 3566666677778888888777766  554433 344344

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.60  E-value=0.015  Score=49.43  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=24.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ||+|+|+ |.||..+++.+.. .++.=+.++|.
T Consensus         1 ~VlViG~-GglGs~ia~~La~-~Gvg~i~lvD~   31 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLAR-SGVGNLKLVDF   31 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            6999996 9999999998874 56654556774

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.53  E-value=0.026  Score=45.79  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=24.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ||.|+|+ |++|..+++.+.. .++.=..++|.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~-~Gv~~i~ivD~   31 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLAR-SGVGKITLIDF   31 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-CCCCEEEEEcC
Confidence            6899996 9999999999874 56655567774

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.53  E-value=0.019  Score=53.94  Aligned_cols=95  Identities=21%  Similarity=0.237  Sum_probs=58.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh-----------hhhcCCCCCCeeee
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG-----------MVCDMEQPLEIPVM   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g-------~d~g-----------~~~g~~~~~gv~v~   91 (257)
                      ..||+|+|+ |.+|..+++.+.. .++.-+.++|....     .       .|++           .+..+.....+..+
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~-aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVR-AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            458999996 9999999998874 57766667774310     1       1111           01111011122111


Q ss_pred             ------cCHHHHHhccccCCCccEEEEcCCh-HhHHHHHHHHHHcCCCeEEeC
Q 025154           92 ------SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        92 ------~dl~~~l~~~~~~~~~DVvIDFT~p-~~~~~~~~~a~~~Gi~vViGT  137 (257)
                            .++++++.      ++|+|||.+.. +.-.-.-..|.++|+|+|.|.
T Consensus       102 ~~~~~~~~~~~~~~------~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~  148 (338)
T PRK12475        102 VTDVTVEELEELVK------EVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG  148 (338)
T ss_pred             eccCCHHHHHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                  23455663      79999999854 443445578889999999764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.52  E-value=0.066  Score=48.91  Aligned_cols=95  Identities=15%  Similarity=0.228  Sum_probs=57.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCc-------chh---------hhhcCCCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE-------DIG---------MVCDMEQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~-------d~g---------~~~g~~~~~gv~v~--   91 (257)
                      ..+|+|+|+ |..|..+++.++. .++.=+-++|..     ...+       ++|         .+..+.....+..+  
T Consensus        30 ~s~VlVvG~-GGVGs~vae~Lar-~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~  107 (268)
T PRK15116         30 DAHICVVGI-GGVGSWAAEALAR-TGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD  107 (268)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence            358999995 9999999998875 454444456632     1111       111         01111001112111  


Q ss_pred             ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEe
Q 025154           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViG  136 (257)
                          ++.++++.     .++|+|||... +..-....++|.++++|+|..
T Consensus       108 ~i~~e~~~~ll~-----~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~  152 (268)
T PRK15116        108 FITPDNVAEYMS-----AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTT  152 (268)
T ss_pred             ccChhhHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence                23445553     36899999874 466677889999999998843

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.49  E-value=0.032  Score=54.87  Aligned_cols=123  Identities=11%  Similarity=0.075  Sum_probs=68.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecC-------------CCCcchhhhhcCCCCCCeeeecCHHHHHhc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSH-------------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~-------------~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~  100 (257)
                      ||||+|+| .|.||..++-.+++. .+++++++ |..             .......+++.........+++|+++.+. 
T Consensus         1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~-   77 (473)
T PLN02353          1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA-   77 (473)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh-
Confidence            68999999 599999999877754 36878765 521             01112223321100112566788887774 


Q ss_pred             cccCCCccEEEEc-CChH-----------------hHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHHHhhhcCceE
Q 025154          101 ISQSKARAVVIDF-TDAS-----------------TVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGC  159 (257)
Q Consensus       101 ~~~~~~~DVvIDF-T~p~-----------------~~~~~~~~a~~~Gi~vViGTT---G~s~e~~~~L~~~a~~~gipv  159 (257)
                           ++|++|-. .+|.                 .+.+.+...++.|.-||+.+|   |.+++-.+.|.+........+
T Consensus        78 -----~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v  152 (473)
T PLN02353         78 -----EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI  152 (473)
T ss_pred             -----cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence                 78987654 2332                 112222333455777777777   666544444554322112456


Q ss_pred             EEccCc
Q 025154          160 LIAPTL  165 (257)
Q Consensus       160 l~spNf  165 (257)
                      .++|=|
T Consensus       153 ~~~PEr  158 (473)
T PLN02353        153 LSNPEF  158 (473)
T ss_pred             EECCCc
Confidence            666655

>PLN02858 fructose-bisphosphate aldolase

Probab=96.48  E-value=0.041  Score=60.52  Aligned_cols=119  Identities=13%  Similarity=0.057  Sum_probs=76.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +.||+++| .|.||..+++.+. ..++++. ++|+..  .....+.    ..|....+++.++.+      .+|+||-.-
T Consensus       324 ~~~IGfIG-lG~MG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~V  388 (1378)
T PLN02858        324 VKRIGFIG-LGAMGFGMASHLL-KSNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIMV  388 (1378)
T ss_pred             CCeEEEEC-chHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEec
Confidence            57899999 6999999999887 4577765 566431  1222232    234555778888885      789888654


Q ss_pred             -ChHhHHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhh--cCceEEEccCchHHHH
Q 025154          115 -DASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCLIAPTLSIGSI  170 (257)
Q Consensus       115 -~p~~~~~~~~------~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~--~gipvl~spNfSlGvn  170 (257)
                       .|+.+.+.+.      ..+..|. +|+-++..+++..+++.+.+++  .|+..+-+| .|=|..
T Consensus       389 ~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP-VsGg~~  451 (1378)
T PLN02858        389 ANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP-VSGGVK  451 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc-CCCChh
Confidence             3565555441      1223444 4455555667777788777777  777777766 444443

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.47  E-value=0.031  Score=54.86  Aligned_cols=123  Identities=11%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-CCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~-~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      +|+++| .|.||+.+++.+.. .+++|+ ++|+..  .....+..... ..++..+++++++.+.+   .++|+||-.-.
T Consensus         1 ~IG~IG-LG~MG~~mA~nL~~-~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~   72 (467)
T TIGR00873         1 DIGVIG-LAVMGSNLALNMAD-HGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK   72 (467)
T ss_pred             CEEEEe-eHHHHHHHHHHHHh-cCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence            489999 69999999999875 577765 566531  11222221100 01255567887776421   25898776654


Q ss_pred             h-HhHHHHH---HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          116 A-STVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       116 p-~~~~~~~---~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      + +.+.+.+   ..+++.|.-+|-++|....+..+..++ .++.|+. ++..-.|=|.
T Consensus        73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~-fvdapVsGG~  128 (467)
T TIGR00873        73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGIL-FVGSGVSGGE  128 (467)
T ss_pred             CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCE-EEcCCCCCCH
Confidence            4 3344433   334455665665666554544444444 4444555 4444444454

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.47  E-value=0.021  Score=52.35  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=43.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh-------hcCCCC--------CCeeeecCHHHHHh
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV-------CDMEQP--------LEIPVMSDLTMVLG   99 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~-------~g~~~~--------~gv~v~~dl~~~l~   99 (257)
                      +.||+|+|+ |.||..++..+.. .+++++. +|...  .....+       .+...+        ..+..++|+++++.
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~-~g~~V~~-~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   78 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFAR-KGLQVVL-IDVME--GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS   78 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCH--HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc
Confidence            358999995 9999999998874 5777664 56421  011100       010000        01345667777764


Q ss_pred             ccccCCCccEEEEcCChH
Q 025154          100 SISQSKARAVVIDFTDAS  117 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~p~  117 (257)
                            ++|+||....++
T Consensus        79 ------~aDlVi~av~~~   90 (311)
T PRK06130         79 ------GADLVIEAVPEK   90 (311)
T ss_pred             ------cCCEEEEeccCc
Confidence                  689988776554

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.45  E-value=0.015  Score=56.73  Aligned_cols=118  Identities=15%  Similarity=0.204  Sum_probs=76.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCC-----------CeeeecCHHHHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-----------EIPVMSDLTMVL   98 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~-----------gv~v~~dl~~~l   98 (257)
                      ..||+|.| .|.+|+.+++.+. ..+.+||++.|+.     ..|-|..++.......           +.. +.+.++++
T Consensus       232 g~rVaIqG-fGnVG~~~A~~L~-~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~  308 (445)
T PRK09414        232 GKRVVVSG-SGNVAIYAIEKAQ-QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPW  308 (445)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccc
Confidence            47999999 5999999999876 5789999998842     3366665443211000           111 12445555


Q ss_pred             hccccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCceEEEccCch
Q 025154           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus        99 ~~~~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT-G-~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      .     .++||+|-++..... .+++....+++..+|++-. + .+++..+.|   .++   .|++.|-+.
T Consensus       309 ~-----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L---~~r---GI~~vPD~l  368 (445)
T PRK09414        309 S-----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF---LEA---GVLFAPGKA  368 (445)
T ss_pred             c-----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH---HHC---CcEEECchh
Confidence            4     489999998865444 5677776677999999876 2 455443333   233   466667654

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=96.43  E-value=0.034  Score=45.94  Aligned_cols=102  Identities=16%  Similarity=0.152  Sum_probs=74.5

Q ss_pred             ceEEEEcCCCh---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      -+|+|+|++-+   -+-.+.+.+. +.|+++..+ .+...|   .++      +|-++|.++.++-+      +.|+|.-
T Consensus        17 K~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPV-NP~~~~---~ei------LG~k~y~sL~dIpe------~IDiVdv   79 (140)
T COG1832          17 KTIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPV-NPKLAG---EEI------LGEKVYPSLADIPE------PIDIVDV   79 (140)
T ss_pred             ceEEEEecCCCCCccHHHHHHHHH-HCCCEEEee-Ccccch---HHh------cCchhhhcHHhCCC------CCcEEEE
Confidence            47999999864   5556777655 678998864 342222   344      35678999999874      8999988


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCc
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gi  157 (257)
                      |-.|+.+.+.++.+++.+..+|=.--|...++   ..+.++++|.
T Consensus        80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~e---a~~~~~~aG~  121 (140)
T COG1832          80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEE---AAEKARDAGL  121 (140)
T ss_pred             ecChhhhHHHHHHHHhhCCCeEEEecCcCCHH---HHHHHHHhCc
Confidence            99999999999999999999887666765544   3444555554

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=96.42  E-value=0.023  Score=52.46  Aligned_cols=33  Identities=27%  Similarity=0.209  Sum_probs=28.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      ||||.|.|++|-+|+.+++.+.+..+.++.+..
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~   33 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD   33 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence            679999999999999999998866678888754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.36  E-value=0.02  Score=52.53  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=63.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .-+|+|+|+ |+||+.+++.+.. -++++. ++++..  .......    ..+...  ++++++.+.      ++|+||.
T Consensus       151 gk~v~IiG~-G~iG~avA~~L~~-~G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDiVin  215 (287)
T TIGR02853       151 GSNVMVLGF-GRTGMTIARTFSA-LGARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKVA------EIDIVIN  215 (287)
T ss_pred             CCEEEEEcC-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHhc------cCCEEEE
Confidence            358999995 9999999998875 467755 555431  1111111    112221  346677774      7999997


Q ss_pred             cCChHhHH-HHHHHHHHcCCCeE-EeC-CCCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          113 FTDASTVY-DNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       113 FT~p~~~~-~~~~~a~~~Gi~vV-iGT-TG~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      .+ |.... ......++.+.-+| +++ +|-++     + ++|++.|+..+++||.==
T Consensus       216 t~-P~~ii~~~~l~~~k~~aliIDlas~Pg~td-----f-~~Ak~~G~~a~~~~glPg  266 (287)
T TIGR02853       216 TI-PALVLTADVLSKLPKHAVIIDLASKPGGTD-----F-EYAKKRGIKALLAPGLPG  266 (287)
T ss_pred             CC-ChHHhCHHHHhcCCCCeEEEEeCcCCCCCC-----H-HHHHHCCCEEEEeCCCCc
Confidence            55 44332 22222233332222 222 34432     3 567888999999886643

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.35  E-value=0.053  Score=47.36  Aligned_cols=96  Identities=16%  Similarity=0.101  Sum_probs=53.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc----CCCCCCe--ee-ecCHHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQPLEI--PV-MSDLTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g----~~~~~gv--~v-~~dl~~~l~~~~~~~~~D  108 (257)
                      |||+|+|++|.||+.+++.+.+ .+.++.. +++..  .....+..    .....++  .+ ..+..+.+.      .+|
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~v-~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~------~aD   70 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAK-AGNKIII-GSRDL--EKAEEAAAKALEELGHGGSDIKVTGADNAEAAK------RAD   70 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh-CCCEEEE-EEcCH--HHHHHHHHHHHhhccccCCCceEEEeChHHHHh------cCC
Confidence            6899998569999999998875 4677653 45421  11111110    0001121  12 235556664      789


Q ss_pred             EEEEcCChHhHHHHHHHHHH--cCCCeEEe-CCCCCH
Q 025154          109 VVIDFTDASTVYDNVKQATA--FGMRSVVY-VPHIQL  142 (257)
Q Consensus       109 VvIDFT~p~~~~~~~~~a~~--~Gi~vViG-TTG~s~  142 (257)
                      +||-...+....+.+.....  .+ .+|+- +-|++.
T Consensus        71 vVilavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~  106 (219)
T TIGR01915        71 VVILAVPWDHVLKTLESLRDELSG-KLVISPVVPLAS  106 (219)
T ss_pred             EEEEECCHHHHHHHHHHHHHhccC-CEEEEeccCcee
Confidence            99977777767666554432  24 44544 446653

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.35  E-value=0.05  Score=49.14  Aligned_cols=92  Identities=20%  Similarity=0.225  Sum_probs=59.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhh-----hhcCCCCCCeee-----
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGM-----VCDMEQPLEIPV-----   90 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~g~-----~~g~~~~~gv~v-----   90 (257)
                      +|+|+|+ |.+|+-.+++++. .++.=.-.+|..                ..|+.--+     +..+.....|..     
T Consensus        32 ~V~VvGi-GGVGSw~veALaR-sGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~  109 (263)
T COG1179          32 HVCVVGI-GGVGSWAVEALAR-SGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI  109 (263)
T ss_pred             cEEEEec-CchhHHHHHHHHH-cCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence            7999996 9999999998874 465544556621                11221111     111111122322     


Q ss_pred             -ecCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEE
Q 025154           91 -MSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus        91 -~~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vVi  135 (257)
                       -+++++++.     .++|-|||... -..-.+++.+|.++++|+|.
T Consensus       110 t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs  151 (263)
T COG1179         110 TEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS  151 (263)
T ss_pred             CHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEe
Confidence             246677776     48999999974 45557889999999999884

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.27  E-value=0.044  Score=51.49  Aligned_cols=93  Identities=13%  Similarity=0.156  Sum_probs=58.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      .+|+|+| +|.||+.+++.+. +.+++++....+..  +.. ..+   ...|+.+. +++++++      .+|+|+-...
T Consensus        18 ktIgIIG-~GsmG~AlA~~L~-~sG~~Vvv~~r~~~--~s~-~~A---~~~G~~~~-s~~eaa~------~ADVVvLaVP   82 (330)
T PRK05479         18 KKVAIIG-YGSQGHAHALNLR-DSGVDVVVGLREGS--KSW-KKA---EADGFEVL-TVAEAAK------WADVIMILLP   82 (330)
T ss_pred             CEEEEEe-eHHHHHHHHHHHH-HCCCEEEEEECCch--hhH-HHH---HHCCCeeC-CHHHHHh------cCCEEEEcCC
Confidence            5899999 5999999999886 56788775544321  111 111   12355444 7888885      7999997777


Q ss_pred             hHhHHHHH-HHHH---HcCCCeEEeCCCCCHHH
Q 025154          116 ASTVYDNV-KQAT---AFGMRSVVYVPHIQLET  144 (257)
Q Consensus       116 p~~~~~~~-~~a~---~~Gi~vViGTTG~s~e~  144 (257)
                      |....+.+ ....   +.|. +|+=..|++-..
T Consensus        83 d~~~~~V~~~~I~~~Lk~g~-iL~~a~G~~i~~  114 (330)
T PRK05479         83 DEVQAEVYEEEIEPNLKEGA-ALAFAHGFNIHF  114 (330)
T ss_pred             HHHHHHHHHHHHHhcCCCCC-EEEECCCCChhh
Confidence            66665554 2222   2233 455567887644

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=96.26  E-value=0.1  Score=51.05  Aligned_cols=119  Identities=12%  Similarity=0.127  Sum_probs=70.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCC---cch----------------hhhhc-CCC-CCCeeee
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDI----------------GMVCD-MEQ-PLEIPVM   91 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d~----------------g~~~g-~~~-~~gv~v~   91 (257)
                      .+.||+|.|+||-+|+..++.+.+.++ +++++........   ..+                .++-. ... ..+..++
T Consensus        56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl  135 (454)
T PLN02696         56 GPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEII  135 (454)
T ss_pred             CccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEE
Confidence            357999999999999999998887655 8898876532110   000                00000 000 0012232


Q ss_pred             ---cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHH----HHHHHHhhhcCceEE
Q 025154           92 ---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKASMGCL  160 (257)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~----~~L~~~a~~~gipvl  160 (257)
                         +++.++.+.    .++|+||-.-.--+-+.-...|+++|+.|...    +.|-+    +.|.++++++|+.++
T Consensus       136 ~G~egl~~la~~----~evDiVV~AIvG~aGL~pTl~AIkaGK~VALA----NKESLV~aG~lI~~~ak~~~~~Il  203 (454)
T PLN02696        136 PGEEGIVEVARH----PEAVTVVTGIVGCAGLKPTVAAIEAGKDIALA----NKETLIAGGPFVLPLAKKHGVKIL  203 (454)
T ss_pred             ECHHHHHHHHcC----CCCCEEEEeCccccchHHHHHHHHCCCcEEEe----cHHHHHhhHHHHHHHHHHcCCeEe
Confidence               244455542    56898887665544555558889999998873    33322    245666666665554

>PRK06091 membrane protein FdrA; Validated

Probab=96.23  E-value=0.025  Score=56.42  Aligned_cols=75  Identities=8%  Similarity=0.122  Sum_probs=63.8

Q ss_pred             CeeeecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154           87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus        87 gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      .++.+.++.++++++   ..+|++|-+..+..+.+.++.|++.|+++||=+.||..+..++|.++|+++|+ .++.||-
T Consensus       101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~Gl-rvmGPNC  175 (555)
T PRK06091        101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGL-LVMGPDC  175 (555)
T ss_pred             CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCC-EEECCCC
Confidence            456677888877542   45799998999999999999999999999999999998888899999999886 5579998

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=96.23  E-value=0.062  Score=48.66  Aligned_cols=127  Identities=13%  Similarity=0.161  Sum_probs=79.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-----ecCHHHHHhccccCCCcc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-----MSDLTMVLGSISQSKARA  108 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-----~~dl~~~l~~~~~~~~~D  108 (257)
                      ++++|.|.|.| .=++.+++.+...+...++......  |.+..+-     .....+     ..-+.+.+.+    .++|
T Consensus         1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~--g~~l~~~-----~~~~~~~G~l~~e~l~~~l~e----~~i~   68 (257)
T COG2099           1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGY--GAKLAEQ-----IGPVRVGGFLGAEGLAAFLRE----EGID   68 (257)
T ss_pred             CCceEEEEecc-HHHHHHHHHhhccCccEEEEEcccc--cccchhc-----cCCeeecCcCCHHHHHHHHHH----cCCC
Confidence            46899999974 7789999998877755444333211  2221110     111111     1233444544    7899


Q ss_pred             EEEEcCChHhH---HHHHHHHHHcCCCeE-EeCCCCCH--------HHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154          109 VVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (257)
Q Consensus       109 VvIDFT~p~~~---~~~~~~a~~~Gi~vV-iGTTG~s~--------e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a  176 (257)
                      .+||.|||-+.   ...++.|-+.|+|.+ ..=++|..        ++.+++-+++++.+-.||.    .+|.+=+..|.
T Consensus        69 llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVfl----t~G~~~l~~f~  144 (257)
T COG2099          69 LLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFL----TTGRQNLAHFV  144 (257)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEE----ecCccchHHHh
Confidence            99999999766   456688899999988 44555543        3455666666766556774    67876555554

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.23  E-value=0.021  Score=52.57  Aligned_cols=79  Identities=23%  Similarity=0.294  Sum_probs=55.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT-  114 (257)
                      |||.|.|++|.+|+.+.+.+.  ++.++++.-.+.               .++.-.+.+.+++.+    .+||+||... 
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA   59 (281)
T COG1091           1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA   59 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence            569999999999999999765  778887643221               223334456677765    5799999852 


Q ss_pred             ---------ChH--------hHHHHHHHHHHcCCCeEE
Q 025154          115 ---------DAS--------TVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       115 ---------~p~--------~~~~~~~~a~~~Gi~vVi  135 (257)
                               .|+        .....++.|.+.|.++|=
T Consensus        60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVh   97 (281)
T COG1091          60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVH   97 (281)
T ss_pred             ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEE
Confidence                     233        234567888899999884

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.23  E-value=0.034  Score=50.29  Aligned_cols=100  Identities=15%  Similarity=0.195  Sum_probs=54.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhhcCC--C-------CCCeeeecCHHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVCDME--Q-------PLEIPVMSDLTM   96 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---------~g~~~g~~--~-------~~gv~v~~dl~~   96 (257)
                      +.||+|+|+ |.||..++..++.. +++++. +|.+..-.+         ...+...+  .       ..++.+++|+++
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~~-~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   79 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVM-VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD   79 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            458999995 99999999988754 777764 563210000         00111000  0       013455677765


Q ss_pred             HHhccccCCCccEEEEcCChH-----hHHHHHHHHHHcCCCeEEeCCCCCHHH
Q 025154           97 VLGSISQSKARAVVIDFTDAS-----TVYDNVKQATAFGMRSVVYVPHIQLET  144 (257)
Q Consensus        97 ~l~~~~~~~~~DVvIDFT~p~-----~~~~~~~~a~~~Gi~vViGTTG~s~e~  144 (257)
                       +.      ++|+||....++     .++.-+..++..+..+++-|.|++..+
T Consensus        80 -~~------~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~  125 (282)
T PRK05808         80 -LK------DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE  125 (282)
T ss_pred             -hc------cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence             43      789999876532     222333333334444545555766543

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=96.23  E-value=0.012  Score=55.28  Aligned_cols=97  Identities=25%  Similarity=0.212  Sum_probs=59.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhcCCC------CC-Ceeee--c
Q 025154           37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCDMEQ------PL-EIPVM--S   92 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~~~g~~~------~~-gv~v~--~   92 (257)
                      ||||.| .||+||.+.+++.+.  +++++|++-|..             -.|+--+++.-.++      .. .+.++  .
T Consensus         1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~   79 (327)
T TIGR01534         1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER   79 (327)
T ss_pred             CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence            799999 599999999998776  589999987721             01111111100000      01 12232  1


Q ss_pred             CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      +++++-=   ++.++|+|++.|-.....+.+..+++.|...|+=+
T Consensus        80 dp~~~~w---~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS  121 (327)
T TIGR01534        80 DPSDLPW---KALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS  121 (327)
T ss_pred             CcccCch---hhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence            4443211   01368999988888888888888999997666543

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.22  E-value=0.04  Score=48.35  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=26.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..||+|+|+ |.||..+++.+.. .++.=+.++|.
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~-~Gvg~i~lvD~   60 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALAR-SGVGNLKLVDF   60 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            458999996 9999999999875 46665556774

>PRK08328 hypothetical protein; Provisional

Probab=96.19  E-value=0.049  Score=48.34  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=25.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .-||+|+|+ |..|..+++.+.. .++.=..++|.
T Consensus        27 ~~~VlIiG~-GGlGs~ia~~La~-~Gvg~i~lvD~   59 (231)
T PRK08328         27 KAKVAVVGV-GGLGSPVAYYLAA-AGVGRILLIDE   59 (231)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence            358999996 9999999998875 46655556773

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.18  E-value=0.024  Score=53.96  Aligned_cols=119  Identities=9%  Similarity=0.038  Sum_probs=69.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEE---EEEecCCCCcchhhhhcCCCCCCeeeecCHHH--HHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv---g~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~--~l~~~~~~~~~DVv  110 (257)
                      +||||+||||-.|+.+++.+.+++++.+.   ..-.....|+.. .+.+    ....+. ++++  .+      .++|++
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v~-~~~~~~~~------~~vDiv   68 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTLQ-DAFDIDAL------KALDII   68 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceEE-cCcccccc------cCCCEE
Confidence            48999999999999999988877787633   222222223221 1111    112222 2211  34      268988


Q ss_pred             EEcCChHhHHHHHHHHHHcCCC-eEEeCCC--------------CCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154          111 IDFTDASTVYDNVKQATAFGMR-SVVYVPH--------------IQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~-vViGTTG--------------~s~e~~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      +-+...+.+.++...+.++|.+ +||=-++              .+++   .|... .+.|+.-+..||=|.=.-
T Consensus        69 ffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~---~i~~~-~~~gi~~ianPNCst~~l  139 (366)
T TIGR01745        69 ITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQD---VITDG-LNNGIRTFVGGNCTVSLM  139 (366)
T ss_pred             EEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHH---HHHhH-HhCCcCeEECcCHHHHHH
Confidence            7334556667888889999975 4554442              3444   34332 244453377899776543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.18  E-value=0.0099  Score=55.33  Aligned_cols=92  Identities=12%  Similarity=0.082  Sum_probs=62.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      -+|+|+|+ |.+|+.+++.+....+++.+.++++..  ..+.+++.. ....+  +..++|+++++.      ++|+||-
T Consensus       128 ~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~  198 (325)
T PRK08618        128 KTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT  198 (325)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence            48999995 999999998887677899999998641  112222210 01123  455889999885      7999997


Q ss_pred             cCChHhHHHHHHHHHHcCCCeE-EeCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSV-VYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vV-iGTT  138 (257)
                      .|. ....-.- .+++.|++|. ||+.
T Consensus       199 aT~-s~~p~i~-~~l~~G~hV~~iGs~  223 (325)
T PRK08618        199 VTN-AKTPVFS-EKLKKGVHINAVGSF  223 (325)
T ss_pred             ccC-CCCcchH-HhcCCCcEEEecCCC
Confidence            763 3343334 7789999985 5653

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.13  E-value=0.12  Score=50.74  Aligned_cols=137  Identities=21%  Similarity=0.173  Sum_probs=77.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      -||+|+| .|+.|...++.+. ..+.++++ .|...  .....+.    +.|+.+.  .+..+.+.      .+|+||.-
T Consensus        13 ~~v~V~G-~G~sG~aa~~~L~-~~G~~v~~-~D~~~--~~~~~l~----~~g~~~~~~~~~~~~l~------~~D~VV~S   77 (488)
T PRK03369         13 APVLVAG-AGVTGRAVLAALT-RFGARPTV-CDDDP--DALRPHA----ERGVATVSTSDAVQQIA------DYALVVTS   77 (488)
T ss_pred             CeEEEEc-CCHHHHHHHHHHH-HCCCEEEE-EcCCH--HHHHHHH----hCCCEEEcCcchHhHhh------cCCEEEEC
Confidence            4899999 5999999998665 56788775 77431  1111111    2355443  22334443      68988876


Q ss_pred             C-ChHhHHHHHHHHHHcCCCe---------------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          114 T-DASTVYDNVKQATAFGMRS---------------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       114 T-~p~~~~~~~~~a~~~Gi~v---------------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      + .|.. .+.++.|.++|+|+                     +||-||-+-  --...|..+-++.|.+.....|  +|+
T Consensus        78 pGi~~~-~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~  154 (488)
T PRK03369         78 PGFRPT-APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGS  154 (488)
T ss_pred             CCCCCC-CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--Cch
Confidence            5 2322 23455555544333                     345554321  1223456666666667777778  677


Q ss_pred             HHHHHHHHHhcCCCCCeEEEeccCCC
Q 025154          170 ILLQQAAISASFHYKNVEIVESRPNA  195 (257)
Q Consensus       170 nll~~~a~~l~~~~~DiEIiE~HH~~  195 (257)
                      .++..+    . ...|+-++|+-..+
T Consensus       155 p~~~~~----~-~~~~~~VlE~ss~q  175 (488)
T PRK03369        155 PVLDVL----D-EPAELLAVELSSFQ  175 (488)
T ss_pred             HHHHhc----c-CCCCEEEEECChHH
Confidence            764422    2 35678888864433

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.03  E-value=0.062  Score=47.39  Aligned_cols=123  Identities=18%  Similarity=0.218  Sum_probs=60.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..||+|+|+ |..|..+++.+.. .++.-..++|..... .+... ++...+..|-+-.+-+.+.+.+    ..+++=|+
T Consensus        21 ~~~VlivG~-GglGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~----~np~~~i~   94 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAA-AGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRA----INPDVEIE   94 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHH----hCCCCEEE
Confidence            458999996 9999999999874 577666677743110 01110 0000000111101111122221    24554444


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      .-.-....+++...+ .+..+|+.++. +.+....|.++|.+.++|++.+...
T Consensus        95 ~~~~~i~~~~~~~~~-~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~  145 (228)
T cd00757          95 AYNERLDAENAEELI-AGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVL  145 (228)
T ss_pred             EecceeCHHHHHHHH-hCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEec
Confidence            322111122222222 34667776665 3344556777777777777766443

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07411 hypothetical protein; Validated

Probab=96.02  E-value=0.053  Score=51.93  Aligned_cols=98  Identities=17%  Similarity=0.225  Sum_probs=60.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh---------hhhcCCCCCCeeeec-
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG---------MVCDMEQPLEIPVMS-   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~g---------~~~g~~~~~gv~v~~-   92 (257)
                      ..||+|+|+ |.+|..+++.+. ..++.=..++|..     ..+       .|+|         .+..+.....+..+. 
T Consensus        38 ~~~VlivG~-GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~  115 (390)
T PRK07411         38 AASVLCIGT-GGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET  115 (390)
T ss_pred             cCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence            458999996 999999999887 4577766777732     111       1111         111111111222221 


Q ss_pred             -----CHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC-CC
Q 025154           93 -----DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP-HI  140 (257)
Q Consensus        93 -----dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT-G~  140 (257)
                           +..+.+.      ++|+|||.+. ++.-.-.-..|.+.++|+|.|.. ||
T Consensus       116 ~~~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~  164 (390)
T PRK07411        116 RLSSENALDILA------PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF  164 (390)
T ss_pred             ccCHHhHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence                 2334553      7999999985 44445566888999999998754 44

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.01  E-value=0.068  Score=51.00  Aligned_cols=35  Identities=26%  Similarity=0.221  Sum_probs=28.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ...||+|+|.+|.||+.+++.+.+..+.++.+ +|+
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~   37 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDP   37 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcC
Confidence            34699999966999999999998655778765 664

>PRK08605 D-lactate dehydrogenase; Validated

Probab=95.96  E-value=0.032  Score=52.18  Aligned_cols=102  Identities=18%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -++|+|+| .|+||+.+++.+...-++++.+ +|+.. ....        ...+...+++++++.      .+|+|+-..
T Consensus       146 g~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~-~d~~~-~~~~--------~~~~~~~~~l~ell~------~aDvIvl~l  208 (332)
T PRK08605        146 DLKVAVIG-TGRIGLAVAKIFAKGYGSDVVA-YDPFP-NAKA--------ATYVDYKDTIEEAVE------GADIVTLHM  208 (332)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCEEEE-ECCCc-cHhH--------HhhccccCCHHHHHH------hCCEEEEeC
Confidence            35899999 5999999999885445777764 66431 1111        112334568999985      799988654


Q ss_pred             ChHhHHHHH-----HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154          115 DASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (257)
Q Consensus       115 ~p~~~~~~~-----~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~  154 (257)
                      .......++     ...++.|.-+|--++|.-.++. .|.++.++
T Consensus       209 P~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~-aL~~aL~~  252 (332)
T PRK08605        209 PATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTK-ALLDALDN  252 (332)
T ss_pred             CCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHH-HHHHHHHh
Confidence            211111111     2234555544444446544333 34444444

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.96  E-value=0.098  Score=46.73  Aligned_cols=116  Identities=13%  Similarity=0.083  Sum_probs=60.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCH---HHHHhccccCCC-ccEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL---TMVLGSISQSKA-RAVVI  111 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl---~~~l~~~~~~~~-~DVvI  111 (257)
                      +|.|+|++|.+|+.+++.+.+ .++++.+...+......    .+.   ..+.. +.|.   .+++.....-.. +|.++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~~~~----~~~---~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~   72 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSSSAG----PNE---KHVKFDWLDEDTWDNPFSSDDGMEPEISAVY   72 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCccccC----CCC---ccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence            589999999999999998875 57887766543210000    010   01111 2333   344410000013 78776


Q ss_pred             EcCC-----hHhHHHHHHHHHHcCCCeEEeCC--CC--CHHHHHHHHHHhhhc-CceEE
Q 025154          112 DFTD-----ASTVYDNVKQATAFGMRSVVYVP--HI--QLETVSALSAFCDKA-SMGCL  160 (257)
Q Consensus       112 DFT~-----p~~~~~~~~~a~~~Gi~vViGTT--G~--s~e~~~~L~~~a~~~-gipvl  160 (257)
                      ..+.     .+.....+..|.+.|+.-|+-++  +-  .......++++.++. |++..
T Consensus        73 ~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~t  131 (285)
T TIGR03649        73 LVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYT  131 (285)
T ss_pred             EeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEE
Confidence            5543     13455677888899976444332  21  111222344555553 66654

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PLN00016 RNA-binding protein; Provisional

Probab=95.94  E-value=0.067  Score=50.28  Aligned_cols=96  Identities=19%  Similarity=0.160  Sum_probs=58.5

Q ss_pred             CCCceEEEE----cCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCCCCCCee-eecCHHH---HHh
Q 025154           33 QSNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIP-VMSDLTM---VLG   99 (257)
Q Consensus        33 ~~~ikV~V~----Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~-----g~~~g~~~~~gv~-v~~dl~~---~l~   99 (257)
                      ..++||.|+    |++|.+|+.+++.+.+ .++++.++..........     ..+... ...++. +..|+.+   ++.
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~~~~  127 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSEL-SSAGVKTVWGDPADVKSKVA  127 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHh-hhcCceEEEecHHHHHhhhc
Confidence            445789999    9999999999998875 478888766432110000     000000 012333 2345544   332


Q ss_pred             ccccCCCccEEEEcCC--hHhHHHHHHHHHHcCCC-eE
Q 025154          100 SISQSKARAVVIDFTD--ASTVYDNVKQATAFGMR-SV  134 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~--p~~~~~~~~~a~~~Gi~-vV  134 (257)
                          ...+|+||++..  .+.....+.+|.+.|+. +|
T Consensus       128 ----~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V  161 (378)
T PLN00016        128 ----GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL  161 (378)
T ss_pred             ----cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence                247999999863  44456777888888874 55

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.90  E-value=0.041  Score=50.89  Aligned_cols=80  Identities=24%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--eecCHHHHHhccccCCCccEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ...||+|+|+ |.||+.+++.+.. .+..-+.++++..  ..+.+++.   .++..  .++++.+.+.      .+|+||
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVi  243 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTY--ERAEELAK---ELGGNAVPLDELLELLN------EADVVI  243 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHHH---HcCCeEEeHHHHHHHHh------cCCEEE
Confidence            3579999996 9999999998875 4555566677531  11222221   22222  2345556653      689988


Q ss_pred             EcCChHhHHHHHHHH
Q 025154          112 DFTDASTVYDNVKQA  126 (257)
Q Consensus       112 DFT~p~~~~~~~~~a  126 (257)
                      ..|......+.+..+
T Consensus       244 ~at~~~~~~~~~~~~  258 (311)
T cd05213         244 SATGAPHYAKIVERA  258 (311)
T ss_pred             ECCCCCchHHHHHHH
Confidence            887544443334433

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN00106 malate dehydrogenase

Probab=95.89  E-value=0.045  Score=51.27  Aligned_cols=50  Identities=18%  Similarity=0.223  Sum_probs=35.0

Q ss_pred             ccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           20 KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        20 ~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .++|.-.|-..-...+.||+|+|++|++|..++-.+....-..-.-.+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di   52 (323)
T PLN00106          3 EASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI   52 (323)
T ss_pred             chhhhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            34455557655555667999999889999999998875544433335664

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.83  E-value=0.074  Score=50.65  Aligned_cols=96  Identities=20%  Similarity=0.307  Sum_probs=59.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh---------hhhcCCCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG---------MVCDMEQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~g---------~~~g~~~~~gv~v~--   91 (257)
                      ..||.|+|+ |.+|..+++.+.. .++.=+.++|..     ...       .|+|         .+..+.....+..+  
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~-~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~  118 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLAS-AGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE  118 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence            358999996 9999999999874 566555567632     111       1111         01111111222222  


Q ss_pred             ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                          .+.++++.      ++|+|||.+. .+.-.-.-..|.++++|+|.|..
T Consensus       119 ~i~~~~~~~~~~------~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~  164 (370)
T PRK05600        119 RLTAENAVELLN------GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV  164 (370)
T ss_pred             ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence                23455664      7999999985 55555566889999999998754

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.83  E-value=0.072  Score=50.36  Aligned_cols=95  Identities=21%  Similarity=0.270  Sum_probs=58.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~~~g~~~~~gv~v~--   91 (257)
                      ..||+|+|+ |..|..+++.+. ..++.=..++|...     ..       .|+|         .+..+.....+..+  
T Consensus        28 ~~~VlivG~-GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~  105 (355)
T PRK05597         28 DAKVAVIGA-GGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR  105 (355)
T ss_pred             CCeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence            358999996 999999999887 56776667777321     11       1111         01111111122221  


Q ss_pred             ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeC
Q 025154           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                          ++..+++.      ++|+|||.+. ++.-.-.-..|.++++|+|.|-
T Consensus       106 ~i~~~~~~~~~~------~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~  150 (355)
T PRK05597        106 RLTWSNALDELR------DADVILDGSDNFDTRHLASWAAARLGIPHVWAS  150 (355)
T ss_pred             ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                12334553      7999999984 4444556688999999999764

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=95.80  E-value=0.052  Score=51.44  Aligned_cols=102  Identities=11%  Similarity=0.073  Sum_probs=63.7

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .+++|||+| .|.||+..++.+. +.|..|.. .|+..    -.+.+   ..+|..-++++.++.+     ..+|||+-.
T Consensus        51 ~tl~IaIIG-fGnmGqflAetli-~aGh~li~-hsRsd----yssaa---~~yg~~~ft~lhdlce-----rhpDvvLlc  115 (480)
T KOG2380|consen   51 ATLVIAIIG-FGNMGQFLAETLI-DAGHGLIC-HSRSD----YSSAA---EKYGSAKFTLLHDLCE-----RHPDVVLLC  115 (480)
T ss_pred             cceEEEEEe-cCcHHHHHHHHHH-hcCceeEe-cCcch----hHHHH---HHhcccccccHHHHHh-----cCCCEEEEE
Confidence            457999999 5999999999887 45666653 33321    12222   2567777888888887     489999988


Q ss_pred             CChHhHHHHHH---HH-HHcCCCeEEeCCCCCHHHHHHHHHH
Q 025154          114 TDASTVYDNVK---QA-TAFGMRSVVYVPHIQLETVSALSAF  151 (257)
Q Consensus       114 T~p~~~~~~~~---~a-~~~Gi~vViGTTG~s~e~~~~L~~~  151 (257)
                      |........++   .. ++.|. +|+|.|.-.+-+.+.++++
T Consensus       116 tsilsiekilatypfqrlrrgt-lfvdvlSvKefek~lfekY  156 (480)
T KOG2380|consen  116 TSILSIEKILATYPFQRLRRGT-LFVDVLSVKEFEKELFEKY  156 (480)
T ss_pred             ehhhhHHHHHHhcCchhhccce-eEeeeeecchhHHHHHHHh
Confidence            75544443333   33 34443 4556665544444444443

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.79  E-value=0.076  Score=50.83  Aligned_cols=96  Identities=19%  Similarity=0.305  Sum_probs=59.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh----h-----hhcCCCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG----M-----VCDMEQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~g----~-----~~g~~~~~gv~v~--   91 (257)
                      ..||.|+|+ |..|..+++.+. ..++.=+.++|..     ..+       .|+|    +     +..+.....+..+  
T Consensus        42 ~~~VlviG~-GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         42 NARVLVIGA-GGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             cCCEEEECC-CHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            358999996 999999999887 4566666677732     111       1121    1     1111101122211  


Q ss_pred             ----cCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCC
Q 025154           92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                          ++..+++.      ++|+|||.+ ++..-...-+.|.++++|+|.|..
T Consensus       120 ~i~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~  165 (392)
T PRK07878        120 RLDPSNAVELFS------QYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI  165 (392)
T ss_pred             cCChhHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                12344553      799999998 455556667889999999998754

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=95.75  E-value=0.047  Score=53.50  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhc----CCcEEEEEEe
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID   68 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd   68 (257)
                      ..+.||+|.| .||+||.+.+.+.+.    ++++|+++.+
T Consensus       125 ~~~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~  163 (477)
T PRK08289        125 IEPRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVV  163 (477)
T ss_pred             CCCceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence            4477999999 599999999998766    5899999975

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.73  E-value=0.054  Score=48.12  Aligned_cols=79  Identities=20%  Similarity=0.260  Sum_probs=49.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      ||.|+|++|.+|+.+++.+.+ .+.++.++. +..     .         ++.-.+++.++++.    .++|+||++..+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~-r~~-----~---------d~~~~~~~~~~~~~----~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSP-EGRVVVALT-SSQ-----L---------DLTDPEALERLLRA----IRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeC-Ccc-----c---------CCCCHHHHHHHHHh----CCCCEEEECCcc
Confidence            689999999999999998875 578877643 311     0         11112344555653    357999987632


Q ss_pred             ----------H--------hHHHHHHHHHHcCCCeEE
Q 025154          117 ----------S--------TVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       117 ----------~--------~~~~~~~~a~~~Gi~vVi  135 (257)
                                +        .....+..|.+.+..+|.
T Consensus        61 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~   97 (287)
T TIGR01214        61 TDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVH   97 (287)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence                      1        123345566677777763

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.73  E-value=0.037  Score=48.24  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=23.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv   64 (257)
                      |||+|+|++|+||+.+++.+. +.|+.+.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~-~~g~~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILD-DNGLGVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHH-hCCCEEE
Confidence            689999999999999999775 5588764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.72  E-value=0.11  Score=46.93  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC---CCCC--CeeeecCHHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM---EQPL--EIPVMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--g~---~~~~--gv~v~~dl~~~l~~~~~~~~~D  108 (257)
                      |||+|+|+ |.||..++..+.+ .+.++..+ ++.  +.....+.  |.   ..+.  .+...++++++ .      ++|
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~-~g~~V~~~-~r~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~------~~d   68 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQ-AGHDVTLV-ARR--GAHLDALNENGLRLEDGEITVPVLAADDPAEL-G------PQD   68 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEEEE-ECC--hHHHHHHHHcCCcccCCceeecccCCCChhHc-C------CCC
Confidence            58999996 9999999998774 46676543 331  11111111  10   0000  01224455544 3      799


Q ss_pred             EEEEcCChHhHHHHHHHHH---HcCCCeEEeCCCCCH
Q 025154          109 VVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQL  142 (257)
Q Consensus       109 VvIDFT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~  142 (257)
                      ++|-.+.+..+.+.+....   ..+..+|+-..|+..
T Consensus        69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~  105 (304)
T PRK06522         69 LVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH  105 (304)
T ss_pred             EEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence            9998876555554444433   344567776778864

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.076  Score=49.76  Aligned_cols=120  Identities=15%  Similarity=0.146  Sum_probs=75.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-----c-chhhhhcCC---------------CCCCe------e
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----E-DIGMVCDME---------------QPLEI------P   89 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-----~-d~g~~~g~~---------------~~~gv------~   89 (257)
                      -|.|+|| |.+|+-++..+. ..+++=.-++|.....     + ....+...+               .-..+      .
T Consensus        76 yVVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~  153 (430)
T KOG2018|consen   76 YVVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLW  153 (430)
T ss_pred             EEEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhc
Confidence            4889996 999999999887 4688877777732100     0 001111000               00011      1


Q ss_pred             eecCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCCC----------------------CCHHHHH
Q 025154           90 VMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPH----------------------IQLETVS  146 (257)
Q Consensus        90 v~~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTTG----------------------~s~e~~~  146 (257)
                      -.++-++++-     .+||-|||+- +-+.-.+.+.+|..+|++|+..| |                      ++..-..
T Consensus       154 ~~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~-GaaaksDPTrv~v~Dis~t~~DPlsR~vRr  227 (430)
T KOG2018|consen  154 TSSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISST-GAAAKSDPTRVNVADISETEEDPLSRSVRR  227 (430)
T ss_pred             CCCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEecc-CccccCCCceeehhhccccccCcHHHHHHH
Confidence            1245566664     4799999986 56777899999999999987644 3                      1222344


Q ss_pred             HHHHHhhhcCceEEEccC
Q 025154          147 ALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       147 ~L~~~a~~~gipvl~spN  164 (257)
                      +|+..--..||||++|.-
T Consensus       228 rLrk~GI~~GIpVVFS~E  245 (430)
T KOG2018|consen  228 RLRKRGIEGGIPVVFSLE  245 (430)
T ss_pred             HHHHhccccCCceEEecC
Confidence            666666678999997643

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.71  E-value=0.051  Score=49.38  Aligned_cols=101  Identities=14%  Similarity=0.114  Sum_probs=54.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--------hh---cCC-------CCCCeeeecCHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--------VC---DME-------QPLEIPVMSDLT   95 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~--------~~---g~~-------~~~gv~v~~dl~   95 (257)
                      +.||+|+|+ |.||..++..++. .+.++. ++|....- ..+.+        ..   ...       ....+.+++|++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~-~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~   79 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAF-HGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA   79 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence            358999995 9999999988764 467754 45532100 00000        00   000       012455678898


Q ss_pred             HHHhccccCCCccEEEEcCC--hHhHHHH---HHHHHHcCCCeEEeCCCCCHHH
Q 025154           96 MVLGSISQSKARAVVIDFTD--ASTVYDN---VKQATAFGMRSVVYVPHIQLET  144 (257)
Q Consensus        96 ~~l~~~~~~~~~DVvIDFT~--p~~~~~~---~~~a~~~Gi~vViGTTG~s~e~  144 (257)
                      ++++      ++|+||....  .+...+.   +..++..+..+++-|++++..+
T Consensus        80 ~a~~------~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~  127 (287)
T PRK08293         80 EAVK------DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ  127 (287)
T ss_pred             HHhc------CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence            8774      7999997653  2222233   2333333443435555666543

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.71  E-value=0.26  Score=48.13  Aligned_cols=143  Identities=13%  Similarity=0.145  Sum_probs=76.5

Q ss_pred             CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec--CHHHHHhccccCCC
Q 025154           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKA  106 (257)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~  106 (257)
                      ..|.-.+.||.|+| .|+.|+.+++.+. ..+.++ -+.|....  ...++.   .+.|+.++.  +..+.++      +
T Consensus         9 ~~~~~~~~~v~v~G-~G~sG~a~a~~L~-~~G~~V-~~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~~------~   74 (473)
T PRK00141          9 ALPQELSGRVLVAG-AGVSGRGIAAMLS-ELGCDV-VVADDNET--ARHKLI---EVTGVADISTAEASDQLD------S   74 (473)
T ss_pred             hcccccCCeEEEEc-cCHHHHHHHHHHH-HCCCEE-EEECCChH--HHHHHH---HhcCcEEEeCCCchhHhc------C
Confidence            44555667999999 5999999999876 556754 45774321  112221   134666642  2233343      6


Q ss_pred             ccEEEEcCC--hHhHHHHHHHHHHcCCCe---------------------EEeCCCCCH--HHHHHHHHHhhhcCceEEE
Q 025154          107 RAVVIDFTD--ASTVYDNVKQATAFGMRS---------------------VVYVPHIQL--ETVSALSAFCDKASMGCLI  161 (257)
Q Consensus       107 ~DVvIDFT~--p~~~~~~~~~a~~~Gi~v---------------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~  161 (257)
                      +|+|| .|+  |... +.+..|.++|+++                     +||-||-+-  --...|..+-++.|..+..
T Consensus        75 ~d~vV-~Spgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~  152 (473)
T PRK00141         75 FSLVV-TSPGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQA  152 (473)
T ss_pred             CCEEE-eCCCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence            88777 442  2222 3344555555532                     456665321  1123455555555666667


Q ss_pred             ccCchHHHHHHHHHHHHhcCCCCCeEEEecc
Q 025154          162 APTLSIGSILLQQAAISASFHYKNVEIVESR  192 (257)
Q Consensus       162 spNfSlGvnll~~~a~~l~~~~~DiEIiE~H  192 (257)
                      ..|+.+...  ..+.   .....|+-++|+-
T Consensus       153 ~Gnig~p~~--~~l~---~~~~~~~~V~E~s  178 (473)
T PRK00141        153 VGNIGVPVS--AALV---AQPRIDVLVAELS  178 (473)
T ss_pred             eccCChhHH--HHHh---cCCCCCEEEEecC
Confidence            778543332  1111   1234577778853

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.70  E-value=0.038  Score=50.91  Aligned_cols=114  Identities=14%  Similarity=0.176  Sum_probs=68.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..||+|+|+ |++|+.+++.+.. -+.++. ++++..  .......    ..|...  ++++.+.+.      ++|+||.
T Consensus       152 g~kvlViG~-G~iG~~~a~~L~~-~Ga~V~-v~~r~~--~~~~~~~----~~G~~~~~~~~l~~~l~------~aDiVI~  216 (296)
T PRK08306        152 GSNVLVLGF-GRTGMTLARTLKA-LGANVT-VGARKS--AHLARIT----EMGLSPFHLSELAEEVG------KIDIIFN  216 (296)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HcCCeeecHHHHHHHhC------CCCEEEE
Confidence            469999995 9999999998875 467655 455431  1111111    233332  346666664      7999998


Q ss_pred             cCChHhHHHHHHHHHHcCCCeE-EeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSV-VYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vV-iGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      .+.+....+.....++.+.-+| +++. |-++     + +++++.|+.+++.+|..=++
T Consensus       217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd-----~-~~a~~~Gv~~~~~~~lpg~v  269 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTD-----F-EYAEKRGIKALLAPGLPGKV  269 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEEEEEccCCCCcC-----e-eehhhCCeEEEEECCCCccC
Confidence            7654333333333344444333 3332 3332     2 35788899999999988666

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.68  E-value=0.23  Score=51.01  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCee--eecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .||+|+| .|.||..+++.+.... ..+ +-++|+..  .......    +.|+.  ...+++++++      ++|+||.
T Consensus         4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~-V~~~d~~~--~~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVil   69 (735)
T PRK14806          4 GRVVVIG-LGLIGGSFAKALRERGLARE-VVAVDRRA--KSLELAV----SLGVIDRGEEDLAEAVS------GADVIVL   69 (735)
T ss_pred             cEEEEEe-eCHHHHHHHHHHHhcCCCCE-EEEEECCh--hHHHHHH----HCCCCCcccCCHHHHhc------CCCEEEE
Confidence            4899999 5999999999887542 135 44467532  1111111    22332  3456777774      7899998


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHh
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFC  152 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a  152 (257)
                      .+.|....+.+....+.  .-.+|+-.++....-.+.+++..
T Consensus        70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~  111 (735)
T PRK14806         70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF  111 (735)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence            88777666666554432  22356545555544455565553

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=95.68  E-value=0.053  Score=48.79  Aligned_cols=119  Identities=18%  Similarity=0.235  Sum_probs=74.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCC-------------CeeeecCHHHH
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-------------EIPVMSDLTMV   97 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~-------------gv~v~~dl~~~   97 (257)
                      .||+|.|. |++|+..++.+.+ .+..++++.|+.     ..|.|..++.......             +...+++-+++
T Consensus        33 ~~v~IqGf-G~VG~~~a~~l~~-~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i  110 (244)
T PF00208_consen   33 KRVAIQGF-GNVGSHAARFLAE-LGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEI  110 (244)
T ss_dssp             CEEEEEES-SHHHHHHHHHHHH-TTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHG
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-cCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccc
Confidence            69999995 9999999998875 499999997742     2355655544210011             11222222367


Q ss_pred             HhccccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      +.     .++||+|=+..+... .+++...++.|..+|++-.  .++++..+.|    ++.  +|++.|.|..
T Consensus       111 l~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L----~~r--GI~viPD~~a  172 (244)
T PF00208_consen  111 LS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEIL----RER--GILVIPDFLA  172 (244)
T ss_dssp             GT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHH----HHT--T-EEE-HHHH
T ss_pred             cc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHH----HHC--CCEEEcchhh
Confidence            76     489999988765554 5666657788999999876  3566544323    333  5677777653

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.68  E-value=0.036  Score=47.32  Aligned_cols=98  Identities=16%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchhh----hhcCC---------CCCCeeeecCHHHHH
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIGM----VCDME---------QPLEIPVMSDLTMVL   98 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-----~d~g~----~~g~~---------~~~gv~v~~dl~~~l   98 (257)
                      ||+|+|+ |.||+.++..++. .++++. .+|.....     +.+..    +...+         ....+.+++|++++.
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~-~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~   77 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFAR-AGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV   77 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHH-TTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred             CEEEEcC-CHHHHHHHHHHHh-CCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence            7999996 9999999987775 488876 45532000     00000    00000         011345677877765


Q ss_pred             hccccCCCccEEEEcCChH-----hHHHHHHHHHHcCCCeEEeCCCCCHHH
Q 025154           99 GSISQSKARAVVIDFTDAS-----TVYDNVKQATAFGMRSVVYVPHIQLET  144 (257)
Q Consensus        99 ~~~~~~~~~DVvIDFT~p~-----~~~~~~~~a~~~Gi~vViGTTG~s~e~  144 (257)
                             ++|+||+...-+     ..+..+...+.....+.+-|.+++..+
T Consensus        78 -------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~  121 (180)
T PF02737_consen   78 -------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE  121 (180)
T ss_dssp             -------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred             -------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence                   588888886321     122333333334444445455666543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.68  E-value=0.12  Score=47.22  Aligned_cols=100  Identities=12%  Similarity=0.184  Sum_probs=55.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhhcCCC---------CCCeeeecCHHHH
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVCDMEQ---------PLEIPVMSDLTMV   97 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---------~g~~~g~~~---------~~gv~v~~dl~~~   97 (257)
                      -||+|+|+ |.||+.++..++ ..+++++ ++|......+         ...+...+.         ...+.+++|+++ 
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-   81 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCA-RAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-   81 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence            48999996 999999998776 4588866 4553210000         011111100         012346778854 


Q ss_pred             HhccccCCCccEEEEcCCh-----HhHHHHHHHHH-HcCCCeEEeCCCCCHHHH
Q 025154           98 LGSISQSKARAVVIDFTDA-----STVYDNVKQAT-AFGMRSVVYVPHIQLETV  145 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT~p-----~~~~~~~~~a~-~~Gi~vViGTTG~s~e~~  145 (257)
                      ++      ++|+||+.-.-     ...+..+..++ ..+..++.-||++...++
T Consensus        82 ~~------~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l  129 (286)
T PRK07819         82 FA------DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL  129 (286)
T ss_pred             hC------CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence            43      78999987531     12233344444 455666666667665443

>PLN02427 UDP-apiose/xylose synthase

Probab=95.67  E-value=0.054  Score=50.86  Aligned_cols=36  Identities=17%  Similarity=0.119  Sum_probs=29.6

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +..+|||.|+|++|-+|+.+++.+.+..+.+++++.
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~   46 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD   46 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence            345689999999999999999999876567877653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.66  E-value=0.095  Score=45.48  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=25.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .-||.|+|+ |.+|..+++.+.. .++.=+-++|.
T Consensus        21 ~~~VlviG~-GglGs~ia~~La~-~Gv~~i~lvD~   53 (202)
T TIGR02356        21 NSHVLIIGA-GGLGSPAALYLAG-AGVGTIVIVDD   53 (202)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEecC
Confidence            458999995 9999999998875 46644456774

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.65  E-value=0.057  Score=53.96  Aligned_cols=93  Identities=13%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             CCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC--HHHHHhccccCCCcc
Q 025154           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARA  108 (257)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~D  108 (257)
                      +.....|+.|+|| |.-|..+++.+...+.+..||.+|...      ...|. .-.|++|+..  +.+++++    ...|
T Consensus       112 ~~~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~------~~~g~-~i~Gv~V~g~~~i~~~v~~----~~~~  179 (588)
T COG1086         112 QKDNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP------DLTGM-KIRGVPVLGRIEIERVVEE----LGIQ  179 (588)
T ss_pred             cccCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh------hhcCC-EEeceeeechhHHHHHHHH----cCCc
Confidence            5556689999997 999999999999999999999999541      11222 1247788654  4555554    5666


Q ss_pred             EEEEc---CChHhHHHHHHHHHHcCCCeEE
Q 025154          109 VVIDF---TDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       109 VvIDF---T~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      -++-+   -.++...+.++.|.+.|+.+=+
T Consensus       180 ~iiiAips~~~~~~~~i~~~l~~~~~~v~~  209 (588)
T COG1086         180 LILIAIPSASQEERRRILLRLARTGIAVRI  209 (588)
T ss_pred             eEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence            43333   2466777888888888866543

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.64  E-value=0.14  Score=47.22  Aligned_cols=104  Identities=16%  Similarity=0.134  Sum_probs=57.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC--C---------CCCeeeecCHHHHHhc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME--Q---------PLEIPVMSDLTMVLGS  100 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--g~~--~---------~~gv~v~~dl~~~l~~  100 (257)
                      .||||+|+|+ |.||..++..+.+ .++++.. +++..   ....+.  +..  .         +..+..+++++ .+  
T Consensus         1 ~~mkI~IiG~-G~mG~~~A~~L~~-~G~~V~~-~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~--   71 (341)
T PRK08229          1 MMARICVLGA-GSIGCYLGGRLAA-AGADVTL-IGRAR---IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA-AL--   71 (341)
T ss_pred             CCceEEEECC-CHHHHHHHHHHHh-cCCcEEE-EecHH---HHHHHHhcCceeecCCCcceecccceeEeccChh-hc--
Confidence            3689999995 9999999998875 4677665 44321   111111  000  0         00122344553 33  


Q ss_pred             cccCCCccEEEEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHh
Q 025154          101 ISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFC  152 (257)
Q Consensus       101 ~~~~~~~DVvIDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~e~~~~L~~~a  152 (257)
                          ..+|+||-.+.+....+.+...   +..+..+|.-+.|+...  +.+++..
T Consensus        72 ----~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~--~~l~~~~  120 (341)
T PRK08229         72 ----ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA--DVLRAAL  120 (341)
T ss_pred             ----cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH--HHHHHhC
Confidence                3799999876555444444333   33444455566788743  2455443

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.62  E-value=0.1  Score=47.40  Aligned_cols=119  Identities=14%  Similarity=0.109  Sum_probs=74.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcC----CC-------CC-CeeeecCH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDM----EQ-------PL-EIPVMSDL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~---~g~----~~-------~~-gv~v~~dl   94 (257)
                      ..||+|.| .|.+|+..++.+. +.+.+++++.|+.     ..|-|..++   ...    ..       .+ +.. +-+.
T Consensus        38 g~~vaIqG-fGnVG~~~a~~L~-e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~  114 (254)
T cd05313          38 GKRVAISG-SGNVAQYAAEKLL-ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEG  114 (254)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCC
Confidence            46999999 5999999999876 5689999999942     335554433   100    00       00 122 2255


Q ss_pred             HHHHhccccCCCccEEEEcCChHh-HHHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154           95 TMVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT~p~~-~~~~~~~a~~~Gi~vViGTT-G-~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      ++++.     .++||+|=+..-.. ..+++....+++..+|++-. + ++++..+.|   .++   .|++.|-|..
T Consensus       115 ~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L---~~r---GI~vvPD~la  179 (254)
T cd05313         115 KKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVF---RQA---GVLFAPGKAA  179 (254)
T ss_pred             cchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHH---HHC---CcEEECchhh
Confidence            66776     48999997654333 35677766677999999876 2 455333333   233   4666676643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.59  E-value=0.13  Score=48.48  Aligned_cols=96  Identities=18%  Similarity=0.280  Sum_probs=60.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC------------Ccchh-----------hhhcCCCCCCeeee
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------GEDIG-----------MVCDMEQPLEIPVM   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~------------g~d~g-----------~~~g~~~~~gv~v~   91 (257)
                      ..||.|+|+ |.+|..+++.++. .++.=+.++|....            ..|++           .+..+.....+..+
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~  101 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVR-AGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI  101 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            458999996 9999999998874 47765667774210            01111           01111111112111


Q ss_pred             ------cCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCC
Q 025154           92 ------SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        92 ------~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                            ++.++++.      ++|+|||.+ +++.-+..-..|.++++|+|.|..
T Consensus       102 ~~~~~~~~~~~~~~------~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~  149 (339)
T PRK07688        102 VQDVTAEELEELVT------GVDLIIDATDNFETRFIVNDAAQKYGIPWIYGAC  149 (339)
T ss_pred             eccCCHHHHHHHHc------CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence                  13345553      789999998 466666677889999999998653

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.57  E-value=0.12  Score=49.03  Aligned_cols=96  Identities=20%  Similarity=0.291  Sum_probs=57.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----~~g~~~~~gv~v~--   91 (257)
                      ..||+|+|+ |..|..+++.+.. .++.=+-++|...                .|+.-.+     +..+.....+..+  
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La~-~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLAA-AGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            358999996 9999999998874 5665555666420                1111111     1111001112111  


Q ss_pred             ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                          +++++++.      ++|+|||.|. ++.-...-..|.++++|+|.+.+
T Consensus       213 ~~~~~~~~~~~~------~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~  258 (376)
T PRK08762        213 RVTSDNVEALLQ------DVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAV  258 (376)
T ss_pred             cCChHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                12344553      6899999984 45545566888999999987743

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.56  E-value=0.089  Score=45.68  Aligned_cols=107  Identities=13%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      ++|+|+|. |+||+.+++.+. ..+.+++ ++|...  ....++.   ..++....+ .++++.     .++||++=.+.
T Consensus        29 k~v~I~G~-G~vG~~~A~~L~-~~G~~Vv-v~D~~~--~~~~~~~---~~~g~~~v~-~~~l~~-----~~~Dv~vp~A~   94 (200)
T cd01075          29 KTVAVQGL-GKVGYKLAEHLL-EEGAKLI-VADINE--EAVARAA---ELFGATVVA-PEEIYS-----VDADVFAPCAL   94 (200)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEcCCH--HHHHHHH---HHcCCEEEc-chhhcc-----ccCCEEEeccc
Confidence            68999995 999999999887 4688998 677531  1122221   122333333 355554     37999884443


Q ss_pred             hH-hHHHHHHHHHHcCCCeEEeCC-C-CC-HHHHHHHHHHhhhcCceEEEccCc
Q 025154          116 AS-TVYDNVKQATAFGMRSVVYVP-H-IQ-LETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       116 p~-~~~~~~~~a~~~Gi~vViGTT-G-~s-~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      -. ...+++   .+.+.++|++-. + ++ ++..+.|    ++.  .++|.|-|
T Consensus        95 ~~~I~~~~~---~~l~~~~v~~~AN~~~~~~~~~~~L----~~~--Gi~~~Pd~  139 (200)
T cd01075          95 GGVINDDTI---PQLKAKAIAGAANNQLADPRHGQML----HER--GILYAPDY  139 (200)
T ss_pred             ccccCHHHH---HHcCCCEEEECCcCccCCHhHHHHH----HHC--CCEEeCce
Confidence            22 223333   355678888765 2 44 3332333    443  45555644

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02778 3,5-epimerase/4-reductase

Probab=95.54  E-value=0.11  Score=47.48  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=27.3

Q ss_pred             CCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEE
Q 025154           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (257)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv   64 (257)
                      .|....|||.|.|++|-+|+.+++.+.+ .+.+++
T Consensus         4 ~~~~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~   37 (298)
T PLN02778          4 TAGSATLKFLIYGKTGWIGGLLGKLCQE-QGIDFH   37 (298)
T ss_pred             CCCCCCCeEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence            3444568999999999999999998875 467765

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=95.54  E-value=0.077  Score=48.23  Aligned_cols=86  Identities=16%  Similarity=0.213  Sum_probs=52.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||.|.|++|-+|+.+++.+.+. + ++++ ++....     .+     ..++.-.+.++++++.    .++|+||.+..
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-----~~-----~~Dl~d~~~~~~~~~~----~~~D~Vih~Aa   63 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-----DY-----CGDFSNPEGVAETVRK----IRPDVIVNAAA   63 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-----cc-----cCCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence            58999999999999999988754 4 4543 443210     00     0111112234455542    36899998741


Q ss_pred             ----------hHh--------HHHHHHHHHHcCCCeEEeCC
Q 025154          116 ----------AST--------VYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       116 ----------p~~--------~~~~~~~a~~~Gi~vViGTT  138 (257)
                                |+.        +...++.|.+.|+++|.-.|
T Consensus        64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss  104 (299)
T PRK09987         64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST  104 (299)
T ss_pred             cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence                      221        23466778888988886544

>PRK06545 prephenate dehydrogenase; Validated

Probab=95.49  E-value=0.21  Score=47.00  Aligned_cols=102  Identities=14%  Similarity=0.161  Sum_probs=58.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--eecCHHHHHhccccCCCccEEEEcC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ||+|+| +|.||..+++.+.. .++++. +++............    ..++.  .++++++++.      ++|+||-.+
T Consensus         2 ~I~iIG-~GliG~siA~~L~~-~G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~------~aDlVilav   68 (359)
T PRK06545          2 TVLIVG-LGLIGGSLALAIKA-AGPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAAA------EADLIVLAV   68 (359)
T ss_pred             eEEEEE-eCHHHHHHHHHHHh-cCCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHhc------CCCEEEEeC
Confidence            799999 59999999998874 444443 333221111111111    12221  2456777764      799999888


Q ss_pred             ChHhHHHHHHHHHH--cC-CCeEEeCCCCCHHHHHHHHHH
Q 025154          115 DASTVYDNVKQATA--FG-MRSVVYVPHIQLETVSALSAF  151 (257)
Q Consensus       115 ~p~~~~~~~~~a~~--~G-i~vViGTTG~s~e~~~~L~~~  151 (257)
                      .|....+.+.....  .. -.+|+-.++...+-.+.+++.
T Consensus        69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~  108 (359)
T PRK06545         69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL  108 (359)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence            88777766665553  12 234543445554445555554

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.49  E-value=0.072  Score=42.86  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=25.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||+|+|+ |..|..+++.+.. .++.=.-++|.
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~-~Gv~~i~lvD~   34 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLAR-SGVGKITLVDD   34 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHH-HTTSEEEEEES
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-hCCCceeecCC
Confidence            58999996 9999999999875 46665667884

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.48  E-value=0.029  Score=46.03  Aligned_cols=126  Identities=15%  Similarity=0.125  Sum_probs=68.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCC--cchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g--~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      |||+|+|++|..|+.++-.+...+-..=+..+|..   ..|  .|+...... ....+.+..+..+.+      .++|+|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~~~~~------~~aDiv   73 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP-LPSPVRITSGDYEAL------KDADIV   73 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG-STEEEEEEESSGGGG------TTESEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh-ccccccccccccccc------ccccEE
Confidence            69999998899999999988766443324467753   111  122222111 112344444444455      379988


Q ss_pred             EEcC-ChHhH-HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC
Q 025154          111 IDFT-DASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF  181 (257)
Q Consensus       111 IDFT-~p~~~-~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~  181 (257)
                      |-.. .|..- .+. ...++.+.+++       .+-.+.|.+.+.+  .-+++.+|=   ++++.++++...+
T Consensus        74 vitag~~~~~g~sR-~~ll~~N~~i~-------~~~~~~i~~~~p~--~~vivvtNP---vd~~t~~~~~~s~  133 (141)
T PF00056_consen   74 VITAGVPRKPGMSR-LDLLEANAKIV-------KEIAKKIAKYAPD--AIVIVVTNP---VDVMTYVAQKYSG  133 (141)
T ss_dssp             EETTSTSSSTTSSH-HHHHHHHHHHH-------HHHHHHHHHHSTT--SEEEE-SSS---HHHHHHHHHHHHT
T ss_pred             EEeccccccccccH-HHHHHHhHhHH-------HHHHHHHHHhCCc--cEEEEeCCc---HHHHHHHHHHhhC
Confidence            8443 11110 011 11123333333       3445677777755  567777776   6677676666553

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=95.43  E-value=0.091  Score=47.41  Aligned_cols=96  Identities=15%  Similarity=0.131  Sum_probs=53.9

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccC---CCccEEEEcC
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS---KARAVVIDFT  114 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~---~~~DVvIDFT  114 (257)
                      |.|+|++|-+|+.+++.+.+ .+.+++.++++...+.....+.    ..++.-..+.+++++.+.++   .++|+||.+.
T Consensus         2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNLKDGTKFVNLV----DLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHh-CCCceEEEecCCCcchHHHhhh----hhhhhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999998875 4787888887532121110111    11111111223333210000   1589999974


Q ss_pred             C--------h--------HhHHHHHHHHHHcCCCeEEeCC
Q 025154          115 D--------A--------STVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       115 ~--------p--------~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      .        +        ..+...++.|.++++++|.-.|
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS  116 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS  116 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcc
Confidence            1        1        1133566778888888775433

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.41  E-value=0.16  Score=46.75  Aligned_cols=72  Identities=22%  Similarity=0.204  Sum_probs=43.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-Ccch--------hhhhcCCC---------CCCeeeecCHHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDI--------GMVCDMEQ---------PLEIPVMSDLTM   96 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~--------g~~~g~~~---------~~gv~v~~dl~~   96 (257)
                      ++||+|+| .|.||..++..+.. .+++++ ++|+... ...+        ..+...+.         ...+.++.|+++
T Consensus         2 ~~~V~VIG-~G~mG~~iA~~la~-~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~   78 (308)
T PRK06129          2 MGSVAIIG-AGLIGRAWAIVFAR-AGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD   78 (308)
T ss_pred             CcEEEEEC-ccHHHHHHHHHHHH-CCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence            35899999 59999999998775 477765 4664310 0000        00111000         012456788888


Q ss_pred             HHhccccCCCccEEEEcCC
Q 025154           97 VLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        97 ~l~~~~~~~~~DVvIDFT~  115 (257)
                      ++.      ++|++|....
T Consensus        79 a~~------~ad~Vi~avp   91 (308)
T PRK06129         79 AVA------DADYVQESAP   91 (308)
T ss_pred             hhC------CCCEEEECCc
Confidence            874      7999886653

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.38  E-value=0.16  Score=45.51  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=26.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .-||+|+|+ |..|..+++.++. .++.=..++|.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~   64 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAA-AGVGTLTLVDF   64 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence            459999996 9999999999875 56655556763

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.38  E-value=0.51  Score=45.49  Aligned_cols=136  Identities=15%  Similarity=0.157  Sum_probs=74.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeee-c--CHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S--DLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~-~--dl~~~l~~~~~~~~~DVv  110 (257)
                      +.||.|+|. |+.|...++.+....+ +++. +.|....-.....+    .. |+.++ .  +. +.+.      ++|+|
T Consensus         7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~l----~~-g~~~~~g~~~~-~~~~------~~d~v   72 (438)
T PRK04663          7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQL----PE-DVELHSGGWNL-EWLL------EADLV   72 (438)
T ss_pred             CceEEEEec-cHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHHh----hc-CCEEEeCCCCh-HHhc------cCCEE
Confidence            468999995 9999999998887655 7665 47743211111112    12 56552 2  33 3343      68977


Q ss_pred             EEcC-ChHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154          111 IDFT-DASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (257)
Q Consensus       111 IDFT-~p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~  173 (257)
                      |--+ .|. ..+.+..|.++|+|++              ||-||-+-  --...|..+-++.|..+.+..|  +|+.++.
T Consensus        73 V~SpgI~~-~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gn--iG~~~~~  149 (438)
T PRK04663         73 VTNPGIAL-ATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGN--IGVPALD  149 (438)
T ss_pred             EECCCCCC-CCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcc--cCHHHHh
Confidence            6433 132 2344555556665544              45555321  1123455555666666777788  4665432


Q ss_pred             HHHHHhcCCCCCeEEEecc
Q 025154          174 QAAISASFHYKNVEIVESR  192 (257)
Q Consensus       174 ~~a~~l~~~~~DiEIiE~H  192 (257)
                      .    +. ...|+-|+|.-
T Consensus       150 ~----~~-~~~~~~V~E~s  163 (438)
T PRK04663        150 L----LE-QDAELYVLELS  163 (438)
T ss_pred             h----hc-CCCCEEEEEcC
Confidence            1    12 23577778853

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=95.37  E-value=0.2  Score=47.58  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=25.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .+.||+|+|++|.||+.+++.+.. .++++. ++|+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~-~~d~  130 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVR-ILEQ  130 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHH-CCCeEE-EeCC
Confidence            457999999679999999998875 466644 3443

>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function

Probab=95.37  E-value=0.2  Score=44.47  Aligned_cols=149  Identities=10%  Similarity=0.062  Sum_probs=96.6

Q ss_pred             CChHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-ChHhHHH
Q 025154           44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD  121 (257)
Q Consensus        44 ~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~  121 (257)
                      .|+-|.++...+.+.+++. .+..++-+.   ...++           .+++++.+.++   .++|++|..+ +|+.+++
T Consensus         5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~i---~~~Dl~I~y~lHPDl~~~   67 (217)
T PF02593_consen    5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPKI---PEADLLIAYGLHPDLTYE   67 (217)
T ss_pred             eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence            5899999999998887776 344555321   11111           24455555543   5799999987 8999999


Q ss_pred             HHHHHHHcCCCeEEeCCCCC-HHHHHHHHHHhhhcCceEEEccCch-H---HHHHHHHHHHHhcCCCCCeEEEec----c
Q 025154          122 NVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPTLS-I---GSILLQQAAISASFHYKNVEIVES----R  192 (257)
Q Consensus       122 ~~~~a~~~Gi~vViGTTG~s-~e~~~~L~~~a~~~gipvl~spNfS-l---Gvnll~~~a~~l~~~~~DiEIiE~----H  192 (257)
                      ..+.|.+.|+..||....-. ..-.+.|++.+++.|+-+.+.-.|- |   |--.+.+|++.+.+.-..|++ +-    .
T Consensus        68 l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGkP~~ei~v-~~~~I~~  146 (217)
T PF02593_consen   68 LPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGKPKVEIEV-ENGKIKD  146 (217)
T ss_pred             HHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCCceEEEEe-cCCcEEE
Confidence            99999999999887543211 2345578888899887777655442 1   223478888887654333332 31    1


Q ss_pred             CCCCCCCCCccHHHHHHh
Q 025154          193 PNARVRYMTRTLISMQVC  210 (257)
Q Consensus       193 H~~K~DapSGTa~~l~~~  210 (257)
                      -+=+.+||=|+.-.+|..
T Consensus       147 V~VlR~aPCGsT~~vAk~  164 (217)
T PF02593_consen  147 VKVLRSAPCGSTWFVAKR  164 (217)
T ss_pred             EEEEecCCCccHHHHHHH
Confidence            122334899988888753

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.36  E-value=0.14  Score=44.40  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=26.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..||.|+|+ |.+|..+++.+. ..++.=+.++|.
T Consensus        19 ~s~VlviG~-gglGsevak~L~-~~GVg~i~lvD~   51 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLV-LAGIDSITIVDH   51 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEEC
Confidence            358999996 889999999987 467776667874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.35  E-value=0.023  Score=53.59  Aligned_cols=32  Identities=31%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      +||||.| .||+||.+.|++.+.+++++|++=|
T Consensus         3 ~kv~ING-fGRIGR~v~R~~~~~~~~~ivaiNd   34 (342)
T PTZ00353          3 ITVGING-FGPVGKAVLFASLTDPLVTVVAVND   34 (342)
T ss_pred             eEEEEEC-CChHHHHHHHHHHhcCCcEEEEecC
Confidence            7999999 5999999999988788999999876

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=95.33  E-value=0.025  Score=53.73  Aligned_cols=34  Identities=35%  Similarity=0.510  Sum_probs=29.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc----CCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~   69 (257)
                      ++||||+| .||+||.+.|++.+.    +++++|++-|+
T Consensus         3 ~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~   40 (361)
T PTZ00434          3 PIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDM   40 (361)
T ss_pred             ceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence            47999999 599999999987764    68999999873

>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]

Probab=95.32  E-value=0.081  Score=49.91  Aligned_cols=126  Identities=17%  Similarity=0.239  Sum_probs=77.7

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhc---------------------CCcEEEEEEe--cCCCCcchhhhhcCC------
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAID--SHSVGEDIGMVCDME------   83 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~---------------------~~~eLvg~vd--~~~~g~d~g~~~g~~------   83 (257)
                      ..|+||+|+| -|.--+.+++-+..-                     .+.++|+.+|  .++.|+|+.+..-..      
T Consensus         3 ~~~vrv~iiG-~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~   81 (362)
T COG1260           3 TTMVRVAIIG-VGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK   81 (362)
T ss_pred             cceEEEEEEe-ccchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence            3589999999 599888888776432                     2568888888  346677765543110      


Q ss_pred             -----CCCCeee---------ecCHHHHHhc--------------cccCCCccEEEEcC---ChHhHHHHHHHHHHcCCC
Q 025154           84 -----QPLEIPV---------MSDLTMVLGS--------------ISQSKARAVVIDFT---DASTVYDNVKQATAFGMR  132 (257)
Q Consensus        84 -----~~~gv~v---------~~dl~~~l~~--------------~~~~~~~DVvIDFT---~p~~~~~~~~~a~~~Gi~  132 (257)
                           ...|+.+         ...+.+.++.              +......|+++.|.   ..++++.++..+++.|++
T Consensus        82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a  161 (362)
T COG1260          82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA  161 (362)
T ss_pred             eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence                 0112211         0112222220              00112345555554   256778889999999999


Q ss_pred             eEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          133 SVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       133 vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      .|=+++-+...+ ..+.+.++++|+|++
T Consensus       162 fvN~~P~~iA~d-P~~~~~fee~g~pi~  188 (362)
T COG1260         162 FVNAIPVFIASD-PAWVELFEEKGLPIA  188 (362)
T ss_pred             eecccCccccCC-HHHHHHHHHcCCcee
Confidence            999988654322 357888888888877

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.32  E-value=0.11  Score=47.18  Aligned_cols=31  Identities=26%  Similarity=0.280  Sum_probs=24.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||+|+|+ |.||..++..++. .+++++ ++|.
T Consensus         5 ~kI~vIGa-G~mG~~iA~~la~-~G~~V~-l~d~   35 (292)
T PRK07530          5 KKVGVIGA-GQMGNGIAHVCAL-AGYDVL-LNDV   35 (292)
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-CCCeEE-EEeC
Confidence            58999995 9999999998764 577766 4664

>PRK05865 hypothetical protein; Provisional

Probab=95.26  E-value=0.14  Score=53.82  Aligned_cols=111  Identities=13%  Similarity=0.140  Sum_probs=61.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||.|.|++|.+|+.+++.+.+ .+.++++...+.. ......+. . -..++.-.++++++++      ++|+||.+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~-~G~~Vv~l~R~~~-~~~~~~v~-~-v~gDL~D~~~l~~al~------~vD~VVHlAa   70 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLS-QGHEVVGIARHRP-DSWPSSAD-F-IAADIRDATAVESAMT------GADVVAHCAW   70 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEECCch-hhcccCce-E-EEeeCCCHHHHHHHHh------CCCEEEECCC
Confidence            5899999999999999998875 5788876543211 00000000 0 0001111123444553      6999999863


Q ss_pred             h---------HhHHHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          116 A---------STVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       116 p---------~~~~~~~~~a~~~Gi~-vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      .         ..+...++.|.+.|+. +|.-.|..    ....++++++.+++++
T Consensus        71 ~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~----K~aaE~ll~~~gl~~v  121 (854)
T PRK05865         71 VRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH----QPRVEQMLADCGLEWV  121 (854)
T ss_pred             cccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH----HHHHHHHHHHcCCCEE
Confidence            2         2344556777778864 44333322    2334555555666554

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=95.22  E-value=0.17  Score=49.54  Aligned_cols=86  Identities=16%  Similarity=0.126  Sum_probs=58.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHH---HHhccccCCCccE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV  109 (257)
                      .-||.|+|+ |..|+.+++.+.+++  +++++|.+|.+..    .       ..++++..+.++   ++.+    .++|-
T Consensus       143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~----~-------g~~VpvlG~~~dL~~~v~~----~~Ide  206 (463)
T PRK10124        143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP----G-------GVSNDWAGNLQQLVEDAKA----GKIHN  206 (463)
T ss_pred             CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc----c-------cCCCCcCCCHHHHHHHHHh----CCCCE
Confidence            357999995 999999999998765  6899999985321    0       123444555444   4443    57886


Q ss_pred             EEEcC---ChHhHHHHHHHHHHcCCCeEEe
Q 025154          110 VIDFT---DASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus       110 vIDFT---~p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      ||-..   ..+...+.+..|.+.++++.+-
T Consensus       207 ViIAip~~~~~~l~ell~~~~~~~v~V~iv  236 (463)
T PRK10124        207 VYIAMSMCDGARVKKLVRQLADTTCSVLLI  236 (463)
T ss_pred             EEEeCCCcchHHHHHHHHHHHHcCCeEEEe
Confidence            66432   2345567788899999987653

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.21  E-value=0.4  Score=45.98  Aligned_cols=137  Identities=20%  Similarity=0.182  Sum_probs=74.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcch----hhhhcCCCCCCeee-e-cCHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----GMVCDMEQPLEIPV-M-SDLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~----g~~~g~~~~~gv~v-~-~dl~~~l~~~~~~~~~DV  109 (257)
                      .+|.|+|+ |++|..+++.+. ..+.++++ +|.... ...    .++.    +.++.+ + +..++..      ..+|+
T Consensus         6 k~v~iiG~-g~~G~~~A~~l~-~~G~~V~~-~d~~~~-~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~~d~   71 (450)
T PRK14106          6 KKVLVVGA-GVSGLALAKFLK-KLGAKVIL-TDEKEE-DQLKEALEELG----ELGIELVLGEYPEEFL------EGVDL   71 (450)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCch-HHHHHHHHHHH----hcCCEEEeCCcchhHh------hcCCE
Confidence            58999996 889999999877 56788764 564310 111    2221    224433 2 2233333      36999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCe--------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRS--------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~v--------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~  173 (257)
                      ||--+......+.+..|.++|+++              |||-||-+-  -..+.|..+-+..|-++.+..|  +|+.+..
T Consensus        72 vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~~  149 (450)
T PRK14106         72 VVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLID  149 (450)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHHH
Confidence            887664333344555555555543              556665321  1223455555555556666666  6665542


Q ss_pred             HHHHHhcCCCCCeEEEec
Q 025154          174 QAAISASFHYKNVEIVES  191 (257)
Q Consensus       174 ~~a~~l~~~~~DiEIiE~  191 (257)
                      ... ..  ...|+-++|+
T Consensus       150 ~~~-~~--~~~~~~v~E~  164 (450)
T PRK14106        150 AVE-EY--GEDDIIVAEV  164 (450)
T ss_pred             HHh-cC--CCCCEEEEEc
Confidence            222 11  2356667774

>PLN03139 formate dehydrogenase; Provisional

Probab=95.19  E-value=0.15  Score=48.88  Aligned_cols=65  Identities=20%  Similarity=0.093  Sum_probs=45.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+..  .+.. ..   ...++...+++++++.      .+|||+-..
T Consensus       199 gktVGIVG-~G~IG~~vA~~L~-afG~~V~~-~d~~~--~~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~l  263 (386)
T PLN03139        199 GKTVGTVG-AGRIGRLLLQRLK-PFNCNLLY-HDRLK--MDPE-LE---KETGAKFEEDLDAMLP------KCDVVVINT  263 (386)
T ss_pred             CCEEEEEe-ecHHHHHHHHHHH-HCCCEEEE-ECCCC--cchh-hH---hhcCceecCCHHHHHh------hCCEEEEeC
Confidence            35899999 5999999999886 46899865 67531  1111 11   1345555679999995      699877543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.14  E-value=0.28  Score=46.31  Aligned_cols=91  Identities=22%  Similarity=0.171  Sum_probs=58.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---cCHHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~---~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +|+|+|+ |.+|...++.+.. -+.+++++-.+...-+++.++ |.    ...+.   .+.-+.+.     ..+|++||+
T Consensus       169 ~V~I~G~-GGlGh~avQ~Aka-~ga~Via~~~~~~K~e~a~~l-GA----d~~i~~~~~~~~~~~~-----~~~d~ii~t  236 (339)
T COG1064         169 WVAVVGA-GGLGHMAVQYAKA-MGAEVIAITRSEEKLELAKKL-GA----DHVINSSDSDALEAVK-----EIADAIIDT  236 (339)
T ss_pred             EEEEECC-cHHHHHHHHHHHH-cCCeEEEEeCChHHHHHHHHh-CC----cEEEEcCCchhhHHhH-----hhCcEEEEC
Confidence            7999996 9999999987664 458988755432111122221 10    11222   12223332     139999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      ..+......++.+...|.-+++|-++
T Consensus       237 v~~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         237 VGPATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             CChhhHHHHHHHHhcCCEEEEECCCC
Confidence            88666677777777888888888875

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.11  E-value=0.28  Score=42.52  Aligned_cols=33  Identities=15%  Similarity=0.350  Sum_probs=27.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      .||.|+|+ |..|..+++.+. ..++.=+.++|..
T Consensus        22 s~VlIiG~-gglG~evak~La-~~GVg~i~lvD~d   54 (197)
T cd01492          22 ARILLIGL-KGLGAEIAKNLV-LSGIGSLTILDDR   54 (197)
T ss_pred             CcEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            58999996 899999999987 5678777788843

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07574 formate dehydrogenase; Provisional

Probab=95.08  E-value=0.2  Score=48.05  Aligned_cols=64  Identities=22%  Similarity=0.230  Sum_probs=43.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++|+|+| +|+||+.+++.+. .-++++.+ +|+.....+   ..   ...++..+.++++++.      .+|||+-..
T Consensus       193 ktVGIvG-~G~IG~~vA~~l~-~fG~~V~~-~dr~~~~~~---~~---~~~g~~~~~~l~ell~------~aDvV~l~l  256 (385)
T PRK07574        193 MTVGIVG-AGRIGLAVLRRLK-PFDVKLHY-TDRHRLPEE---VE---QELGLTYHVSFDSLVS------VCDVVTIHC  256 (385)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCCchh---hH---hhcCceecCCHHHHhh------cCCEEEEcC
Confidence            5899999 5999999999876 45788764 564321111   11   1235555678999995      799887554

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.08  E-value=0.29  Score=46.89  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||+|+| .|.||..++..++ . ++++++ +|.
T Consensus         1 mkI~VIG-lGyvGl~~A~~lA-~-G~~Vig-vD~   30 (388)
T PRK15057          1 MKITISG-TGYVGLSNGLLIA-Q-NHEVVA-LDI   30 (388)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-h-CCcEEE-EEC
Confidence            5899999 5999999996655 3 788664 663

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.06  E-value=0.054  Score=49.19  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=24.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -||+|+|+ |.||..++..+.. .++++. ++|.
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~-~G~~V~-~~d~   32 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAV-SGFQTT-LVDI   32 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHh-CCCcEE-EEeC
Confidence            37999995 9999999988764 477765 4564

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.05  E-value=0.097  Score=47.60  Aligned_cols=31  Identities=16%  Similarity=0.338  Sum_probs=24.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -||+|+|+ |.||..++..++. .+++++ ++|.
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~-~G~~V~-l~d~   34 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFAR-TGYDVT-IVDV   34 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHh-cCCeEE-EEeC
Confidence            47999996 9999999988764 577765 4664

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.97  E-value=0.25  Score=40.36  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             EEEEcCCChHHHHHHHHHHhcC-CcEEEEEEec
Q 025154           38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS   69 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~   69 (257)
                      |+|.|+||-+|+...+.+.+.| .+++++....
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~   33 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG   33 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence            6899999999999999998877 6999998873

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.96  E-value=0.64  Score=44.56  Aligned_cols=142  Identities=17%  Similarity=0.142  Sum_probs=77.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-C-cchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-G-EDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g-~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI  111 (257)
                      -+|.|+|+ |++|..+++.+. ..+.++++ .|.... . .....+.    +.|+.++  .+..+++.     ..+|+||
T Consensus         6 k~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~-----~~~d~vV   73 (447)
T PRK02472          6 KKVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQELL----EEGIKVICGSHPLELLD-----EDFDLMV   73 (447)
T ss_pred             CEEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHHH----hcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence            37899996 889999988766 56888765 463211 1 1112221    3355443  33444443     1389877


Q ss_pred             EcCC-hHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154          112 DFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (257)
Q Consensus       112 DFT~-p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~  174 (257)
                      --.. |. ....+..|.++|+|++              ||-||-+-  --...|..+-+..|.......|  +|+.+.. 
T Consensus        74 ~s~gi~~-~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gn--ig~p~~~-  149 (447)
T PRK02472         74 KNPGIPY-TNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGN--IGYPASE-  149 (447)
T ss_pred             ECCCCCC-CCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcc--cChhhHH-
Confidence            4331 22 2345666677777664              55555321  1233455555655666677777  4554432 


Q ss_pred             HHHHhcCCCCCeEEEeccCCC
Q 025154          175 AAISASFHYKNVEIVESRPNA  195 (257)
Q Consensus       175 ~a~~l~~~~~DiEIiE~HH~~  195 (257)
                      +....  ...|+-|+|.-+.+
T Consensus       150 ~~~~~--~~~~~~V~E~ss~~  168 (447)
T PRK02472        150 VAQKA--TADDTLVMELSSFQ  168 (447)
T ss_pred             HHhcC--CCCCEEEEEcCchh
Confidence            11111  23578888875544

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=94.92  E-value=0.091  Score=49.11  Aligned_cols=71  Identities=17%  Similarity=0.126  Sum_probs=42.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC------CcEEEEEEecC-----CCCcchhhhhcCC--CCCCeeeecCHHHHHhcc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSH-----SVGEDIGMVCDME--QPLEIPVMSDLTMVLGSI  101 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~~-----~~g~d~g~~~g~~--~~~gv~v~~dl~~~l~~~  101 (257)
                      |+||+|+||+|..|+.++..+...+      +.+|+. +|..     ..|.. -++....  ....+.+..++.+.++  
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~~~~~~~~~g~~-~Dl~d~~~~~~~~~~~~~~~~~~l~--   77 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDIPPALKALEGVV-MELQDCAFPLLKSVVATTDPEEAFK--   77 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEcCCcccccccee-eehhhccccccCCceecCCHHHHhC--
Confidence            6899999999999999999887643      236664 4532     11211 1111000  0113444567666664  


Q ss_pred             ccCCCccEEEEc
Q 025154          102 SQSKARAVVIDF  113 (257)
Q Consensus       102 ~~~~~~DVvIDF  113 (257)
                          ++|+||..
T Consensus        78 ----~aDiVI~t   85 (325)
T cd01336          78 ----DVDVAILV   85 (325)
T ss_pred             ----CCCEEEEe
Confidence                79988854

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06046 alanine dehydrogenase; Validated

Probab=94.91  E-value=0.073  Score=49.57  Aligned_cols=91  Identities=13%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      .-+|+|+| +|.||+.+++.+...++++.+.++++..  .....+... .+..+  +.+++|+++++      . +|+|+
T Consensus       129 ~~~vgiiG-~G~qa~~h~~al~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~l------~-aDiVv  198 (326)
T PRK06046        129 SKVVGIIG-AGNQARTQLLALSEVFDLEEVRVYDRTK--SSAEKFVERMSSVVGCDVTVAEDIEEAC------D-CDILV  198 (326)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhhCCceEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh------h-CCEEE
Confidence            35899999 5999999999998788999999998642  111111110 01223  55688999887      3 89999


Q ss_pred             EcCChHhHHHHH-HHHHHcCCCeE-EeC
Q 025154          112 DFTDASTVYDNV-KQATAFGMRSV-VYV  137 (257)
Q Consensus       112 DFT~p~~~~~~~-~~a~~~Gi~vV-iGT  137 (257)
                      -.|....  +.+ ...++.|.+|. ||.
T Consensus       199 ~aTps~~--P~~~~~~l~~g~hV~~iGs  224 (326)
T PRK06046        199 TTTPSRK--PVVKAEWIKEGTHINAIGA  224 (326)
T ss_pred             EecCCCC--cEecHHHcCCCCEEEecCC
Confidence            8774322  222 23357888876 663

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.88  E-value=0.41  Score=36.55  Aligned_cols=83  Identities=19%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC--
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT--  114 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT--  114 (257)
                      +|+|+|+--+|-..+-+.+. .-+.++... .+.. +..-.             ...++..+      .++|+||-||  
T Consensus         1 ~vliVGG~~~~~~~~~~~~~-~~G~~~~~h-g~~~-~~~~~-------------~~~l~~~i------~~aD~VIv~t~~   58 (97)
T PF10087_consen    1 SVLIVGGREDRERRYKRILE-KYGGKLIHH-GRDG-GDEKK-------------ASRLPSKI------KKADLVIVFTDY   58 (97)
T ss_pred             CEEEEcCCcccHHHHHHHHH-HcCCEEEEE-ecCC-CCccc-------------hhHHHHhc------CCCCEEEEEeCC
Confidence            58999933388888887665 567877765 2211 11000             01134455      3789888777  


Q ss_pred             -ChHhHHHHHHHHHHcCCCeEEeC-CCCC
Q 025154          115 -DASTVYDNVKQATAFGMRSVVYV-PHIQ  141 (257)
Q Consensus       115 -~p~~~~~~~~~a~~~Gi~vViGT-TG~s  141 (257)
                       +.......-+.|.++++|++.-- +|++
T Consensus        59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~   87 (97)
T PF10087_consen   59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS   87 (97)
T ss_pred             cChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence             45666666777788888888765 5665

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.86  E-value=0.049  Score=44.18  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=44.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C-CCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~-~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .-||.|+|+ |.||+.++..+... +++=+-++++..  ..+.+++.. . ....+.-++++.+.+.      ++|+||.
T Consensus        12 ~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~--~ra~~l~~~~~~~~~~~~~~~~~~~~~~------~~DivI~   81 (135)
T PF01488_consen   12 GKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTP--ERAEALAEEFGGVNIEAIPLEDLEEALQ------EADIVIN   81 (135)
T ss_dssp             TSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSH--HHHHHHHHHHTGCSEEEEEGGGHCHHHH------TESEEEE
T ss_pred             CCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHHHHHHcCccccceeeHHHHHHHHh------hCCeEEE
Confidence            358999996 99999999988755 777555676541  112222211 0 0112333667777775      7999998


Q ss_pred             cCC
Q 025154          113 FTD  115 (257)
Q Consensus       113 FT~  115 (257)
                      .|.
T Consensus        82 aT~   84 (135)
T PF01488_consen   82 ATP   84 (135)
T ss_dssp             -SS
T ss_pred             ecC
Confidence            774

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.85  E-value=0.16  Score=46.23  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=25.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +.||+|+|+ |.||..++..+.. .+++++ ++|.
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~-~G~~V~-~~d~   35 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAA-AGMDVW-LLDS   35 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeC
Confidence            357999995 9999999998874 477776 4564

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=94.85  E-value=0.15  Score=49.38  Aligned_cols=93  Identities=16%  Similarity=0.225  Sum_probs=54.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc--hhhhhcCCCCCCeee-ecC-HHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--IGMVCDMEQPLEIPV-MSD-LTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d--~g~~~g~~~~~gv~v-~~d-l~~~l~~~~~~~~~DVv  110 (257)
                      .|||.|.|++|-+|+.+++.+.+ .+.++++ +|+...+..  ...+.+   ...+.+ ..| ++..+      .++|+|
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~-ldr~~~~~~~~~~~~~~---~~~~~~~~~Di~~~~~------~~~D~V  188 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIV-IDNFFTGRKENLVHLFG---NPRFELIRHDVVEPIL------LEVDQI  188 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHH-CCCEEEE-EeCCCCccHhHhhhhcc---CCceEEEECccccccc------cCCCEE
Confidence            47999999999999999998875 4788876 443211211  111111   112221 122 22333      368999


Q ss_pred             EEcCC---h-------H--------hHHHHHHHHHHcCCCeEEeCC
Q 025154          111 IDFTD---A-------S--------TVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       111 IDFT~---p-------~--------~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      |.+..   +       .        .+...++.|.++|+.+|.-.|
T Consensus       189 iHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS  234 (436)
T PLN02166        189 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTST  234 (436)
T ss_pred             EECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence            99752   1       1        134566778888888775433

>PRK14852 hypothetical protein; Provisional

Probab=94.85  E-value=0.17  Score=53.67  Aligned_cols=96  Identities=17%  Similarity=0.221  Sum_probs=57.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchh-----hhhcCCCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIG-----MVCDMEQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~g-----~~~g~~~~~gv~v~--   91 (257)
                      .-||+|+|+ |..|..++..++. .|+.=.-++|..                ..|+.-.     .+..+.....|.++  
T Consensus       332 ~srVlVvGl-GGlGs~ia~~LAr-aGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~  409 (989)
T PRK14852        332 RSRVAIAGL-GGVGGIHLMTLAR-TGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE  409 (989)
T ss_pred             cCcEEEECC-cHHHHHHHHHHHH-cCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence            458999996 9999999998875 455444455521                1121111     11111111233333  


Q ss_pred             ----cCHHHHHhccccCCCccEEEEcCCh---HhHHHHHHHHHHcCCCeEEeCC
Q 025154           92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDFT~p---~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                          ++.++.++      ++|+|||.+..   +.-......|.++|+|+|.+..
T Consensus       410 ~I~~en~~~fl~------~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~  457 (989)
T PRK14852        410 GVAAETIDAFLK------DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP  457 (989)
T ss_pred             CCCHHHHHHHhh------CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence                24555664      78999997642   3335566778999999997765

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.85  E-value=0.3  Score=45.53  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=25.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      .+.||+|+|+ |.||..++..++ ..++ + +..+|.
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la-~~gl~~-i~LvDi   38 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIV-LKNLGD-VVLFDI   38 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHH-hCCCCe-EEEEeC
Confidence            3468999996 999999998766 4554 6 667884

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=94.85  E-value=0.14  Score=51.83  Aligned_cols=87  Identities=16%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc
Q 025154           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (257)
                      ..|...+|||.|+|++|-+|+.+++.+.+ .+.++...... .  .|.               +.+...+.+    .++|
T Consensus       374 ~~~~~~~mkiLVtGa~G~iG~~l~~~L~~-~g~~v~~~~~~-l--~d~---------------~~v~~~i~~----~~pd  430 (668)
T PLN02260        374 SSPGKPSLKFLIYGRTGWIGGLLGKLCEK-QGIAYEYGKGR-L--EDR---------------SSLLADIRN----VKPT  430 (668)
T ss_pred             cCCCCCCceEEEECCCchHHHHHHHHHHh-CCCeEEeeccc-c--ccH---------------HHHHHHHHh----hCCC
Confidence            34445668999999999999999998864 46666311110 0  011               112333432    4789


Q ss_pred             EEEEcCC-------------hH--------hHHHHHHHHHHcCCCeEEeCC
Q 025154          109 VVIDFTD-------------AS--------TVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       109 VvIDFT~-------------p~--------~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      +||.+..             |+        .+...++.|.+.|+++|+-.|
T Consensus       431 ~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss  481 (668)
T PLN02260        431 HVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFAT  481 (668)
T ss_pred             EEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcc
Confidence            9998741             11        234567788888988876544

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=94.85  E-value=0.47  Score=43.57  Aligned_cols=105  Identities=16%  Similarity=0.126  Sum_probs=58.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCCCCCCeee--ecCH-HHHHhccccCCCccE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL-TMVLGSISQSKARAV  109 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL-vg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl-~~~l~~~~~~~~~DV  109 (257)
                      .+++|+|+| .|.||+.+++.+.+ .+... +-..|.........      ..+|+.-  ..+. .+..      ..+|+
T Consensus         2 ~~~~v~IvG-~GliG~s~a~~l~~-~g~~v~i~g~d~~~~~~~~a------~~lgv~d~~~~~~~~~~~------~~aD~   67 (279)
T COG0287           2 ASMKVGIVG-LGLMGGSLARALKE-AGLVVRIIGRDRSAATLKAA------LELGVIDELTVAGLAEAA------AEADL   67 (279)
T ss_pred             CCcEEEEEC-CchHHHHHHHHHHH-cCCeEEEEeecCcHHHHHHH------hhcCcccccccchhhhhc------ccCCE
Confidence            367999999 69999999998874 45544 33344221000001      1223322  1222 2222      36899


Q ss_pred             EEEcCChHhHHHHHHHHHH-cCCC-eEEeCCCCCHHHHHHHHHHh
Q 025154          110 VIDFTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC  152 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~-~Gi~-vViGTTG~s~e~~~~L~~~a  152 (257)
                      ||-.++..++.+.++.... .+.. +|+.+|..-..-.+.++++.
T Consensus        68 VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~  112 (279)
T COG0287          68 VIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL  112 (279)
T ss_pred             EEEeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence            8866677777777776653 2222 55666666554455555554

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.83  E-value=0.17  Score=47.68  Aligned_cols=63  Identities=17%  Similarity=0.196  Sum_probs=42.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .+|+|+| +|.||+.+++.+. .-+++++...++.   .... .+   ...|+.+ .++++++.      .+|+|+-..
T Consensus        17 KtVGIIG-~GsIG~amA~nL~-d~G~~ViV~~r~~---~s~~-~A---~~~G~~v-~sl~Eaak------~ADVV~llL   79 (335)
T PRK13403         17 KTVAVIG-YGSQGHAQAQNLR-DSGVEVVVGVRPG---KSFE-VA---KADGFEV-MSVSEAVR------TAQVVQMLL   79 (335)
T ss_pred             CEEEEEe-EcHHHHHHHHHHH-HCcCEEEEEECcc---hhhH-HH---HHcCCEE-CCHHHHHh------cCCEEEEeC
Confidence            5799999 6999999999886 5789988655431   1111 11   1224444 38899885      799887543

>PRK07877 hypothetical protein; Provisional

Probab=94.82  E-value=0.18  Score=52.19  Aligned_cols=95  Identities=15%  Similarity=0.226  Sum_probs=58.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecC---------------CCCcchh-----hhhcCCCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH---------------SVGEDIG-----MVCDMEQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~---------------~~g~d~g-----~~~g~~~~~gv~v~--   91 (257)
                      .-||+|+|+ | .|..++..++. .++ -=.-++|..               ..|+.-.     .+..+.....|..+  
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~Lar-aGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~  183 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAA-EGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD  183 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHH-ccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence            468999997 8 99999988874 453 222344421               1111100     11111111233332  


Q ss_pred             ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                          +++++++.      ++|+|||.+. .+.-+..-..|.++|+|+|.|+.
T Consensus       184 ~i~~~n~~~~l~------~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~  229 (722)
T PRK07877        184 GLTEDNVDAFLD------GLDVVVEECDSLDVKVLLREAARARRIPVLMATS  229 (722)
T ss_pred             cCCHHHHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence                25666664      7999999984 55556666889999999999884

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.82  E-value=0.34  Score=44.57  Aligned_cols=106  Identities=13%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      +|||+|+|+ |.||..++..+.+ .+.++.-+....     ..|.......+......+.++++.++ .      ..+|+
T Consensus         5 ~m~I~IiG~-GaiG~~lA~~L~~-~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~~D~   75 (313)
T PRK06249          5 TPRIGIIGT-GAIGGFYGAMLAR-AGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PPCDW   75 (313)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CCCCE
Confidence            479999996 9999999988764 466666433221     00100000000000001223444443 2      36899


Q ss_pred             EEEcCChHh---HHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHH
Q 025154          110 VIDFTDAST---VYDNVKQATAFGMRSVVYVPHIQLETVSALSAF  151 (257)
Q Consensus       110 vIDFT~p~~---~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~  151 (257)
                      +|-++....   +.+.+...+..+..+|.-.-|+..+  +.|.+.
T Consensus        76 vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~--e~l~~~  118 (313)
T PRK06249         76 VLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE--EQLREI  118 (313)
T ss_pred             EEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH--HHHHHH
Confidence            887764333   3334444454555666656688643  345444

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.78  E-value=0.28  Score=45.27  Aligned_cols=119  Identities=16%  Similarity=0.214  Sum_probs=67.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .||.|+|+ |.+|..+++.+. ..++.=+.++|..... .|.+. +.-..+..|-+-.....+-+.+    .+++|-|+.
T Consensus        20 s~VLIvG~-gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~e----LNp~V~V~~   93 (286)
T cd01491          20 SNVLISGL-GGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAE----LNPYVPVTV   93 (286)
T ss_pred             CcEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHH----HCCCCEEEE
Confidence            58999996 999999999987 5688877888854211 11111 0000000010000011112222    367777765


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      .......+.+     .+..+|+-|+. +.+....|.++|+++++|++++.-..
T Consensus        94 ~~~~~~~~~l-----~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G  140 (286)
T cd01491          94 STGPLTTDEL-----LKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG  140 (286)
T ss_pred             EeccCCHHHH-----hcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            4322222222     23457776664 66777789999999999999875543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PLN02477 glutamate dehydrogenase

Probab=94.77  E-value=0.19  Score=48.62  Aligned_cols=116  Identities=17%  Similarity=0.176  Sum_probs=71.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCC-------CeeeecCHHHHHhccc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-------EIPVMSDLTMVLGSIS  102 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~-------gv~v~~dl~~~l~~~~  102 (257)
                      ..||+|.| .|.+|+.+++.+. +.+.+|+++.|+.     ..|-|..++.......       +... -+.++++.   
T Consensus       206 g~~VaIqG-fGnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~---  279 (410)
T PLN02477        206 GQTFVIQG-FGNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILV---  279 (410)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCcccee---
Confidence            36999999 5999999999776 5789999999853     3466665553210000       1111 13455665   


Q ss_pred             cCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       103 ~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                        .++||+|=+...... .+++.   +.+..+|++-.  .++++..+.|    ++.  .|+|.|-+..
T Consensus       280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~r--GI~~~PD~~a  336 (410)
T PLN02477        280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKK--GVVVLPDIYA  336 (410)
T ss_pred             --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHh
Confidence              489999966543322 33443   46899999876  3455544444    332  5666676654

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=94.76  E-value=0.45  Score=45.67  Aligned_cols=101  Identities=15%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hhcCCC--CCCeeeec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCDMEQ--PLEIPVMS   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d~g~----------------~~g~~~--~~gv~v~~   92 (257)
                      |.||+|.|+||-+|+..++.+...++ +++++........   +.+.+                +...-.  ..++.++.
T Consensus         1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~   80 (389)
T TIGR00243         1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV   80 (389)
T ss_pred             CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence            46899999999999999998887654 9999987632100   00000                000000  00123333


Q ss_pred             CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      ..+.+.+ +++..++|+|+-...--+...-...|++.|+.+-..
T Consensus        81 G~~~l~~-l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA  123 (389)
T TIGR00243        81 GEEGICE-MAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALA  123 (389)
T ss_pred             CHHHHHH-HHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe
Confidence            2222221 222246788887666666666677778888887664

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=94.71  E-value=0.3  Score=47.15  Aligned_cols=87  Identities=21%  Similarity=0.313  Sum_probs=59.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHH---HHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DVv  110 (257)
                      -|+.|+|+ |..|+.+++.+.+++  +++++|.+|.+..  ...      ...|+++..+.++   ++.+    .++|.|
T Consensus       126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~i~g~pVlg~~~~l~~~i~~----~~id~V  192 (445)
T TIGR03025       126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPS--DRV------EVAGLPVLGKLDDLVELVRA----HRVDEV  192 (445)
T ss_pred             CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcc--ccc------ccCCCcccCCHHHHHHHHHh----CCCCEE
Confidence            47999995 999999999987655  5899999985311  111      1246777665544   4443    578866


Q ss_pred             EEcC---ChHhHHHHHHHHHHcCCCeEE
Q 025154          111 IDFT---DASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       111 IDFT---~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      |-..   ..+...+.+..|.+.|+++.+
T Consensus       193 iIa~p~~~~~~~~~ll~~~~~~gv~V~~  220 (445)
T TIGR03025       193 IIALPLSEEARILELLLQLRDLGVDVRL  220 (445)
T ss_pred             EEecCcccHHHHHHHHHHHHhcCCEEEE
Confidence            5332   234446788899999998775

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.68  E-value=0.32  Score=43.50  Aligned_cols=30  Identities=30%  Similarity=0.388  Sum_probs=24.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ||.|+|+ |..|..+++.+.. .++.=.-++|
T Consensus         1 kVlvvG~-GGlG~eilk~La~-~Gvg~i~ivD   30 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLAL-MGFGQIHVID   30 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEe
Confidence            6899996 9999999999874 5666666777

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=94.64  E-value=0.24  Score=48.24  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=56.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCc-----EEEEEEecC-----CCC-------cchh----hh-----hcCCCCCCeee
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSH-----SVG-------EDIG----MV-----CDMEQPLEIPV   90 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd~~-----~~g-------~d~g----~~-----~g~~~~~gv~v   90 (257)
                      ||.|+|| |..|..+++.++ ..|+     .-+-++|..     ..+       .|+|    +.     ..+.....+..
T Consensus         1 kVlvVGa-GGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a   78 (435)
T cd01490           1 KVFLVGA-GAIGCELLKNFA-LMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA   78 (435)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence            6899996 999999999887 4566     555567732     111       1211    11     11111112222


Q ss_pred             ec-CH---------HHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEE-eCCCC
Q 025154           91 MS-DL---------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVV-YVPHI  140 (257)
Q Consensus        91 ~~-dl---------~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vVi-GTTG~  140 (257)
                      +. .+         ++.+      .++|+||+.. ++++-...-..|..+++|+|- ||.|+
T Consensus        79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~  134 (435)
T cd01490          79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGT  134 (435)
T ss_pred             EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccc
Confidence            21 11         1223      2689999987 566666777899999999994 44453

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=94.64  E-value=0.36  Score=45.35  Aligned_cols=96  Identities=15%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCCCC-----CCeeeecCHHHHHhccccCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQP-----LEIPVMSDLTMVLGSISQSK  105 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---~g~~~g~~~~-----~gv~v~~dl~~~l~~~~~~~  105 (257)
                      .+++|.|.||+|-+|+.+++.+. ..|+++.|.+..+...+.   +.++-+..++     .++.-+++++++++      
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL-~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLL-SRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHH-hCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence            56899999999999999999887 579999999875421111   1222221111     12233567888885      


Q ss_pred             CccEEEEcCCh-----------------HhHHHHHHHHHHcC--CCeEEe
Q 025154          106 ARAVVIDFTDA-----------------STVYDNVKQATAFG--MRSVVY  136 (257)
Q Consensus       106 ~~DVvIDFT~p-----------------~~~~~~~~~a~~~G--i~vViG  136 (257)
                      ++|.|+.-..|                 ..+...++.|.+..  +++|..
T Consensus        78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T  127 (327)
T KOG1502|consen   78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT  127 (327)
T ss_pred             CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence            79988765432                 23456778888888  777753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.63  E-value=0.31  Score=45.65  Aligned_cols=32  Identities=28%  Similarity=0.293  Sum_probs=25.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .-||+|+|+ |-||+.++..++ ..+++++ ++|.
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a-~aG~~V~-l~D~   38 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARAL-AHGLDVV-AWDP   38 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeC
Confidence            358999995 999999998776 5688887 4664

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.60  E-value=0.41  Score=44.71  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeee-cCH
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM-SDL   94 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----~~g~~~~~gv~v~-~dl   94 (257)
                      ||.|+|+ |..|..+++.++ ..|+.-+.++|...                .|+.-.+     +..+.....+..+ .++
T Consensus         1 kVlIVGa-GGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i   78 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANI   78 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence            6999996 999999999987 45777777887321                1111011     1111001112111 111


Q ss_pred             ------HHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEE-eCCCC
Q 025154           95 ------TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVV-YVPHI  140 (257)
Q Consensus        95 ------~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vVi-GTTG~  140 (257)
                            .+.+.      ++|+||+... +++-...-..|.++++|+|- ||.|+
T Consensus        79 ~~~~~~~~f~~------~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~  126 (312)
T cd01489          79 KDPDFNVEFFK------QFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGF  126 (312)
T ss_pred             CCccchHHHHh------cCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcc
Confidence                  23443      6889888874 44445566788889999885 45564

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.59  E-value=0.27  Score=47.03  Aligned_cols=128  Identities=18%  Similarity=0.287  Sum_probs=68.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---cCHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |||.|+|+ |++|+.+++.+.+ .+.+++ ++|...  .....+..   ..++.+ +   .+.+.+.+.  .-.++|.+|
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~-~g~~v~-vid~~~--~~~~~~~~---~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSG-ENNDVT-VIDTDE--ERLRRLQD---RLDVRTVVGNGSSPDVLREA--GAEDADLLI   70 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCcEE-EEECCH--HHHHHHHh---hcCEEEEEeCCCCHHHHHHc--CCCcCCEEE
Confidence            58999995 9999999998764 578887 555421  11111110   123322 1   122222110  003688888


Q ss_pred             EcCChHhH-HHHHHHHHHc-CCCeEEeCCCCCHHHHHHHHHHh--hhcCceEEEccCchHHHHHHHHH
Q 025154          112 DFTDASTV-YDNVKQATAF-GMRSVVYVPHIQLETVSALSAFC--DKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       112 DFT~p~~~-~~~~~~a~~~-Gi~vViGTTG~s~e~~~~L~~~a--~~~gipvl~spNfSlGvnll~~~  175 (257)
                      -.+.-+.. ...+..+.+. +.+-++..+.- .+. ....++.  ++.|+-.+++|..-.+-.++..+
T Consensus        71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~-~~~-~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l  136 (453)
T PRK09496         71 AVTDSDETNMVACQIAKSLFGAPTTIARVRN-PEY-AEYDKLFSKEALGIDLLISPELLVAREIARLI  136 (453)
T ss_pred             EecCChHHHHHHHHHHHHhcCCCeEEEEECC-ccc-cchhhhhhhhcCCccEEECHHHHHHHHHHHHh
Confidence            66643333 3333445554 55544444321 111 1223333  55678889999988777665443

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=94.58  E-value=0.28  Score=47.37  Aligned_cols=88  Identities=17%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHH---HHhccccCCCccE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV  109 (257)
                      .-||.|+|+ |..|+.+++.+.+++  +++++|.+|.+..  ..+.      ..|+++..+.++   .+++    .++|.
T Consensus       128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~--~~~~------~~gvpVlg~~~dl~~~i~~----~~vd~  194 (451)
T TIGR03023       128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPD--ARTG------VRGVPVLGKLDDLEELIRE----GEVDE  194 (451)
T ss_pred             CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCc--cccc------cCCCCccCCHHHHHHHHHh----cCCCE
Confidence            357999995 999999999987654  5899999984311  1111      246777655444   4443    67886


Q ss_pred             EEEcC---ChHhHHHHHHHHHHcCCCeEE
Q 025154          110 VIDFT---DASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       110 vIDFT---~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      ||...   ..+...+.+..|.+.|+.+.+
T Consensus       195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~v  223 (451)
T TIGR03023       195 VYIALPLAAEDRILELLDALEDLTVDVRL  223 (451)
T ss_pred             EEEeeCcccHHHHHHHHHHHHhcCCEEEE
Confidence            66443   234456778889999998775

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>PLN02206 UDP-glucuronate decarboxylase

Probab=94.53  E-value=0.26  Score=47.91  Aligned_cols=93  Identities=14%  Similarity=0.166  Sum_probs=55.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCc--chhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVv  110 (257)
                      .|||.|+|++|-+|+.+++.+.+ .+.++++. |....+.  .......   ..++..  .+-.+..+.      .+|+|
T Consensus       119 ~~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l-d~~~~~~~~~~~~~~~---~~~~~~i~~D~~~~~l~------~~D~V  187 (442)
T PLN02206        119 GLRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV-DNFFTGRKENVMHHFS---NPNFELIRHDVVEPILL------EVDQI  187 (442)
T ss_pred             CCEEEEECcccHHHHHHHHHHHH-CcCEEEEE-eCCCccchhhhhhhcc---CCceEEEECCccChhhc------CCCEE
Confidence            47999999999999999999875 47888764 4221111  1111110   112221  122333442      68999


Q ss_pred             EEcCC---h-------H--------hHHHHHHHHHHcCCCeEEeCC
Q 025154          111 IDFTD---A-------S--------TVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       111 IDFT~---p-------~--------~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      |.+..   |       .        .+...+.+|.+.|+++|.-.|
T Consensus       188 iHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS  233 (442)
T PLN02206        188 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST  233 (442)
T ss_pred             EEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence            98752   1       1        134567788888988874444

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.49  E-value=1.5  Score=42.11  Aligned_cols=142  Identities=15%  Similarity=0.176  Sum_probs=71.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-C-HHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVvIDF  113 (257)
                      .||.|+|+ |++|..+++.+. ..+.++++ +|....-.....+...  ..|+.++. . .+..+      .++|+||--
T Consensus         6 ~~~~v~G~-g~~G~~~a~~l~-~~g~~v~~-~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~------~~~d~vv~s   74 (445)
T PRK04308          6 KKILVAGL-GGTGISMIAYLR-KNGAEVAA-YDAELKPERVAQIGKM--FDGLVFYTGRLKDALD------NGFDILALS   74 (445)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHH------hCCCEEEEC
Confidence            48999995 999999988766 56787664 6642111111122100  13555532 2 22333      268988843


Q ss_pred             CC-hHhHHHHHHHHHHcCCCe-----------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154          114 TD-ASTVYDNVKQATAFGMRS-----------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (257)
Q Consensus       114 T~-p~~~~~~~~~a~~~Gi~v-----------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~  173 (257)
                      +. |.. .+.++.|.++|+|+                 +||-||-+-  --...|..+-+..|.......|+  |+.++.
T Consensus        75 pgi~~~-~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni--G~~~~~  151 (445)
T PRK04308         75 PGISER-QPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI--GTPVLE  151 (445)
T ss_pred             CCCCCC-CHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc--cHHHHH
Confidence            31 222 23444455555543                 244444321  11234555555555555666774  544333


Q ss_pred             HHHHHhcCCCCCeEEEecc
Q 025154          174 QAAISASFHYKNVEIVESR  192 (257)
Q Consensus       174 ~~a~~l~~~~~DiEIiE~H  192 (257)
                      .+.... +...|+-|+|.=
T Consensus       152 ~~~~~~-~~~~d~~VlE~~  169 (445)
T PRK04308        152 AELQRE-GKKADVWVLELS  169 (445)
T ss_pred             HHHhhc-CCCCcEEEEEeC
Confidence            222111 224578888854

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=94.47  E-value=0.56  Score=39.19  Aligned_cols=87  Identities=22%  Similarity=0.253  Sum_probs=54.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      ++.|+|+ |.+|+.+++.+. +.+++++|.+|.....  .+.     .-.|+|++.+.+++... . .....+++....+
T Consensus         1 ~~~I~Ga-g~~g~~~~~~l~-~~g~~vvgfid~~~~~--~~~-----~i~g~pvlg~~~~l~~~-~-~~~~~~iiai~~~   69 (201)
T TIGR03570         1 KLVIIGA-GGHGRVVADIAE-DSGWEIVGFLDDNPAL--QGT-----SVDGLPVLGGDEDLLRY-P-PDEVDLVVAIGDN   69 (201)
T ss_pred             CEEEEcC-CHHHHHHHHHHH-hCCCEEEEEEcCCccc--cCc-----ccCCccEECCHHHHhhh-c-ccccEEEEEcCCH
Confidence            5889996 999999999886 5689999999853210  111     12367777665554321 0 0122355555556


Q ss_pred             HhHHHHHHHHHHcCCCeE
Q 025154          117 STVYDNVKQATAFGMRSV  134 (257)
Q Consensus       117 ~~~~~~~~~a~~~Gi~vV  134 (257)
                      ....+.+..+.+.+..+.
T Consensus        70 ~~~~~i~~~l~~~g~~~~   87 (201)
T TIGR03570        70 KLRRRLFEKLKAKGYRFA   87 (201)
T ss_pred             HHHHHHHHHHHhCCCcce
Confidence            666677777777766543

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=94.46  E-value=0.44  Score=45.10  Aligned_cols=141  Identities=13%  Similarity=0.190  Sum_probs=82.6

Q ss_pred             CccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCC-c---E-EE--EEEecCCCCc--chhhh-----------hc
Q 025154           22 KRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-M---E-VA--GAIDSHSVGE--DIGMV-----------CD   81 (257)
Q Consensus        22 ~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~---e-Lv--g~vd~~~~g~--d~g~~-----------~g   81 (257)
                      +++...+..+..+++||+|+| +|+=|+++++.+.++-. +   + -|  ++++....|+  .+.++           -|
T Consensus         8 ~~~~~~~~~~~~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg   86 (372)
T KOG2711|consen    8 DESIRNLGKAERDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPG   86 (372)
T ss_pred             chhhhccCchhcCceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCC
Confidence            344445566667789999999 69999999998865421 1   0 11  1121111121  11111           12


Q ss_pred             CCCCCCeeeecCHHHHHhccccCCCccEEEEcCChHhH----HHHHHHHHHcCCCeEEeCCCCCHH-H---HHHHHHH--
Q 025154           82 MEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLE-T---VSALSAF--  151 (257)
Q Consensus        82 ~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~----~~~~~~a~~~Gi~vViGTTG~s~e-~---~~~L~~~--  151 (257)
                      ..-|.++...+|+.++..      ++|++| |-.|...    .+.+.-.++-+.+.|+-+-|+... +   +..+.+.  
T Consensus        87 ~~lP~NvvAv~dl~ea~~------dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~  159 (372)
T KOG2711|consen   87 IKLPENVVAVPDLVEAAK------DADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIH  159 (372)
T ss_pred             ccCCCCeEecchHHHHhc------cCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHH
Confidence            223456777889999884      799988 6655443    355666678888888777787632 1   1222222  


Q ss_pred             -hhhcCceEEEccCchHHHH
Q 025154          152 -CDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       152 -a~~~gipvl~spNfSlGvn  170 (257)
                       +-.-.+.+|-.||++-=|.
T Consensus       160 ~~lgI~~~vL~GaNiA~EVa  179 (372)
T KOG2711|consen  160 RALGIPCSVLMGANIASEVA  179 (372)
T ss_pred             HHhCCCceeecCCchHHHHH
Confidence             2222355777788776664

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.44  E-value=1  Score=43.69  Aligned_cols=138  Identities=14%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhhcCCCCCCeeee--cCHHHHHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~-g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVv  110 (257)
                      .||+|+| .|+.|+.+++.+. ..++++. +.|......  +. ..+.    ..|+.++  .+..+.+.      ++|+|
T Consensus        15 ~~i~v~G-~G~sG~a~a~~L~-~~G~~V~-~~D~~~~~~~~~~~~~l~----~~gi~~~~~~~~~~~~~------~~dlV   81 (458)
T PRK01710         15 KKVAVVG-IGVSNIPLIKFLV-KLGAKVT-AFDKKSEEELGEVSNELK----ELGVKLVLGENYLDKLD------GFDVI   81 (458)
T ss_pred             CeEEEEc-ccHHHHHHHHHHH-HCCCEEE-EECCCCCccchHHHHHHH----hCCCEEEeCCCChHHhc------cCCEE
Confidence            4899999 5999999998776 5677755 477421111  10 1121    3455543  22334343      68977


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~  174 (257)
                      |--..-....+.+..|.+.|+|++              ||-||-+-  --.+.|..+-++.+.......|  +|+.++..
T Consensus        82 V~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn--iG~p~~~~  159 (458)
T PRK01710         82 FKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFSN  159 (458)
T ss_pred             EECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc--cChhHHHH
Confidence            743211122345566666665544              34444211  1123444444555555566778  56665543


Q ss_pred             HHHHhcCCCCCeEEEec
Q 025154          175 AAISASFHYKNVEIVES  191 (257)
Q Consensus       175 ~a~~l~~~~~DiEIiE~  191 (257)
                      +. ...  ..|+-|+|+
T Consensus       160 ~~-~~~--~~~~~VlE~  173 (458)
T PRK01710        160 IE-EIK--EEDKVVLEL  173 (458)
T ss_pred             Hh-hCC--CCCEEEEEc
Confidence            32 222  356777774

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.36  E-value=0.69  Score=44.59  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=25.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ++||+|+| .|.||..++..+++ .++++.+ +|.
T Consensus         3 ~~kI~VIG-lG~~G~~~A~~La~-~G~~V~~-~D~   34 (415)
T PRK11064          3 FETISVIG-LGYIGLPTAAAFAS-RQKQVIG-VDI   34 (415)
T ss_pred             ccEEEEEC-cchhhHHHHHHHHh-CCCEEEE-EeC
Confidence            57999999 59999999998774 5788765 564

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.36  E-value=0.59  Score=45.78  Aligned_cols=138  Identities=22%  Similarity=0.175  Sum_probs=77.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe-cCCC-CcchhhhhcCCCCCCeeeec--CHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSV-GEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~-g~d~g~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVv  110 (257)
                      ++||+|+| .|+-|+.+++.+.+ .+.++. +.| ++.. +......    ...++.+..  ...+-+      ..+|+|
T Consensus         7 ~~kv~V~G-LG~sG~a~a~~L~~-~G~~v~-v~D~~~~~~~~~~~~~----~~~~i~~~~g~~~~~~~------~~~d~v   73 (448)
T COG0771           7 GKKVLVLG-LGKSGLAAARFLLK-LGAEVT-VSDDRPAPEGLAAQPL----LLEGIEVELGSHDDEDL------AEFDLV   73 (448)
T ss_pred             CCEEEEEe-cccccHHHHHHHHH-CCCeEE-EEcCCCCccchhhhhh----hccCceeecCccchhcc------ccCCEE
Confidence            67999999 69999999998774 566555 566 3221 1111111    123444321  111222      368987


Q ss_pred             EEcCC--hHhHHHHHHHHHHcCCCe---------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          111 IDFTD--ASTVYDNVKQATAFGMRS---------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       111 IDFT~--p~~~~~~~~~a~~~Gi~v---------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      | .|+  |..+. .+..|.+.|+++               +|+-||-+-  -.-..|..+.++.|...+++.|....+  
T Consensus        74 V-~SPGi~~~~p-~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~--  149 (448)
T COG0771          74 V-KSPGIPPTHP-LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA--  149 (448)
T ss_pred             E-ECCCCCCCCH-HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH--
Confidence            7 442  22221 444444444433               344454321  234578888999999999999987776  


Q ss_pred             HHHHHHHhcCCCCCeEEEecc
Q 025154          172 LQQAAISASFHYKNVEIVESR  192 (257)
Q Consensus       172 l~~~a~~l~~~~~DiEIiE~H  192 (257)
                      ++.+.+ .  ..+|+-++|.-
T Consensus       150 l~~~~~-~--~~~d~~VlElS  167 (448)
T COG0771         150 LELLEQ-A--EPADVYVLELS  167 (448)
T ss_pred             HHhhcc-c--CCCCEEEEEcc
Confidence            433332 1  35677777743

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=94.33  E-value=0.13  Score=48.03  Aligned_cols=92  Identities=11%  Similarity=0.021  Sum_probs=60.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..+++|+| +|.||+.+++.+.....++-+.++++..  ..+..+...-...+  +.+++|.++++.      ++||||-
T Consensus       128 ~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~--~~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVit  198 (325)
T TIGR02371       128 SSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTP--STREKFALRASDYEVPVRAATDPREAVE------GCDILVT  198 (325)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEE
Confidence            35899999 5999999999888777888888888642  11112211001233  566889999985      7999987


Q ss_pred             cCChHhHHHHH-HHHHHcCCCeE-EeC
Q 025154          113 FTDASTVYDNV-KQATAFGMRSV-VYV  137 (257)
Q Consensus       113 FT~p~~~~~~~-~~a~~~Gi~vV-iGT  137 (257)
                      .|. +.. +++ ...++-|.++. ||+
T Consensus       199 aT~-s~~-P~~~~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       199 TTP-SRK-PVVKADWVSEGTHINAIGA  223 (325)
T ss_pred             ecC-CCC-cEecHHHcCCCCEEEecCC
Confidence            763 221 222 33468898876 664

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=94.32  E-value=0.21  Score=50.73  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=28.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      ++||.|.|++|-+|+.+++.+.++.++++++..
T Consensus       315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~  347 (660)
T PRK08125        315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD  347 (660)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence            578999999999999999998866678998764

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.31  E-value=0.18  Score=46.83  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=25.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .+||+|+|| |.||..++..+....-.+ +..+|.
T Consensus         5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di   37 (319)
T PTZ00117          5 RKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDV   37 (319)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEEC
Confidence            469999997 999999998776543246 667785

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.31  E-value=0.25  Score=43.85  Aligned_cols=98  Identities=24%  Similarity=0.292  Sum_probs=61.8

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhc-CCcEEEEE--EecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCcc
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA--IDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARA  108 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~--vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~D  108 (257)
                      .++.||+|+| +|.+|.-+.--+..+ ..+|..+.  +|+...|.  ...    .++|++.+. -++-++.. -.-.+.|
T Consensus         2 ~sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdgl--ara----arlgv~tt~egv~~ll~~-p~~~di~   73 (310)
T COG4569           2 SSKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGL--ARA----ARLGVATTHEGVIGLLNM-PEFADID   73 (310)
T ss_pred             CCcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHH--HHH----HhcCCcchhhHHHHHHhC-CCCCCcc
Confidence            4678999999 799998765545544 44554433  45432221  111    145665432 23444431 0002345


Q ss_pred             EEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       109 VvIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      .|.|.|+.-++.+++..+.+.|++++==|+
T Consensus        74 lvfdatsa~~h~~~a~~~ae~gi~~idltp  103 (310)
T COG4569          74 LVFDATSAGAHVKNAAALAEAGIRLIDLTP  103 (310)
T ss_pred             eEEeccccchhhcchHhHHhcCCceeecch
Confidence            899999999999999999999999885554

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.26  E-value=0.27  Score=44.49  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=52.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC-----C--CCCCeeeecCHHHHHhccccCCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM-----E--QPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--g~-----~--~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      |||+|+|+ |.||..++..+.+. +.++..+ ++.   .....+.  +.     .  ......+.++.+++..      .
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~-g~~V~~~-~r~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~   68 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEA-GRDVTFL-VRP---KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG------P   68 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHC-CCceEEE-ecH---HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC------C
Confidence            68999996 99999999988754 5665543 321   1111110  00     0  0001123455655543      7


Q ss_pred             ccEEEEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCH
Q 025154          107 RAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL  142 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~  142 (257)
                      +|++|-.+.+..+.+.+...   +..+..+|+-..|+..
T Consensus        69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~  107 (305)
T PRK12921         69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ  107 (305)
T ss_pred             CCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence            89988777655454444433   3345555555568864

>PRK12320 hypothetical protein; Provisional

Probab=94.22  E-value=0.32  Score=50.12  Aligned_cols=83  Identities=18%  Similarity=0.290  Sum_probs=51.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eec-----CHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMS-----DLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~-----dl~~~l~~~~~~~~~DV  109 (257)
                      |||.|+|++|.+|+.+++.+.+ .+.++.+......   +.   .    ..++. +..     .+.+++.      ++|+
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~---~~---~----~~~ve~v~~Dl~d~~l~~al~------~~D~   63 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPH---DA---L----DPRVDYVCASLRNPVLQELAG------EADA   63 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChh---hc---c----cCCceEEEccCCCHHHHHHhc------CCCE
Confidence            5899999999999999998875 5788876543211   00   0    00111 111     1333442      6899


Q ss_pred             EEEcCChH----------hHHHHHHHHHHcCCCeEE
Q 025154          110 VIDFTDAS----------TVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       110 vIDFT~p~----------~~~~~~~~a~~~Gi~vVi  135 (257)
                      ||.+....          .+...+..|.+.|+.+|.
T Consensus        64 VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~   99 (699)
T PRK12320         64 VIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLF   99 (699)
T ss_pred             EEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEE
Confidence            99986421          133456778888888774

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.19  E-value=0.23  Score=44.67  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=26.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r   32 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVR   32 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHC-CCEEEEEEe
Confidence            47999999999999999988754 677776543

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.19  E-value=0.29  Score=46.06  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=27.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .+||.|.|++|-.|+.+++.+.+ .+.++.++.
T Consensus        21 ~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~   52 (370)
T PLN02695         21 KLRICITGAGGFIASHIARRLKA-EGHYIIASD   52 (370)
T ss_pred             CCEEEEECCccHHHHHHHHHHHh-CCCEEEEEE
Confidence            57999999999999999999875 478887754

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.18  E-value=0.24  Score=46.39  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=42.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++. ++|+..  .....     ...++. +.++++++.      .+|+|+-..
T Consensus       150 gktvgIiG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~--~~~~~-----~~~~~~-~~~l~ell~------~aDiV~l~l  212 (333)
T PRK13243        150 GKTIGIIG-FGRIGQAVARRAK-GFGMRIL-YYSRTR--KPEAE-----KELGAE-YRPLEELLR------ESDFVSLHV  212 (333)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCC--ChhhH-----HHcCCE-ecCHHHHHh------hCCEEEEeC
Confidence            36899999 5999999999876 4578876 567532  11110     022333 468999985      799888554

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=94.14  E-value=0.45  Score=42.34  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=24.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcC-CcEEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~   66 (257)
                      ||.|+|++|.+|+.+++.+.+.. +.++++.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~   31 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL   31 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence            68999999999999999987654 4777653

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.12  E-value=0.29  Score=48.55  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=25.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -||+|+|+ |.||+.|+..++ ..+++++ ++|.
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la-~aG~~V~-l~D~   38 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAA-QAGHTVL-LYDA   38 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCeEE-EEeC
Confidence            47999996 999999999876 4588876 5664

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=94.10  E-value=0.34  Score=43.72  Aligned_cols=124  Identities=19%  Similarity=0.242  Sum_probs=73.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----e---cCHHHHHhccccCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~---~dl~~~l~~~~~~~~  106 (257)
                      .|++|.|.|.| .=|+.+++.+.+. +..+..-+.... |. ..       ..++++    .   +++.+.+.+    .+
T Consensus         1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~~-g~-~~-------~~~~~v~~G~l~~~~~l~~~l~~----~~   65 (248)
T PRK08057          1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGRT-GG-PA-------DLPGPVRVGGFGGAEGLAAYLRE----EG   65 (248)
T ss_pred             CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccCC-CC-cc-------cCCceEEECCCCCHHHHHHHHHH----CC
Confidence            36789999975 6789999887644 676655444321 22 11       122222    2   345555544    78


Q ss_pred             ccEEEEcCChHhH---HHHHHHHHHcCCCeE-EeCCCCCH---------HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154          107 RAVVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL---------ETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (257)
Q Consensus       107 ~DVvIDFT~p~~~---~~~~~~a~~~Gi~vV-iGTTG~s~---------e~~~~L~~~a~~~gipvl~spNfSlGvnll~  173 (257)
                      +++|||.|||-+.   ......|.+.|+|.+ ..=+.|..         +..+++.+++.+. -.||    +++|.+-+.
T Consensus        66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~-~~vl----lttGsk~l~  140 (248)
T PRK08057         66 IDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF-RRVL----LTTGRQPLA  140 (248)
T ss_pred             CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc-CCEE----EecCcchHH
Confidence            9999999998554   455688889999987 33233311         1222333333333 2566    378887666


Q ss_pred             HHHH
Q 025154          174 QAAI  177 (257)
Q Consensus       174 ~~a~  177 (257)
                      .+..
T Consensus       141 ~f~~  144 (248)
T PRK08057        141 HFAA  144 (248)
T ss_pred             HHhh
Confidence            6653

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=94.05  E-value=0.5  Score=46.31  Aligned_cols=118  Identities=13%  Similarity=0.132  Sum_probs=74.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---h-----------cCCC-CCCeeeecCH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---C-----------DMEQ-PLEIPVMSDL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~---~-----------g~~~-~~gv~v~~dl   94 (257)
                      ..||+|.| .|.+|+..++.+. +.+.+++++.|+.     ..|-|..++   .           +... ..+.... +.
T Consensus       237 Gk~VaVqG-~GnVg~~aa~~L~-e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~  313 (454)
T PTZ00079        237 GKTVVVSG-SGNVAQYAVEKLL-QLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PG  313 (454)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CC
Confidence            36999999 5999999999886 5699999999953     335554443   1           0000 0122222 23


Q ss_pred             HHHHhccccCCCccEEEEcCChH-hHHHHHHHHHHcCCCeEEeCCC--CCHHHHHHHHHHhhhcCceEEEccCch
Q 025154           95 TMVLGSISQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT~p~-~~~~~~~~a~~~Gi~vViGTTG--~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      ++++.     .++||++=+.... -..+++...++++..+|++-..  .+++..+.|   .++   .|+|.|-+.
T Consensus       314 ~~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L---~~~---GI~~~PD~~  377 (454)
T PTZ00079        314 KKPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF---KKN---GVIFCPGKA  377 (454)
T ss_pred             cCccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH---HHC---CcEEEChhh
Confidence            44554     4799988765433 3367788888999999998662  344333333   233   567667654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.04  E-value=0.26  Score=47.94  Aligned_cols=101  Identities=14%  Similarity=0.094  Sum_probs=56.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .-+|+|+| +|.+|+.+++.+.. -+.+++ ++|... .+ ..+..    ..|..+ .++++++.      .+||+|++|
T Consensus       212 Gk~VlViG-~G~IG~~vA~~lr~-~Ga~Vi-V~d~dp-~r-a~~A~----~~G~~v-~~l~eal~------~aDVVI~aT  275 (425)
T PRK05476        212 GKVVVVAG-YGDVGKGCAQRLRG-LGARVI-VTEVDP-IC-ALQAA----MDGFRV-MTMEEAAE------LGDIFVTAT  275 (425)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CCCEEE-EEcCCc-hh-hHHHH----hcCCEe-cCHHHHHh------CCCEEEECC
Confidence            35899999 59999999998764 467744 455321 01 01100    123333 36777774      799999998


Q ss_pred             ChHhHHH-HHHHHHHcCCCeEEeCCCCC-HHHHHHHHHHh
Q 025154          115 DASTVYD-NVKQATAFGMRSVVYVPHIQ-LETVSALSAFC  152 (257)
Q Consensus       115 ~p~~~~~-~~~~a~~~Gi~vViGTTG~s-~e~~~~L~~~a  152 (257)
                      -.....+ .....++.|.-++... .++ +-+.+.|++.+
T Consensus       276 G~~~vI~~~~~~~mK~GailiNvG-~~d~Eid~~~L~~~~  314 (425)
T PRK05476        276 GNKDVITAEHMEAMKDGAILANIG-HFDNEIDVAALEELA  314 (425)
T ss_pred             CCHHHHHHHHHhcCCCCCEEEEcC-CCCCccChHHHhhcC
Confidence            5443333 3444455654444322 222 22334455553

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=94.02  E-value=0.48  Score=41.90  Aligned_cols=91  Identities=15%  Similarity=0.104  Sum_probs=49.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ||+++|.| +|.||..+++.+. ..++|++=+-.+.   .+.-+.+.  +.++..+ -.+.+++.+      ..|||+-.
T Consensus         1 m~~~~i~G-tGniG~alA~~~a-~ag~eV~igs~r~---~~~~~a~a--~~l~~~i~~~~~~dA~~------~aDVVvLA   67 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLA-KAGHEVIIGSSRG---PKALAAAA--AALGPLITGGSNEDAAA------LADVVVLA   67 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHH-hCCCeEEEecCCC---hhHHHHHH--HhhccccccCChHHHHh------cCCEEEEe
Confidence            78999999 6999999999877 4578876443221   11111000  1112222 234455553      68998844


Q ss_pred             CChHhHHHHHHHHHH-cCCCeEEeCC
Q 025154          114 TDASTVYDNVKQATA-FGMRSVVYVP  138 (257)
Q Consensus       114 T~p~~~~~~~~~a~~-~Gi~vViGTT  138 (257)
                      .+-+...+.+..... .+=.+||-+|
T Consensus        68 VP~~a~~~v~~~l~~~~~~KIvID~t   93 (211)
T COG2085          68 VPFEAIPDVLAELRDALGGKIVIDAT   93 (211)
T ss_pred             ccHHHHHhHHHHHHHHhCCeEEEecC
Confidence            444555555544432 4333444444

>PRK14030 glutamate dehydrogenase; Provisional

Probab=94.00  E-value=0.32  Score=47.53  Aligned_cols=117  Identities=14%  Similarity=0.112  Sum_probs=73.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcCC-----------CCC-CeeeecCHH
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-----------QPL-EIPVMSDLT   95 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~---~g~~-----------~~~-gv~v~~dl~   95 (257)
                      .||+|.| .|.+|+..++.+. +.+.+|+++.|+.     ..|-|...+   ....           ..+ +.... +.+
T Consensus       229 ~~vaIQG-fGnVG~~aA~~L~-e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~  305 (445)
T PRK14030        229 KTVAISG-FGNVAWGAATKAT-ELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGK  305 (445)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCc
Confidence            6999999 5999999999886 5799999988742     335554432   1000           011 22222 345


Q ss_pred             HHHhccccCCCccEEEEcCCh-HhHHHHHHHHHHcCCCeEEeCC-CC-CHHHHHHHHHHhhhcCceEEEccCch
Q 025154           96 MVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP-HI-QLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus        96 ~~l~~~~~~~~~DVvIDFT~p-~~~~~~~~~a~~~Gi~vViGTT-G~-s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      +++.     .++||+|=+... .-..+++....+++..+|++-. +. ++|..+.|    +++  .|++.|-+.
T Consensus       306 ~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL----~~r--GI~~vPD~~  368 (445)
T PRK14030        306 KPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKF----IAA--KQLFAPGKA  368 (445)
T ss_pred             ccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH----HHC--CCEEeCcce
Confidence            5665     489999976543 3346788888888999999876 43 33322223    333  456656554

>PRK05086 malate dehydrogenase; Provisional

Probab=93.94  E-value=0.64  Score=43.18  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=25.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~   69 (257)
                      |||+|+||+|++|+.++..+.. .+....+..+|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~   35 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI   35 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEec
Confidence            6999999999999999987754 334444455664

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.94  E-value=0.5  Score=47.68  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=26.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      -.|.|.|++|++|+.+++.+++ .++++++...
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk-~G~~Vval~R  112 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLK-LGFRVRAGVR  112 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeC
Confidence            3699999999999999998875 5888877653

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.87  E-value=0.3  Score=47.31  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=25.7

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ++|||+|+| +|.||.-++..+++  ++++++ +|.
T Consensus         5 ~~mkI~vIG-lGyvGlpmA~~la~--~~~V~g-~D~   36 (425)
T PRK15182          5 DEVKIAIIG-LGYVGLPLAVEFGK--SRQVVG-FDV   36 (425)
T ss_pred             CCCeEEEEC-cCcchHHHHHHHhc--CCEEEE-EeC
Confidence            358999999 79999999988664  588775 664

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.85  E-value=0.39  Score=41.81  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=25.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..||+|+|+ |.||..++..+.. .++.=+-++|.
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~-~Gvg~i~lvD~   53 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLAR-AGIGKLILVDF   53 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEECC
Confidence            358999996 9999999998874 57754446764

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.75  E-value=0.43  Score=45.40  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=28.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ++||.|+|++|.+|+.+++.+.+ .+.++++..-
T Consensus        60 ~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R   92 (390)
T PLN02657         60 DVTVLVVGATGYIGKFVVRELVR-RGYNVVAVAR   92 (390)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEe
Confidence            57999999999999999998875 5788887653

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.72  E-value=0.2  Score=46.62  Aligned_cols=71  Identities=21%  Similarity=0.203  Sum_probs=41.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      .+||+|+|+ |.+|..++-.+....-..=...+|...   .|.  |............+..+.|+++ +      .++|+
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~------~~adi   74 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T------ANSKV   74 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h------CCCCE
Confidence            359999996 999999998777554443344677431   121  2222111100123444578887 4      37998


Q ss_pred             EEEc
Q 025154          110 VIDF  113 (257)
Q Consensus       110 vIDF  113 (257)
                      ||-+
T Consensus        75 vvit   78 (312)
T cd05293          75 VIVT   78 (312)
T ss_pred             EEEC
Confidence            8864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=93.69  E-value=0.39  Score=40.91  Aligned_cols=143  Identities=11%  Similarity=0.145  Sum_probs=71.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      .+|+|+| +|..|++++..+. +.+++++-...+....++..+      .-|..++ +++++..      .+|||+-.+ 
T Consensus         5 k~IAViG-yGsQG~a~AlNLr-DSG~~V~Vglr~~s~s~~~A~------~~Gf~v~-~~~eAv~------~aDvV~~L~-   68 (165)
T PF07991_consen    5 KTIAVIG-YGSQGHAHALNLR-DSGVNVIVGLREGSASWEKAK------ADGFEVM-SVAEAVK------KADVVMLLL-   68 (165)
T ss_dssp             SEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTCHHHHHHH------HTT-ECC-EHHHHHH------C-SEEEE-S-
T ss_pred             CEEEEEC-CChHHHHHHHHHH-hCCCCEEEEecCCCcCHHHHH------HCCCeec-cHHHHHh------hCCEEEEeC-
Confidence            5899999 6999999999876 678888766654211111111      2344443 6677775      799877554 


Q ss_pred             hHhH-----HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHHHHHHHHHHHHhcCCCCCeEEE
Q 025154          116 ASTV-----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSILLQQAAISASFHYKNVEIV  189 (257)
Q Consensus       116 p~~~-----~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlGvnll~~~a~~l~~~~~DiEIi  189 (257)
                      |+..     .+.+...++-|.-++ =..||+- ....|+--   .++-++ ++|- +.|..+=+.+.+   +.+.- -.+
T Consensus        69 PD~~q~~vy~~~I~p~l~~G~~L~-fahGfni-~~~~i~pp---~~vdV~mvAPK-gpG~~vR~~y~~---G~Gvp-~l~  138 (165)
T PF07991_consen   69 PDEVQPEVYEEEIAPNLKPGATLV-FAHGFNI-HYGLIKPP---KDVDVIMVAPK-GPGHLVRREYVE---GRGVP-ALI  138 (165)
T ss_dssp             -HHHHHHHHHHHHHHHS-TT-EEE-ESSSHHH-HCTTS------TTSEEEEEEES-SSCHHHHHHHHC---CTS---EEE
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEE-eCCcchh-hcCcccCC---CCCeEEEEecC-CCChHHHHHHHc---CCCce-EEE
Confidence            4333     345555667777554 3567764 22333321   225555 4554 446654333331   11111 112


Q ss_pred             eccCCCCCCCCCccHHHHHH
Q 025154          190 ESRPNARVRYMTRTLISMQV  209 (257)
Q Consensus       190 E~HH~~K~DapSGTa~~l~~  209 (257)
                      =.|    . -+||.|.+++.
T Consensus       139 AV~----q-D~sg~A~~~al  153 (165)
T PF07991_consen  139 AVH----Q-DASGKAKELAL  153 (165)
T ss_dssp             EEE----E--SSS-HHHHHH
T ss_pred             EEE----E-CCCchHHHHHH
Confidence            222    2 25788888864

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=93.68  E-value=0.44  Score=44.65  Aligned_cols=60  Identities=15%  Similarity=0.225  Sum_probs=41.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++|+|+| +|+||+.+++.+. .-++++.+ +|+.. .....         .+...++++++++      .+|+|+...
T Consensus       147 ~~VgIIG-~G~IG~~vA~~L~-~~G~~V~~-~d~~~-~~~~~---------~~~~~~~l~ell~------~aDiVil~l  206 (330)
T PRK12480        147 MTVAIIG-TGRIGAATAKIYA-GFGATITA-YDAYP-NKDLD---------FLTYKDSVKEAIK------DADIISLHV  206 (330)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-EeCCh-hHhhh---------hhhccCCHHHHHh------cCCEEEEeC
Confidence            5899999 5999999999876 46888875 56431 00000         1223468899985      799888554

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.68  E-value=0.66  Score=44.76  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=69.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhhhcCCCCCC-eeeecCHHHHHhcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSI  101 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-------------~~~g~d~g~~~g~~~~~g-v~v~~dl~~~l~~~  101 (257)
                      |||.|+| +|-.|-.....++ +-+++++++ |.             +-....+.+++......| ...++|+++++.  
T Consensus         1 MkI~viG-tGYVGLv~g~~lA-~~GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~--   75 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLA-ELGHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK--   75 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHH-HcCCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence            7999999 6999999887665 557888864 41             111112333332111122 677889998885  


Q ss_pred             ccCCCccEEEEcC-Ch------------HhHHHHHHHHHHcCCCeEEeC-C---CCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          102 SQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYV-P---HIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       102 ~~~~~~DVvIDFT-~p------------~~~~~~~~~a~~~Gi~vViGT-T---G~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                          ..||++..+ +|            +++.+.+..++... ++|+.+ |   |++++-.+.+.+........|+++|=
T Consensus        76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~-~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPE  150 (414)
T COG1004          76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGK-AVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPE  150 (414)
T ss_pred             ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCC-eEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChH
Confidence                789877764 22            12222333333333 566554 3   77776555565555443455666666


Q ss_pred             c
Q 025154          165 L  165 (257)
Q Consensus       165 f  165 (257)
                      |
T Consensus       151 F  151 (414)
T COG1004         151 F  151 (414)
T ss_pred             H
Confidence            5

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=93.68  E-value=0.52  Score=42.85  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=23.7

Q ss_pred             EEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .|+|++|-+|+.+++.+.++....=|-++|.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~   31 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDR   31 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence            3899999999999999997765333445663

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.62  E-value=1.9  Score=41.51  Aligned_cols=135  Identities=14%  Similarity=0.151  Sum_probs=71.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeeeec--CHHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~-~gv~v~~--dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      -|+|+|. |+.|..+++.+. ..+.++. +.|..........+.   .. .|+.++.  ...+.+.      ++|+||--
T Consensus         8 ~~~v~G~-G~sG~s~a~~L~-~~G~~v~-~~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~------~~d~vV~s   75 (448)
T PRK03803          8 LHIVVGL-GKTGLSVVRFLA-RQGIPFA-VMDSREQPPGLDTLA---REFPDVELRCGGFDCELLV------QASEIIIS   75 (448)
T ss_pred             eEEEEee-cHhHHHHHHHHH-hCCCeEE-EEeCCCCchhHHHHH---hhcCCcEEEeCCCChHHhc------CCCEEEEC
Confidence            5899995 999999888765 5688765 477432111112221   11 2666632  1233443      68877743


Q ss_pred             C-ChHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154          114 T-DASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (257)
Q Consensus       114 T-~p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a  176 (257)
                      + .|.. .+.+..|.++|+|++              |+-||-+-  --...|..+-++.|..++...|+  |..++..+ 
T Consensus        76 p~i~~~-~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggni--g~p~~~~~-  151 (448)
T PRK03803         76 PGLALD-TPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNI--GTPALDLL-  151 (448)
T ss_pred             CCCCCC-CHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCc--CHHHHHHh-
Confidence            3 1222 234444555555543              34454321  11234555556666778888885  44433221 


Q ss_pred             HHhcCCCCCeEEEec
Q 025154          177 ISASFHYKNVEIVES  191 (257)
Q Consensus       177 ~~l~~~~~DiEIiE~  191 (257)
                         .+ ..|+-|+|.
T Consensus       152 ---~~-~~~~~V~E~  162 (448)
T PRK03803        152 ---SD-DPELYVLEL  162 (448)
T ss_pred             ---cC-CCCEEEEEc
Confidence               21 346667774

>PRK05693 short chain dehydrogenase; Provisional

Probab=93.60  E-value=0.68  Score=40.93  Aligned_cols=78  Identities=23%  Similarity=0.288  Sum_probs=49.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      |.++.|+|++|.+|+.+++.+.+ .+.+++.. ++..  ...                  +++.+     ...+ +..|.
T Consensus         1 mk~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~~------------------~~~~~-----~~~~~~~~Dl   53 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKA-AGYEVWAT-ARKA--EDV------------------EALAA-----AGFTAVQLDV   53 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HHH------------------HHHHH-----CCCeEEEeeC
Confidence            45799999999999999998874 57887754 3321  111                  11111     1233 34678


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      +.++...+.+..+.+.  ++.+|+=..|
T Consensus        54 ~~~~~~~~~~~~~~~~~~~id~vi~~ag   81 (274)
T PRK05693         54 NDGAALARLAEELEAEHGGLDVLINNAG   81 (274)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            8877777776666443  4677766655

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.60  E-value=0.35  Score=42.74  Aligned_cols=159  Identities=20%  Similarity=0.228  Sum_probs=90.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee---e-cCHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M-SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v---~-~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |+++|+|+ |++|..+++.+. ..+.+++.+-..+   ....+...  ...++.+   . .+.+ +|.+. --.++|++|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~-~~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~-~L~~a-gi~~aD~vv   71 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELS-EEGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDED-VLEEA-GIDDADAVV   71 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHH-hCCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHH-HHHhc-CCCcCCEEE
Confidence            68999996 999999999887 4577777655422   11111111  0122222   1 2333 33221 013689888


Q ss_pred             EcCChHhHH-HHHHHH-HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH----HHhcCCC-C
Q 025154          112 DFTDASTVY-DNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA----ISASFHY-K  184 (257)
Q Consensus       112 DFT~p~~~~-~~~~~a-~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a----~~l~~~~-~  184 (257)
                      =.|.-+... -....+ .+.|+|-|+...- +++..+.+    ++-|+-.+++|=...|-.+...+.    ..+.... -
T Consensus        72 a~t~~d~~N~i~~~la~~~~gv~~viar~~-~~~~~~~~----~~~g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~~~~~  146 (225)
T COG0569          72 AATGNDEVNSVLALLALKEFGVPRVIARAR-NPEHEKVL----EKLGADVIISPEKLAAKRLARLIVTPGALDVLELAGG  146 (225)
T ss_pred             EeeCCCHHHHHHHHHHHHhcCCCcEEEEec-CHHHHHHH----HHcCCcEEECHHHHHHHHHHHHhcCCChheEEeecCC
Confidence            666543332 223333 3489999987764 23333333    334467888888888876654432    1111111 1


Q ss_pred             CeEEEeccCCCCCCCCCccHHHHH
Q 025154          185 NVEIVESRPNARVRYMTRTLISMQ  208 (257)
Q Consensus       185 DiEIiE~HH~~K~DapSGTa~~l~  208 (257)
                      +.+++|..=....--.+-|..++.
T Consensus       147 ~~~~~~~~v~~~~~~~g~~L~el~  170 (225)
T COG0569         147 DAEVIEEKVAEDSPLAGKTLRELD  170 (225)
T ss_pred             cceEEEEEecCCCccCCcCHHHhc
Confidence            688888766655446777887776

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.51  E-value=0.18  Score=47.24  Aligned_cols=115  Identities=12%  Similarity=0.151  Sum_probs=68.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEE--EEec--CCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAG--AIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg--~vd~--~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      .++|+| ||||-.|+.+.+.+. +.++.+--  .+.+  ...|+.+. +.    ...+.+..=-++.+      .++|++
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Le-er~fpv~~l~l~~s~~~s~gk~i~-f~----g~~~~V~~l~~~~f------~~vDia   69 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALE-QSDLEIEQISIVEIEPFGEEQGIR-FN----NKAVEQIAPEEVEW------ADFNYV   69 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHH-hcCCchhheeecccccccCCCEEE-EC----CEEEEEEECCccCc------ccCCEE
Confidence            479999 999999999999765 45554331  1111  12232221 11    11233322112233      279988


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCCC-------------CCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVPH-------------IQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTTG-------------~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      + |+..+.+.+.+..+.+.|..||-=+.-             .++|.++.++    +  -.++-.||=|.=.
T Consensus        70 ~-fag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~----~--~~IIanPNCsTi~  134 (322)
T PRK06901         70 F-FAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELR----Q--RNIVSLPDPQVSQ  134 (322)
T ss_pred             E-EcCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCc----C--CCEEECCcHHHHH
Confidence            8 577788889999999998877754433             3555433332    2  2488899977544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=93.51  E-value=0.19  Score=46.60  Aligned_cols=88  Identities=10%  Similarity=0.098  Sum_probs=53.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC--CCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~--~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .+|+|+| +|.||+.+++.+....+.+=+-++++..  ..+..++..-..  ..+.+.+++++++.      ++||||-.
T Consensus       126 ~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av~------~aDIVi~a  196 (314)
T PRK06141        126 SRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAVR------QADIISCA  196 (314)
T ss_pred             ceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHHh------cCCEEEEe
Confidence            5899999 5999999998776544555555676531  112222211001  13666789988885      79998766


Q ss_pred             CChHhHHHHH-HHHHHcCCCeE
Q 025154          114 TDASTVYDNV-KQATAFGMRSV  134 (257)
Q Consensus       114 T~p~~~~~~~-~~a~~~Gi~vV  134 (257)
                      |...  ...+ ...++.|.++.
T Consensus       197 T~s~--~pvl~~~~l~~g~~i~  216 (314)
T PRK06141        197 TLST--EPLVRGEWLKPGTHLD  216 (314)
T ss_pred             eCCC--CCEecHHHcCCCCEEE
Confidence            6422  1211 23457787554

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=93.50  E-value=0.53  Score=42.15  Aligned_cols=30  Identities=27%  Similarity=0.566  Sum_probs=23.2

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      |.|+|++|-+|+.+++.+.+. +. +++ ++++
T Consensus         1 ilItGatG~iG~~l~~~L~~~-g~~~v~-~~~~   31 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNER-GITDIL-VVDN   31 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHc-CCceEE-EEec
Confidence            579999999999999998865 55 554 4453

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=93.34  E-value=0.29  Score=44.53  Aligned_cols=126  Identities=17%  Similarity=0.169  Sum_probs=73.1

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCH-----HHHHhccccCCC
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-----TMVLGSISQSKA  106 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl-----~~~l~~~~~~~~  106 (257)
                      +..++||++.||.|-.|+.+++++..+|-+|+.-+..+...|+....+.    +..+. |.|+     -.+.+    ...
T Consensus        16 ~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~yt----k~eiq-y~~lst~D~~klee----~~a   86 (340)
T KOG4354|consen   16 PEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYT----KLEIQ-YADLSTVDAVKLEE----PHA   86 (340)
T ss_pred             cCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcc----hhhee-ecccchhhHHHhhc----CCc
Confidence            3457999999999999999999999999999987776555555443221    11111 2222     22222    123


Q ss_pred             ccEEEEcCChHhHHHHHHHHH--HcCCCeEE----------------eCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154          107 RAVVIDFTDASTVYDNVKQAT--AFGMRSVV----------------YVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~--~~Gi~vVi----------------GTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG  168 (257)
                      .|-++ |..|..+..-...++  .+|+..+|                |-|.+++  .+.|+.+.+-++ |-.|+..-.++
T Consensus        87 vd~wv-maLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElnd--Re~i~na~~iaN-PGCYaTgsQl~  162 (340)
T KOG4354|consen   87 VDHWV-MALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELND--REDIKNARLIAN-PGCYATGSQLP  162 (340)
T ss_pred             eeeee-eecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCccccc--HHHHhhhhhccC-CCcccccCccc
Confidence            34433 677766644332222  24444443                3344432  456777665444 66676666666


Q ss_pred             HH
Q 025154          169 SI  170 (257)
Q Consensus       169 vn  170 (257)
                      ..
T Consensus       163 l~  164 (340)
T KOG4354|consen  163 LV  164 (340)
T ss_pred             ch
Confidence            54

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=93.29  E-value=0.78  Score=35.90  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=21.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |||.|+| +|.=-.+++..+.+++..+-+.+.
T Consensus         1 MkVLviG-sGgREHAia~~l~~s~~v~~v~~a   31 (100)
T PF02844_consen    1 MKVLVIG-SGGREHAIAWKLSQSPSVEEVYVA   31 (100)
T ss_dssp             EEEEEEE-SSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHhcCCCCCEEEEe
Confidence            7999999 695556667777777776544433

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=93.26  E-value=0.37  Score=43.47  Aligned_cols=127  Identities=18%  Similarity=0.223  Sum_probs=71.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeee-----ecCHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPV-----MSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~-~~~gv~v-----~~dl~~~l~~~~~~~~~DV  109 (257)
                      |||.|.|.| .=|+.+++.+.+... -++.++-+ . |..   +.... ....+.+     .+++.+.+.+    .++|.
T Consensus         1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t~-~-g~~---~~~~~~~~~~v~~G~lg~~~~l~~~l~~----~~i~~   69 (249)
T PF02571_consen    1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVATS-Y-GGE---LLKPELPGLEVRVGRLGDEEGLAEFLRE----NGIDA   69 (249)
T ss_pred             CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEhh-h-hHh---hhccccCCceEEECCCCCHHHHHHHHHh----CCCcE
Confidence            689999975 678999988876554 33333321 1 211   11000 0011211     2344455543    78999


Q ss_pred             EEEcCChHhH---HHHHHHHHHcCCCeE-EeCCCCCH---------HHHHHHHHHh-hhcCceEEEccCchHHHHHHHHH
Q 025154          110 VIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL---------ETVSALSAFC-DKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       110 vIDFT~p~~~---~~~~~~a~~~Gi~vV-iGTTG~s~---------e~~~~L~~~a-~~~gipvl~spNfSlGvnll~~~  175 (257)
                      |||.|||-+.   ......|.+.|+|.+ ..=+.|..         +..++..+++ +..+-.||+    .+|.+-+..+
T Consensus        70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~ifl----ttGsk~L~~f  145 (249)
T PF02571_consen   70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFL----TTGSKNLPPF  145 (249)
T ss_pred             EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEE----eCchhhHHHH
Confidence            9999998555   455688889999987 33333321         1122333333 232246774    8899877777


Q ss_pred             HH
Q 025154          176 AI  177 (257)
Q Consensus       176 a~  177 (257)
                      ..
T Consensus       146 ~~  147 (249)
T PF02571_consen  146 VP  147 (249)
T ss_pred             hh
Confidence            54

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=93.26  E-value=0.39  Score=46.46  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=29.8

Q ss_pred             CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      +++...+..|.|+||+|+.||.+++.+.+ .++.+-+++-
T Consensus        73 ~~~~~~~~~VlVvGatG~vG~~iv~~llk-rgf~vra~VR  111 (411)
T KOG1203|consen   73 NNNSKKPTTVLVVGATGKVGRRIVKILLK-RGFSVRALVR  111 (411)
T ss_pred             CCCCCCCCeEEEecCCCchhHHHHHHHHH-CCCeeeeecc
Confidence            34445578999999999999999998775 5666655553

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=93.20  E-value=0.28  Score=47.53  Aligned_cols=85  Identities=21%  Similarity=0.268  Sum_probs=56.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .-||.|+|| |.||+.+++.+.+ .++.-+-++.+..  ..+.+++.   +++  +.-++++.+.+.      ++||||-
T Consensus       178 ~~~vlvIGA-Gem~~lva~~L~~-~g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l~------~~DvVis  244 (414)
T COG0373         178 DKKVLVIGA-GEMGELVAKHLAE-KGVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEALA------EADVVIS  244 (414)
T ss_pred             cCeEEEEcc-cHHHHHHHHHHHh-CCCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhhh------hCCEEEE
Confidence            357999996 9999999999875 4666666666542  12233332   333  333566677774      7999998


Q ss_pred             cC---ChHhHHHHHHHHHHcCCC
Q 025154          113 FT---DASTVYDNVKQATAFGMR  132 (257)
Q Consensus       113 FT---~p~~~~~~~~~a~~~Gi~  132 (257)
                      .|   +|-...+.+..+++....
T Consensus       245 sTsa~~~ii~~~~ve~a~~~r~~  267 (414)
T COG0373         245 STSAPHPIITREMVERALKIRKR  267 (414)
T ss_pred             ecCCCccccCHHHHHHHHhcccC
Confidence            76   355556788888776666

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.19  E-value=0.39  Score=47.63  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=25.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..||+|+|+ |.||+.|+..++ ..+++++ ++|.
T Consensus         5 ~~kV~VIGa-G~MG~gIA~~la-~aG~~V~-l~d~   36 (503)
T TIGR02279         5 VVTVAVIGA-GAMGAGIAQVAA-SAGHQVL-LYDI   36 (503)
T ss_pred             ccEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeC
Confidence            347999996 999999999876 4588876 4664

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=93.19  E-value=0.32  Score=45.43  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK   57 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~   57 (257)
                      |+||+|+|++|++|..++-.+..
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~   24 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIAS   24 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHh
Confidence            67999999889999999987764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=93.17  E-value=0.62  Score=42.39  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=26.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      |||.|+|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~   30 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVIL   30 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHH-CCCeEEEE
Confidence            5899999999999999998875 57888764

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=93.16  E-value=0.27  Score=45.19  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=27.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |.||.|+|++|-+|+.+++.+.+ .+.+++.++++
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~   34 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK   34 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence            56999999999999999999885 45666666664

>PRK05442 malate dehydrogenase; Provisional

Probab=93.13  E-value=0.32  Score=45.61  Aligned_cols=25  Identities=20%  Similarity=0.509  Sum_probs=21.0

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHh
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTK   57 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~   57 (257)
                      ..|.||+|+||+|.+|..++-.+..
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~   26 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIAS   26 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHh
Confidence            4678999999889999999876654

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=93.11  E-value=1.3  Score=42.89  Aligned_cols=89  Identities=17%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC--HHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVv  110 (257)
                      +-|+.|+|+ |..|+.+++.+.+++  +++++|.+|....  ..+.     .-.|+++..+  +.+.+.+    .++|.|
T Consensus       125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~-----~i~g~pVlg~~~l~~~i~~----~~id~V  192 (456)
T TIGR03022       125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGR-----LLTGLPVVGADDALRLYAR----TRYAYV  192 (456)
T ss_pred             CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCcc--cccc-----ccCCCcccChhHHHHHHHh----CCCCEE
Confidence            457999995 999999999887644  6899999985310  0110     0235666543  4444432    578854


Q ss_pred             EEcC---ChHhHHHHHHHHHHcCC-CeEE
Q 025154          111 IDFT---DASTVYDNVKQATAFGM-RSVV  135 (257)
Q Consensus       111 IDFT---~p~~~~~~~~~a~~~Gi-~vVi  135 (257)
                      +-..   .++...+.+..|.+.++ .+.+
T Consensus       193 iIAip~~~~~~~~~ll~~l~~~~v~~V~~  221 (456)
T TIGR03022       193 IVAMPGTQAEDMARLVRKLGALHFRNVLI  221 (456)
T ss_pred             EEecCCccHHHHHHHHHHHHhCCCeEEEE
Confidence            4332   34555677778888888 5443

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>cd00704 MDH Malate dehydrogenase

Probab=93.10  E-value=0.41  Score=44.78  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKAR   59 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~   59 (257)
                      +||+|+||+|++|+.++..+...+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~   24 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGE   24 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCC
Confidence            589999988999999998877543

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=93.08  E-value=1.1  Score=43.59  Aligned_cols=122  Identities=16%  Similarity=0.115  Sum_probs=68.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh--hcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV--CDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~~--~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      -+|.|+|+ |..|..+++.+. .+|+.=.-++|.... ..|.+..  +.. +..|-+-.....+.+.+    .++||-++
T Consensus        21 s~VlliG~-gglGsEilKNLv-L~GIg~~tIvD~~~V~~sDL~~nFfl~~-~diGk~kA~~~~~~L~e----LNp~V~i~   93 (425)
T cd01493          21 AHVCLLNA-TATGTEILKNLV-LPGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGKSRAEATCELLQE----LNPDVNGS   93 (425)
T ss_pred             CeEEEEcC-cHHHHHHHHHHH-HcCCCeEEEECCCcCchhhccccccCCh-hhcCcHHHHHHHHHHHH----HCCCCEEE
Confidence            48999996 899999999987 678876777885321 1122110  000 00111101111222322    47888777


Q ss_pred             cC--ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       113 FT--~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      +.  .++...+.... .=.+..+||.|+ .+......|.++|.+.++|++++..+.
T Consensus        94 ~~~e~~~~ll~~~~~-f~~~fdiVI~t~-~~~~~~~~L~~~c~~~~iPlI~~~s~G  147 (425)
T cd01493          94 AVEESPEALLDNDPS-FFSQFTVVIATN-LPESTLLRLADVLWSANIPLLYVRSYG  147 (425)
T ss_pred             EEecccchhhhhHHH-HhcCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            64  33333322111 123557787655 455566778889999899998766543

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=93.04  E-value=0.61  Score=45.61  Aligned_cols=95  Identities=15%  Similarity=0.119  Sum_probs=59.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhh--------------cCCCCCCeeeecCHHH
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC--------------DMEQPLEIPVMSDLTM   96 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~--------------g~~~~~gv~v~~dl~~   96 (257)
                      .||+|.| .|.+|+..++.+. +.+.+|+++.|+.     ..|-|..++.              +.....++... +.++
T Consensus       229 ~rVaVQG-fGNVG~~aA~~L~-e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~  305 (444)
T PRK14031        229 KVCLVSG-SGNVAQYTAEKVL-ELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGAR  305 (444)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcc
Confidence            5999999 5999999999876 5799999998842     2244443221              00001122222 3455


Q ss_pred             HHhccccCCCccEEEEcCChH-hHHHHHHHHHHcCCCeEEeCC
Q 025154           97 VLGSISQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        97 ~l~~~~~~~~~DVvIDFT~p~-~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      +++     .++||+|=+.... -..+++......|+.+|++--
T Consensus       306 ~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgA  343 (444)
T PRK14031        306 PWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGA  343 (444)
T ss_pred             ccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCC
Confidence            554     4788888554433 335677777777888887654

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=93.02  E-value=0.37  Score=45.53  Aligned_cols=99  Identities=16%  Similarity=0.113  Sum_probs=53.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC--HHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVvID  112 (257)
                      ..+|.|.|++|..|+..++.+. +-++..+.++.+.. ..+.-.-+|.   -.+.-|++  ..+.+.+.. ...+|+|+|
T Consensus       158 g~~vLv~ggsggVG~~aiQlAk-~~~~~~v~t~~s~e-~~~l~k~lGA---d~vvdy~~~~~~e~~kk~~-~~~~DvVlD  231 (347)
T KOG1198|consen  158 GKSVLVLGGSGGVGTAAIQLAK-HAGAIKVVTACSKE-KLELVKKLGA---DEVVDYKDENVVELIKKYT-GKGVDVVLD  231 (347)
T ss_pred             CCeEEEEeCCcHHHHHHHHHHH-hcCCcEEEEEcccc-hHHHHHHcCC---cEeecCCCHHHHHHHHhhc-CCCccEEEE
Confidence            3589999999999999998665 45544443333321 2222221111   11222444  333332100 246999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      |-........+......|...++++.|
T Consensus       232 ~vg~~~~~~~~~~l~~~g~~~~i~~~~  258 (347)
T KOG1198|consen  232 CVGGSTLTKSLSCLLKGGGGAYIGLVG  258 (347)
T ss_pred             CCCCCccccchhhhccCCceEEEEecc
Confidence            975544444444445566555777765

>PLN02214 cinnamoyl-CoA reductase

Probab=92.99  E-value=0.71  Score=42.79  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=27.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      +++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r   42 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVR   42 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeC
Confidence            46899999999999999998875 5788877653

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=92.97  E-value=0.31  Score=44.88  Aligned_cols=31  Identities=29%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      ||+|+|+ |.+|+.++..+....-. +| .++|.
T Consensus         2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei-~l~D~   33 (306)
T cd05291           2 KVVIIGA-GHVGSSFAYSLVNQGIADEL-VLIDI   33 (306)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCCEE-EEEeC
Confidence            8999996 99999999988755432 44 45664

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=92.96  E-value=0.43  Score=44.43  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||+|+|++|.+|..++-.+...+-..=...+|.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi   34 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI   34 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            6999999889999999987765543332335664

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=92.96  E-value=0.8  Score=42.72  Aligned_cols=41  Identities=12%  Similarity=0.046  Sum_probs=29.1

Q ss_pred             HHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154           94 LTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      ++++++      ..|||+|.+. .++-+-.-..|.++++++|-+.-||
T Consensus       102 l~~li~------~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aalGf  143 (307)
T cd01486         102 LEELIK------DHDVIFLLTDSRESRWLPTLLSAAKNKLVINAALGF  143 (307)
T ss_pred             HHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEEecc
Confidence            455664      7899999984 3444556677888999988665555

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.96  E-value=2.6  Score=40.28  Aligned_cols=136  Identities=18%  Similarity=0.167  Sum_probs=71.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCCCCCCeeee--cCHHHHHhccccCCCccEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g---~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ||.|+|. |+.|..+++.+. ..+.++. +.|.... .+..   .+..  ...|+.++  .+ .+.+.      ++|+||
T Consensus         1 ~~~~iG~-G~~G~a~a~~l~-~~G~~V~-~sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~-~~~~~------~~d~vv   67 (433)
T TIGR01087         1 KILILGL-GKTGRAVARFLH-KKGAEVT-VTDLKPN-EELEPSMGQLR--LNEGSVLHTGLH-LEDLN------NADLVV   67 (433)
T ss_pred             CEEEEEe-CHhHHHHHHHHH-HCCCEEE-EEeCCCC-ccchhHHHHHh--hccCcEEEecCc-hHHhc------cCCEEE
Confidence            5899995 999999998766 5688765 4774211 1111   1110  02356553  23 33443      689777


Q ss_pred             EcC-ChHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154          112 DFT-DASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (257)
Q Consensus       112 DFT-~p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~  174 (257)
                      --+ .|.. .+.+..|.++|+|++              ||-||-+-  --...|..+-+..|..++...|+  |..++..
T Consensus        68 ~sp~i~~~-~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gni--g~~~~~~  144 (433)
T TIGR01087        68 KSPGIPPD-HPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNI--GTPALEV  144 (433)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECcc--CHHHHHH
Confidence            433 2332 244555566665543              45554321  12234555555566667777785  4443322


Q ss_pred             HHHHhcCCCCCeEEEecc
Q 025154          175 AAISASFHYKNVEIVESR  192 (257)
Q Consensus       175 ~a~~l~~~~~DiEIiE~H  192 (257)
                      +. .   ...|+=|+|.-
T Consensus       145 ~~-~---~~~~~~V~E~~  158 (433)
T TIGR01087       145 LD-Q---EGAELYVLELS  158 (433)
T ss_pred             Hh-c---cCCCEEEEEcC
Confidence            21 1   23577777753

>PRK07340 ornithine cyclodeaminase; Validated

Probab=92.96  E-value=0.29  Score=45.25  Aligned_cols=91  Identities=16%  Similarity=0.086  Sum_probs=56.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .+|+|+| +|.||+.+++.+....+.+-+.++++..  ..+..++..-...++.+ ++++++++.      ++|+||-.|
T Consensus       126 ~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~--~~a~~~a~~~~~~~~~~~~~~~~~av~------~aDiVitaT  196 (304)
T PRK07340        126 GDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTA--ASAAAFCAHARALGPTAEPLDGEAIPE------AVDLVVTAT  196 (304)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCCeeEECCHHHHhh------cCCEEEEcc
Confidence            5899999 5999999999987666677777887541  11112211000112233 578888885      799999877


Q ss_pred             ChHhHHHHHHHHHHcCCCeE-EeC
Q 025154          115 DASTVYDNVKQATAFGMRSV-VYV  137 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vV-iGT  137 (257)
                      ....  ..+...++-|.++. ||+
T Consensus       197 ~s~~--Pl~~~~~~~g~hi~~iGs  218 (304)
T PRK07340        197 TSRT--PVYPEAARAGRLVVAVGA  218 (304)
T ss_pred             CCCC--ceeCccCCCCCEEEecCC
Confidence            4222  22222367888776 554

>PRK06223 malate dehydrogenase; Reviewed

Probab=92.95  E-value=0.36  Score=44.13  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=24.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |+||+|+|+ |.||..++..+....-.+|+ .+|.
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~-L~D~   34 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVV-LFDI   34 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEE-EEEC
Confidence            789999997 99999999887754312554 4564

>PRK06182 short chain dehydrogenase; Validated

Probab=92.95  E-value=1  Score=39.83  Aligned_cols=78  Identities=19%  Similarity=0.262  Sum_probs=49.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.++++.. +..  ...                  +++..     .... +..|.+
T Consensus         4 k~vlItGasggiG~~la~~l~~-~G~~V~~~~-r~~--~~l------------------~~~~~-----~~~~~~~~Dv~   56 (273)
T PRK06182          4 KVALVTGASSGIGKATARRLAA-QGYTVYGAA-RRV--DKM------------------EDLAS-----LGVHPLSLDVT   56 (273)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe-CCH--HHH------------------HHHHh-----CCCeEEEeeCC
Confidence            4799999999999999998875 588877643 221  001                  11111     1222 446778


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      .++.....+....+.  ++.+|+-..|.
T Consensus        57 ~~~~~~~~~~~~~~~~~~id~li~~ag~   84 (273)
T PRK06182         57 DEASIKAAVDTIIAEEGRIDVLVNNAGY   84 (273)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            877776666655443  57777766553

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=92.90  E-value=0.37  Score=46.48  Aligned_cols=88  Identities=18%  Similarity=0.188  Sum_probs=50.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .+|+|+|+ |.||+.+++.+.. .++.-+-++++..  ..+.+++.   ..+  ...++++.+.+.      .+||||..
T Consensus       181 ~~VlViGa-G~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l~------~aDvVi~a  247 (417)
T TIGR01035       181 KKALLIGA-GEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYLA------EADIVISS  247 (417)
T ss_pred             CEEEEECC-hHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHHh------hCCEEEEC
Confidence            58999996 9999999998876 4643344556431  11122221   112  112346666664      79999998


Q ss_pred             CC-hHh--HHHHHHHHHHcC-CC-eEEe
Q 025154          114 TD-AST--VYDNVKQATAFG-MR-SVVY  136 (257)
Q Consensus       114 T~-p~~--~~~~~~~a~~~G-i~-vViG  136 (257)
                      |. |..  ..+.+..+...+ .| +|+-
T Consensus       248 T~s~~~ii~~e~l~~~~~~~~~~~~viD  275 (417)
T TIGR01035       248 TGAPHPIVSKEDVERALRERTRPLFIID  275 (417)
T ss_pred             CCCCCceEcHHHHHHHHhcCCCCeEEEE
Confidence            73 332  245566554432 44 4443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK05993 short chain dehydrogenase; Provisional

Probab=92.90  E-value=1  Score=40.06  Aligned_cols=77  Identities=16%  Similarity=0.233  Sum_probs=47.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++... +..  ...                  +++.+     ...+ +..|++
T Consensus         5 k~vlItGasggiG~~la~~l~~-~G~~Vi~~~-r~~--~~~------------------~~l~~-----~~~~~~~~Dl~   57 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQS-DGWRVFATC-RKE--EDV------------------AALEA-----EGLEAFQLDYA   57 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEE-CCH--HHH------------------HHHHH-----CCceEEEccCC
Confidence            4699999999999999998875 578877643 321  111                  11111     1233 346778


Q ss_pred             ChHhHHHHHHHHHH---cCCCeEEeCCC
Q 025154          115 DASTVYDNVKQATA---FGMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~---~Gi~vViGTTG  139 (257)
                      .++.....+..+.+   .++.+|+-..|
T Consensus        58 d~~~~~~~~~~~~~~~~g~id~li~~Ag   85 (277)
T PRK05993         58 EPESIAALVAQVLELSGGRLDALFNNGA   85 (277)
T ss_pred             CHHHHHHHHHHHHHHcCCCccEEEECCC
Confidence            77777666666544   24677765543

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=92.88  E-value=0.5  Score=44.25  Aligned_cols=26  Identities=19%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKAR   59 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~   59 (257)
                      .|+||+|+||+|..|+.++-.+...+
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~   27 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGE   27 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCC
Confidence            57999999988999999998776543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.85  E-value=0.79  Score=44.35  Aligned_cols=84  Identities=12%  Similarity=0.035  Sum_probs=50.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .-+|+|+| +|.+|+.+++.+. .-+++++. +|... .+ ..+..    ..|..+ .++++++.      .+|++|++|
T Consensus       195 Gk~VvViG-~G~IG~~vA~~ak-~~Ga~ViV-~d~dp-~r-~~~A~----~~G~~v-~~leeal~------~aDVVItaT  258 (406)
T TIGR00936       195 GKTVVVAG-YGWCGKGIAMRAR-GMGARVIV-TEVDP-IR-ALEAA----MDGFRV-MTMEEAAK------IGDIFITAT  258 (406)
T ss_pred             cCEEEEEC-CCHHHHHHHHHHh-hCcCEEEE-EeCCh-hh-HHHHH----hcCCEe-CCHHHHHh------cCCEEEECC
Confidence            34899999 5999999999776 55788554 55321 01 11111    124333 35677764      789999998


Q ss_pred             ChHhHHH-HHHHHHHcCCCeE
Q 025154          115 DASTVYD-NVKQATAFGMRSV  134 (257)
Q Consensus       115 ~p~~~~~-~~~~a~~~Gi~vV  134 (257)
                      -...... ....+++.|.-++
T Consensus       259 G~~~vI~~~~~~~mK~Gaili  279 (406)
T TIGR00936       259 GNKDVIRGEHFENMKDGAIVA  279 (406)
T ss_pred             CCHHHHHHHHHhcCCCCcEEE
Confidence            5444443 3444555555444

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PTZ00325 malate dehydrogenase; Provisional

Probab=92.77  E-value=0.46  Score=44.47  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=27.1

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -+|.||+|+|+.|++|+.++..+....-..-+..+|.
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            3578999999889999999988875443333335554

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=92.77  E-value=0.18  Score=42.73  Aligned_cols=63  Identities=25%  Similarity=0.230  Sum_probs=40.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ..+|+|+| +|++|+.+++.+. .=++++.+ +|+..  .+.....    ..++ -+.++++++.      .+|+|+-.
T Consensus        36 g~tvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~--~~~~~~~----~~~~-~~~~l~ell~------~aDiv~~~   98 (178)
T PF02826_consen   36 GKTVGIIG-YGRIGRAVARRLK-AFGMRVIG-YDRSP--KPEEGAD----EFGV-EYVSLDELLA------QADIVSLH   98 (178)
T ss_dssp             TSEEEEES-TSHHHHHHHHHHH-HTT-EEEE-EESSC--HHHHHHH----HTTE-EESSHHHHHH------H-SEEEE-
T ss_pred             CCEEEEEE-EcCCcCeEeeeee-cCCceeEE-ecccC--Chhhhcc----cccc-eeeehhhhcc------hhhhhhhh
Confidence            46899999 6999999999876 56888775 55431  1111011    2234 3569999996      69987754

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06436 glycerate dehydrogenase; Provisional

Probab=92.73  E-value=0.59  Score=43.33  Aligned_cols=58  Identities=19%  Similarity=0.186  Sum_probs=40.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+..  .+          .++ ..+.++++++.      .+|+|+-.
T Consensus       122 gktvgIiG-~G~IG~~vA~~l~-afG~~V~~-~~r~~--~~----------~~~~~~~~~l~ell~------~aDiv~~~  180 (303)
T PRK06436        122 NKSLGILG-YGGIGRRVALLAK-AFGMNIYA-YTRSY--VN----------DGISSIYMEPEDIMK------KSDFVLIS  180 (303)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCCC--cc----------cCcccccCCHHHHHh------hCCEEEEC
Confidence            35899999 6999999998665 45888874 55431  11          112 12568999985      79988754

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=92.65  E-value=0.25  Score=47.68  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..+|+|+|+ |.||+.+++.+.. .+.+-+.++++..  ..+..++.   .++  +..++++.+.+.      .+|+||.
T Consensus       182 ~~~vlViGa-G~iG~~~a~~L~~-~G~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVI~  248 (423)
T PRK00045        182 GKKVLVIGA-GEMGELVAKHLAE-KGVRKITVANRTL--ERAEELAE---EFGGEAIPLDELPEALA------EADIVIS  248 (423)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHH-CCCCeEEEEeCCH--HHHHHHHH---HcCCcEeeHHHHHHHhc------cCCEEEE
Confidence            368999995 9999999998874 4664444566431  11122221   222  222345556663      7899999


Q ss_pred             cCC-hHh--HHHHHHHHH
Q 025154          113 FTD-AST--VYDNVKQAT  127 (257)
Q Consensus       113 FT~-p~~--~~~~~~~a~  127 (257)
                      .|. |..  ..+.+..++
T Consensus       249 aT~s~~~~i~~~~l~~~~  266 (423)
T PRK00045        249 STGAPHPIIGKGMVERAL  266 (423)
T ss_pred             CCCCCCcEEcHHHHHHHH
Confidence            874 332  244555544

>PRK08291 ectoine utilization protein EutC; Validated

Probab=92.64  E-value=0.36  Score=45.01  Aligned_cols=89  Identities=16%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCe--eeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g-~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ..+|+|+|+ |.+|+.++..+....+++-+.++++..  ..+..+.. ..+..++  ..++|+++++.      ++|+||
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~--~~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi  202 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDA--AKAEAYAADLRAELGIPVTVARDVHEAVA------GADIIV  202 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEE
Confidence            358999995 999999999887656677888887541  11122211 0012234  44789999885      789998


Q ss_pred             EcCChHhHHHHHHH-HHHcCCCeE
Q 025154          112 DFTDASTVYDNVKQ-ATAFGMRSV  134 (257)
Q Consensus       112 DFT~p~~~~~~~~~-a~~~Gi~vV  134 (257)
                      -.|...  ...+.. .++.|.++.
T Consensus       203 ~aT~s~--~p~i~~~~l~~g~~v~  224 (330)
T PRK08291        203 TTTPSE--EPILKAEWLHPGLHVT  224 (330)
T ss_pred             EeeCCC--CcEecHHHcCCCceEE
Confidence            666322  122322 356777654

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=92.62  E-value=0.38  Score=44.96  Aligned_cols=63  Identities=16%  Similarity=0.105  Sum_probs=41.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      -.+|||+| +|++|+.+++.+...=+++++ +.|+.. ..+...      ..++. +.+++++++      .+|+|+--
T Consensus       145 gktvGIiG-~G~IG~~va~~l~~~fgm~V~-~~~~~~-~~~~~~------~~~~~-~~~l~ell~------~sDvv~lh  207 (323)
T PRK15409        145 HKTLGIVG-MGRIGMALAQRAHFGFNMPIL-YNARRH-HKEAEE------RFNAR-YCDLDTLLQ------ESDFVCII  207 (323)
T ss_pred             CCEEEEEc-ccHHHHHHHHHHHhcCCCEEE-EECCCC-chhhHH------hcCcE-ecCHHHHHH------hCCEEEEe
Confidence            36899999 699999999977524578876 455431 111111      22333 468999996      79987754

>PRK08177 short chain dehydrogenase; Provisional

Probab=92.62  E-value=0.82  Score=39.16  Aligned_cols=80  Identities=14%  Similarity=0.160  Sum_probs=48.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      |.+|.|.|++|.+|+.+++.+.+ .+.+|+.+ ++..  .+..++.               +. .      +.. ..+|+
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~~-~r~~--~~~~~~~---------------~~-~------~~~~~~~D~   54 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLE-RGWQVTAT-VRGP--QQDTALQ---------------AL-P------GVHIEKLDM   54 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHh-CCCEEEEE-eCCC--cchHHHH---------------hc-c------ccceEEcCC
Confidence            45799999999999999999885 47887654 4321  1111111               00 0      111 23567


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      +.++.....+....+.++.+|+=..|.
T Consensus        55 ~d~~~~~~~~~~~~~~~id~vi~~ag~   81 (225)
T PRK08177         55 NDPASLDQLLQRLQGQRFDLLFVNAGI   81 (225)
T ss_pred             CCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence            777766666665555567777755443

>PLN00203 glutamyl-tRNA reductase

Probab=92.59  E-value=0.38  Score=47.94  Aligned_cols=83  Identities=16%  Similarity=0.252  Sum_probs=49.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..||+|+|+ |.||+.+++.+.. .+++=+-++++..  ..+..+...-....+  ..++++.+.+.      .+|+||-
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al~------~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACAA------EADVVFT  335 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHHh------cCCEEEE
Confidence            468999996 9999999998875 4654455566531  222223210000112  22456666664      7999998


Q ss_pred             cC---ChHhHHHHHHHHH
Q 025154          113 FT---DASTVYDNVKQAT  127 (257)
Q Consensus       113 FT---~p~~~~~~~~~a~  127 (257)
                      .|   .|-...+.++.+.
T Consensus       336 AT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        336 STSSETPLFLKEHVEALP  353 (519)
T ss_pred             ccCCCCCeeCHHHHHHhh
Confidence            76   3444456666554

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.57  E-value=0.82  Score=42.34  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=27.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .++||.|.|++|-+|+.+++.+.+. +.+++++.
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d   46 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD   46 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence            3579999999999999999998864 67887653

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.54  E-value=1.7  Score=42.24  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||.|+|+ |..|..+++.+. ..+.+++ ++|.
T Consensus        17 ~~v~viG~-G~~G~~~A~~L~-~~G~~V~-~~d~   47 (480)
T PRK01438         17 LRVVVAGL-GVSGFAAADALL-ELGARVT-VVDD   47 (480)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeC
Confidence            48999996 999999998776 5678855 4663

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=92.50  E-value=0.52  Score=46.89  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=43.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .+|+|+| +|+||+.+++.+. .-++++.+ +|+.. ..+..      ...++...+++++++.      .+|+|+-..
T Consensus       139 ktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~-~~~~~------~~~g~~~~~~l~ell~------~aDvV~l~l  201 (525)
T TIGR01327       139 KTLGVIG-LGRIGSIVAKRAK-AFGMKVLA-YDPYI-SPERA------EQLGVELVDDLDELLA------RADFITVHT  201 (525)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCC-ChhHH------HhcCCEEcCCHHHHHh------hCCEEEEcc
Confidence            5899999 6999999999876 45788765 56531 11111      1345555678999995      799888554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=92.49  E-value=1.2  Score=42.37  Aligned_cols=90  Identities=12%  Similarity=0.167  Sum_probs=49.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ee-eecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-VMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g-v~-v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |||+|+|. |.-++++++.+.+.. ..+..++.+...|.  ....    +.. +. -+.|.+.+++ +++..++|++|-.
T Consensus         1 ~kiliiG~-G~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~d~~~l~~-~~~~~~id~vi~~   71 (423)
T TIGR00877         1 MKVLVIGN-GGREHALAWKLAQSP-LVKYVYVAPGNAGT--ARLA----KNKNVAISITDIEALVE-FAKKKKIDLAVIG   71 (423)
T ss_pred             CEEEEECC-ChHHHHHHHHHHhCC-CccEEEEECCCHHH--hhhc----ccccccCCCCCHHHHHH-HHHHhCCCEEEEC
Confidence            69999995 888999999887653 33333334322121  1110    111 11 1356555542 2333678887755


Q ss_pred             CChHhHHHHHHHHHHcCCCeE
Q 025154          114 TDASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      +.-......+..+.+.|++++
T Consensus        72 ~e~~l~~~~~~~l~~~gi~~~   92 (423)
T TIGR00877        72 PEAPLVLGLVDALEEAGIPVF   92 (423)
T ss_pred             CchHHHHHHHHHHHHCCCeEE
Confidence            432223345566667888764

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=92.46  E-value=0.47  Score=42.33  Aligned_cols=78  Identities=14%  Similarity=0.179  Sum_probs=48.2

Q ss_pred             EEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC---
Q 025154           39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD---  115 (257)
Q Consensus        39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~---  115 (257)
                      .|.|++|-+|+.+++.+.+. +.+++.+....              ..++.-..+++++++.    .++|+||.+..   
T Consensus         1 lItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~--------------~~Dl~~~~~l~~~~~~----~~~d~Vih~A~~~~   61 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEAL-GFTNLVLRTHK--------------ELDLTRQADVEAFFAK----EKPTYVILAAAKVG   61 (306)
T ss_pred             CcccCCCcccHHHHHHHHhC-CCcEEEeeccc--------------cCCCCCHHHHHHHHhc----cCCCEEEEeeeeec
Confidence            37899999999999998754 56655443221              1112223456666653    46899999841   


Q ss_pred             --------hH--------hHHHHHHHHHHcCCC-eEE
Q 025154          116 --------AS--------TVYDNVKQATAFGMR-SVV  135 (257)
Q Consensus       116 --------p~--------~~~~~~~~a~~~Gi~-vVi  135 (257)
                              |.        .....++.|.++++. +|.
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~   98 (306)
T PLN02725         62 GIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF   98 (306)
T ss_pred             ccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence                    11        134467777788864 553

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=92.40  E-value=0.68  Score=47.30  Aligned_cols=97  Identities=14%  Similarity=0.151  Sum_probs=60.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC------------CC-------Ccchhhhh-----cCCCCCCee-
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------------SV-------GEDIGMVC-----DMEQPLEIP-   89 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~------------~~-------g~d~g~~~-----g~~~~~gv~-   89 (257)
                      ..||.|+|| |..|..+++.++. -|+.=..++|..            ..       |+.-.+.+     .+  ..++. 
T Consensus       338 ~~kVLIvGa-GGLGs~VA~~La~-~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~I--nP~v~i  413 (664)
T TIGR01381       338 QLKVLLLGA-GTLGCNVARCLIG-WGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRI--FPSIQA  413 (664)
T ss_pred             cCeEEEECC-cHHHHHHHHHHHH-cCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHH--CCCcEE
Confidence            469999996 9999999998874 466555566621            00       22111110     11  01111 


Q ss_pred             -------------eec-----------CHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCCCCC
Q 025154           90 -------------VMS-----------DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQ  141 (257)
Q Consensus        90 -------------v~~-----------dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTTG~s  141 (257)
                                   +..           +++++++      ..|||+|.+. .++-.-.-..|.++++|+|.|.-||+
T Consensus       414 ~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~------~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aAlGfd  484 (664)
T TIGR01381       414 TGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIK------DHDVVFLLLDSREARWLPTVLCSRHKKIAISAALGFD  484 (664)
T ss_pred             EEeeeeeccccccCCchhhhhccccHHHHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence                         111           2445664      7899999994 45545566888999999998876663

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=92.36  E-value=1.5  Score=41.09  Aligned_cols=62  Identities=21%  Similarity=0.218  Sum_probs=41.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .++||+| +||+|+++++.+. -=++++.. .++... .+...      ..+...+ +++++++      .+|+++.-.
T Consensus       147 ktvGIiG-~GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~~------~~~~~y~-~l~ell~------~sDii~l~~  208 (324)
T COG1052         147 KTLGIIG-LGRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAEK------ELGARYV-DLDELLA------ESDIISLHC  208 (324)
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHHh------hcCceec-cHHHHHH------hCCEEEEeC
Confidence            6899999 7999999999876 66788775 443311 11111      2233434 4999996      799887654

>PRK14851 hypothetical protein; Provisional

Probab=92.29  E-value=0.76  Score=47.27  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=24.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .-||+|+|+ |..|..++..+.. .++.=.-++|
T Consensus        43 ~~~VlIvG~-GGlGs~va~~Lar-~GVG~l~LvD   74 (679)
T PRK14851         43 EAKVAIPGM-GGVGGVHLITMVR-TGIGRFHIAD   74 (679)
T ss_pred             cCeEEEECc-CHHHHHHHHHHHH-hCCCeEEEEc
Confidence            468999996 9999999998874 4554444555

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.20  E-value=1.8  Score=39.91  Aligned_cols=31  Identities=26%  Similarity=0.264  Sum_probs=26.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+||.|.|++|-+|+.+++.+.+ .+.++++.
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~-~G~~V~~~   34 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLE-LGAEVYGY   34 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHH-CCCEEEEE
Confidence            36899999999999999999885 57887764

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK14982 acyl-ACP reductase; Provisional

Probab=92.15  E-value=0.34  Score=45.77  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=24.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      .+|+|+||+|.||+.+++.+....+. +|+ ++++
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R  189 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR  189 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence            58999999999999999999754333 444 3443

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=92.12  E-value=0.92  Score=39.97  Aligned_cols=30  Identities=37%  Similarity=0.445  Sum_probs=25.3

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |.|.|++|-.|+.+++.+.+ .+.++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   30 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTK-DGHEVTILTR   30 (292)
T ss_pred             CEEEcccchhhHHHHHHHHH-cCCEEEEEeC
Confidence            57999999999999998875 5788887654

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=92.09  E-value=0.47  Score=44.21  Aligned_cols=89  Identities=17%  Similarity=0.130  Sum_probs=56.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      .-+++|+|+ |.||+.+++.+....+++-+.++++..  ..+..++.. ....+  +..++++++++.      ++||||
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av~------~aDiVv  199 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAMS------GADIIV  199 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHhc------cCCEEE
Confidence            358999995 999999999987667788788887541  112222210 01123  344788998885      799999


Q ss_pred             EcCChHhHHHHH-HHHHHcCCCeE
Q 025154          112 DFTDASTVYDNV-KQATAFGMRSV  134 (257)
Q Consensus       112 DFT~p~~~~~~~-~~a~~~Gi~vV  134 (257)
                      -.|....  ..+ ...++.|.++.
T Consensus       200 taT~s~~--p~i~~~~l~~g~~i~  221 (326)
T TIGR02992       200 TTTPSET--PILHAEWLEPGQHVT  221 (326)
T ss_pred             EecCCCC--cEecHHHcCCCcEEE
Confidence            7764221  222 23467787765

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=92.08  E-value=1.7  Score=44.13  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=27.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA   66 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~   66 (257)
                      ++||.|+|++|-+|+.+++.+.+. ++.++++.
T Consensus         6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~   38 (668)
T PLN02260          6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVL   38 (668)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence            479999999999999999998865 47887754

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=92.06  E-value=1.8  Score=38.94  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=27.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .+|.|.|++|-+|+.+++.+.+ .+.++++...
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r   36 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQ-RGYTVKATVR   36 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHH-CCCEEEEEEc
Confidence            5899999999999999998875 5788876653

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=92.04  E-value=1  Score=43.64  Aligned_cols=116  Identities=12%  Similarity=0.104  Sum_probs=65.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .+|||.|+| +|.=..+++..+.++ +.++..+......|.  ..+.   ... +.+ ..|++++++ +|+..++|.||-
T Consensus         1 ~~~kVLvlG-~G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a---~~~-~~~~~~d~e~l~~-~~~~~~id~Vi~   71 (435)
T PRK06395          1 MTMKVMLVG-SGGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS---KKY-LFYDEKDYDLIED-FALKNNVDIVFV   71 (435)
T ss_pred             CceEEEEEC-CcHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc---cce-eecCCCCHHHHHH-HHHHhCCCEEEE
Confidence            368999999 588888888777765 467777654222110  0011   000 111 246666543 344468997775


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCCC--HHH-HHHHHHHhhhcCceE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQ--LET-VSALSAFCDKASMGC  159 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s--~e~-~~~L~~~a~~~gipv  159 (257)
                      ...+......+....+.|++++ |.+--.  .+. ....+++.++.|+|.
T Consensus        72 ~~d~~l~~~~~~~l~~~Gi~v~-gps~~~a~~e~dK~~~k~~l~~~gIpt  120 (435)
T PRK06395         72 GPDPVLATPLVNNLLKRGIKVA-SPTMEAAMIETSKMFMRYLMERHNIPG  120 (435)
T ss_pred             CCChHHHHHHHHHHHHCCCcEE-CCCHHHHHHhhCHHHHHHHHHHCCcCC
Confidence            5444444455666678898865 544211  111 123466777777774

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.00  E-value=0.79  Score=44.42  Aligned_cols=83  Identities=10%  Similarity=0.149  Sum_probs=48.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      -+|+|+|+ |.+|+.+++.+. .-+.+++. +|.... + . +.+   ...|+.+. ++++++.      .+||+|+.|-
T Consensus       203 ktVvViG~-G~IG~~va~~ak-~~Ga~ViV-~d~d~~-R-~-~~A---~~~G~~~~-~~~e~v~------~aDVVI~atG  266 (413)
T cd00401         203 KVAVVAGY-GDVGKGCAQSLR-GQGARVIV-TEVDPI-C-A-LQA---AMEGYEVM-TMEEAVK------EGDIFVTTTG  266 (413)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EECChh-h-H-HHH---HhcCCEEc-cHHHHHc------CCCEEEECCC
Confidence            48999995 999999998766 45777554 664211 0 1 111   12344332 3456663      6899999885


Q ss_pred             hHhHHH-HHHHHHHcCCCeE
Q 025154          116 ASTVYD-NVKQATAFGMRSV  134 (257)
Q Consensus       116 p~~~~~-~~~~a~~~Gi~vV  134 (257)
                      ...... -...+++.|.-++
T Consensus       267 ~~~~i~~~~l~~mk~Ggilv  286 (413)
T cd00401         267 NKDIITGEHFEQMKDGAIVC  286 (413)
T ss_pred             CHHHHHHHHHhcCCCCcEEE
Confidence            443433 3244556665553

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=91.99  E-value=1  Score=39.44  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=24.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg   65 (257)
                      |+|.|+|++|.+|+.+++.+.+ .+.+++.
T Consensus         1 m~vlItGas~gIG~aia~~l~~-~G~~V~~   29 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLK-KGARVVI   29 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHH-cCCEEEE
Confidence            5899999999999999998875 5777654

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=91.94  E-value=0.3  Score=45.23  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=31.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .+.||+|.||.|.+||-+.-++..+|.+.-.+.+|-
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi   62 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI   62 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence            357999999999999999988888888887788883

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=91.89  E-value=0.86  Score=42.46  Aligned_cols=95  Identities=18%  Similarity=0.226  Sum_probs=55.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeecC--HHHHHhccccCCCccEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMSD--LTMVLGSISQSKARAVVI  111 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv---~v~~d--l~~~l~~~~~~~~~DVvI  111 (257)
                      +|.|.|++|..|...++++. .-+...+++..+..   ....+.    ++|.   .-|.+  +.+.+.++..+..+|+++
T Consensus       145 ~VLV~gaaGgVG~~aiQlAk-~~G~~~v~~~~s~~---k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~  216 (326)
T COG0604         145 TVLVHGAAGGVGSAAIQLAK-ALGATVVAVVSSSE---KLELLK----ELGADHVINYREEDFVEQVRELTGGKGVDVVL  216 (326)
T ss_pred             EEEEecCCchHHHHHHHHHH-HcCCcEEEEecCHH---HHHHHH----hcCCCEEEcCCcccHHHHHHHHcCCCCceEEE
Confidence            69999999999999998765 44546666555321   111111    2221   11222  333332221123578888


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      |-.-.+...+.+......|.=+.+|.++
T Consensus       217 D~vG~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         217 DTVGGDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             ECCCHHHHHHHHHHhccCCEEEEEecCC
Confidence            8777777777666666666666677764

>PLN02240 UDP-glucose 4-epimerase

Probab=91.85  E-value=1.3  Score=40.49  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=26.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         6 ~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~   36 (352)
T PLN02240          6 RTILVTGGAGYIGSHTVLQLLL-AGYKVVVID   36 (352)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            5899999999999999999875 468877653

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=91.82  E-value=0.94  Score=42.62  Aligned_cols=129  Identities=18%  Similarity=0.226  Sum_probs=77.7

Q ss_pred             ccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee---ecCHHHHHhcccc
Q 025154           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQ  103 (257)
Q Consensus        27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v---~~dl~~~l~~~~~  103 (257)
                      ..++......||.+.| +|-.|+.++-.+ +.=++++++ +|+- ...++-.++..   .-+.-   .+.+..++++   
T Consensus         4 igt~~~~~a~kvmLLG-SGELGKEvaIe~-QRLG~eViA-VDrY-~~APAmqVAhr---s~Vi~MlD~~al~avv~r---   73 (394)
T COG0027           4 IGTPLRPQATKVMLLG-SGELGKEVAIEA-QRLGVEVIA-VDRY-ANAPAMQVAHR---SYVIDMLDGDALRAVVER---   73 (394)
T ss_pred             ccCCCCCCCeEEEEec-CCccchHHHHHH-HhcCCEEEE-ecCc-CCChhhhhhhh---eeeeeccCHHHHHHHHHh---
Confidence            4566677778999999 799999999655 466899986 4532 12233333321   11111   2344555654   


Q ss_pred             CCCccEEEEcCChHhHHHHHHHHHHcCCCeEEe------------------------CCCC-CHHHHHHHHHHhhhcCce
Q 025154          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVY------------------------VPHI-QLETVSALSAFCDKASMG  158 (257)
Q Consensus       104 ~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViG------------------------TTG~-s~e~~~~L~~~a~~~gip  158 (257)
                       .+||.+|-=. -....+.+...-+.|..||=.                        |+.+ -.+..+++.+++++-|.|
T Consensus        74 -ekPd~IVpEi-EAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfP  151 (394)
T COG0027          74 -EKPDYIVPEI-EAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFP  151 (394)
T ss_pred             -hCCCeeeehh-hhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCC
Confidence             6888776211 111134444455666665421                        1111 123456789999999999


Q ss_pred             EEEccCchH
Q 025154          159 CLIAPTLSI  167 (257)
Q Consensus       159 vl~spNfSl  167 (257)
                      +++.|=||-
T Consensus       152 cvvKPvMSS  160 (394)
T COG0027         152 CVVKPVMSS  160 (394)
T ss_pred             eeccccccc
Confidence            999999985

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=91.74  E-value=0.41  Score=42.94  Aligned_cols=69  Identities=16%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             EEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           38 VIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~---~g--~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      |+|+|+.|.||..++..+....  ...=+..+|...   .+  .|+...........+..++|+++.+.      ++|+|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~------~aDiV   74 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK------DADVV   74 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC------CCCEE
Confidence            6899977999999999887654  222234567421   11  12222221100234555778777774      79988


Q ss_pred             EE
Q 025154          111 ID  112 (257)
Q Consensus       111 ID  112 (257)
                      |.
T Consensus        75 v~   76 (263)
T cd00650          75 II   76 (263)
T ss_pred             EE
Confidence            86

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.72  E-value=1.5  Score=41.40  Aligned_cols=96  Identities=21%  Similarity=0.196  Sum_probs=63.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      .+|+|+|+ |..|..-++... .=+++++++-.+..                     .-+++++.    ..+|+.|||+-
T Consensus       183 ~~vgI~Gl-GGLGh~aVq~AK-AMG~rV~vis~~~~---------------------kkeea~~~----LGAd~fv~~~~  235 (360)
T KOG0023|consen  183 KWVGIVGL-GGLGHMAVQYAK-AMGMRVTVISTSSK---------------------KKEEAIKS----LGADVFVDSTE  235 (360)
T ss_pred             cEEEEecC-cccchHHHHHHH-HhCcEEEEEeCCch---------------------hHHHHHHh----cCcceeEEecC
Confidence            58999997 669999998655 45888886432210                     12455554    47899999995


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~  161 (257)
                      -....+.+..+...+++-|+-   |++..++.+-.+.|.+|.-|++
T Consensus       236 d~d~~~~~~~~~dg~~~~v~~---~a~~~~~~~~~~lk~~Gt~V~v  278 (360)
T KOG0023|consen  236 DPDIMKAIMKTTDGGIDTVSN---LAEHALEPLLGLLKVNGTLVLV  278 (360)
T ss_pred             CHHHHHHHHHhhcCcceeeee---ccccchHHHHHHhhcCCEEEEE
Confidence            455556666677877776652   2333445677777877765554

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=91.61  E-value=1.5  Score=41.90  Aligned_cols=97  Identities=15%  Similarity=0.108  Sum_probs=58.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCC----------------cc--hhhhhcCCCCCCeeee---c
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG----------------ED--IGMVCDMEQPLEIPVM---S   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g----------------~d--~g~~~g~~~~~gv~v~---~   92 (257)
                      |.|+.|.|+||-+|....+.+.+.|+ +++++.....+..                .|  ....+... ..++.++   +
T Consensus         1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~-~~~~~v~~G~~   79 (385)
T COG0743           1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDL-LPGTEVLVGEE   79 (385)
T ss_pred             CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhh-ccCceEEecHH
Confidence            57999999999999999999988877 6888876521100                00  00000000 0012222   2


Q ss_pred             CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      .+.++.+    ..++|+|+-.-.-.+-+.-...|++.|+.+-..
T Consensus        80 ~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLA  119 (385)
T COG0743          80 GLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALA  119 (385)
T ss_pred             HHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeec
Confidence            3334433    256888887665555555566778888887764

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.54  E-value=1.1  Score=43.29  Aligned_cols=83  Identities=12%  Similarity=-0.046  Sum_probs=63.7

Q ss_pred             hHhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCCCCCeEEEeccC
Q 025154          116 ASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP  193 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi--~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~~~DiEIiE~HH  193 (257)
                      +.....++.++.+.|.  -+|++-| |-+...++|+..|.+.++|++-+.--+==+.++.+-...+.++.||+=|+++--
T Consensus       115 TTtc~KlA~y~kkkG~K~~LvcaDT-FRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSG  193 (483)
T KOG0780|consen  115 TTTCTKLAYYYKKKGYKVALVCADT-FRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSG  193 (483)
T ss_pred             ceeHHHHHHHHHhcCCceeEEeecc-cccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence            4445566777777764  4555555 666667889999999999999876666666677777778877899999999999


Q ss_pred             CCCCCC
Q 025154          194 NARVRY  199 (257)
Q Consensus       194 ~~K~Da  199 (257)
                      |+|.++
T Consensus       194 Rh~qe~  199 (483)
T KOG0780|consen  194 RHKQEA  199 (483)
T ss_pred             chhhhH
Confidence            998884

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.53  E-value=3.2  Score=40.54  Aligned_cols=141  Identities=21%  Similarity=0.096  Sum_probs=70.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-C-cchhhhhcCCCCCCeeee-cCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-G-EDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g-~d~g~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVvID  112 (257)
                      -||+|+|. |+-|+..++.+. ..+.+++ +.|.... . .+..++.    ..+..+. ....+.+.      ++|+||-
T Consensus         9 ~~v~v~G~-G~sG~~~~~~l~-~~g~~v~-~~d~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~d~vV~   75 (468)
T PRK04690          9 RRVALWGW-GREGRAAYRALR-AHLPAQA-LTLFCNAVEAREVGALA----DAALLVETEASAQRLA------AFDVVVK   75 (468)
T ss_pred             CEEEEEcc-chhhHHHHHHHH-HcCCEEE-EEcCCCcccchHHHHHh----hcCEEEeCCCChHHcc------CCCEEEE
Confidence            48999995 999999999876 5677755 3563211 1 1111221    1122222 22234443      6898774


Q ss_pred             cC-ChHhHHHHHHHHHHcCCCe--------------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          113 FT-DASTVYDNVKQATAFGMRS--------------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       113 FT-~p~~~~~~~~~a~~~Gi~v--------------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      -. .|.. .+.++.|.+.|+|+                    +||-||-+-  --...|..+-+..|.+..+..|  +|+
T Consensus        76 SpgI~~~-~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gn--iG~  152 (468)
T PRK04690         76 SPGISPY-RPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN--IGV  152 (468)
T ss_pred             CCCCCCC-CHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCC--CCc
Confidence            32 1222 22333333333333                    345454321  1123455555666677888888  455


Q ss_pred             HHHHHHHHHhcCCCCCeEEEeccCCC
Q 025154          170 ILLQQAAISASFHYKNVEIVESRPNA  195 (257)
Q Consensus       170 nll~~~a~~l~~~~~DiEIiE~HH~~  195 (257)
                      .++..+.   .....|+-|+|.--.+
T Consensus       153 p~~~~~~---~~~~~~~~VlE~ss~q  175 (468)
T PRK04690        153 PLLEVLA---PQPAPEYWAIELSSYQ  175 (468)
T ss_pred             chHHHhc---cCCCCcEEEEEecCCc
Confidence            4443221   1123577778854433

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=91.45  E-value=0.47  Score=46.42  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKA   58 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~   58 (257)
                      .++||+|+|++|.+|..++-.+...
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~  123 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASG  123 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhc
Confidence            3789999998899999999877654

>KOG2742 consensus Predicted oxidoreductase [General function prediction only]

Probab=91.44  E-value=0.089  Score=49.55  Aligned_cols=108  Identities=15%  Similarity=0.105  Sum_probs=75.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |. |+|.| +|-.-+..+-.+.+.+ +++-++..+..  ..+.+.+   ....+.. ++.+++++.+    .+.|-+..-
T Consensus         3 Pg-v~v~G-Tg~~arv~iP~l~e~~-f~v~A~w~Rt~--~ea~a~a---a~~~v~~~t~~~deiLl~----~~vdlv~i~   70 (367)
T KOG2742|consen    3 PG-VGVFG-TGIFARVLIPLLKEEG-FEVKAIWGRTK--TEAKAKA---AEMNVRKYTSRLDEILLD----QDVDLVCIS   70 (367)
T ss_pred             Cc-eeEec-cChhHhhhhhhhhhcc-chHhhhhchhh--hHHHHhh---hccchhhccccchhhhcc----CCcceeEec
Confidence            45 99999 7999999887776555 88888776521  1111111   1234444 5588888863    456644334


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~  154 (257)
                      -.|..+.+.+..++..|++||+..+--+.++.+.+.++++.
T Consensus        71 lpp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s  111 (367)
T KOG2742|consen   71 LPPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYS  111 (367)
T ss_pred             cCCccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhc
Confidence            46777889999999999999999988666777778777655

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=91.44  E-value=0.45  Score=45.22  Aligned_cols=95  Identities=22%  Similarity=0.261  Sum_probs=62.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcc----hhhhh-cCCCCCCeee----
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGED----IGMVC-DMEQPLEIPV----   90 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d----~g~~~-g~~~~~gv~v----   90 (257)
                      -.|.|+|| |..|.-.+..++ ..++-=.|++|.+                ..|+.    +...+ .......|..    
T Consensus        67 s~VLVVGa-GGLGcPa~~YLa-aaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~  144 (427)
T KOG2017|consen   67 SSVLVVGA-GGLGCPAAQYLA-AAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEF  144 (427)
T ss_pred             ccEEEEcc-CCCCCHHHHHHH-HcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhh
Confidence            47999997 999999998876 4577777888732                11111    11111 1111112222    


Q ss_pred             --ecCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCC
Q 025154           91 --MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        91 --~~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                        .++..+++.      ..|||.|+| ++..-+-.-..|.-.|+|+|+|.-
T Consensus       145 L~~sNa~~Ii~------~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa  189 (427)
T KOG2017|consen  145 LSSSNAFDIIK------QYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA  189 (427)
T ss_pred             ccchhHHHHhh------ccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence              235566674      789999999 466667777899999999999975

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=91.43  E-value=1.3  Score=40.73  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=26.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +|.|+|++|-+|+.+++.+.+ .+.++++..
T Consensus         2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~   31 (343)
T TIGR01472         2 IALITGITGQDGSYLAEFLLE-KGYEVHGLI   31 (343)
T ss_pred             eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence            799999999999999998875 478888754

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK05884 short chain dehydrogenase; Provisional

Probab=91.42  E-value=0.92  Score=39.22  Aligned_cols=30  Identities=20%  Similarity=0.440  Sum_probs=25.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      ||+.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus         1 m~vlItGas~giG~~ia~~l~~-~g~~v~~~   30 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRN-DGHKVTLV   30 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHH-CCCEEEEE
Confidence            4899999999999999998874 57777654

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=91.41  E-value=0.99  Score=42.08  Aligned_cols=33  Identities=21%  Similarity=0.201  Sum_probs=24.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ||+|+|++|.+|..++-.+....-..=...+|.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di   33 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDI   33 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecC
Confidence            799999889999999988775543333345674

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.32  E-value=0.64  Score=43.22  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=25.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..||+|+|+ |..|..++-.+...+-..=...+|.
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~   39 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDI   39 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            369999997 9999999988876544433446774

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=91.20  E-value=1.4  Score=39.11  Aligned_cols=95  Identities=9%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             HHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---cCHHHHHhccccCCCcc-EEEEcC---ChH-------
Q 025154           52 VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARA-VVIDFT---DAS-------  117 (257)
Q Consensus        52 ~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~---~dl~~~l~~~~~~~~~D-VvIDFT---~p~-------  117 (257)
                      ++.+...-++-+.|++-+...            +..+.++   ++.+++.+     ..+| +.+|.|   +|+       
T Consensus        58 Ikai~~~v~vPIIGIiKrd~~------------~s~v~ITptlkeVd~L~~-----~Ga~IIA~DaT~R~RP~~~~~~~i  120 (229)
T COG3010          58 IKAIRAVVDVPIIGIIKRDYP------------DSPVRITPTLKEVDALAE-----AGADIIAFDATDRPRPDGDLEELI  120 (229)
T ss_pred             HHHHHhhCCCCeEEEEecCCC------------CCCceecccHHHHHHHHH-----CCCcEEEeecccCCCCcchHHHHH
Confidence            344555666777777754321            1223333   45556665     4677 467777   466       


Q ss_pred             --------------hHHHHHHHHHHcCCCeEEeCC--CCCH-------HHHHHHHHHhhhcCceEEEccCc
Q 025154          118 --------------TVYDNVKQATAFGMRSVVYVP--HIQL-------ETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       118 --------------~~~~~~~~a~~~Gi~vViGTT--G~s~-------e~~~~L~~~a~~~gipvl~spNf  165 (257)
                                    ...+-...|.+.|..+| |||  |++.       .+++.++++++ .|.+++-=.+|
T Consensus       121 ~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I-GTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~  189 (229)
T COG3010         121 ARIKYPGQLAMADCSTFEEGLNAHKLGFDII-GTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRY  189 (229)
T ss_pred             HHhhcCCcEEEeccCCHHHHHHHHHcCCcEE-ecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCC
Confidence                          22345567888999975 898  7654       45667777776 66777654444

>PRK06153 hypothetical protein; Provisional

Probab=91.19  E-value=1  Score=43.39  Aligned_cols=31  Identities=23%  Similarity=0.214  Sum_probs=24.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .||+|+|+ |..|..++..++...--+|+ ++|
T Consensus       177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD  207 (393)
T PRK06153        177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFD  207 (393)
T ss_pred             CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EEC
Confidence            59999996 99999999999876544444 566

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=91.18  E-value=1.6  Score=38.88  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=24.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      ||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~   29 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL   29 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence            689999999999999998875 46777653

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=91.16  E-value=0.67  Score=44.42  Aligned_cols=60  Identities=23%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|||+| +|+||+.+++.+. .=++++.+ +|+...  +.+        .. ..+.++++++.      .+|+|+--+
T Consensus       116 gktvGIIG-~G~IG~~vA~~l~-a~G~~V~~-~dp~~~--~~~--------~~-~~~~~L~ell~------~sDiI~lh~  175 (378)
T PRK15438        116 DRTVGIVG-VGNVGRRLQARLE-ALGIKTLL-CDPPRA--DRG--------DE-GDFRSLDELVQ------EADILTFHT  175 (378)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCccc--ccc--------cc-cccCCHHHHHh------hCCEEEEeC
Confidence            35899999 5999999999876 56898875 565321  100        00 12467888885      688877443

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=91.16  E-value=1.5  Score=45.23  Aligned_cols=35  Identities=23%  Similarity=0.144  Sum_probs=26.8

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ....||+|+|+ |-||+.|+..++...+++++- +|.
T Consensus       302 ~~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~l-~d~  336 (699)
T TIGR02440       302 AKIKKVGILGG-GLMGGGIASVTATKAGIPVRI-KDI  336 (699)
T ss_pred             ccccEEEEECC-cHHHHHHHHHHHHHcCCeEEE-EeC
Confidence            34568999996 999999998776556887763 563

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.12  E-value=1.9  Score=39.03  Aligned_cols=94  Identities=17%  Similarity=0.179  Sum_probs=51.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeec---CHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMS---DLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv---~v~~---dl~~~l~~~~~~~~~DV  109 (257)
                      -+|.|.|+.|.+|+..++++. ..+.++++...+..   ....+.    .+|+   ..+.   ++.+.+... .+..+|+
T Consensus       140 ~~VLI~ga~g~vG~~aiqlAk-~~G~~Vi~~~~s~~---~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~-~~~gvdv  210 (325)
T TIGR02825       140 ETVMVNAAAGAVGSVVGQIAK-LKGCKVVGAAGSDE---KVAYLK----KLGFDVAFNYKTVKSLEETLKKA-SPDGYDC  210 (325)
T ss_pred             CEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeCCHH---HHHHHH----HcCCCEEEeccccccHHHHHHHh-CCCCeEE
Confidence            379999988999999998655 56888776554321   111111    1222   1122   333333211 1135899


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ++|++-.+.....+......|.=+.+|..
T Consensus       211 v~d~~G~~~~~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       211 YFDNVGGEFSNTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             EEECCCHHHHHHHHHHhCcCcEEEEecch
Confidence            99988655554444444455555556653

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=91.11  E-value=0.54  Score=43.19  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=24.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |||.|.|++|-+|+.+++.+.+. +.+.+-.++
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~   32 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD   32 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence            58999999999999999999865 433333344

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=91.09  E-value=0.69  Score=43.37  Aligned_cols=64  Identities=25%  Similarity=0.234  Sum_probs=44.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -..|||+| +|++|+.+++.+. .=++++.+ +|+.. .++...      ..++.-.+++++++.      .+|+++-..
T Consensus       142 gkTvGIiG-~G~IG~~va~~l~-afgm~v~~-~d~~~-~~~~~~------~~~~~~~~~Ld~lL~------~sDiv~lh~  205 (324)
T COG0111         142 GKTVGIIG-LGRIGRAVAKRLK-AFGMKVIG-YDPYS-PRERAG------VDGVVGVDSLDELLA------EADILTLHL  205 (324)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCeEEE-ECCCC-chhhhc------cccceecccHHHHHh------hCCEEEEcC
Confidence            35899999 5999999998765 56888885 56521 222211      234445688999996      799887554

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.02  E-value=0.66  Score=42.84  Aligned_cols=34  Identities=24%  Similarity=0.183  Sum_probs=25.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      |||+|+|+ |.+|..++..+....-..-+..+|..
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            58999996 99999999887755433445577853

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=91.00  E-value=1  Score=43.86  Aligned_cols=82  Identities=12%  Similarity=0.032  Sum_probs=57.0

Q ss_pred             HhHHHHHHHHHHcC-CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc-CchHHHHHHHHHHHHhcCCCCCeEEEeccCC
Q 025154          117 STVYDNVKQATAFG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAP-TLSIGSILLQQAAISASFHYKNVEIVESRPN  194 (257)
Q Consensus       117 ~~~~~~~~~a~~~G-i~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp-NfSlGvnll~~~a~~l~~~~~DiEIiE~HH~  194 (257)
                      ..+-.++.+..+.| +++++.+--|-+..+++|+.++++.++|++-.. +-+ =|.+..+..+.+....||+=|+.+-=|
T Consensus       115 Tt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~-Pv~Iak~al~~ak~~~~DvvIvDTAGR  193 (451)
T COG0541         115 TTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKD-PVEIAKAALEKAKEEGYDVVIVDTAGR  193 (451)
T ss_pred             hHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCC-HHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            33445555555555 556666767888889999999999999888541 111 123466666666656899999998888


Q ss_pred             CCCCC
Q 025154          195 ARVRY  199 (257)
Q Consensus       195 ~K~Da  199 (257)
                      ...|.
T Consensus       194 l~ide  198 (451)
T COG0541         194 LHIDE  198 (451)
T ss_pred             ccccH
Confidence            88883

>PRK06180 short chain dehydrogenase; Provisional

Probab=90.94  E-value=1.9  Score=38.27  Aligned_cols=81  Identities=20%  Similarity=0.150  Sum_probs=49.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      +.+|.|+|++|.+|+.+++.+.+ .+.+++++ ++..  .....+.               +...     .... +..|+
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~~~~l~---------------~~~~-----~~~~~~~~D~   59 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGT-VRSE--AARADFE---------------ALHP-----DRALARLLDV   59 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHh-CcCEEEEE-eCCH--HHHHHHH---------------hhcC-----CCeeEEEccC
Confidence            35799999999999999998875 58887654 3321  1111111               0000     0121 34678


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      +.++.....+..+.+.  ++.+|+=+.|
T Consensus        60 ~d~~~~~~~~~~~~~~~~~~d~vv~~ag   87 (277)
T PRK06180         60 TDFDAIDAVVADAEATFGPIDVLVNNAG   87 (277)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            8888777776665543  4677765554

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=90.92  E-value=1.5  Score=42.51  Aligned_cols=116  Identities=19%  Similarity=0.282  Sum_probs=67.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-------CCCCeeeecCHHHHHhcc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSI  101 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~-------~~~gv~v~~dl~~~l~~~  101 (257)
                      ...||+|-| +|..|+..++.+.+. +.+|+++-|+.     ..|-|...++...       ...+...... ++++.  
T Consensus       206 ~G~rVaVQG-~GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~--  280 (411)
T COG0334         206 EGARVAVQG-FGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE--  280 (411)
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc--
Confidence            347999999 699999999988765 99999998853     2355543332110       0112222222 56665  


Q ss_pred             ccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       102 ~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT-G-~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                         .++||++=+...... .+++....   ..+|.+-. | .++|..+.+.   ++   .|++.|-+-
T Consensus       281 ---~~cDIl~PcA~~n~I~~~na~~l~---ak~V~EgAN~P~t~eA~~i~~---er---GIl~~PD~l  336 (411)
T COG0334         281 ---VDCDILIPCALENVITEDNADQLK---AKIVVEGANGPTTPEADEILL---ER---GILVVPDIL  336 (411)
T ss_pred             ---ccCcEEcccccccccchhhHHHhh---hcEEEeccCCCCCHHHHHHHH---HC---CCEEcChhh
Confidence               479998865543332 34444332   23777654 3 3443333333   33   577777553

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=90.92  E-value=0.73  Score=44.40  Aligned_cols=123  Identities=15%  Similarity=0.045  Sum_probs=83.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeec---CHHHHHhccccCCCccE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMS---DLTMVLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~---dl~~~l~~~~~~~~~DV  109 (257)
                      +-+|.+.| +|.+.+-++..+.++.+.++.-+.+..   .++.++........|  -+.+   .++...      .+-|+
T Consensus         2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~~~~~~av~ldv~~~~~~L~~~v------~~~D~   71 (445)
T KOG0172|consen    2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVKGINIKAVSLDVADEELALRKEV------KPLDL   71 (445)
T ss_pred             CcceEEec-CccccchHHHHHhhcCCceEEEehhhH---HHHHHHhcCCCccceEEEccchHHHHHhhh------cccce
Confidence            35799999 599999999999999999988766532   233333311000011  1111   222333      36799


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      +|--+....+.-.++.|+.++.++|  |+.|-..+.++|++.+..+|+-++=---.=.|+
T Consensus        72 viSLlP~t~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGi  129 (445)
T KOG0172|consen   72 VISLLPYTFHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGSTIMNEIGLDPGI  129 (445)
T ss_pred             eeeeccchhhHHHHHHHHHhhcccc--cccccCHHHHhhhhhccCCCceEecccccCcch
Confidence            9977777777888899999999987  566777789999999999887766322334444

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=90.87  E-value=2.1  Score=37.19  Aligned_cols=87  Identities=18%  Similarity=0.219  Sum_probs=49.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHH-HHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTM-VLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~-~l~~~~~~~~~DVvIDF  113 (257)
                      .||.|+|+ |+||...++.+.+ .+.+++ ++++. ....+.+++.   ...+.. ...+++ .+      ..+|+||-.
T Consensus        11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~-~~~~l~~l~~---~~~i~~~~~~~~~~~l------~~adlViaa   77 (202)
T PRK06718         11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPE-LTENLVKLVE---EGKIRWKQKEFEPSDI------VDAFLVIAA   77 (202)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCC-CCHHHHHHHh---CCCEEEEecCCChhhc------CCceEEEEc
Confidence            48999996 9999999988775 456655 44442 2223333331   112222 122222 23      378998888


Q ss_pred             CChHhHHHHHHHHHHcCCCeEE
Q 025154          114 TDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      |.-+.....+....+.++.+-+
T Consensus        78 T~d~elN~~i~~~a~~~~lvn~   99 (202)
T PRK06718         78 TNDPRVNEQVKEDLPENALFNV   99 (202)
T ss_pred             CCCHHHHHHHHHHHHhCCcEEE
Confidence            8655555544444466765544

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=90.83  E-value=1.9  Score=37.47  Aligned_cols=80  Identities=15%  Similarity=0.221  Sum_probs=48.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      |+|.|+|++|..|+.+++.+.+ .+.+++. +++..  ..+..+               .+.+.     .++. +-.|++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~-----~~~~~~~~Dl~   56 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQ-QGHKVIA-TGRRQ--ERLQEL---------------KDELG-----DNLYIAQLDVR   56 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHhc-----cceEEEEecCC
Confidence            5799999999999999999875 5788765 44321  111111               01111     1222 346788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+....+.  ++.+|+-..|
T Consensus        57 ~~~~i~~~~~~~~~~~~~id~vi~~ag   83 (248)
T PRK10538         57 NRAAIEEMLASLPAEWRNIDVLVNNAG   83 (248)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            887776666555442  5777775554

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=90.82  E-value=5.7  Score=40.17  Aligned_cols=122  Identities=13%  Similarity=0.108  Sum_probs=69.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecC--HHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD--LTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~d--l~~~l~~~~~~~~~DVvI  111 (257)
                      ..+|.|+| +||+|+.+++.+. ..+.+++ ++|.+.  +.+..+.    +.|.++ +.|  -.+++++ +.-.++|++|
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~~L~~-agi~~A~~vv  469 (601)
T PRK03659        400 KPQVIIVG-FGRFGQVIGRLLM-ANKMRIT-VLERDI--SAVNLMR----KYGYKVYYGDATQLELLRA-AGAEKAEAIV  469 (601)
T ss_pred             cCCEEEec-CchHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hCCCeEEEeeCCCHHHHHh-cCCccCCEEE
Confidence            46899999 5999999999876 4567765 466431  1122221    234433 222  1223321 0113678766


Q ss_pred             EcC-ChHhHHHHHHHHHHcC--CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154          112 DFT-DASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus       112 DFT-~p~~~~~~~~~a~~~G--i~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                      -.+ .++.....+..+.+..  ++++. . --++++.++|++    .|+-.++-.+|--+..+.
T Consensus       470 ~~~~d~~~n~~i~~~~r~~~p~~~Iia-R-a~~~~~~~~L~~----~Ga~~vv~e~~es~l~l~  527 (601)
T PRK03659        470 ITCNEPEDTMKIVELCQQHFPHLHILA-R-ARGRVEAHELLQ----AGVTQFSRETFSSALELG  527 (601)
T ss_pred             EEeCCHHHHHHHHHHHHHHCCCCeEEE-E-eCCHHHHHHHHh----CCCCEEEccHHHHHHHHH
Confidence            554 4555556666666654  34443 2 244566666755    566777777776666653

>PRK06953 short chain dehydrogenase; Provisional

Probab=90.82  E-value=1.6  Score=37.23  Aligned_cols=79  Identities=20%  Similarity=0.286  Sum_probs=47.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      |.++.|+|++|.+|+.+++.+.+ .+.+++.+ ++..  .+..++                  ..     .... +..|+
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~-~r~~--~~~~~~------------------~~-----~~~~~~~~D~   53 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRA-DGWRVIAT-ARDA--AALAAL------------------QA-----LGAEALALDV   53 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHh-CCCEEEEE-ECCH--HHHHHH------------------Hh-----ccceEEEecC
Confidence            45789999999999999998874 58887664 4321  111111                  10     0111 45677


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      +.++.....+......++.+|+=+.|.
T Consensus        54 ~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953         54 ADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             CCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            777666554443333357777766654

>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional

Probab=90.74  E-value=2.3  Score=41.75  Aligned_cols=86  Identities=16%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      -++.|+|+ |.-|+.+++.+.+++  +++++|.+|.+..+   ..      -.|+|+..+.+++.. ..+....|++|-.
T Consensus       147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~---~~------i~gvPVlg~~d~l~~-~~~~~~v~vIIAi  215 (476)
T PRK15204        147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASD---AE------INMLPVIKDTEIIWD-LNRTGDVHYILAY  215 (476)
T ss_pred             CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccc---cc------cCCCcccCCHHHHHH-HHHhCCCcEEEEe
Confidence            47999995 999999999887654  78999999853211   11      236777666543311 0011356765543


Q ss_pred             CC--hHhHHHHHHHHHHcCCC
Q 025154          114 TD--ASTVYDNVKQATAFGMR  132 (257)
Q Consensus       114 T~--p~~~~~~~~~a~~~Gi~  132 (257)
                      ..  .+...+.++.+.+.|+.
T Consensus       216 p~~~~~~r~~il~~l~~~gv~  236 (476)
T PRK15204        216 EYTELEKTHFWLRELSKHHCR  236 (476)
T ss_pred             CcCcHHHHHHHHHHHhhcCCe
Confidence            32  23445778888888885

>PRK07904 short chain dehydrogenase; Provisional

Probab=90.73  E-value=2.5  Score=37.18  Aligned_cols=87  Identities=14%  Similarity=0.063  Sum_probs=49.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      ..+|.|.|++|++|+.+++.+.+..+.+++.. ++.. .....++.              +++... . ..++. +-.|.
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~-~r~~-~~~~~~~~--------------~~l~~~-~-~~~v~~~~~D~   69 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLA-ALPD-DPRRDAAV--------------AQMKAA-G-ASSVEVIDFDA   69 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEE-eCCc-chhHHHHH--------------HHHHhc-C-CCceEEEEecC
Confidence            45799999999999999999887656777654 3321 01011110              111110 0 00111 34677


Q ss_pred             CChHhHHHHHHHHHHc-CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF-GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~-Gi~vViGTTG  139 (257)
                      +.++...+.++.+.+. ++.+++-..|
T Consensus        70 ~~~~~~~~~~~~~~~~g~id~li~~ag   96 (253)
T PRK07904         70 LDTDSHPKVIDAAFAGGDVDVAIVAFG   96 (253)
T ss_pred             CChHHHHHHHHHHHhcCCCCEEEEeee
Confidence            7777777766666553 5776664444

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.72  E-value=1.1  Score=42.00  Aligned_cols=98  Identities=19%  Similarity=0.198  Sum_probs=56.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeeec---C-HHHHHhccccCCCccEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMS---D-LTMVLGSISQSKARAVVI  111 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g-~~~g~~~~~gv~v~~---d-l~~~l~~~~~~~~~DVvI  111 (257)
                      +|+|+|+ |-+|-..+..+.. -+..-+-++|....-.+.. ++.+    ..+.+..   + .+++.+ +..+..+|++|
T Consensus       171 ~V~V~Ga-GpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g----~~~~~~~~~~~~~~~~~~-~t~g~g~D~vi  243 (350)
T COG1063         171 TVVVVGA-GPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGG----ADVVVNPSEDDAGAEILE-LTGGRGADVVI  243 (350)
T ss_pred             EEEEECC-CHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCC----CeEeecCccccHHHHHHH-HhCCCCCCEEE
Confidence            7999996 9999998876554 4544444557431011111 1111    1111111   1 111211 11123599999


Q ss_pred             EcC-ChHhHHHHHHHHHHcCCCeEEeCCCCC
Q 025154          112 DFT-DASTVYDNVKQATAFGMRSVVYVPHIQ  141 (257)
Q Consensus       112 DFT-~p~~~~~~~~~a~~~Gi~vViGTTG~s  141 (257)
                      |+| .+.+...-+..+...|.=+++|+++-.
T Consensus       244 e~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         244 EAVGSPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             ECCCCHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            999 566666777777788888889999654

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=90.70  E-value=1.5  Score=40.12  Aligned_cols=87  Identities=14%  Similarity=0.175  Sum_probs=53.2

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVI  111 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvI  111 (257)
                      ..+.++.|.||++++|+++++.++ ..++.|+-+..+.   ....++.           .++++...     -.++ .-+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~---~kL~~la-----------~~l~~~~~-----v~v~vi~~   63 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLA-RRGYNLILVARRE---DKLEALA-----------KELEDKTG-----VEVEVIPA   63 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcH---HHHHHHH-----------HHHHHhhC-----ceEEEEEC
Confidence            345689999999999999999887 4577777544321   0111111           11111110     1234 257


Q ss_pred             EcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.|.|+..........+.  .+.++|=--|
T Consensus        64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG   93 (265)
T COG0300          64 DLSDPEALERLEDELKERGGPIDVLVNNAG   93 (265)
T ss_pred             cCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence            888888888777776666  6777765433

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=90.66  E-value=1.3  Score=41.01  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=27.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .+||.|+|++|-+|+.+++.+.+ .+.++++..+
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r   42 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLR   42 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            35899999999999999999875 5788887654

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=90.64  E-value=2.8  Score=40.03  Aligned_cols=112  Identities=13%  Similarity=0.157  Sum_probs=56.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |||+|+|. |.=...+++.+.++++...+.+ ++...|..  ...    + .+.+ +.|.+++++ +++..++|++|-.+
T Consensus         1 ~kvliiG~-G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~~--~~~----~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~   70 (420)
T PRK00885          1 MKVLVIGS-GGREHALAWKLAQSPLVEKVYV-APGNAGTA--LLA----E-NVVIDVTDIEALVA-FAKEEGIDLTVVGP   70 (420)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEE-eCCCHHHH--hhc----c-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence            69999995 7655667777777766544333 33221110  000    1 1111 356666543 23335789877443


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCC--CC-HHHHHHHHHHhhhcCce
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPH--IQ-LETVSALSAFCDKASMG  158 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG--~s-~e~~~~L~~~a~~~gip  158 (257)
                      ...........+.+.|++++ |.+-  .. .......+++.++.|+|
T Consensus        71 e~~l~~~~~~~l~~~gi~~~-g~~~~~~~~~~dK~~~k~~l~~~gip  116 (420)
T PRK00885         71 EAPLVAGIVDAFRAAGLPIF-GPTKAAAQLEGSKAFAKDFMARYGIP  116 (420)
T ss_pred             chHHHHHHHHHHHHCCCcEE-CcCHHHHHHHcCHHHHHHHHHHcCCC
Confidence            32333455566677888865 4331  00 01112345555565665

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=90.61  E-value=1.8  Score=39.50  Aligned_cols=103  Identities=21%  Similarity=0.235  Sum_probs=61.5

Q ss_pred             ccceeeeeccccccccccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC
Q 025154            4 LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME   83 (257)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~   83 (257)
                      .||-.--|..-||+..-.+.--|-+..-.+..-||.|.|+.|..|..+++++...-+-+-|-..|..+   +-..+...+
T Consensus        13 ag~~~~~R~~~Isp~~v~~~A~FH~~s~~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~K---Pp~~V~~~G   89 (366)
T KOG2774|consen   13 AGCWLPVRRNGISPLPVDPLARFHTISQTQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVK---PPANVTDVG   89 (366)
T ss_pred             CcccccccccCCCcccCCcccccccccccCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccC---CchhhcccC
Confidence            35655566666665554444333333334455689999999999999999998877766554444211   011111110


Q ss_pred             CC---CCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           84 QP---LEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        84 ~~---~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                       +   .++.-+.+++++.-.    ...|-+|.||
T Consensus        90 -PyIy~DILD~K~L~eIVVn----~RIdWL~HfS  118 (366)
T KOG2774|consen   90 -PYIYLDILDQKSLEEIVVN----KRIDWLVHFS  118 (366)
T ss_pred             -CchhhhhhccccHHHhhcc----cccceeeeHH
Confidence             1   123335677776543    6789999997

>PRK08267 short chain dehydrogenase; Provisional

Probab=90.58  E-value=1.5  Score=38.32  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      |.++.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.               +.+..    ...+ +.+|+
T Consensus         1 mk~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~~----~~~~~~~~D~   57 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAA-EGWRVGA-YDINE--AGLAALA---------------AELGA----GNAWTGALDV   57 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHH-CCCeEEE-EeCCH--HHHHHHH---------------HHhcC----CceEEEEecC
Confidence            45699999999999999998875 5777664 34321  1111110               11100    1222 45788


Q ss_pred             CChHhHHHHHHHHHH---cCCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATA---FGMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~---~Gi~vViGTTG  139 (257)
                      +.++...+.+..+.+   .++.+|+=+.|
T Consensus        58 ~~~~~v~~~~~~~~~~~~~~id~vi~~ag   86 (260)
T PRK08267         58 TDRAAWDAALADFAAATGGRLDVLFNNAG   86 (260)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence            888887777766654   36777776655

>PRK06988 putative formyltransferase; Provisional

Probab=90.54  E-value=0.64  Score=43.21  Aligned_cols=71  Identities=17%  Similarity=0.340  Sum_probs=45.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--CCCc----chhhhhcCCCCCCeeeec--CH-----HHHHhcc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGE----DIGMVCDMEQPLEIPVMS--DL-----TMVLGSI  101 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--~~g~----d~g~~~g~~~~~gv~v~~--dl-----~~~l~~~  101 (257)
                      ||||++.| ++.+|....+.+.+ .++++++++..+  ..+.    ++.+++   .+.|++++.  ++     .+.+.+ 
T Consensus         2 ~mkIvf~G-s~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~~-   75 (312)
T PRK06988          2 KPRAVVFA-YHNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVAA-   75 (312)
T ss_pred             CcEEEEEe-CcHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHHh-
Confidence            68999999 79999999998875 578999888642  1111    233333   356777643  22     222332 


Q ss_pred             ccCCCccEEEEcC
Q 025154          102 SQSKARAVVIDFT  114 (257)
Q Consensus       102 ~~~~~~DVvIDFT  114 (257)
                         .++|++|-+.
T Consensus        76 ---~~~Dliv~~~   85 (312)
T PRK06988         76 ---AAPDFIFSFY   85 (312)
T ss_pred             ---cCCCEEEEeh
Confidence               5899877664

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=90.54  E-value=0.64  Score=43.15  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=24.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ||+|+|+ |.+|..++-.+...+-+.=...+|.
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di   32 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDV   32 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            7999997 9999999988776544443446774

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.40  E-value=1.4  Score=43.96  Aligned_cols=63  Identities=21%  Similarity=0.234  Sum_probs=42.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+... .+..      ...++... ++++++.      .+|+|+-..
T Consensus       140 gktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~------~~~g~~~~-~l~ell~------~aDiV~l~l  202 (526)
T PRK13581        140 GKTLGIIG-LGRIGSEVAKRAK-AFGMKVIA-YDPYIS-PERA------AQLGVELV-SLDELLA------RADFITLHT  202 (526)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHH------HhcCCEEE-cHHHHHh------hCCEEEEcc
Confidence            35899999 5999999999876 45888764 564211 1111      12344444 8999985      689877554

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=90.40  E-value=0.48  Score=41.63  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=28.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |+||.|+||+|.+|+.+++.+.+ .+.++.+...
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R   49 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVR   49 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEec
Confidence            57999999999999999998875 5788877654

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=90.39  E-value=1.9  Score=41.80  Aligned_cols=93  Identities=14%  Similarity=0.059  Sum_probs=49.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .+|||.|+| +|.==.+++..+.+++....+.+. +...|..  ...   ....+.+ ..|.+++++ .++..++|.||-
T Consensus         3 ~~~kvLviG-~g~rehal~~~~~~~~~~~~~~~~-pgn~g~~--~~~---~~~~~~~~~~d~~~l~~-~a~~~~iD~Vv~   74 (426)
T PRK13789          3 VKLKVLLIG-SGGRESAIAFALRKSNLLSELKVF-PGNGGFP--DDE---LLPADSFSILDKSSVQS-FLKSNPFDLIVV   74 (426)
T ss_pred             CCcEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEE-CCchHHh--ccc---cccccCcCcCCHHHHHH-HHHHcCCCEEEE
Confidence            468999999 477777788888877755433332 2221110  000   0001112 356666553 334467997773


Q ss_pred             cCChHhHHHHHHHHHHcCCCeE
Q 025154          113 FTDASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      ...-......+..+.+.|+|++
T Consensus        75 g~E~~l~~glad~~~~~Gip~~   96 (426)
T PRK13789         75 GPEDPLVAGFADWAAELGIPCF   96 (426)
T ss_pred             CCchHHHHHHHHHHHHcCCCcC
Confidence            3222222345566677888854

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=90.39  E-value=0.7  Score=44.45  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA   58 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~   58 (257)
                      ++||+|+||+|++|..++-.+...
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~   67 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASG   67 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhc
Confidence            699999998899999999877644

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=90.32  E-value=1.9  Score=43.78  Aligned_cols=112  Identities=14%  Similarity=0.178  Sum_probs=75.8

Q ss_pred             ceEEEEcCCCh---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      --|+|+||+++   .|..+.+.+.+..+=++..+ .+.     ..++      .|++.|++..++-+      .+|+.|-
T Consensus        11 ~svavigas~~~~~vg~~i~~nL~~~g~g~i~PV-np~-----~~~v------~G~~ay~s~~~lp~------~~dlav~   72 (598)
T COG1042          11 KSIAVIGASERPGKLGYEILRNLLEYGQGKIYPV-NPK-----YDEV------LGVKAYTSVADLPD------APDLAVI   72 (598)
T ss_pred             ceEEEeeccCCcchhHHHHHHHHHhcCCCceEec-Ccc-----cccc------ccccccchHhhCCC------CCCeeEE
Confidence            35999999876   67778887775543333332 121     1122      36778889888764      7999998


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCH------HHHHHHHHHhhhcCceEEEccCch
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQL------ETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~------e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      .+.+..+.+.++.|-+.|+..++--+ ||.+      +-.+++.++|+++++. ++.||--
T Consensus        73 ~v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~r-ligPn~~  132 (598)
T COG1042          73 VVPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMR-IIGPNCL  132 (598)
T ss_pred             EechhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCce-Eeccccc
Confidence            99999999999999999987765544 6643      1223455578877764 4457743

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=90.29  E-value=1.4  Score=38.03  Aligned_cols=85  Identities=18%  Similarity=0.204  Sum_probs=49.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCc-cEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDF  113 (257)
                      |.+|.|.|++|.+|+.+++.+.+ .+.+++....+..  +....+               .+.+..  ...++ -+..|.
T Consensus         2 ~k~ilItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~Dl   61 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAA-RGWSVGINYARDA--AAAEET---------------ADAVRA--AGGRACVVAGDV   61 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH---------------HHHHHh--cCCcEEEEEecc
Confidence            45899999999999999998875 5778765443321  001111               011110  00011 134677


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      +.++...+.+..+.+.  ++.+|+-..|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~id~li~~ag   89 (248)
T PRK06947         62 ANEADVIAMFDAVQSAFGRLDALVNNAG   89 (248)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            8888877777665542  4677876655

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=90.21  E-value=1.6  Score=40.48  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=25.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      |||+|+|++|..|..++..+...+-. +|+. +|.
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~l-vd~   34 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINL-ISR   34 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EEC
Confidence            69999998899999999988765433 4554 343

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PLN02572 UDP-sulfoquinovose synthase

Probab=90.14  E-value=0.52  Score=45.70  Aligned_cols=31  Identities=35%  Similarity=0.432  Sum_probs=26.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      ++||.|+|++|.+|+.+++.+.+ .+.+++++
T Consensus        47 ~k~VLVTGatGfIGs~Lv~~L~~-~G~~V~~~   77 (442)
T PLN02572         47 KKKVMVIGGDGYCGWATALHLSK-RGYEVAIV   77 (442)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCeEEEE
Confidence            57899999999999999999885 47887754

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=90.12  E-value=2  Score=43.19  Aligned_cols=34  Identities=15%  Similarity=0.125  Sum_probs=25.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      -+|.|.|++|-.|+++.+.+++. +-+-+-.+++.
T Consensus       251 K~vLVTGagGSiGsel~~qil~~-~p~~i~l~~~~  284 (588)
T COG1086         251 KTVLVTGGGGSIGSELCRQILKF-NPKEIILFSRD  284 (588)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhc-CCCEEEEecCc
Confidence            48999999999999999999865 33333356643

>COG2403 Predicted GTPase [General function prediction only]

Probab=90.07  E-value=1.4  Score=42.29  Aligned_cols=161  Identities=17%  Similarity=0.184  Sum_probs=90.9

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-c-ch--hhhhcCCCCCCeeee-----cCHHHHHhcccc
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-E-DI--GMVCDMEQPLEIPVM-----SDLTMVLGSISQ  103 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~-d~--g~~~g~~~~~gv~v~-----~dl~~~l~~~~~  103 (257)
                      .++.||.+.|+.|+==..--.++...+.+++++.......| . ..  .++.|...+.|+|++     ++++.++.+   
T Consensus         4 ~a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire---   80 (449)
T COG2403           4 KARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIRE---   80 (449)
T ss_pred             CCceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHHH---
Confidence            45789999998666544444445667888888776521111 0 00  112222236788885     346666665   


Q ss_pred             CCCcc-EEEEcC--ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE--EccCchHHHH-HHHHHHH
Q 025154          104 SKARA-VVIDFT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL--IAPTLSIGSI-LLQQAAI  177 (257)
Q Consensus       104 ~~~~D-VvIDFT--~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl--~spNfSlGvn-ll~~~a~  177 (257)
                       .++| +|+|.|  +++....++...+..|.....    |-+-+  .+..+ ++   |++  .+.-.-.|=. +-..+++
T Consensus        81 -~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~~----~gP~e--t~~~~-ek---PviaV~atrtg~GKsaVS~~v~r  149 (449)
T COG2403          81 -KDVDIVVLAYSDVSYEHVFRIASRVLSAGADFKE----LGPKE--TMLKL-EK---PVIAVTATRTGVGKSAVSRYVAR  149 (449)
T ss_pred             -cCCCeEEEEcccCCHHHHHHHHHHHHhCCceeEE----eCccH--Hhhhh-cC---ceEEEEEeccccchhHHHHHHHH
Confidence             7999 999999  688999999999999987763    33211  12211 22   444  3333333333 3344455


Q ss_pred             HhcCCCCCeEEEeccCCCCCCCCCccHHHH
Q 025154          178 SASFHYKNVEIVESRPNARVRYMTRTLISM  207 (257)
Q Consensus       178 ~l~~~~~DiEIiE~HH~~K~DapSGTa~~l  207 (257)
                      .|...+|.+=++-+---..-|-+-.|-..+
T Consensus       150 ~l~ergyrv~vVrhPmiy~~~~ieitve~~  179 (449)
T COG2403         150 LLRERGYRVCVVRHPMIYRGDRIEITVERL  179 (449)
T ss_pred             HHHHcCCceEEEecCceecCCchhhhHHHH
Confidence            555456666555432222223344554444

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=89.87  E-value=0.24  Score=45.03  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=18.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHh
Q 025154           36 IKVIINGAVKEIGRAAVIAVTK   57 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~   57 (257)
                      .||.++|| |..|-.+++++..
T Consensus        26 ~riv~~GA-GsAg~gia~ll~~   46 (254)
T cd00762          26 HKVLFNGA-GAAALGIANLIVX   46 (254)
T ss_pred             cEEEEECc-CHHHHHHHHHHHH
Confidence            69999997 9999999998864

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=89.87  E-value=1.5  Score=40.56  Aligned_cols=32  Identities=16%  Similarity=0.205  Sum_probs=24.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +||+|+|+ |.||..++..++...-.+ +-.+|.
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi   33 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDV   33 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeC
Confidence            59999996 999999998877543236 556774

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=89.84  E-value=2.5  Score=38.42  Aligned_cols=87  Identities=14%  Similarity=0.058  Sum_probs=52.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      +|+|+|+ |.+|...++.+. ..+.+.+.+++...  ... +.++   ...  +.+ .++...     ..+|++||++--
T Consensus       147 ~vlV~G~-G~vG~~a~q~ak-~~G~~~v~~~~~~~--~rl-~~a~---~~~--~i~-~~~~~~-----~g~Dvvid~~G~  210 (308)
T TIGR01202       147 PDLIVGH-GTLGRLLARLTK-AAGGSPPAVWETNP--RRR-DGAT---GYE--VLD-PEKDPR-----RDYRAIYDASGD  210 (308)
T ss_pred             cEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCH--HHH-Hhhh---hcc--ccC-hhhccC-----CCCCEEEECCCC
Confidence            6999995 999999998665 45787666666421  001 1111   111  111 111111     368999999864


Q ss_pred             -HhHHHHHHHHHHcCCCeEEeCCC
Q 025154          117 -STVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       117 -~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                       ......+......|.=+++|.++
T Consensus       211 ~~~~~~~~~~l~~~G~iv~~G~~~  234 (308)
T TIGR01202       211 PSLIDTLVRRLAKGGEIVLAGFYT  234 (308)
T ss_pred             HHHHHHHHHhhhcCcEEEEEeecC
Confidence             44455566666777777788653

>PLN02602 lactate dehydrogenase

Probab=89.82  E-value=1  Score=42.62  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=25.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||+|+|+ |.+|..++-.+...+-..=...+|.
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi   70 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDV   70 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            69999996 9999999988775544433446774

>PRK06179 short chain dehydrogenase; Provisional

Probab=89.75  E-value=6.7  Score=34.35  Aligned_cols=31  Identities=29%  Similarity=0.464  Sum_probs=25.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++...
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~~   35 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLAR-AGYRVFGTS   35 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            4699999999999999998875 578876543

>PRK07578 short chain dehydrogenase; Provisional

Probab=89.71  E-value=2.4  Score=35.53  Aligned_cols=29  Identities=41%  Similarity=0.589  Sum_probs=24.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      |++.|+|++|.+|+.+++.+.+.  .+++..
T Consensus         1 ~~vlItGas~giG~~la~~l~~~--~~vi~~   29 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR--HEVITA   29 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc--CcEEEE
Confidence            47999999999999999998765  565543

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=89.69  E-value=1.5  Score=42.02  Aligned_cols=59  Identities=17%  Similarity=0.079  Sum_probs=39.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .+|||+| +|.||+.+++.+. .-++++.+ +|+.....          . +..-+.++++++.      .+|+|+-..
T Consensus       117 ktvGIIG-~G~IG~~va~~l~-a~G~~V~~-~Dp~~~~~----------~-~~~~~~~l~ell~------~aDiV~lh~  175 (381)
T PRK00257        117 RTYGVVG-AGHVGGRLVRVLR-GLGWKVLV-CDPPRQEA----------E-GDGDFVSLERILE------ECDVISLHT  175 (381)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCccccc----------c-cCccccCHHHHHh------hCCEEEEeC
Confidence            5899999 5999999999876 46888865 56532110          0 1112457888885      688877443

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=89.69  E-value=2.2  Score=42.10  Aligned_cols=66  Identities=14%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|++|+.+++.+. .-+++++ +++.... + .....    ..|+. +.++++++.      .+|+||..+
T Consensus       254 GKtVgVIG-~G~IGr~vA~rL~-a~Ga~Vi-V~e~dp~-~-a~~A~----~~G~~-~~~leell~------~ADIVI~at  317 (476)
T PTZ00075        254 GKTVVVCG-YGDVGKGCAQALR-GFGARVV-VTEIDPI-C-ALQAA----MEGYQ-VVTLEDVVE------TADIFVTAT  317 (476)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCch-h-HHHHH----hcCce-eccHHHHHh------cCCEEEECC
Confidence            45899999 5999999999876 4577754 4543210 0 00000    12333 246788875      799999876


Q ss_pred             Ch
Q 025154          115 DA  116 (257)
Q Consensus       115 ~p  116 (257)
                      -.
T Consensus       318 Gt  319 (476)
T PTZ00075        318 GN  319 (476)
T ss_pred             Cc
Confidence            43

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=89.65  E-value=1.7  Score=39.48  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=26.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      ..+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~   36 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLF-RGYTINATV   36 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence            46899999999999999998875 578876644

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.60  E-value=1.3  Score=37.65  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=27.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +.+|.|+|++|.+|+.+++.+.+ .+.+++....+
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~-~g~~v~~~~~~   39 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLAR-AGADVVVHYRS   39 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCC
Confidence            45899999999999999998874 57777554543

>PRK05866 short chain dehydrogenase; Provisional

Probab=89.56  E-value=4.7  Score=36.42  Aligned_cols=30  Identities=30%  Similarity=0.535  Sum_probs=25.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus        41 k~vlItGasggIG~~la~~La~-~G~~Vi~~   70 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFAR-RGATVVAV   70 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE
Confidence            4799999999999999999875 47887654

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=89.52  E-value=0.86  Score=42.63  Aligned_cols=28  Identities=29%  Similarity=0.580  Sum_probs=23.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      ||+|+| .|..|+.+++.+.+ -+++++.+
T Consensus         1 kililG-~g~~~~~l~~aa~~-~G~~v~~~   28 (380)
T TIGR01142         1 RVLLLG-SGELGKEVAIEAQR-LGVEVIAV   28 (380)
T ss_pred             CEEEEC-CCHHHHHHHHHHHH-cCCEEEEE
Confidence            799999 49999999998665 58887654

This enzyme is an alternative to PurN (TIGR00639)

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.49  E-value=6.9  Score=38.14  Aligned_cols=30  Identities=17%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -||+|+| .|+-|+..++.+. . +.+++ +.|.
T Consensus         7 ~~v~v~G-~G~sG~a~~~~L~-~-g~~v~-v~D~   36 (454)
T PRK01368          7 QKIGVFG-LGKTGISVYEELQ-N-KYDVI-VYDD   36 (454)
T ss_pred             CEEEEEe-ecHHHHHHHHHHh-C-CCEEE-EECC
Confidence            4899999 5999999999887 4 77754 5773

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=89.47  E-value=1.6  Score=39.59  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++.+++
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~   38 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRD   38 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECC
Confidence            5899999999999999998875 57888877654

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=89.46  E-value=0.67  Score=44.88  Aligned_cols=68  Identities=16%  Similarity=0.192  Sum_probs=42.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ..||.|+|+ |.||+.+++.+.. .+..-+-++++..  ..+..++.   .++   +.-++++.+.+.      .+|+||
T Consensus       181 ~kkvlviGa-G~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La~---~~~~~~~~~~~~l~~~l~------~aDiVI  247 (414)
T PRK13940        181 SKNVLIIGA-GQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKITS---AFRNASAHYLSELPQLIK------KADIII  247 (414)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHH---HhcCCeEecHHHHHHHhc------cCCEEE
Confidence            358999995 9999999999875 4554444555431  11222321   121   222466667774      799999


Q ss_pred             EcCC
Q 025154          112 DFTD  115 (257)
Q Consensus       112 DFT~  115 (257)
                      -.|.
T Consensus       248 ~aT~  251 (414)
T PRK13940        248 AAVN  251 (414)
T ss_pred             ECcC
Confidence            8873

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=89.39  E-value=2  Score=41.64  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=66.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhhhh-cCCCCCCeeeecCHHHHHhcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGMVC-DMEQPLEIPVMSDLTMVLGSI  101 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------~~g~------d~g~~~-g~~~~~gv~v~~dl~~~l~~~  101 (257)
                      ++|+|+| .|-+|--++-+.+ ..++.++| +|.+       ..|+      +..+++ ..-.......++|.+++-   
T Consensus        10 ~~I~ViG-LGYVGLPlA~~fA-~~G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~---   83 (436)
T COG0677          10 ATIGVIG-LGYVGLPLAAAFA-SAGFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK---   83 (436)
T ss_pred             eEEEEEc-cccccHHHHHHHH-HcCCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc---
Confidence            7999999 7999999997655 67899887 4421       1121      112111 000122356677777663   


Q ss_pred             ccCCCccEEEEcC-------------ChHhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHH
Q 025154          102 SQSKARAVVIDFT-------------DASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSA  150 (257)
Q Consensus       102 ~~~~~~DVvIDFT-------------~p~~~~~~~~~a~~~Gi~vViGTT---G~s~e~~~~L~~  150 (257)
                          .+||+|..-             .-+.+.+.+...++.|-=||++.|   |-+++-...|.+
T Consensus        84 ----~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle  144 (436)
T COG0677          84 ----ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE  144 (436)
T ss_pred             ----cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence                689887652             123445667777899999999987   777665555544

>PLN02494 adenosylhomocysteinase

Probab=89.38  E-value=1.8  Score=42.82  Aligned_cols=83  Identities=13%  Similarity=0.124  Sum_probs=48.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      --+|+|+| +|++|+.+++.+. .-+++++. ++.... + ..+..    ..|..+. ++++++.      .+|++|+.|
T Consensus       254 GKtVvViG-yG~IGr~vA~~ak-a~Ga~VIV-~e~dp~-r-~~eA~----~~G~~vv-~leEal~------~ADVVI~tT  317 (477)
T PLN02494        254 GKVAVICG-YGDVGKGCAAAMK-AAGARVIV-TEIDPI-C-ALQAL----MEGYQVL-TLEDVVS------EADIFVTTT  317 (477)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCch-h-hHHHH----hcCCeec-cHHHHHh------hCCEEEECC
Confidence            45899999 5999999999876 44787554 553210 0 00110    1233332 6778774      689999876


Q ss_pred             ChHh-HHHHHHHHHHcCCCe
Q 025154          115 DAST-VYDNVKQATAFGMRS  133 (257)
Q Consensus       115 ~p~~-~~~~~~~a~~~Gi~v  133 (257)
                      .... ........++.|--+
T Consensus       318 Gt~~vI~~e~L~~MK~GAiL  337 (477)
T PLN02494        318 GNKDIIMVDHMRKMKNNAIV  337 (477)
T ss_pred             CCccchHHHHHhcCCCCCEE
Confidence            5433 223333344444333

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.33  E-value=7.8  Score=37.25  Aligned_cols=30  Identities=30%  Similarity=0.288  Sum_probs=23.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ||.|+|+ |+.|...++.+. ..+.++. ++|.
T Consensus         2 ~v~viG~-G~sG~s~a~~l~-~~G~~V~-~~D~   31 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLK-AQGWEVV-VSDR   31 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECC
Confidence            7999995 999999987665 5678755 5774

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=89.27  E-value=3.5  Score=33.90  Aligned_cols=101  Identities=15%  Similarity=0.206  Sum_probs=56.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc---
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF---  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF---  113 (257)
                      +|+++.=+|.||..+...+. +.++-+..++..   |.++          ++    +..++++.+.+++...|+.-+   
T Consensus         3 ~valisQSG~~~~~~~~~~~-~~g~g~s~~vs~---Gn~~----------dv----~~~d~l~~~~~D~~t~~I~ly~E~   64 (138)
T PF13607_consen    3 GVALISQSGALGTAILDWAQ-DRGIGFSYVVSV---GNEA----------DV----DFADLLEYLAEDPDTRVIVLYLEG   64 (138)
T ss_dssp             SEEEEES-HHHHHHHHHHHH-HTT-EESEEEE----TT-S----------SS-----HHHHHHHHCT-SS--EEEEEES-
T ss_pred             CEEEEECCHHHHHHHHHHHH-HcCCCeeEEEEe---Cccc----------cC----CHHHHHHHHhcCCCCCEEEEEccC
Confidence            58888889999999998765 557777666653   2111          11    233444333334566676655   


Q ss_pred             -CChHhHHHHHHHHHHcCCCeEEeCCCCCHH--------------HHHHHHHHhhhcC
Q 025154          114 -TDASTVYDNVKQATAFGMRSVVYVPHIQLE--------------TVSALSAFCDKAS  156 (257)
Q Consensus       114 -T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e--------------~~~~L~~~a~~~g  156 (257)
                       ..|+...+.++.+..+ ||||+=++|-+++              ..+..+++.++.|
T Consensus        65 ~~d~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aG  121 (138)
T PF13607_consen   65 IGDGRRFLEAARRAARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAG  121 (138)
T ss_dssp             -S-HHHHHHHHHHHCCC-S-EEEEE---------------------HHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcC
Confidence             4688888888888777 9999888775332              2345667777733

>PRK07825 short chain dehydrogenase; Provisional

Probab=89.25  E-value=2.9  Score=36.84  Aligned_cols=79  Identities=20%  Similarity=0.144  Sum_probs=49.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+..++.. +++.  ...                  +++...+   ..+. +..|++
T Consensus         6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~~-~r~~--~~~------------------~~~~~~~---~~~~~~~~D~~   60 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAA-LGARVAIG-DLDE--ALA------------------KETAAEL---GLVVGGPLDVT   60 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE-ECCH--HHH------------------HHHHHHh---ccceEEEccCC
Confidence            5799999999999999998875 57776543 3320  001                  1111100   0122 356889


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.++|-..|
T Consensus        61 ~~~~~~~~~~~~~~~~~~id~li~~ag   87 (273)
T PRK07825         61 DPASFAAFLDAVEADLGPIDVLVNNAG   87 (273)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888887777766553  6777776655

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=89.21  E-value=6.3  Score=33.84  Aligned_cols=82  Identities=15%  Similarity=0.080  Sum_probs=48.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE---EEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vIDF  113 (257)
                      .+.|+|++|.+|+.+++.+.+ .+.+++...++.. . ...+.              ++++..     ...++   ..|.
T Consensus         5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~~~~-~-~~~~~--------------~~~~~~-----~~~~~~~~~~D~   62 (246)
T PRK12938          5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCGPNS-P-RRVKW--------------LEDQKA-----LGFDFIASEGNV   62 (246)
T ss_pred             EEEEECCCChHHHHHHHHHHH-cCCEEEEEcCCCh-H-HHHHH--------------HHHHHh-----cCCcEEEEEcCC
Confidence            579999999999999999875 4778776544211 0 00000              011111     12233   3677


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      +.++...+.+..+.+.  ++.+|+=+.|+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~id~li~~ag~   91 (246)
T PRK12938         63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGI   91 (246)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            7777776666655443  67777766664

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=89.21  E-value=3.2  Score=38.45  Aligned_cols=107  Identities=18%  Similarity=0.123  Sum_probs=56.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC------CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~------~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      |||.|+|+ |.||....-.+.+.. ..+.-...++      ..|-.+....+. .......+.+.+ .+      ..+|+
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~-~~~~~~~~~~~~-~~------~~~Dl   70 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGN-FTTPVVAATDAE-AL------GPADL   70 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCc-cccccccccChh-hc------CCCCE
Confidence            69999996 999999998887655 3333333221      112111111000 000111122222 22      37899


Q ss_pred             EEEcCC---hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154          110 VIDFTD---ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (257)
Q Consensus       110 vIDFT~---p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~  154 (257)
                      +|-++-   .+.+.+.+...+.....|++==-|+.-++  .+++...+
T Consensus        71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~  116 (307)
T COG1893          71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPK  116 (307)
T ss_pred             EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCc
Confidence            998874   44444555544444444554345776543  67777666

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=89.17  E-value=3.1  Score=38.64  Aligned_cols=61  Identities=15%  Similarity=0.232  Sum_probs=40.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .+|+|+| +|+||+.+++.+. .-++++.+ +++..  +...   +. .  ...-.+++++++.      .+|+|+-.
T Consensus       137 ~tvgIvG-~G~IG~~vA~~l~-afG~~V~~-~~~~~--~~~~---~~-~--~~~~~~~l~e~l~------~aDvvv~~  197 (312)
T PRK15469        137 FTIGILG-AGVLGSKVAQSLQ-TWGFPLRC-WSRSR--KSWP---GV-Q--SFAGREELSAFLS------QTRVLINL  197 (312)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCC--CCCC---Cc-e--eecccccHHHHHh------cCCEEEEC
Confidence            5899999 6999999999877 46888875 56421  1100   00 0  0111457889985      79988854

>PLN00198 anthocyanidin reductase; Provisional

Probab=89.16  E-value=1.5  Score=40.06  Aligned_cols=37  Identities=11%  Similarity=0.213  Sum_probs=29.7

Q ss_pred             CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      ..|.+ +.+|.|.|++|-.|+.+++.+.+ .+.++++..
T Consensus         4 ~~~~~-~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~   40 (338)
T PLN00198          4 LTPTG-KKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTV   40 (338)
T ss_pred             ccCCC-CCeEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence            34555 57899999999999999999885 477877654

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=89.13  E-value=3.4  Score=39.76  Aligned_cols=120  Identities=10%  Similarity=0.067  Sum_probs=60.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-C--CCcchh-hhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S--VGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~--~g~d~g-~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      |.||.|+|. |.+|..+++.+.+ -+++++.+.... .  .+.... +..-.+......-|.|.+.+++ +++..++|+|
T Consensus         2 ~k~iLi~g~-g~~a~~i~~aa~~-~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~I   78 (451)
T PRK08591          2 FDKILIANR-GEIALRIIRACKE-LGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIIS-AAEITGADAI   78 (451)
T ss_pred             cceEEEECC-CHHHHHHHHHHHH-cCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHH-HHHHhCCCEE
Confidence            679999994 9999999997764 588887754321 0  010001 1000000000112445555443 2233579988


Q ss_pred             EEcCC--hHhHHHHHHHHHHcCCCeEEeCCC--C-CHHHHHHHHHHhhhcCceE
Q 025154          111 IDFTD--ASTVYDNVKQATAFGMRSVVYVPH--I-QLETVSALSAFCDKASMGC  159 (257)
Q Consensus       111 IDFT~--p~~~~~~~~~a~~~Gi~vViGTTG--~-s~e~~~~L~~~a~~~gipv  159 (257)
                      +=...  .+. ......+.+.|++++ |.+-  + ...+...+++++++.|+|+
T Consensus        79 ~p~~~~~~e~-~~~~~~~e~~gi~~~-g~~~~~~~~~~DK~~~r~~l~~~gIp~  130 (451)
T PRK08591         79 HPGYGFLSEN-ADFAEICEDSGFTFI-GPSAETIRLMGDKVTAKATMKKAGVPV  130 (451)
T ss_pred             EECCCccccC-HHHHHHHHHCCCceE-CcCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence            74331  111 134566667787765 3220  0 0011234566666666665

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.13  E-value=2.5  Score=43.57  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=27.5

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ...-||+|+|+ |-||+.|+..++...+++++- +|.
T Consensus       307 ~~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~l-~d~  341 (708)
T PRK11154        307 RPVNKVGVLGG-GLMGGGIAYVTATKAGLPVRI-KDI  341 (708)
T ss_pred             CcccEEEEECC-chhhHHHHHHHHHHcCCeEEE-EeC
Confidence            34468999996 999999998777577888774 563

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=89.10  E-value=7.1  Score=38.87  Aligned_cols=125  Identities=8%  Similarity=0.092  Sum_probs=65.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCH--HHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl--~~~l~~~~~~~~~DVvI  111 (257)
                      .=+|.|+| +|++|+.+++.+.+ .+.+++ ++|.+.  +...++.    +.|+++ +.|.  ++++++ +.-.++|++|
T Consensus       417 ~~hiiI~G-~G~~G~~la~~L~~-~g~~vv-vId~d~--~~~~~~~----~~g~~~i~GD~~~~~~L~~-a~i~~a~~vi  486 (558)
T PRK10669        417 CNHALLVG-YGRVGSLLGEKLLA-AGIPLV-VIETSR--TRVDELR----ERGIRAVLGNAANEEIMQL-AHLDCARWLL  486 (558)
T ss_pred             CCCEEEEC-CChHHHHHHHHHHH-CCCCEE-EEECCH--HHHHHHH----HCCCeEEEcCCCCHHHHHh-cCccccCEEE
Confidence            34899999 59999999998864 466665 566431  1122221    223332 2221  223321 1113678665


Q ss_pred             EcC-ChHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154          112 DFT-DASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       112 DFT-~p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~  175 (257)
                      -.+ ..+.....+..+.+.  .+++|.=+.  ++++.+.+    ++.|+-.+++|..-++-.+.+.+
T Consensus       487 v~~~~~~~~~~iv~~~~~~~~~~~iiar~~--~~~~~~~l----~~~Gad~vv~p~~~~a~~i~~~l  547 (558)
T PRK10669        487 LTIPNGYEAGEIVASAREKRPDIEIIARAH--YDDEVAYI----TERGANQVVMGEREIARTMLELL  547 (558)
T ss_pred             EEcCChHHHHHHHHHHHHHCCCCeEEEEEC--CHHHHHHH----HHcCCCEEEChHHHHHHHHHHHh
Confidence            443 333332233333332  345554332  34555555    34678889888887776554433

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=89.06  E-value=2.1  Score=39.68  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=25.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ||.|+|+ |..|..+++.++. .++.=.-++|
T Consensus         1 kVlVVGa-GGlG~eilknLal-~Gvg~I~IvD   30 (291)
T cd01488           1 KILVIGA-GGLGCELLKNLAL-SGFRNIHVID   30 (291)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEC
Confidence            6999996 9999999999874 5777667777

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02650 dihydroflavonol-4-reductase

Probab=89.04  E-value=1.5  Score=40.50  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=27.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ..+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~r   37 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR   37 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEEc
Confidence            45899999999999999998875 5788877543

>PRK12829 short chain dehydrogenase; Provisional

Probab=88.97  E-value=3.4  Score=35.85  Aligned_cols=81  Identities=22%  Similarity=0.286  Sum_probs=47.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.+ ++..  ....++               .+...+    .+.. +..|++
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~-~g~~V~~~-~r~~--~~~~~~---------------~~~~~~----~~~~~~~~D~~   68 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAE-AGARVHVC-DVSE--AALAAT---------------AARLPG----AKVTATVADVA   68 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHH---------------HHHHhc----CceEEEEccCC
Confidence            5899999999999999999875 57786544 3321  001111               111110    0112 456888


Q ss_pred             ChHhHHHHHHHHHH--cCCCeEEeCCC
Q 025154          115 DASTVYDNVKQATA--FGMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~--~Gi~vViGTTG  139 (257)
                      .++.....+..+.+  .++..|+-..|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~d~vi~~ag   95 (264)
T PRK12829         69 DPAQVERVFDTAVERFGGLDVLVNNAG   95 (264)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            87776666655443  36777775554

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=88.96  E-value=0.9  Score=42.38  Aligned_cols=80  Identities=23%  Similarity=0.334  Sum_probs=47.9

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEcC
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDFT  114 (257)
                      .+|.||+.++|++.++.++. .|+.++ .+.+.     ...+..        +.   .|+.+.    .++.   +++|||
T Consensus        52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt-----~~KL~~--------v~---kEI~~~----~~vev~~i~~Dft  109 (312)
T KOG1014|consen   52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRT-----QEKLEA--------VA---KEIEEK----YKVEVRIIAIDFT  109 (312)
T ss_pred             EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCC-----HHHHHH--------HH---HHHHHH----hCcEEEEEEEecC
Confidence            56999999999999999985 899955 44432     111110        00   111111    2322   478999


Q ss_pred             ChHhHHHHHHHHH-HcCCCeEEeCCC
Q 025154          115 DASTVYDNVKQAT-AFGMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~-~~Gi~vViGTTG  139 (257)
                      .++..++.++..+ ..-+-++|=--|
T Consensus       110 ~~~~~ye~i~~~l~~~~VgILVNNvG  135 (312)
T KOG1014|consen  110 KGDEVYEKLLEKLAGLDVGILVNNVG  135 (312)
T ss_pred             CCchhHHHHHHHhcCCceEEEEeccc
Confidence            8888777665544 344555554444

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=88.88  E-value=2.5  Score=45.47  Aligned_cols=98  Identities=14%  Similarity=0.164  Sum_probs=56.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-----EEEEEEecC----------------CCCcchhhhh-----cCCCCCCe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSH----------------SVGEDIGMVC-----DMEQPLEI   88 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd~~----------------~~g~d~g~~~-----g~~~~~gv   88 (257)
                      ..||.|+|+ |..|..+++.++. .|+     --.-++|..                ..|+.-.+.+     .+.....+
T Consensus       419 ~~kVlvvGa-GGlG~e~lknLal-~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I  496 (1008)
T TIGR01408       419 NLNIFLVGC-GAIGCEMLKNFAL-MGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKI  496 (1008)
T ss_pred             hCcEEEECC-ChHHHHHHHHHHH-hCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEE
Confidence            368999996 9999999998874 455     233455521                1122111111     11111122


Q ss_pred             eee-cCH---------HHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEe-CCCC
Q 025154           89 PVM-SDL---------TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY-VPHI  140 (257)
Q Consensus        89 ~v~-~dl---------~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViG-TTG~  140 (257)
                      ..+ ..+         ++.+.      .+|+||+... .++-.-.-..|.++++|+|-+ |.|+
T Consensus       497 ~~~~~~v~~~~e~i~~~~f~~------~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~  554 (1008)
T TIGR01408       497 DAHQNRVGPETETIFNDEFYE------KLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGT  554 (1008)
T ss_pred             EEEEeecChhhhhhhhHHHhh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCc
Confidence            222 111         22332      6899999864 455556668999999999954 4454

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK07454 short chain dehydrogenase; Provisional

Probab=88.83  E-value=4.8  Score=34.56  Aligned_cols=86  Identities=19%  Similarity=0.268  Sum_probs=51.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (257)
                      +|.++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .+..++.               +.+.+.  ..+++ +..|
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~~~--~~~~~~~~~D   63 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAK-AGWDLAL-VARSQ--DALEALA---------------AELRST--GVKAAAYSID   63 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHHHhC--CCcEEEEEcc
Confidence            456899999999999999999875 5677655 44321  1111111               111100  01233 3568


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      .+.++.....+..+.+.  ++.+|+-..|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~   93 (241)
T PRK07454         64 LSNPEAIAPGIAELLEQFGCPDVLINNAGM   93 (241)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            88888777776666553  57788766653

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=88.82  E-value=2.9  Score=39.17  Aligned_cols=99  Identities=13%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.|.|..|+.|.+..++-.+. .....++||+....+.  +.-+-+|+  --.|..|++++++-.     ...=|+|||+
T Consensus       137 ~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~--~Fve~lg~--Yd~V~~Yd~i~~l~~-----~~~~v~VDfa  207 (314)
T PF11017_consen  137 AQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNV--AFVESLGC--YDEVLTYDDIDSLDA-----PQPVVIVDFA  207 (314)
T ss_pred             cEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcch--hhhhccCC--ceEEeehhhhhhccC-----CCCEEEEECC
Confidence            468999999999999999888 6788999999875421  11111121  123556888888754     3567999999


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCCCCHH
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPHIQLE  143 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~s~e  143 (257)
                      -...+...+..-+.-  ...+.||-|.++..
T Consensus       208 G~~~~~~~Lh~~l~d~l~~~~~VG~th~~~~  238 (314)
T PF11017_consen  208 GNGEVLAALHEHLGDNLVYSCLVGATHWDKV  238 (314)
T ss_pred             CCHHHHHHHHHHHhhhhhEEEEEEccCcccc
Confidence            665555444433322  24567899988653

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=88.81  E-value=1.7  Score=40.61  Aligned_cols=72  Identities=25%  Similarity=0.309  Sum_probs=44.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C--CCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E--QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~--~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |+|.|+|..|-+|+..+..+.+ .+.+++ ++|.-..|.. ..+... .  ...++.=..-+++++++    .++|.||.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~-~~v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHK-IALLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCH-HHhhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence            5899999999999999988875 788877 6773222211 111100 0  00011111235667765    79999999


Q ss_pred             cC
Q 025154          113 FT  114 (257)
Q Consensus       113 FT  114 (257)
                      |.
T Consensus        74 FA   75 (329)
T COG1087          74 FA   75 (329)
T ss_pred             Cc
Confidence            96

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=88.78  E-value=9.9  Score=38.68  Aligned_cols=120  Identities=15%  Similarity=0.176  Sum_probs=65.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ec---CHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVv  110 (257)
                      .-+|.|+| +||+|+.+++.+.+ .+.+++ ++|.+.  +.+..+.    +.|.++ +.   +.+ ++++ +.-.++|++
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~~-~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~-agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAG-FGRFGQIVGRLLLS-SGVKMT-VLDHDP--DHIETLR----KFGMKVFYGDATRMD-LLES-AGAAKAEVL  468 (621)
T ss_pred             cCcEEEEe-cChHHHHHHHHHHh-CCCCEE-EEECCH--HHHHHHH----hcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence            35899999 59999999998764 567665 456431  1111111    234444 22   333 3321 001367876


Q ss_pred             EEcC-ChHhHHHHHHHHHHcC--CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          111 IDFT-DASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       111 IDFT-~p~~~~~~~~~a~~~G--i~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      |-.+ .++.....+..+.+..  .++++=+  .+.++.++|+++    |+-.++-..+.-+..+
T Consensus       469 vv~~~d~~~n~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~----Gad~v~~e~~e~sl~l  526 (621)
T PRK03562        469 INAIDDPQTSLQLVELVKEHFPHLQIIARA--RDVDHYIRLRQA----GVEKPERETFEGALKS  526 (621)
T ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHC----CCCEEehhhHhHHHHH
Confidence            6555 5566666667776654  4454422  345566666553    4445655555444433

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=88.73  E-value=4.3  Score=31.04  Aligned_cols=109  Identities=21%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ec---CHHHHHhccccCCCccEEEEc
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |.|+| +|++|+.+++.+.+ .+..++. +|...  .....+.    +.++.+ +.   +.+.+...  .-.++|.+|-.
T Consensus         1 vvI~G-~g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~a--~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLERA--GIEKADAVVIL   69 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHHT--TGGCESEEEEE
T ss_pred             eEEEc-CCHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhhc--CccccCEEEEc
Confidence            67999 59999999999987 5556664 55321  1111111    122322 22   22222210  01367876666


Q ss_pred             C-ChHhHHHHHHHHHH-cC-CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          114 T-DASTVYDNVKQATA-FG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       114 T-~p~~~~~~~~~a~~-~G-i~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      | ..+.....+..+.+ ++ ++++. .. .+++..+.++    +.|+-.+++|
T Consensus        70 ~~~d~~n~~~~~~~r~~~~~~~ii~-~~-~~~~~~~~l~----~~g~d~vi~P  116 (116)
T PF02254_consen   70 TDDDEENLLIALLARELNPDIRIIA-RV-NDPENAELLR----QAGADHVISP  116 (116)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSEEEE-EE-SSHHHHHHHH----HTT-SEEEEH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCeEEE-EE-CCHHHHHHHH----HCCcCEEECc
Confidence            6 44444555566655 34 34443 22 3444444443    3556666655

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.71  E-value=2.2  Score=36.43  Aligned_cols=85  Identities=24%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+++++..+++..  ....++.               +.+..  ....+. +..|++
T Consensus         6 ~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r~~--~~~~~~~---------------~~~~~--~~~~~~~~~~D~~   65 (247)
T PRK05565          6 KVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDINE--EAAQELL---------------EEIKE--EGGDAIAVKADVS   65 (247)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH---------------HHHHh--cCCeEEEEECCCC
Confidence            4799999999999999998874 5788876545321  0111110               11110  001222 335788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      .++.+.+.+....+.  ++.+|+-..|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~   93 (247)
T PRK05565         66 SEEDVENLVEQIVEKFGKIDILVNNAGI   93 (247)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence            888776666555442  67888766553

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.69  E-value=4.3  Score=37.61  Aligned_cols=96  Identities=15%  Similarity=0.131  Sum_probs=52.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCeeeec---CHHHHHhccccCCCccEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMS---DLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~-g~~~~~gv~v~~---dl~~~l~~~~~~~~~DVvID  112 (257)
                      +|.|.|++|.+|+..++.+. ..+.++++...+..   ....+. ..+ -..+.-+.   ++.+.+.+.. +..+|+++|
T Consensus       161 ~VlV~GaaG~vG~~aiqlAk-~~G~~Vi~~~~~~~---k~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~-~~gvD~v~d  234 (348)
T PLN03154        161 SVFVSAASGAVGQLVGQLAK-LHGCYVVGSAGSSQ---KVDLLKNKLG-FDEAFNYKEEPDLDAALKRYF-PEGIDIYFD  234 (348)
T ss_pred             EEEEecCccHHHHHHHHHHH-HcCCEEEEEcCCHH---HHHHHHHhcC-CCEEEECCCcccHHHHHHHHC-CCCcEEEEE
Confidence            79999999999999998665 56888776543211   111110 010 00111121   3444332111 125899999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ++-.......+......|.=+++|..
T Consensus       235 ~vG~~~~~~~~~~l~~~G~iv~~G~~  260 (348)
T PLN03154        235 NVGGDMLDAALLNMKIHGRIAVCGMV  260 (348)
T ss_pred             CCCHHHHHHHHHHhccCCEEEEECcc
Confidence            98765444454544455655556653

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=88.66  E-value=4.1  Score=37.17  Aligned_cols=95  Identities=14%  Similarity=0.138  Sum_probs=53.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeec---CHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMS---DLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv---~v~~---dl~~~l~~~~~~~~~DV  109 (257)
                      -+|.|.|++|.+|+.+++.+. ..+.++++...+..   ....+..   .+|+   .-++   ++.+.+.+.. +..+|+
T Consensus       153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~---~~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-~~gvd~  224 (338)
T cd08295         153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDE---KVDLLKN---KLGFDDAFNYKEEPDLDAALKRYF-PNGIDI  224 (338)
T ss_pred             CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHH---HHHHHHH---hcCCceeEEcCCcccHHHHHHHhC-CCCcEE
Confidence            379999999999999998655 56888776554321   1111110   0121   1111   3333332111 136899


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ++|++-.....+.+......|.=+.+|..
T Consensus       225 v~d~~g~~~~~~~~~~l~~~G~iv~~G~~  253 (338)
T cd08295         225 YFDNVGGKMLDAVLLNMNLHGRIAACGMI  253 (338)
T ss_pred             EEECCCHHHHHHHHHHhccCcEEEEeccc
Confidence            99988665555555555566665556654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK09134 short chain dehydrogenase; Provisional

Probab=88.50  E-value=6.6  Score=34.21  Aligned_cols=34  Identities=26%  Similarity=0.514  Sum_probs=27.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .+.++.|.|++|.+|+.+++.+.+ .+..++....
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~-~g~~v~~~~~   41 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAA-HGFDVAVHYN   41 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            346899999999999999998874 6778776554

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=88.48  E-value=0.68  Score=40.37  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=28.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ++|.|.|+||..|+.+++.+.+. +.+++++...
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~   33 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN   33 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence            58999999999999999999866 8888887764

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=88.38  E-value=2.8  Score=38.51  Aligned_cols=30  Identities=13%  Similarity=0.238  Sum_probs=24.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcC-CcEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAG   65 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg   65 (257)
                      ++|.|.|++|.+|+.+++.+.+.. ..+++.
T Consensus         5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~   35 (324)
T TIGR03589         5 KSILITGGTGSFGKAFISRLLENYNPKKIII   35 (324)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEE
Confidence            589999999999999999988653 356654

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=88.32  E-value=6.4  Score=33.40  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=26.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus         6 ~~vlItG~sg~iG~~l~~~l~~-~G~~v~~~~~   37 (248)
T PRK05557          6 KVALVTGASRGIGRAIAERLAA-QGANVVINYA   37 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeC
Confidence            5799999999999999999875 4788755543

>PRK07326 short chain dehydrogenase; Provisional

Probab=88.30  E-value=3.3  Score=35.35  Aligned_cols=30  Identities=33%  Similarity=0.345  Sum_probs=25.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.+
T Consensus         7 ~~ilItGatg~iG~~la~~l~~-~g~~V~~~   36 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLA-EGYKVAIT   36 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHH-CCCEEEEe
Confidence            4799999999999999999875 58886654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=88.29  E-value=2.1  Score=38.22  Aligned_cols=93  Identities=17%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeee---ecCHHHHHhccccCCCccEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~~~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      +|.|+|+ |-+|...++.+. ..+.+ ++. ++...  .. -+++   .++|...   +.+..+.+.++..+..+|++||
T Consensus       123 ~VlV~G~-G~vG~~~~~~ak-~~G~~~Vi~-~~~~~--~r-~~~a---~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid  193 (280)
T TIGR03366       123 RVLVVGA-GMLGLTAAAAAA-AAGAARVVA-ADPSP--DR-RELA---LSFGATALAEPEVLAERQGGLQNGRGVDVALE  193 (280)
T ss_pred             EEEEECC-CHHHHHHHHHHH-HcCCCEEEE-ECCCH--HH-HHHH---HHcCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence            7999996 999999998665 45776 544 45321  00 1111   1122211   1222222111111135899999


Q ss_pred             cCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154          113 FTD-ASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       113 FT~-p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ++- +......+......|.=+++|..
T Consensus       194 ~~G~~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       194 FSGATAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CCCChHHHHHHHHHhcCCCEEEEeccC
Confidence            884 44444444444455665667753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=88.26  E-value=1.2  Score=38.11  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=24.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc-CCcEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAG   65 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg   65 (257)
                      |+|.|+|++|.+|+.+++.+.+. .+..++.
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~   31 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA   31 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence            48999999999999999998865 3555543

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.26  E-value=1.5  Score=42.39  Aligned_cols=59  Identities=20%  Similarity=0.106  Sum_probs=40.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .+|||+| +|++|+.+++.+. .=++++.+ +|+.. ...         ..++....++++++.      .+|+|+-.
T Consensus       152 ktvGIiG-~G~IG~~vA~~~~-~fGm~V~~-~d~~~-~~~---------~~~~~~~~~l~ell~------~sDiVslh  210 (409)
T PRK11790        152 KTLGIVG-YGHIGTQLSVLAE-SLGMRVYF-YDIED-KLP---------LGNARQVGSLEELLA------QSDVVSLH  210 (409)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCCc-ccc---------cCCceecCCHHHHHh------hCCEEEEc
Confidence            5899999 6999999999876 46888875 55421 000         112333458999985      68987754

>cd08230 glucose_DH Glucose dehydrogenase

Probab=88.24  E-value=2.3  Score=39.26  Aligned_cols=94  Identities=18%  Similarity=0.192  Sum_probs=51.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ec--CHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MS--DLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~--dl~~~l~~~~~~~~~DVvI  111 (257)
                      -+|+|.|+ |.+|...++.+. ..+.+++++. +.....+-.+++   .++|+..  +.  ++.+...    ...+|++|
T Consensus       174 ~~vlI~G~-G~vG~~a~q~ak-~~G~~vi~~~-~~~~~~~~~~~~---~~~Ga~~v~~~~~~~~~~~~----~~~~d~vi  243 (355)
T cd08230         174 RRALVLGA-GPIGLLAALLLR-LRGFEVYVLN-RRDPPDPKADIV---EELGATYVNSSKTPVAEVKL----VGEFDLII  243 (355)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCeEEEEe-cCCCCHHHHHHH---HHcCCEEecCCccchhhhhh----cCCCCEEE
Confidence            37999996 999999998665 4577766543 210000111111   1223222  11  2222111    13689999


Q ss_pred             EcCC-hHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          112 DFTD-ASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       112 DFT~-p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      |++- +......+......|.=+.+|++.
T Consensus       244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~~  272 (355)
T cd08230         244 EATGVPPLAFEALPALAPNGVVILFGVPG  272 (355)
T ss_pred             ECcCCHHHHHHHHHHccCCcEEEEEecCC
Confidence            9986 444555555555667666678753

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08293 PTGR2 Prostaglandin reductase

Probab=88.23  E-value=1.5  Score=39.92  Aligned_cols=98  Identities=12%  Similarity=0.022  Sum_probs=52.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvID  112 (257)
                      -+|.|.|++|.+|+..++.+. ..+. ++++...+......+.+-.|.   ..+..+  .++.+.+.++. +..+|+++|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~~-~~gvd~vid  230 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDEKCQLLKSELGF---DAAINYKTDNVAERLRELC-PEGVDVYFD  230 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHhcCC---cEEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence            379999999999999998655 5677 677665432100001100111   011111  23333322111 136899999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ++........+......|.=+.+|..
T Consensus       231 ~~g~~~~~~~~~~l~~~G~iv~~G~~  256 (345)
T cd08293         231 NVGGEISDTVISQMNENSHIILCGQI  256 (345)
T ss_pred             CCCcHHHHHHHHHhccCCEEEEEeee
Confidence            87655544444444455655556643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK07023 short chain dehydrogenase; Provisional

Probab=88.19  E-value=0.75  Score=39.78  Aligned_cols=31  Identities=23%  Similarity=0.498  Sum_probs=26.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      ||+|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~   31 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGV   31 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHh-CCCEEEEE
Confidence            67999999999999999999875 58887764

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.16  E-value=3.2  Score=42.92  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=25.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ..-||+|+|+ |-||+.|+..++ ..+++++ .+|
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d  343 (715)
T PRK11730        312 PVKQAAVLGA-GIMGGGIAYQSA-SKGVPVI-MKD  343 (715)
T ss_pred             ccceEEEECC-chhHHHHHHHHH-hCCCeEE-EEe
Confidence            3458999996 999999998766 5588776 455

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=88.14  E-value=1.7  Score=40.63  Aligned_cols=32  Identities=25%  Similarity=0.250  Sum_probs=23.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      +||+|+|+ |++|+.++-.+....=. || ..+|.
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el-~LiDi   33 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSEL-VLIDI   33 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceE-EEEEc
Confidence            58999998 99999999888544333 44 36674

>PRK06196 oxidoreductase; Provisional

Probab=87.84  E-value=4.2  Score=36.93  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=25.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus        27 k~vlITGasggIG~~~a~~L~~-~G~~Vv~~   56 (315)
T PRK06196         27 KTAIVTGGYSGLGLETTRALAQ-AGAHVIVP   56 (315)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE
Confidence            5799999999999999998875 57887764

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=87.80  E-value=1.9  Score=41.31  Aligned_cols=129  Identities=16%  Similarity=0.199  Sum_probs=77.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc---CCcEEEEEEecCCCCcchhhhh---cCC----CCCC-eeeec-----CHHHHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVGEDIGMVC---DME----QPLE-IPVMS-----DLTMVL   98 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~g~d~g~~~---g~~----~~~g-v~v~~-----dl~~~l   98 (257)
                      ..-+.|.||+|-.|+.+++.+...   ++..+.  +.-+. .+.+.+++   +..    -+.. +.+.|     +++++.
T Consensus         5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla--vAGRn-~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema   81 (423)
T KOG2733|consen    5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA--VAGRN-EKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMA   81 (423)
T ss_pred             eeeEEEEccccccceeeHHHHhhhhcccCceEE--EecCC-HHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHH
Confidence            456899999999999999988753   344332  22110 00111111   100    0111 22333     255555


Q ss_pred             hccccCCCccEEEEcCChHhH--HHHHHHHHHcCCCeE--EeCCCCCHHHHHHHHHHhhhcCceEEEccCc-----hHHH
Q 025154           99 GSISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTL-----SIGS  169 (257)
Q Consensus        99 ~~~~~~~~~DVvIDFT~p~~~--~~~~~~a~~~Gi~vV--iGTTG~s~e~~~~L~~~a~~~gipvl~spNf-----SlGv  169 (257)
                            ..+-|+|..--|--.  ...++.|+++|.+-|  .|-+-|-+--..+-.+.|+++|+-|+=|..|     -+||
T Consensus        82 ------k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDlGv  155 (423)
T KOG2733|consen   82 ------KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADLGV  155 (423)
T ss_pred             ------hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCCCCcccee
Confidence                  367899988766555  578899999999876  4444443333345677899999988866664     5777


Q ss_pred             HHH
Q 025154          170 ILL  172 (257)
Q Consensus       170 nll  172 (257)
                      +.+
T Consensus       156 ~f~  158 (423)
T KOG2733|consen  156 MFL  158 (423)
T ss_pred             eee
Confidence            554

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=87.79  E-value=5  Score=38.84  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=24.8

Q ss_pred             CceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~   69 (257)
                      +.||.|+|. |+.|.. +++.+. ..+.++. +.|.
T Consensus         7 ~~~v~viG~-G~sG~s~~a~~L~-~~G~~V~-~~D~   39 (461)
T PRK00421          7 IKRIHFVGI-GGIGMSGLAEVLL-NLGYKVS-GSDL   39 (461)
T ss_pred             CCEEEEEEE-chhhHHHHHHHHH-hCCCeEE-EECC
Confidence            468999995 999999 687665 5688865 4664

>PRK08017 oxidoreductase; Provisional

Probab=87.79  E-value=12  Score=32.34  Aligned_cols=29  Identities=34%  Similarity=0.588  Sum_probs=24.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      +|.|+|++|.+|+.+++.+.+ .+.+++.+
T Consensus         4 ~vlVtGasg~IG~~la~~l~~-~g~~v~~~   32 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKR-RGYRVLAA   32 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHH-CCCEEEEE
Confidence            699999999999999999875 47777654

>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5

Probab=87.78  E-value=0.61  Score=43.24  Aligned_cols=41  Identities=15%  Similarity=0.026  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       119 ~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      +.-++.+|++.|++.|-+|+-+... ...+.++++++|+|++
T Consensus       189 S~~YA~AAl~~g~~fvN~tP~~~a~-~P~l~ela~~~gvpi~  229 (295)
T PF07994_consen  189 SMLYAYAALEAGVPFVNGTPSNIAD-DPALVELAEEKGVPIA  229 (295)
T ss_dssp             HHHHHHHHHHTTEEEEE-SSSTTTT-SHHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHCCCCeEeccCccccC-CHHHHHHHHHcCCCee
Confidence            4567788899999999999976542 3578899999999987

5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=87.72  E-value=2.2  Score=34.36  Aligned_cols=97  Identities=15%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--------------ecCHHHHHhcccc
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--------------MSDLTMVLGSISQ  103 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--------------~~dl~~~l~~~~~  103 (257)
                      |+|+|+ |.||..++..+.+ .+.++.-+..+.    ....+.    ..|+.+              ..+..+..     
T Consensus         1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r~~----~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----   65 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSRSP----RLEAIK----EQGLTITGPDGDETVQPPIVISAPSADA-----   65 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHH-TTCEEEEEESHH----HHHHHH----HHCEEEEETTEEEEEEEEEEESSHGHHH-----
T ss_pred             CEEECc-CHHHHHHHHHHHH-CCCceEEEEccc----cHHhhh----heeEEEEecccceecccccccCcchhcc-----
Confidence            789996 9999999998876 788866544322    011110    111111              11221122     


Q ss_pred             CCCccEEEEcCChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHh
Q 025154          104 SKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFC  152 (257)
Q Consensus       104 ~~~~DVvIDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a  152 (257)
                       .++|+||-++-.....+.+.....   ...++|+--.|+..+  +.+++.-
T Consensus        66 -~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~--~~l~~~~  114 (151)
T PF02558_consen   66 -GPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNE--EVLAEYF  114 (151)
T ss_dssp             -STESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHH--HHHHCHS
T ss_pred             -CCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcH--HHHHHHc
Confidence             478988888765555555544433   333466666788754  3455444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=87.65  E-value=3.1  Score=44.76  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=27.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -+|.|+|+ |..|..+++.+. ..|+.=+.++|.
T Consensus        25 s~VLIiG~-gGLG~EiaKnL~-laGVg~iti~D~   56 (1008)
T TIGR01408        25 SNVLISGM-GGLGLEIAKNLV-LAGVKSVTLHDT   56 (1008)
T ss_pred             CcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeC
Confidence            48999996 999999999987 567877778884

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=87.60  E-value=1.7  Score=40.27  Aligned_cols=60  Identities=20%  Similarity=0.180  Sum_probs=41.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|||+| +|++|+.+++.+. .=++++.+ +|+.  +...        ..++. +.++++++.      .+|+|+-..
T Consensus       145 gktvGIiG-~G~IG~~vA~~~~-~fgm~V~~-~d~~--~~~~--------~~~~~-~~~l~ell~------~sDvv~lh~  204 (311)
T PRK08410        145 GKKWGIIG-LGTIGKRVAKIAQ-AFGAKVVY-YSTS--GKNK--------NEEYE-RVSLEELLK------TSDIISIHA  204 (311)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHh-hcCCEEEE-ECCC--cccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence            36899999 6999999999875 45888775 5653  1110        11222 458999995      799887543

>PRK06523 short chain dehydrogenase; Provisional

Probab=87.54  E-value=9.7  Score=33.03  Aligned_cols=30  Identities=27%  Similarity=0.468  Sum_probs=25.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus        10 k~vlItGas~gIG~~ia~~l~~-~G~~v~~~   39 (260)
T PRK06523         10 KRALVTGGTKGIGAATVARLLE-AGARVVTT   39 (260)
T ss_pred             CEEEEECCCCchhHHHHHHHHH-CCCEEEEE
Confidence            5799999999999999999875 57887654

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

Probab=87.53  E-value=6.6  Score=38.22  Aligned_cols=121  Identities=13%  Similarity=0.117  Sum_probs=71.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||.|+| +|.=-.+|+..+.+++...-+ .+.+.+.|......     -.++.+.+|.+.+.+ .|+..++|.+|-=.-
T Consensus         1 mkVLviG-sGgREHAiA~~la~s~~v~~~-~~apgN~G~a~~~~-----~~~~~~~~~~~~lv~-fA~~~~idl~vVGPE   72 (428)
T COG0151           1 MKVLVIG-SGGREHALAWKLAQSPLVLYV-YVAPGNPGTALEAY-----LVNIEIDTDHEALVA-FAKEKNVDLVVVGPE   72 (428)
T ss_pred             CeEEEEc-CCchHHHHHHHHhcCCceeEE-EEeCCCCccchhhh-----hccCccccCHHHHHH-HHHHcCCCEEEECCc
Confidence            7999999 688888888888876654333 23343334322111     112222145555542 334467887665554


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCCHHHH----HHHHHHhhhcCceEEEccCch
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~----~~L~~~a~~~gipvl~spNfS  166 (257)
                      ..-..-.+....+.|++++ |-|-- ..|+    ...+++.+++|||-.---+|+
T Consensus        73 ~pL~~GvvD~l~~~Gi~vF-GPsk~-AA~lE~SK~faK~fm~k~~IPta~y~~f~  125 (428)
T COG0151          73 APLVAGVVDALRAAGIPVF-GPTKA-AAQLEGSKAFAKDFMKKYGIPTAEYEVFT  125 (428)
T ss_pred             HHHhhhhHHHHHHCCCcee-CcCHH-HHHHHhhHHHHHHHHHHcCCCcccccccC
Confidence            5555667788889999976 66621 1122    235666778888866666666

>TIGR00518 alaDH alanine dehydrogenase

Probab=87.39  E-value=2.1  Score=40.74  Aligned_cols=42  Identities=19%  Similarity=0.164  Sum_probs=30.4

Q ss_pred             ccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        25 ~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ...+..|.-.+-||+|+|+ |++|+..++.+.. -+.+ |-++|+
T Consensus       157 ~~~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~-lGa~-V~v~d~  198 (370)
T TIGR00518       157 VLLGGVPGVEPGDVTIIGG-GVVGTNAAKMANG-LGAT-VTILDI  198 (370)
T ss_pred             eeecCCCCCCCceEEEEcC-CHHHHHHHHHHHH-CCCe-EEEEEC
Confidence            3445555555678999995 9999999998764 4676 455775

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06487 glycerate dehydrogenase; Provisional

Probab=87.30  E-value=1.7  Score=40.47  Aligned_cols=57  Identities=19%  Similarity=0.045  Sum_probs=39.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .+|+|+| +|++|+.+++.+. .=++++.+ +++.  +.+.          .. -+.++++++.      .+|+|+-..
T Consensus       149 ktvgIiG-~G~IG~~vA~~l~-~fgm~V~~-~~~~--~~~~----------~~-~~~~l~ell~------~sDiv~l~l  205 (317)
T PRK06487        149 KTLGLLG-HGELGGAVARLAE-AFGMRVLI-GQLP--GRPA----------RP-DRLPLDELLP------QVDALTLHC  205 (317)
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCC--CCcc----------cc-cccCHHHHHH------hCCEEEECC
Confidence            5899999 6999999999876 45888875 4543  1110          01 1347999996      799888554

>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=87.27  E-value=5.7  Score=38.23  Aligned_cols=96  Identities=11%  Similarity=0.075  Sum_probs=54.9

Q ss_pred             EEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCC---cchhhh----------------hcCCCCCCeeeecCHHHHHh
Q 025154           40 INGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---EDIGMV----------------CDMEQPLEIPVMSDLTMVLG   99 (257)
Q Consensus        40 V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g---~d~g~~----------------~g~~~~~gv~v~~dl~~~l~   99 (257)
                      |.|+||-+|+..++.+...+ ++++++........   +.+.++                ...-...++.++...+.+. 
T Consensus         1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~-   79 (383)
T PRK12464          1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLI-   79 (383)
T ss_pred             CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHH-
Confidence            57999999999999888764 49999987632100   000000                0000000123332222221 


Q ss_pred             ccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      ++++...+|+|+-...-.+...-...|++.|+.+-..
T Consensus        80 ~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA  116 (383)
T PRK12464         80 AVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALA  116 (383)
T ss_pred             HHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe
Confidence            1122246898887766666677777788999887764

>PRK12939 short chain dehydrogenase; Provisional

Probab=87.22  E-value=9.8  Score=32.53  Aligned_cols=84  Identities=20%  Similarity=0.289  Sum_probs=50.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.. ++..  ....++.              +++...   ..+++ +..|++
T Consensus         8 ~~vlItGa~g~iG~~la~~l~~-~G~~v~~~-~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dl~   66 (250)
T PRK12939          8 KRALVTGAARGLGAAFAEALAE-AGATVAFN-DGLA--AEARELA--------------AALEAA---GGRAHAIAADLA   66 (250)
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-cCCEEEEE-eCCH--HHHHHHH--------------HHHHhc---CCcEEEEEccCC
Confidence            5799999999999999998874 57887665 4321  1111110              111100   01233 345888


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      .++.....+..+.+.  ++.+|+-..|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~   94 (250)
T PRK12939         67 DPASVQRFFDAAAAALGGLDGLVNNAGI   94 (250)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            888777766665543  57777766653

>PRK06841 short chain dehydrogenase; Provisional

Probab=87.12  E-value=4.5  Score=34.96  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus        16 k~vlItGas~~IG~~la~~l~~-~G~~Vi~~   45 (255)
T PRK06841         16 KVAVVTGGASGIGHAIAELFAA-KGARVALL   45 (255)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEE
Confidence            4799999999999999999875 57887653

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=87.08  E-value=2.4  Score=39.09  Aligned_cols=89  Identities=9%  Similarity=0.060  Sum_probs=48.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      +|+|.|+ |.+|...++.+.. ....++++ ++....-.+   ++.   ..+...  ..++..+.    ..+|++||++-
T Consensus       166 ~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~-~~~~~~k~~---~a~---~~~~~~--~~~~~~~~----~g~d~viD~~G  231 (341)
T cd08237         166 VIGVWGD-GNLGYITALLLKQIYPESKLVV-FGKHQEKLD---LFS---FADETY--LIDDIPED----LAVDHAFECVG  231 (341)
T ss_pred             EEEEECC-CHHHHHHHHHHHHhcCCCcEEE-EeCcHhHHH---HHh---hcCcee--ehhhhhhc----cCCcEEEECCC
Confidence            7999996 9999999887764 33455554 443210111   110   111111  11222221    25899999985


Q ss_pred             ----hHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          116 ----ASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       116 ----p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                          +......++.....|.=+++|.++
T Consensus       232 ~~~~~~~~~~~~~~l~~~G~iv~~G~~~  259 (341)
T cd08237         232 GRGSQSAINQIIDYIRPQGTIGLMGVSE  259 (341)
T ss_pred             CCccHHHHHHHHHhCcCCcEEEEEeecC
Confidence                344455555555566666678653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=87.02  E-value=7.1  Score=32.55  Aligned_cols=82  Identities=17%  Similarity=0.084  Sum_probs=46.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -||.|+|+ |++|...++.+.+ .+.+++ ++++. ..++..++.      .+. ....+++.--     ..+|+||-.|
T Consensus        14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~-~~~~l~~l~------~i~~~~~~~~~~dl-----~~a~lViaaT   78 (157)
T PRK06719         14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPE-ICKEMKELP------YITWKQKTFSNDDI-----KDAHLIYAAT   78 (157)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCc-cCHHHHhcc------CcEEEecccChhcC-----CCceEEEECC
Confidence            58999996 9999999988764 566666 44443 222222211      111 1222222211     3688888888


Q ss_pred             ChHhHHHHHHHHHHcCCC
Q 025154          115 DASTVYDNVKQATAFGMR  132 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~  132 (257)
                      .-+.....+..+.+.+.+
T Consensus        79 ~d~e~N~~i~~~a~~~~~   96 (157)
T PRK06719         79 NQHAVNMMVKQAAHDFQW   96 (157)
T ss_pred             CCHHHHHHHHHHHHHCCc
Confidence            666665555444444543

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.91  E-value=2.4  Score=40.57  Aligned_cols=136  Identities=14%  Similarity=0.106  Sum_probs=69.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      -||.|+|. |++|..+++.+. ..+.+++ ++|.............   .   ....+.+....      ++|++|-...
T Consensus         4 ~~i~iiGl-G~~G~slA~~l~-~~G~~V~-g~D~~~~~~~~~~~~~---~---~~~~~~~~~~~------~~dlvV~s~g   68 (418)
T PRK00683          4 QRVVVLGL-GVTGKSIARFLA-QKGVYVI-GVDKSLEALQSCPYIH---E---RYLENAEEFPE------QVDLVVRSPG   68 (418)
T ss_pred             CeEEEEEE-CHHHHHHHHHHH-HCCCEEE-EEeCCccccchhHHHh---h---hhcCCcHHHhc------CCCEEEECCC
Confidence            48999995 999999998776 4567755 4664311100000000   0   00112222332      5777764443


Q ss_pred             hHhHHHHHHHHHHcCCCeE-----------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154          116 ASTVYDNVKQATAFGMRSV-----------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vV-----------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a  176 (257)
                      .....+.+..|+++|+++|                 ||-||-+-  -..+.|..+-++.|.+.....|  +|+.++... 
T Consensus        69 i~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gn--iG~p~l~~~-  145 (418)
T PRK00683         69 IKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGN--IGIPILDGM-  145 (418)
T ss_pred             CCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECC--cCHHHHHHh-
Confidence            2333555555655555543                 23333210  1123455555556667777788  776654322 


Q ss_pred             HHhcCCCCCeEEEeccCC
Q 025154          177 ISASFHYKNVEIVESRPN  194 (257)
Q Consensus       177 ~~l~~~~~DiEIiE~HH~  194 (257)
                         .  ..|+-++|.=-.
T Consensus       146 ---~--~~~~~V~E~~s~  158 (418)
T PRK00683        146 ---Q--QPGVRVVEISSF  158 (418)
T ss_pred             ---h--cCCEEEEEechh
Confidence               2  246778885333

>PRK12767 carbamoyl phosphate synthase-like protein; Provisional

Probab=86.77  E-value=7.7  Score=35.27  Aligned_cols=30  Identities=23%  Similarity=0.232  Sum_probs=22.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~   66 (257)
                      |+||.|.|+ |.+- .+++.+.+.. +++++++
T Consensus         1 ~~~vLv~g~-~~~~-~~~~~l~~~~~g~~vi~~   31 (326)
T PRK12767          1 MMNILVTSA-GRRV-QLVKALKKSLLKGRVIGA   31 (326)
T ss_pred             CceEEEecC-CccH-HHHHHHHHhccCCEEEEE
Confidence            799999997 5444 7788887665 6888864

>PRK06932 glycerate dehydrogenase; Provisional

Probab=86.77  E-value=1.7  Score=40.34  Aligned_cols=58  Identities=16%  Similarity=0.059  Sum_probs=40.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .+|+|+| +|++|+.+++.+. .=++++.+ +++.. ..+          ... -+.++++++.      .+|+|+-..
T Consensus       148 ktvgIiG-~G~IG~~va~~l~-~fg~~V~~-~~~~~-~~~----------~~~-~~~~l~ell~------~sDiv~l~~  205 (314)
T PRK06932        148 STLGVFG-KGCLGTEVGRLAQ-ALGMKVLY-AEHKG-ASV----------CRE-GYTPFEEVLK------QADIVTLHC  205 (314)
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCc-ccc----------ccc-ccCCHHHHHH------hCCEEEEcC
Confidence            5899999 6999999999775 56888875 45421 000          011 1468999996      799888554

>PLN02306 hydroxypyruvate reductase

Probab=86.73  E-value=2.1  Score=41.03  Aligned_cols=70  Identities=20%  Similarity=0.154  Sum_probs=41.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh---hhcC------CCCCCeeeecCHHHHHhccccCCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VCDM------EQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~---~~g~------~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      .+|+|+| +|++|+.+++.+...=++++. ++|+... .+...   ..+.      ..+.++..+.++++++.      .
T Consensus       166 ktvGIiG-~G~IG~~vA~~l~~~fGm~V~-~~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------~  236 (386)
T PLN02306        166 QTVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------E  236 (386)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCEEE-EECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------h
Confidence            5899999 699999999987534588876 4564310 00000   0000      00011222468999996      7


Q ss_pred             ccEEEEcC
Q 025154          107 RAVVIDFT  114 (257)
Q Consensus       107 ~DVvIDFT  114 (257)
                      +|+|+-..
T Consensus       237 sDiV~lh~  244 (386)
T PLN02306        237 ADVISLHP  244 (386)
T ss_pred             CCEEEEeC
Confidence            99877543

>PRK09186 flagellin modification protein A; Provisional

Probab=86.49  E-value=4.8  Score=34.76  Aligned_cols=30  Identities=37%  Similarity=0.377  Sum_probs=25.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus         5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~   34 (256)
T PRK09186          5 KTILITGAGGLIGSALVKAILE-AGGIVIAA   34 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEE
Confidence            4799999999999999998875 57887665

>PLN02253 xanthoxin dehydrogenase

Probab=86.48  E-value=5.5  Score=35.15  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=25.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .++.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus        19 k~~lItGas~gIG~~la~~l~~-~G~~v~~~   48 (280)
T PLN02253         19 KVALVTGGATGIGESIVRLFHK-HGAKVCIV   48 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-cCCEEEEE
Confidence            5799999999999999998875 57887653

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=86.36  E-value=1.8  Score=40.03  Aligned_cols=70  Identities=19%  Similarity=0.360  Sum_probs=45.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--CC--c-----chhhhhcCCCCCCeeeec--CH-----HHHHh
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG--E-----DIGMVCDMEQPLEIPVMS--DL-----TMVLG   99 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g--~-----d~g~~~g~~~~~gv~v~~--dl-----~~~l~   99 (257)
                      |||++.| ++.++..+.+.+.+. ++++++++..+.  .+  .     ++.+++   .+.+++++.  ++     .+.+.
T Consensus         1 mkIvf~G-~~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a---~~~~Ip~~~~~~~~~~~~~~~l~   75 (309)
T PRK00005          1 MRIVFMG-TPEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLA---LEHGIPVLQPEKLRDPEFLAELA   75 (309)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHH---HHcCCCEECcCCCCCHHHHHHHH
Confidence            6999999 799999999998764 899999996321  11  1     233444   245777743  21     22233


Q ss_pred             ccccCCCccEEEEcC
Q 025154          100 SISQSKARAVVIDFT  114 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT  114 (257)
                      +    .++|++|-++
T Consensus        76 ~----~~~Dliv~~~   86 (309)
T PRK00005         76 A----LNADVIVVVA   86 (309)
T ss_pred             h----cCcCEEEEeh
Confidence            2    5899877654

>PRK06139 short chain dehydrogenase; Provisional

Probab=86.31  E-value=6.6  Score=36.44  Aligned_cols=81  Identities=27%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (257)
                      ..|.|+|++|.+|+.+++.+.+ .+.+|+. +++..  ....++.              +++-+     ...+   +..|
T Consensus         8 k~vlITGAs~GIG~aia~~la~-~G~~Vvl-~~R~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~D   64 (330)
T PRK06139          8 AVVVITGASSGIGQATAEAFAR-RGARLVL-AARDE--EALQAVA--------------EECRA-----LGAEVLVVPTD   64 (330)
T ss_pred             CEEEEcCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence            3699999999999999998875 5788764 34321  1111111              11111     1222   3468


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .+.++.....+..+.+.  ++.+++-..|
T Consensus        65 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG   93 (330)
T PRK06139         65 VTDADQVKALATQAASFGGRIDVWVNNVG   93 (330)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            88888887777666554  5777776665

>PRK07985 oxidoreductase; Provisional

Probab=86.29  E-value=12  Score=33.79  Aligned_cols=85  Identities=24%  Similarity=0.266  Sum_probs=49.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++........+               +.+.+.+.  +.... +..|++
T Consensus        50 k~vlITGas~gIG~aia~~L~~-~G~~Vi~-~~~~~~~~~~~~---------------~~~~~~~~--~~~~~~~~~Dl~  110 (294)
T PRK07985         50 RKALVTGGDSGIGRAAAIAYAR-EGADVAI-SYLPVEEEDAQD---------------VKKIIEEC--GRKAVLLPGDLS  110 (294)
T ss_pred             CEEEEECCCCcHHHHHHHHHHH-CCCEEEE-ecCCcchhhHHH---------------HHHHHHHc--CCeEEEEEccCC
Confidence            4799999999999999999875 5888764 332110011111               11122110  00121 456888


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++.....+..+.+.  ++.+++-..|
T Consensus       111 ~~~~~~~~~~~~~~~~g~id~lv~~Ag  137 (294)
T PRK07985        111 DEKFARSLVHEAHKALGGLDIMALVAG  137 (294)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            888887777766542  4667665544

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=86.11  E-value=6.9  Score=34.16  Aligned_cols=97  Identities=11%  Similarity=0.178  Sum_probs=52.3

Q ss_pred             HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCH---HHHHhccccCCCcc-EEEEcC---ChHhHH--
Q 025154           50 AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL---TMVLGSISQSKARA-VVIDFT---DASTVY--  120 (257)
Q Consensus        50 ~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl---~~~l~~~~~~~~~D-VvIDFT---~p~~~~--  120 (257)
                      .-++.+.+.-++-++|++-....            ..++.++..+   +++.+     ..+| |.+|.|   +|....  
T Consensus        22 ~dI~aik~~v~lPIIGi~K~~y~------------~~~V~ITPT~~ev~~l~~-----aGadIIAlDaT~R~Rp~~l~~l   84 (192)
T PF04131_consen   22 EDIRAIKKAVDLPIIGIIKRDYP------------DSDVYITPTLKEVDALAE-----AGADIIALDATDRPRPETLEEL   84 (192)
T ss_dssp             HHHHHHHTTB-S-EEEE-B-SBT------------TSS--BS-SHHHHHHHHH-----CT-SEEEEE-SSSS-SS-HHHH
T ss_pred             HHHHHHHHhcCCCEEEEEeccCC------------CCCeEECCCHHHHHHHHH-----cCCCEEEEecCCCCCCcCHHHH
Confidence            55667777788888988854221            2345555444   44555     4788 679998   354433  


Q ss_pred             ------------------HHHHHHHHcCCCeEEeCC--CCC------HHHHHHHHHHhhhcCceEEEccCc
Q 025154          121 ------------------DNVKQATAFGMRSVVYVP--HIQ------LETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       121 ------------------~~~~~a~~~Gi~vViGTT--G~s------~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                                        +....|.+.|..+| |||  |++      ..+++.++++++. ++|++-=.++
T Consensus        85 i~~i~~~~~l~MADist~ee~~~A~~~G~D~I-~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri  153 (192)
T PF04131_consen   85 IREIKEKYQLVMADISTLEEAINAAELGFDII-GTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRI  153 (192)
T ss_dssp             HHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEE-E-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS-
T ss_pred             HHHHHHhCcEEeeecCCHHHHHHHHHcCCCEE-EcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCC
Confidence                              34456677787765 676  553      2457788888876 7887644444

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=86.10  E-value=9.6  Score=34.98  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=49.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--e-e--cCHHHHHhccccCCCccEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--V-M--SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v-~--~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +|.|.|+ |.+|...++.+. ..+.+-+-+++...   +--+++   .++|..  + +  .++++....   ...+|++|
T Consensus       172 ~VlV~G~-G~vG~~aiqlak-~~G~~~Vi~~~~~~---~~~~~a---~~lGa~~vi~~~~~~~~~~~~~---~g~~D~vi  240 (343)
T PRK09880        172 RVFVSGV-GPIGCLIVAAVK-TLGAAEIVCADVSP---RSLSLA---REMGADKLVNPQNDDLDHYKAE---KGYFDVSF  240 (343)
T ss_pred             EEEEECC-CHHHHHHHHHHH-HcCCcEEEEEeCCH---HHHHHH---HHcCCcEEecCCcccHHHHhcc---CCCCCEEE
Confidence            7999996 999999998665 45664333344321   001111   122321  1 1  134443321   12489999


Q ss_pred             EcCCh-HhHHHHHHHHHHcCCCeEEeCC
Q 025154          112 DFTDA-STVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       112 DFT~p-~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      |++-. +.....+......|.=+.+|.+
T Consensus       241 d~~G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        241 EVSGHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             ECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            99864 4444555555556665557764

>PRK12742 oxidoreductase; Provisional

Probab=86.08  E-value=5.5  Score=33.95  Aligned_cols=30  Identities=30%  Similarity=0.360  Sum_probs=25.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus         7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~   36 (237)
T PRK12742          7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFT   36 (237)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEe
Confidence            4799999999999999998875 57777644

>PRK06199 ornithine cyclodeaminase; Validated

Probab=86.04  E-value=2.1  Score=40.88  Aligned_cols=96  Identities=14%  Similarity=0.175  Sum_probs=59.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhc-CCCCC----CeeeecCHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~~~g-~~~~~----gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      -+++|+| +|.+++.+++++.. .+.++=+-++++..  ..+..++. +...+    .+.+.+|.++++.      ++||
T Consensus       156 ~~l~iiG-~G~QA~~~l~a~~~v~~~i~~V~v~~r~~--~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~------~ADI  226 (379)
T PRK06199        156 KVVGLLG-PGVMGKTILAAFMAVCPGIDTIKIKGRGQ--KSLDSFATWVAETYPQITNVEVVDSIEEVVR------GSDI  226 (379)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCCceEEEeCCHHHHHc------CCCE
Confidence            4899999 59999999998876 45688888888541  11111110 00111    3667899999985      7999


Q ss_pred             EEEcCChHh----HHHHH-HHHHHcCCCeE-EeCCCC
Q 025154          110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYVPHI  140 (257)
Q Consensus       110 vIDFT~p~~----~~~~~-~~a~~~Gi~vV-iGTTG~  140 (257)
                      |+-.|.-..    ....+ ...++-|.+|. +|...+
T Consensus       227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~el  263 (379)
T PRK06199        227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRI  263 (379)
T ss_pred             EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCcccC
Confidence            886664111    11222 23457888876 444333

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=86.00  E-value=2.5  Score=37.74  Aligned_cols=95  Identities=15%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--ee-ec--CHHHHHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PV-MS--DLTMVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v-~~--dl~~~l~~~~~~~~~DVv  110 (257)
                      -+|.|.|++|.+|+.+++.+ ...+.+++...++...   ...+.    ..|+  .+ +.  ++.+.+.++..+..+|++
T Consensus       141 ~~vlI~g~~g~ig~~~~~~a-~~~G~~v~~~~~~~~~---~~~~~----~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v  212 (324)
T cd08292         141 QWLIQNAAGGAVGKLVAMLA-AARGINVINLVRRDAG---VAELR----ALGIGPVVSTEQPGWQDKVREAAGGAPISVA  212 (324)
T ss_pred             CEEEEcccccHHHHHHHHHH-HHCCCeEEEEecCHHH---HHHHH----hcCCCEEEcCCCchHHHHHHHHhCCCCCcEE
Confidence            47999999999999999855 4668888877764311   11111    1111  11 11  122211111112368999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      +|++......+.++.....|.=+.+|.+
T Consensus       213 ~d~~g~~~~~~~~~~l~~~g~~v~~g~~  240 (324)
T cd08292         213 LDSVGGKLAGELLSLLGEGGTLVSFGSM  240 (324)
T ss_pred             EECCCChhHHHHHHhhcCCcEEEEEecC
Confidence            9987655555555544455555557754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK08628 short chain dehydrogenase; Provisional

Probab=85.99  E-value=4.1  Score=35.39  Aligned_cols=83  Identities=20%  Similarity=0.211  Sum_probs=49.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .++.|+|++|.+|+.+++.+.+ .+..++.. +++.  ... ++              .+++...   ..++. +..|++
T Consensus         8 ~~ilItGasggiG~~la~~l~~-~G~~v~~~-~r~~--~~~-~~--------------~~~~~~~---~~~~~~~~~D~~   65 (258)
T PRK08628          8 KVVIVTGGASGIGAAISLRLAE-EGAIPVIF-GRSA--PDD-EF--------------AEELRAL---QPRAEFVQVDLT   65 (258)
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-cCCcEEEE-cCCh--hhH-HH--------------HHHHHhc---CCceEEEEccCC
Confidence            3799999999999999999875 56776543 3221  000 10              0111100   01122 456788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      .++.....+..+.+.  ++.+|+-..|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~   93 (258)
T PRK08628         66 DDAQCRDAVEQTVAKFGRIDGLVNNAGV   93 (258)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            888777666655443  57788777663

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=85.98  E-value=2.9  Score=35.45  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCChH-HHHHHHHHHhcCCcEEEEEEec
Q 025154           34 SNIKVIINGAVKEI-GRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        34 ~~ikV~V~Ga~GrM-G~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..-||.|+|+ |+| |+.+++.+.+ .+.++ -++++
T Consensus        43 ~gk~vlViG~-G~~~G~~~a~~L~~-~g~~V-~v~~r   76 (168)
T cd01080          43 AGKKVVVVGR-SNIVGKPLAALLLN-RNATV-TVCHS   76 (168)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhh-CCCEE-EEEEC
Confidence            3469999995 998 8889988875 46653 34544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=85.94  E-value=4.5  Score=37.98  Aligned_cols=32  Identities=22%  Similarity=0.423  Sum_probs=27.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -|.|.+|+|..|+.+.+ ++...++++||+.-.
T Consensus       153 tvvVSaAaGaVGsvvgQ-iAKlkG~rVVGiaGg  184 (340)
T COG2130         153 TVVVSAAAGAVGSVVGQ-IAKLKGCRVVGIAGG  184 (340)
T ss_pred             EEEEEecccccchHHHH-HHHhhCCeEEEecCC
Confidence            48899999999999997 456899999998753

>PRK12827 short chain dehydrogenase; Provisional

Probab=85.91  E-value=5.7  Score=33.91  Aligned_cols=89  Identities=15%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      +++|.|+|++|.+|+.+++.+.+ .+.+++.+........+..+              .+.+.+..  ....+. +..|+
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~-~g~~v~~~~~~~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~Dl   68 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAA-DGADVIVLDIHPMRGRAEAD--------------AVAAGIEA--AGGKALGLAFDV   68 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCeEEEEcCcccccHHHHH--------------HHHHHHHh--cCCcEEEEEccC
Confidence            36899999999999999998875 57777654321110100000              00011110  001222 34677


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      +.++.....+..+.+.  ++..|+=..|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~   97 (249)
T PRK12827         69 RDFAATRAALDAGVEEFGRLDILVNNAGI   97 (249)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            7777777766665553  56777766653

>PRK07890 short chain dehydrogenase; Provisional

Probab=85.89  E-value=3.9  Score=35.34  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=25.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus         6 k~vlItGa~~~IG~~la~~l~~-~G~~V~~~   35 (258)
T PRK07890          6 KVVVVSGVGPGLGRTLAVRAAR-AGADVVLA   35 (258)
T ss_pred             CEEEEECCCCcHHHHHHHHHHH-cCCEEEEE
Confidence            5799999999999999998874 57777643

>PRK12743 oxidoreductase; Provisional

Probab=85.86  E-value=9.6  Score=33.18  Aligned_cols=84  Identities=13%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      -+|.|.|++|.+|+.+++.+.+ .+.+++....+..  .....+.              +++...   +..++ +-+|++
T Consensus         3 k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dl~   62 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQ-QGFDIGITWHSDE--EGAKETA--------------EEVRSH---GVRAEIRQLDLS   62 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCCh--HHHHHHH--------------HHHHhc---CCceEEEEccCC
Confidence            3689999999999999999885 5788866544321  1111110              011100   01233 246788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++.....+..+.+.  .+.+|+-..|
T Consensus        63 ~~~~~~~~~~~~~~~~~~id~li~~ag   89 (256)
T PRK12743         63 DLPEGAQALDKLIQRLGRIDVLVNNAG   89 (256)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888777766655442  4667766554

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=85.82  E-value=7.1  Score=34.01  Aligned_cols=86  Identities=16%  Similarity=0.178  Sum_probs=51.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCH-HHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL-TMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl-~~~l~~~~~~~~~DVvIDF  113 (257)
                      -||.|+|+ |++|..-++.+.+ .+..++ ++++.. ..+..++..   ...+.. ..++ .+.+      ..+|.||-.
T Consensus        10 k~vlVvGg-G~va~rk~~~Ll~-~ga~Vt-Vvsp~~-~~~l~~l~~---~~~i~~~~~~~~~~dl------~~~~lVi~a   76 (205)
T TIGR01470        10 RAVLVVGG-GDVALRKARLLLK-AGAQLR-VIAEEL-ESELTLLAE---QGGITWLARCFDADIL------EGAFLVIAA   76 (205)
T ss_pred             CeEEEECc-CHHHHHHHHHHHH-CCCEEE-EEcCCC-CHHHHHHHH---cCCEEEEeCCCCHHHh------CCcEEEEEC
Confidence            38999996 9999998888775 566554 555432 233333331   123332 1121 1223      267877766


Q ss_pred             CC-hHhHHHHHHHHHHcCCCeE
Q 025154          114 TD-ASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       114 T~-p~~~~~~~~~a~~~Gi~vV  134 (257)
                      |. ++.-......|.+.|+++-
T Consensus        77 t~d~~ln~~i~~~a~~~~ilvn   98 (205)
T TIGR01470        77 TDDEELNRRVAHAARARGVPVN   98 (205)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEE
Confidence            64 4455667778888888874

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07806 short chain dehydrogenase; Provisional

Probab=85.60  E-value=11  Score=32.37  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=25.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .++.|.|++|.+|+.+++.+.+ .+.+++...
T Consensus         7 k~vlItGasggiG~~l~~~l~~-~G~~V~~~~   37 (248)
T PRK07806          7 KTALVTGSSRGIGADTAKILAG-AGAHVVVNY   37 (248)
T ss_pred             cEEEEECCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence            4799999999999999998874 578877654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=85.44  E-value=4.2  Score=35.92  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=27.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcE--EEEEEecC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSH   70 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e--Lvg~vd~~   70 (257)
                      .||.|+|| |.+|+.++..+.. .++.  =+.++|+.
T Consensus        26 ~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCC
Confidence            58999996 9999999998874 4766  56788865

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06823 ornithine cyclodeaminase; Validated

Probab=85.35  E-value=2.6  Score=39.26  Aligned_cols=91  Identities=11%  Similarity=0.041  Sum_probs=58.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--CCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~--~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      -+++|+| +|.+++.+++++..-..++=+-++++..  ..+..+.....  ...+.+.++.++++.      ++|||+-.
T Consensus       129 ~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIV~ta  199 (315)
T PRK06823        129 SAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSE--TALEEYRQYAQALGFAVNTTLDAAEVAH------AANLIVTT  199 (315)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhcCCcEEEECCHHHHhc------CCCEEEEe
Confidence            4899999 5999999999998877788888887541  11111111001  234555789999885      79999866


Q ss_pred             CChHhHHHHH-HHHHHcCCCeE-EeC
Q 025154          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (257)
Q Consensus       114 T~p~~~~~~~-~~a~~~Gi~vV-iGT  137 (257)
                      |....  ..+ ...++-|.+|. ||+
T Consensus       200 T~s~~--P~~~~~~l~~G~hi~~iGs  223 (315)
T PRK06823        200 TPSRE--PLLQAEDIQPGTHITAVGA  223 (315)
T ss_pred             cCCCC--ceeCHHHcCCCcEEEecCC
Confidence            63211  222 23457888876 553

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=85.34  E-value=4.8  Score=34.66  Aligned_cols=30  Identities=30%  Similarity=0.429  Sum_probs=25.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus         5 ~~vlItG~sg~iG~~la~~l~~-~g~~v~~~   34 (258)
T PRK12429          5 KVALVTGAASGIGLEIALALAK-EGAKVVIA   34 (258)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCeEEEE
Confidence            4799999999999999999875 57887654

>PLN02928 oxidoreductase family protein

Probab=85.26  E-value=2.4  Score=39.97  Aligned_cols=67  Identities=15%  Similarity=0.086  Sum_probs=41.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh--------hcCCCCCCeeeecCHHHHHhccccCCCc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV--------CDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~--------~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (257)
                      .+|+|+| +|+||+.+++.+. .-++++++ +|+.. ..+....        .......+  -+.++++++.      .+
T Consensus       160 ktvGIiG-~G~IG~~vA~~l~-afG~~V~~-~dr~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~ell~------~a  227 (347)
T PLN02928        160 KTVFILG-YGAIGIELAKRLR-PFGVKLLA-TRRSW-TSEPEDGLLIPNGDVDDLVDEKG--GHEDIYEFAG------EA  227 (347)
T ss_pred             CEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCC-ChhhhhhhccccccccccccccC--cccCHHHHHh------hC
Confidence            5899999 6999999999876 56888875 45431 0100000        00000011  3568999995      68


Q ss_pred             cEEEEcC
Q 025154          108 AVVIDFT  114 (257)
Q Consensus       108 DVvIDFT  114 (257)
                      |+|+-..
T Consensus       228 DiVvl~l  234 (347)
T PLN02928        228 DIVVLCC  234 (347)
T ss_pred             CEEEECC
Confidence            9888543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=85.19  E-value=12  Score=34.64  Aligned_cols=94  Identities=19%  Similarity=0.213  Sum_probs=50.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCe--ee-e--cCHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEI--PV-M--SDLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~~~g~~~~~gv--~v-~--~dl~~~l~~~~~~~~~DV  109 (257)
                      -+|.|.|+ |.+|...++.+. ..+.+ +++ +++..  .. .+++   .++|.  .+ +  .+..+.+.++..+..+|+
T Consensus       178 ~~VlV~G~-g~vG~~a~~~ak-~~G~~~Vi~-~~~~~--~~-~~~~---~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~  248 (358)
T TIGR03451       178 DSVAVIGC-GGVGDAAIAGAA-LAGASKIIA-VDIDD--RK-LEWA---REFGATHTVNSSGTDPVEAIRALTGGFGADV  248 (358)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCCeEEE-EcCCH--HH-HHHH---HHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence            37999996 999999998665 45775 554 44321  00 1111   01221  11 1  122222211111235899


Q ss_pred             EEEcCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154          110 VIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       110 vIDFT~-p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      +||++- ++.....+..+...|.=+++|.+
T Consensus       249 vid~~g~~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       249 VIDAVGRPETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEECCC
Confidence            999986 55555555555556766667765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	2e-17
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	7e-10
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	2e-09
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	6e-09

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Length = 245

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 33/159 (20%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           ++V + GA  ++G   V AV  A  + ++  +D    G+ + ++ D          ++  
Sbjct: 1   MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD---AGDPLSLLTDGN--------TE-- 47

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALSAF 151
                        VVIDFT    V  N++     G+ +VV    +    + + V +    
Sbjct: 48  -------------VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAE-RFQQVESWLV- 92

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE 190
             K +   LIAP  +IG++L    A  A+  + + E++E
Sbjct: 93  -AKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIE 130

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Length = 273

 Score = 57.2 bits (139), Expect = 7e-10
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 25/170 (14%)

Query: 32  PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEI 88
             +NI+V I GA   +GR  + A     G+++  A++   S  +G D G +        +
Sbjct: 2   HDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGV 60

Query: 89  PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLET 144
            V S L  V           V IDFT      +++      G   V+    +      + 
Sbjct: 61  TVQSSLDAVKDDFD------VFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEA-GKQA 113

Query: 145 VSALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
           +   +     A +  + A   S+G      LL++AA     +  ++EI+E
Sbjct: 114 IRDAA-----ADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYT-DIEIIE 157

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 272

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 26/168 (15%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S++K+ I GA   +GR  + AV  A    + GA+D   S  +G+D G      +   + +
Sbjct: 6   SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQTGVAL 63

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVS 146
             D+  V            +IDFT       ++  A    ++ V+    +    Q   + 
Sbjct: 64  TDDIERVC------AEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEP-QKAQLR 116

Query: 147 ALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
           A         +  + +  +S+G      LL+ AA   +  Y ++EI+E
Sbjct: 117 AAG-----EKIALVFSANMSVGVNVTMKLLEFAAKQFAQGY-DIEIIE 158

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 22/168 (13%), Positives = 65/168 (38%), Gaps = 25/168 (14%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
            ++++ + GA   +GR  + A+ + + +E+   +    S  V +D  ++   +  L + +
Sbjct: 20  GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRI 78

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVS 146
             D      +         ++DF+           A    +  ++    +    +   ++
Sbjct: 79  TDDPESAFSNTE------GILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKT-EEAQIA 131

Query: 147 ALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
             +          + +  +S+G    + L+++AA +    + ++EI E
Sbjct: 132 DFA-----KYTTIVKSGNMSLGVNLLANLVKRAAKALDDDF-DIEIYE 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	100.0
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	100.0
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	100.0
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	100.0
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	100.0
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	100.0
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	99.7
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	99.7
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	99.68
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	99.67
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	99.67
4had_A	350	Probable oxidoreductase protein; structural genomi	99.65
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.59
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	99.59
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	99.59
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	99.58
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	99.58
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	99.58
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.57
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.57
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	99.57
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	99.55
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	99.55
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	99.54
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	99.54
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	99.54
1ydw_A	362	AX110P-like protein; structural genomics, protein	99.54
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	99.54
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	99.53
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	99.53
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	99.53
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	99.53
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	99.53
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	99.52
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	99.52
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	99.52
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	99.52
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	99.52
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	99.51
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	99.51
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	99.5
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	99.5
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	99.5
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	99.49
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	99.49
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	99.49
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	99.49
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	99.49
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	99.49
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	99.47
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	99.47
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.47
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	99.46
4h3v_A	390	Oxidoreductase domain protein; structural genomics	99.45
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	99.45
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	99.44
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	99.44
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	99.43
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	99.4
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	99.4
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	99.39
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	99.38
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	99.35
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.34
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	99.32
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	99.25
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	99.24
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	99.22
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	99.22
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	99.04
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	98.96
2g0t_A	350	Conserved hypothetical protein; structural genomic	98.92
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	98.92
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.91
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	98.89
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.89
2obn_A	349	Hypothetical protein; structural genomics, joint c	98.8
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	98.8
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.8
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	98.77
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.75
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	98.71
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.71
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	98.66
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.6
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	98.55
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	98.53
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	98.5
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	98.41
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.38
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	98.37
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	98.37
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	98.37
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.36
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	98.34
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.31
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.3
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.28
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	98.26
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	98.26
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.23
2csu_A	457	457AA long hypothetical protein; structural genomi	98.22
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	98.21
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.17
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.17
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.16
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	98.15
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.14
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.14
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.13
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	98.12
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.11
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.1
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.08
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	98.07
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.07
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.06
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.06
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	98.05
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.04
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	98.03
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.03
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	98.03
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	98.01
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	97.97
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	97.97
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.97
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	97.96
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.96
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.96
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.95
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.94
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.94
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.94
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.93
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	97.91
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.9
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	97.89
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	97.88
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.87
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	97.87
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	97.86
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.85
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.85
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	97.84
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.84
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.8
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.79
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	97.77
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.77
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.76
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.74
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.73
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.68
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.68
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.67
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	97.65
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.63
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.61
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.58
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.55
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.55
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.54
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.53
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.52
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.49
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.49
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.48
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.47
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.43
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.4
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.4
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.38
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	97.37
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.37
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	97.34
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.32
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.32
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.32
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.31
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	97.3
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.26
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.24
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.24
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	97.23
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.22
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.2
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.17
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.15
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.11
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.08
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.07
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	97.06
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.04
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.0
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.97
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.97
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	96.96
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	96.95
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.94
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.92
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.9
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	96.89
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.89
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.88
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.86
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	96.82
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.82
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.81
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.8
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.78
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.77
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.77
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.77
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.74
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.7
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	96.7
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.67
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.66
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	96.66
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.65
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.64
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.64
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.63
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.63
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.61
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	96.55
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.54
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.5
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.49
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	96.49
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.43
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.43
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.4
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.4
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.4
3cin_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.37
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.37
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.34
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.33
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.31
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	96.29
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.27
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.25
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.22
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.18
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	96.18
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	96.17
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.17
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.16
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.15
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.14
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.13
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.13
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.12
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.12
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.08
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.07
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.05
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.05
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.04
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.03
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.01
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	94.97
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	95.95
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	95.95
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.93
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.91
1vjp_A	394	MYO-inositol-1-phosphate synthase-related protein;	95.88
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.87
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.86
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.85
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.84
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	95.84
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.82
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.82
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.78
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.78
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.68
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.66
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.65
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.64
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.61
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	95.58
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.56
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.56
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.53
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.5
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.49
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.47
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.43
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.43
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.42
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	95.42
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.38
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.34
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.34
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.34
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.33
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	95.33
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	95.32
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	95.28
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.24
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.2
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	95.14
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.14
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.13
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	95.13
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	95.12
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	95.12
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	95.12
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	95.07
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.05
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.03
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.03
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	95.0
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.99
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	94.98
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.97
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.97
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.96
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.92
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	94.87
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.83
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	94.81
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	94.8
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	94.79
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.77
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.7
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.64
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.63
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.62
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	94.6
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.59
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	94.59
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.52
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.5
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	94.49
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	94.48
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	94.45
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	94.45
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	94.43
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	94.43
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.42
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.38
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.35
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.32
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.31
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.31
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	94.3
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.29
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	94.28
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.23
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	94.23
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.23
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	94.18
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.17
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	94.17
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	94.16
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	94.15
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.14
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.13
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	94.13
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.11
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.1
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	94.08
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	93.97
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	93.95
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	93.93
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.83
4f6l_B	508	AUSA reductase domain protein; thioester reductase	93.78
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	93.76
4f6c_A	427	AUSA reductase domain protein; thioester reductase	93.76
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	93.74
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	93.74
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	93.74
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	93.73
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	93.67
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	93.64
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	93.64
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	93.56
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.53
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	93.52
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	93.52
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.47
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	93.42
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	93.41
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	93.39
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.37
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	93.36
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	93.33
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	93.33
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.3
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.29
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	93.29
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	93.27
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	93.15
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.04
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.03
3mjf_A	431	Phosphoribosylamine--glycine ligase; structural ge	92.98
3rih_A	293	Short chain dehydrogenase or reductase; structural	92.97
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.95
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	92.94
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	92.94
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	92.94
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.93
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.92
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	92.91
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	92.87
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.85
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	92.84
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	92.76
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	92.74
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	92.66
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	92.65
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	92.54
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	92.49
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	92.45
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	92.44
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	92.43
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	92.42
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	92.42
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	92.36
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.25
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	92.23
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	92.21
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	92.19
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	92.16
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	92.12
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	92.11
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	92.03
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	92.02
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.01
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	91.96
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.95
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.94
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	91.87
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	91.86
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	91.85
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.8
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	91.79
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	91.73
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	91.72
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	91.69
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	91.67
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	91.65
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	91.55
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	91.45
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	91.4
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	91.38
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.34
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	91.32
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	91.32
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	91.32
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	91.29
3cxt_A	291	Dehydrogenase with different specificities; rossma	91.25
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	91.13
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	91.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	90.99
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.91
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	90.89
3gms_A	340	Putative NADPH:quinone reductase; structural genom	90.86
4eye_A	342	Probable oxidoreductase; structural genomics, niai	90.84
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	90.83
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	90.82
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	90.77
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	90.75
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	90.75
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	90.74
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	90.7
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	90.7
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	90.67
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	90.67
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	90.65
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	90.64
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	90.59
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	90.57
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	90.53
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	90.5
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	90.49
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	90.49
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	90.47
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	90.47
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	90.46
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	90.4
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	90.38
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	90.36
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	90.36
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.32
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	90.28
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	90.27
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	90.27
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	90.25
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	90.23
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	90.21
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	90.2
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	90.17
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	90.14
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	90.09
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	90.05

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=100.00  E-value=2.2e-61  Score=439.14  Aligned_cols=211  Identities=15%  Similarity=0.198  Sum_probs=193.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      .|+||+|+||+||||+.+++++.++++++|+|++|+.   ..|+|+++++|.+ +.|+++++|++++++      ++||+
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~-~~gv~v~~dl~~ll~------~aDVv   92 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRITDDPESAFS------NTEGI   92 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS-CCSCBCBSCHHHHTT------SCSEE
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC-cCCceeeCCHHHHhc------CCCEE
Confidence            5799999999999999999999999999999999953   4689999999885 789999999999985      79999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC---CCCCeE
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF---HYKNVE  187 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~---~~~DiE  187 (257)
                      ||||+|+++.+++.+|+++|+|+|+|||||++++.++|+++|++  +|+|||||||+||||+.++++.+++   .+||+|
T Consensus        93 IDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~--~~~~~a~N~SiGv~ll~~l~~~aa~~l~~~~die  170 (288)
T 3ijp_A           93 LDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKY--TTIVKSGNMSLGVNLLANLVKRAAKALDDDFDIE  170 (288)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHTT--SEEEECSCCCHHHHHHHHHHHHHHHHSCTTSEEE
T ss_pred             EEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhCc--CCEEEECCCcHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            99999999999999999999999999999999999999999998  9999999999999997776555443   468999


Q ss_pred             EEeccCCCCCCCCCccHHHHHH---------------hhhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEE
Q 025154          188 IVESRPNARVRYMTRTLISMQV---------------CLRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILS  248 (257)
Q Consensus       188 IiE~HH~~K~DapSGTa~~l~~---------------~~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~  248 (257)
                      |+|+||++|+|||||||++++.               |.|+|..++|.+++|+|||+|+|+|||+    |.|+||+|||+
T Consensus       171 IiE~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g~r~~~~i~i~s~R~g~ivg~h~V~f~~~~e~i~i~  250 (288)
T 3ijp_A          171 IYEMHHANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHTGKREKGTIGFACSRGGTVIGDHSITFAGENERIVLS  250 (288)
T ss_dssp             EEEEECTTCCCSSCHHHHHHHHHHHHHTTSCHHHHEEECGGGCCSCCCTTCEEEEEEECTTCCEEEEEEEEETTEEEEEE
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHhCCCcccccccccccccCCcCCCCccEEEEECCCCCEEEEEEecCCCcEEEEE
Confidence            9999999999999999999963               4678888999999999999999999999    99999999999


Q ss_pred             eecCC
Q 025154          249 KILPS  253 (257)
Q Consensus       249 h~~~~  253 (257)
                      |.--|
T Consensus       251 H~a~s  255 (288)
T 3ijp_A          251 HIAQE  255 (288)
T ss_dssp             EEECC
T ss_pred             EEeCc
Confidence            98654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=100.00  E-value=1.5e-60  Score=430.89  Aligned_cols=209  Identities=21%  Similarity=0.261  Sum_probs=191.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ||||+|+||+|+||+.+++.+.++++++|++++|+.   ..|+|+++++|.. + ++++++|++++++      ++||||
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~-~-gv~v~~dl~~ll~------~~DVVI   78 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ-T-GVALTDDIERVCA------EADYLI   78 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCC-C-SCBCBCCHHHHHH------HCSEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCC-C-CceecCCHHHHhc------CCCEEE
Confidence            699999999999999999999999999999999954   4689999998874 4 9999999999996      699999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC---CCCCeEE
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF---HYKNVEI  188 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~---~~~DiEI  188 (257)
                      |||+|+++.+++..|+++|+|+|+|||||++++.++|+++|++  +|+|||||||+||||+.++++.+++   .+||+||
T Consensus        79 DfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~--~~vv~a~N~s~Gv~l~~~~~~~aa~~l~~~~diei  156 (272)
T 4f3y_A           79 DFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEK--IALVFSANMSVGVNVTMKLLEFAAKQFAQGYDIEI  156 (272)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTT--SEEEECSCCCHHHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEECCCCHHHHHHHHHHHHHHHhcCcCCCEEE
Confidence            9999999999999999999999999999999999999999998  9999999999999997777655544   4689999


Q ss_pred             EeccCCCCCCCCCccHHHHHH---------------hhhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEEe
Q 025154          189 VESRPNARVRYMTRTLISMQV---------------CLRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILSK  249 (257)
Q Consensus       189 iE~HH~~K~DapSGTa~~l~~---------------~~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~h  249 (257)
                      +|+||++|+|||||||++++.               |.|+|..++|.+++|+|||+|+|+|||+    |.++||+|||+|
T Consensus       157 ~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g~r~~~~i~i~s~R~g~ivg~h~v~f~~~~e~i~i~H  236 (272)
T 4f3y_A          157 IEAHHRHKVDAPSGTALMMGETIAAATGRSLDDCAVYGRHGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITH  236 (272)
T ss_dssp             EEEECTTCCSSSCHHHHHHHHHHHHTTTCCHHHHEEECCCSCCCSCCTTCEEEEEEECTTCCEEEEEEEECSSEEEEEEE
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHhCcccccccccccccccCCCCCCccCEEEEECCCCceEEEEEEcCCCcEEEEEE
Confidence            999999999999999999953               4578888999999999999999999999    999999999999


Q ss_pred             ecCC
Q 025154          250 ILPS  253 (257)
Q Consensus       250 ~~~~  253 (257)
                      .--|
T Consensus       237 ~a~~  240 (272)
T 4f3y_A          237 KSAS  240 (272)
T ss_dssp             EECC
T ss_pred             EeCc
Confidence            8654

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=4.3e-58  Score=408.70  Aligned_cols=195  Identities=17%  Similarity=0.224  Sum_probs=176.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ||||+|+|+ ||||+.+++.+.+.++ +|++++|+...           .+.++++++|+++++       ++||+||||
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~-----------~~~gv~v~~dl~~l~-------~~DVvIDft   62 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPK-----------ATTPYQQYQHIADVK-------GADVAIDFS   62 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC-------------CCSCBCSCTTTCT-------TCSEEEECS
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCcc-----------ccCCCceeCCHHHHh-------CCCEEEEeC
Confidence            799999998 9999999999999999 99999996521           145788999998876       489999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCCC--CCeEEEecc
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR  192 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~~--~DiEIiE~H  192 (257)
                      .|+.+.++++  +++|+|+|+|||||++++.++|+++|++  +|+|||||||+||||+.++++.+++++  ||+||+|+|
T Consensus        63 ~p~a~~~~~~--l~~g~~vVigTTG~s~e~~~~l~~aa~~--~~v~~a~N~S~Gv~l~~~~~~~aa~~l~~~dieI~E~H  138 (243)
T 3qy9_A           63 NPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELSQN--MPVFFSANMSYGVHALTKILAAAVPLLDDFDIELTEAH  138 (243)
T ss_dssp             CHHHHHHHHT--SCCCCCEEECCCSSHHHHHHHHHHHTTT--SEEEECSSCCHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred             ChHHHHHHHH--HhcCCceEeCCCCCCHHHHHHHHHHHhc--CCEEEECCccHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999999998  8999999999999999999999999999  999999999999999888877766644  999999999


Q ss_pred             CCCCCCCCCccHHHHHH------------hhhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEEeecCC
Q 025154          193 PNARVRYMTRTLISMQV------------CLRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILSKILPS  253 (257)
Q Consensus       193 H~~K~DapSGTa~~l~~------------~~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~h~~~~  253 (257)
                      |++|+|||||||++++.            |+|+|..++|+.++|||||+|+|+|||+    |+|+||+|||+|.--|
T Consensus       139 H~~K~DaPSGTA~~la~~i~~~~~~~~~~~~r~~~~~~r~~~~i~i~s~R~g~ivg~h~v~f~~~~e~i~i~H~a~s  215 (243)
T 3qy9_A          139 HNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQS  215 (243)
T ss_dssp             CTTCCSSSCHHHHHHHHHHHHHSTTCEEECCCTTTCCCCCTTEEEEEEEECTTCCEEEEEEEEETTEEEEEEEEESC
T ss_pred             CCCCCCCCCHHHHHHHHHHHhcCcccccccccccccCCccCCcceEEEEECCCCcEEEEEEEcCCCcEEEEEEEeCc
Confidence            99999999999999964            3567777899999999999999999999    9999999999998654

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=100.00  E-value=5.1e-56  Score=401.08  Aligned_cols=211  Identities=22%  Similarity=0.286  Sum_probs=188.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      .+|||+|+|++|+||+.+++.+.+.++++|++++|+.   ..|++++++++.. +.++++++|++++++      .+|||
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~-~~~v~~~~dl~~~l~------~~DvV   76 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKD------DFDVF   76 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTT------SCSEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC-cCCceecCCHHHHhc------CCCEE
Confidence            3589999999999999999999989999999999954   2377888887764 678999999998885      69999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC---CCCCeE
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF---HYKNVE  187 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~---~~~DiE  187 (257)
                      ||||+|+.+.+++.+|+++|+|+|+|||||++++.++|++++++  +|++|+||||+|+|++.++++.+++   .+||||
T Consensus        77 IDft~p~~~~~~~~~a~~~G~~vVigTtG~~~e~~~~L~~~a~~--~~vv~a~N~siGvn~~~~l~~~aa~~~~~~~die  154 (273)
T 1dih_A           77 IDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD--IAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIE  154 (273)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT--SCEEECSCCCHHHHHHHHHHHHHHHHHTTTSEEE
T ss_pred             EEcCChHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhcCC--CCEEEEecCcHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            99999999999999999999999999999999999999999988  8999999999999986665444433   469999


Q ss_pred             EEeccCCCCCCCCCccHHHHHH---------------hhhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEE
Q 025154          188 IVESRPNARVRYMTRTLISMQV---------------CLRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILS  248 (257)
Q Consensus       188 IiE~HH~~K~DapSGTa~~l~~---------------~~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~  248 (257)
                      |+|+||++|+|+|||||++++.               +.|+|+.++|++++|+|||+|+|+|+|+    |+++||+|||+
T Consensus       155 iiE~Hh~~K~DaPSGTA~~~ae~i~~~~~~~~~~~~~~~r~~~~~~r~~~~i~i~s~R~g~vvg~h~v~f~~~ge~i~i~  234 (273)
T 1dih_A          155 IIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEIT  234 (273)
T ss_dssp             EEEEECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCCCSCCTTCEEEEEEECTTCCEEEEEEEEETTEEEEEE
T ss_pred             EEEeecCCCCCCCCHHHHHHHHHHHHhhCCCccccccccccCccCCCCCCcceEEEEeCCCCCccEEEEEcCCCcEEEEE
Confidence            9999999999999999999963               3477888899999999999999999999    99999999999


Q ss_pred             eecCC
Q 025154          249 KILPS  253 (257)
Q Consensus       249 h~~~~  253 (257)
                      |.--|
T Consensus       235 H~a~~  239 (273)
T 1dih_A          235 HKASS  239 (273)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            98654

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=100.00  E-value=6.9e-55  Score=383.08  Aligned_cols=178  Identities=20%  Similarity=0.224  Sum_probs=158.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -||.+|+|++|||||.+++. .++++++|++++|+..   +                ++    ++      ++||+||||
T Consensus        12 ~~~~~v~Ga~GrMG~~i~~~-~~~~~~elv~~id~~~---~----------------~~----l~------~~DVvIDFT   61 (228)
T 1vm6_A           12 HMKYGIVGYSGRMGQEIQKV-FSEKGHELVLKVDVNG---V----------------EE----LD------SPDVVIDFS   61 (228)
T ss_dssp             CCEEEEETTTSHHHHHHHHH-HHHTTCEEEEEEETTE---E----------------EE----CS------CCSEEEECS
T ss_pred             cceeEEEEecCHHHHHHHHH-HhCCCCEEEEEEcCCC---c----------------cc----cc------CCCEEEECC
Confidence            47999999999999999885 4789999999999631   0                01    12      589999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC--CCCCeEEEecc
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF--HYKNVEIVESR  192 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~--~~~DiEIiE~H  192 (257)
                      +|+++++++++|+++|+|+|+|||||+++|.+.|++++++  +|+|||||||+||||+.++++.+++  ++|||||+|+|
T Consensus        62 ~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vv~apNfSlGvnll~~l~~~aA~~l~~ydiEIiE~H  139 (228)
T 1vm6_A           62 SPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE--VPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETH  139 (228)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT--SEEEECSCCCHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHhh--CCEEEeccccHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999999999999999999999999999999999999988  9999999999999998777666554  36899999999


Q ss_pred             CCCCCCCCCccHHHHHHhhhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEEeecCC
Q 025154          193 PNARVRYMTRTLISMQVCLRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILSKILPS  253 (257)
Q Consensus       193 H~~K~DapSGTa~~l~~~~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~h~~~~  253 (257)
                      |++|+|||||||++++...         +++|+|||+|+|+|||+    |.++||+|||+|.--|
T Consensus       140 H~~K~DAPSGTAl~lae~i---------~~~I~i~svR~g~ivg~H~V~F~~~gE~iei~H~a~s  195 (228)
T 1vm6_A          140 HRFKKDAPSGTAILLESAL---------GKSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAIS  195 (228)
T ss_dssp             CTTCCCSSCHHHHHHHHHT---------TSCCCEEEEECTTCCCEEEEEEECSSEEEEEEEEECC
T ss_pred             CCCCCCCCCHHHHHHHHhc---------ccCCCEEEEECCCCcEEEEEEEeCCCcEEEEEEEeCc
Confidence            9999999999999999764         36899999999999999    9999999999998654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=100.00  E-value=1.3e-54  Score=386.77  Aligned_cols=192  Identities=20%  Similarity=0.257  Sum_probs=170.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+|+||+||||+.+++.+.+.++++|++++|+.                     +|+++++.     .++||+||||+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------------~dl~~~~~-----~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------------DPLSLLTD-----GNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------------CCTHHHHH-----TTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------------CCHHHHhc-----cCCcEEEEccC
Confidence            69999999999999999999888999999999852                     23455554     37999999999


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhc-CceEEEccCchHHHHHHHHHHHHhcCCCCCeEEEeccCC
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA-SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPN  194 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~-gipvl~spNfSlGvnll~~~a~~l~~~~~DiEIiE~HH~  194 (257)
                      |+++.+++.+|+++|+|+|+|||||++++.++|+++|+++ ++|++|+||||+|+|++.++++.++++++||||+|+||+
T Consensus        55 p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~aa~~~~dieIiE~HH~  134 (245)
T 1p9l_A           55 PDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHP  134 (245)
T ss_dssp             TTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHHHGGGCSEEEEEEEECT
T ss_pred             hHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHHHHhhcCCEEEEECccc
Confidence            9999999999999999999999999999999999999965 799999999999999999999999887789999999999


Q ss_pred             CCCCCCCccHHHHHHhh--------------hccccCCCCC--CCceeeeeecCCccee----eccCCcEEEEEeecCC
Q 025154          195 ARVRYMTRTLISMQVCL--------------RHIYLYPKFQ--NNNSFHTKRKLKIASS----IIGVGEILILSKILPS  253 (257)
Q Consensus       195 ~K~DapSGTa~~l~~~~--------------r~g~~~~r~~--~~Igi~s~R~G~IvG~----f~g~~E~iel~h~~~~  253 (257)
                      +|+|||||||+++++..              |++..+.|..  ++|+|||+|+|+|||+    |+|+||+|||+|.--|
T Consensus       135 ~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~g~r~~~~~~i~i~s~R~g~ivg~h~V~f~~~~e~i~i~H~a~s  213 (245)
T 1p9l_A          135 HKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLD  213 (245)
T ss_dssp             TCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCTTTTCEEETTEEEEEEECTTCCEEEEEEEEETTEEEEEEEEECS
T ss_pred             CCCCCCCHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCcceEEEEECCCCCeEEEEEEcCCCcEEEEEEEeCc
Confidence            99999999999997422              3333455543  6999999999999999    9999999999998654

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=99.70  E-value=1.2e-16  Score=144.73  Aligned_cols=120  Identities=16%  Similarity=0.193  Sum_probs=102.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ..+||+|+|++|+||+.+++.+.+. ++++++.+++...|..         ..|+++|++++++.++    ..+|++|+|
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~Dv~Ii~   71 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGME---------VLGVPVYDTVKEAVAH----HEVDASIIF   71 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----SCCSEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCCCce---------ECCEEeeCCHHHHhhc----CCCCEEEEe
Confidence            3579999999999999999988765 8999988887532221         2589999999999853    379999999


Q ss_pred             CChHhHHHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~-vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      ++|+.+.+.++.|+++|++ +|+.|+||++++.++|.++|++.|+. ++.|| ++|+
T Consensus        72 vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~-vigPN-c~Gi  126 (288)
T 1oi7_A           72 VPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR-LIGGN-CPGI  126 (288)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EEESS-SCEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEeCC-CCeE
Confidence            9999999999999999999 78899999998889999999997774 78899 7777

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=99.70  E-value=1.4e-17  Score=152.32  Aligned_cols=154  Identities=13%  Similarity=0.064  Sum_probs=121.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +|||+|+|+ |+||+.+++.+.+.++++|++++|+....    .+     ..++++++|+++++.      ++||||++|
T Consensus         3 ~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~~----~~-----~~gv~~~~d~~~ll~------~~DvViiat   66 (320)
T 1f06_A            3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL----DT-----KTPVFDVADVDKHAD------DVDVLFLCM   66 (320)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC----SS-----SSCEEEGGGGGGTTT------TCSEEEECS
T ss_pred             CCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHHH----hh-----cCCCceeCCHHHHhc------CCCEEEEcC
Confidence            689999995 99999999999888899999999964211    11     146778889988873      799999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHH-HHHHHHhhhcCceEEEccCchHHHHHHHHHHHH-hcCCC----CCeE
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETV-SALSAFCDKASMGCLIAPTLSIGSILLQQAAIS-ASFHY----KNVE  187 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~-~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~-l~~~~----~DiE  187 (257)
                      .|..+.+++..|+++|+++|++++ +.+.++. ++|.++|++++.-.++..||+.|++.+.++... +....    +..+
T Consensus        67 p~~~h~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~~~p~~~~l~~~l~~~~~~~g~~~~~~~~  146 (320)
T 1f06_A           67 GSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWDPGMFSINRVYAAAVLAEHQQHTFWGP  146 (320)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSBTTBHHHHHHHHHHHHCSSEEEEEEECS
T ss_pred             CcHHHHHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEecCChHHHHHHHHHHhhccccccceecccCC
Confidence            999999999999999999999998 5677777 889999998774445555999999876666543 22122    1336


Q ss_pred             EEeccCCCCCCCCCccH
Q 025154          188 IVESRPNARVRYMTRTL  204 (257)
Q Consensus       188 IiE~HH~~K~DapSGTa  204 (257)
                      ..|.||..+++.++|++
T Consensus       147 ~~~~~~~~~~~~~~gi~  163 (320)
T 1f06_A          147 GLSQGHSDALRRIPGVQ  163 (320)
T ss_dssp             EECHHHHHHHHTSTTCS
T ss_pred             CcccccccchhhcCchh
Confidence            67899999998877753

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=99.68  E-value=3e-16  Score=142.72  Aligned_cols=119  Identities=20%  Similarity=0.310  Sum_probs=101.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCC-ccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA-RAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~-~DVvIDF  113 (257)
                      ..||+|+|++||||+.+++.+.+. ++++++.+++...|..         ..|+++|++++++.++    .. +|++|+|
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~~DvaIi~   78 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGSE---------VHGVPVYDSVKEALAE----HPEINTSIVF   78 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----CTTCCEEEEC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCCEEEEe
Confidence            458999999999999999988765 8888888886432221         2589999999999852    24 9999999


Q ss_pred             CChHhHHHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~-vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      ++|+.+.+.++.|+++|++ +|+.|+||++++.++|.++|++.|+. ++.|| ++|+
T Consensus        79 vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN-c~Gi  133 (297)
T 2yv2_A           79 VPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGPN-CPGA  133 (297)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS-SCEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC-CCee
Confidence            9999999999999999999 88889999998889999999997774 78899 7776

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=99.67  E-value=3.5e-16  Score=142.09  Aligned_cols=119  Identities=19%  Similarity=0.333  Sum_probs=101.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..||+|+|++|+||+.+++.+.+ .++++++.+++...|++         -.|+++|++++++.++    .++|++|+|+
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~-~g~~~V~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~Dv~ii~v   78 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLE-CGTKIVGGVTPGKGGQN---------VHGVPVFDTVKEAVKE----TDANASVIFV   78 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHH-TTCCEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHh-CCCeEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCEEEEcc
Confidence            45899999999999999998876 48888888886432221         2579999999999853    2799999999


Q ss_pred             ChHhHHHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          115 DASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~-vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      +|+.+.+.++.|+++|++ +|+.|+||++++.++|.++|++.|+. ++.|| ++|+
T Consensus        79 p~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN-c~Gi  132 (294)
T 2yv1_A           79 PAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK-IIGPN-TPGI  132 (294)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS-CCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC-Ccee
Confidence            999999999999999999 78889999998889999999998774 78899 7787

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=99.67  E-value=9.4e-16  Score=138.74  Aligned_cols=120  Identities=18%  Similarity=0.279  Sum_probs=102.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .++||+|+|++|+||+.+++.+.+. ++++++.+++...|.+         ..|+++|+|++++.++    ..+|++|+|
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g~~---------~~G~~vy~sl~el~~~----~~~D~viI~   71 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGTT---------HLGLPVFNTVREAVAA----TGATASVIY   71 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCcccce---------eCCeeccCCHHHHhhc----CCCCEEEEe
Confidence            4589999999999999999998865 7899999987532221         3579999999999853    379999999


Q ss_pred             CChHhHHHHHHHHHHcCCCe-EEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          114 TDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~v-ViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      ++|+.+.+.++.|+++|+++ |+.|+|++.++.++|.++|++.|+. ++.|| ++|+
T Consensus        72 tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~-liGPN-c~Gi  126 (288)
T 2nu8_A           72 VPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVR-MIGPN-TPGV  126 (288)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS-CCEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEecC-Ccce
Confidence            99999999999999999996 6778899998888999999998885 58999 5565

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=99.65  E-value=4.1e-16  Score=142.54  Aligned_cols=149  Identities=16%  Similarity=0.095  Sum_probs=114.5

Q ss_pred             CCCCceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccE
Q 025154           32 PQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DV  109 (257)
                      .++||||||+|+ |+||+. ++..+...++++|+|++|+..  ..+.+++   ++++++ +|+|+++++++    .++|+
T Consensus        20 ~~~mirigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a---~~~g~~~~y~d~~ell~~----~~iDa   89 (350)
T 4had_A           20 FQSMLRFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDL--TRAREMA---DRFSVPHAFGSYEEMLAS----DVIDA   89 (350)
T ss_dssp             --CCEEEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHHC----SSCSE
T ss_pred             ccCccEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCeeeCCHHHHhcC----CCCCE
Confidence            378999999995 999986 577888889999999999641  1223333   245664 79999999975    67999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH--HHHHHHHHHHHhcCCCCCe
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHYKNV  186 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl--Gvnll~~~a~~l~~~~~Di  186 (257)
                      |+..|++..+.+.+..|+++|+||+|++| ..+.++.++|.++|+++|+.+.+..|+-.  .+..++++.+.  +..-++
T Consensus        90 V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~--G~iG~i  167 (350)
T 4had_A           90 VYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDE--GAIGSL  167 (350)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHT--TTTSSE
T ss_pred             EEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhc--CCCCcc
Confidence            99999999999999999999999999999 78889999999999999999998877544  33334444421  123355


Q ss_pred             EEEecc
Q 025154          187 EIVESR  192 (257)
Q Consensus       187 EIiE~H  192 (257)
                      ..++.+
T Consensus       168 ~~i~~~  173 (350)
T 4had_A          168 RHVQGA  173 (350)
T ss_dssp             EEEEEE
T ss_pred             eeeeEE
Confidence            555543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.59  E-value=6.5e-15  Score=128.42  Aligned_cols=144  Identities=15%  Similarity=0.168  Sum_probs=115.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+|+|+ |+||+.+++.+. .++++|++++|+..   ..       ..    +++|++++++     .++|+||+++.
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~-~~g~~lv~v~d~~~---~~-------~~----~~~~~~~l~~-----~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLE-RNGFEIAAILDVRG---EH-------EK----MVRGIDEFLQ-----REMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEEECSSC---CC-------TT----EESSHHHHTT-----SCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHh-cCCCEEEEEEecCc---ch-------hh----hcCCHHHHhc-----CCCCEEEECCC
Confidence            69999995 999999999887 68999999998642   11       01    6789999884     37999999999


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCC-HHHH-HHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCCCCCeEEEeccC
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQ-LETV-SALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP  193 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s-~e~~-~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~~~DiEIiE~HH  193 (257)
                      ++.+.+++..++++|+++|+.+|+.. .++. ++|.++++++|+.+++.+|++-|+..+....  +  ....+.+.+.+|
T Consensus        60 ~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~--~--~~~~~~~~~~~~  135 (236)
T 2dc1_A           60 QQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSAS--E--LIEEIVLTTRKN  135 (236)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTG--G--GEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhh--c--cccEEEEEEEcC
Confidence            99999999999999999999999763 3444 7899999999999999999999987654221  2  234567778888


Q ss_pred             CCCCCCC----CccH
Q 025154          194 NARVRYM----TRTL  204 (257)
Q Consensus       194 ~~K~Dap----SGTa  204 (257)
                      ..+.+.+    .|++
T Consensus       136 ~~~~~~~~~~~~G~~  150 (236)
T 2dc1_A          136 WRQFGRKGVIFEGSA  150 (236)
T ss_dssp             GGGTTSCEEEEEEEH
T ss_pred             hHHcCcceEEEeccH
Confidence            8888776    4555

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=99.59  E-value=6.6e-14  Score=128.56  Aligned_cols=147  Identities=22%  Similarity=0.221  Sum_probs=116.4

Q ss_pred             CCCCceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           32 PQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      +..|+||+|+|+ |+||+. +++.+...++++|++++|+..  ..+..     ...++++|+|+++++++    .++|+|
T Consensus         4 M~~~~rvgiiG~-G~~g~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~~ll~~----~~vD~V   71 (352)
T 3kux_A            4 MADKIKVGLLGY-GYASKTFHAPLIMGTPGLELAGVSSSDA--SKVHA-----DWPAIPVVSDPQMLFND----PSIDLI   71 (352)
T ss_dssp             TTCCEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHT-----TCSSCCEESCHHHHHHC----SSCCEE
T ss_pred             ccCCceEEEECC-CHHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHh-----hCCCCceECCHHHHhcC----CCCCEE
Confidence            445799999995 999996 899888889999999999641  11111     12467889999999974    579999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHhcCCCCCeE
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVE  187 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l~~~~~DiE  187 (257)
                      +.+|.+..+.+.+..|+++|+||++++| ..+.++.++|.++|+++|+.+.++.|+  .-.+.-++++.+.  +..-++.
T Consensus        72 ~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~  149 (352)
T 3kux_A           72 VIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAE--GSLGNVV  149 (352)
T ss_dssp             EECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHH--TTTCSEE
T ss_pred             EEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHhc--CCCCceE
Confidence            9999999999999999999999999999 899999999999999999988887774  4444445555432  2344666


Q ss_pred             EEecc
Q 025154          188 IVESR  192 (257)
Q Consensus       188 IiE~H  192 (257)
                      -++.+
T Consensus       150 ~~~~~  154 (352)
T 3kux_A          150 YFESH  154 (352)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=99.59  E-value=1e-14  Score=133.72  Aligned_cols=145  Identities=9%  Similarity=0.008  Sum_probs=111.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh-------cCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK-------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~-------~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~  106 (257)
                      ++||||+|+ |+||+.+++.+..       .++++|+|++|+..  ..+.+++   +++++ .+|+|+++++++    .+
T Consensus        25 kirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a---~~~g~~~~y~d~~ell~~----~~   94 (393)
T 4fb5_A           25 PLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANA--GLAEARA---GEFGFEKATADWRALIAD----PE   94 (393)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC----TTHHHHH---HHHTCSEEESCHHHHHHC----TT
T ss_pred             CccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCH--HHHHHHH---HHhCCCeecCCHHHHhcC----CC
Confidence            589999995 9999999886643       36889999999642  1222333   24566 479999999975    68


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHH--HHHHHHHHHHhcCCC
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIG--SILLQQAAISASFHY  183 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlG--vnll~~~a~~l~~~~  183 (257)
                      +|+|+..|++..+.+.+..|+++|+||+|++| ..+.+|.++|.++|+++|+.+.+.-|+-.-  +.-++++.+.  +..
T Consensus        95 iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~--G~i  172 (393)
T 4fb5_A           95 VDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGD--GVI  172 (393)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHT--TTT
T ss_pred             CcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHc--CCC
Confidence            99999999999999999999999999999999 889999999999999999999988886543  3234444322  234


Q ss_pred             CCeEEEec
Q 025154          184 KNVEIVES  191 (257)
Q Consensus       184 ~DiEIiE~  191 (257)
                      -++..++.
T Consensus       173 G~i~~v~~  180 (393)
T 4fb5_A          173 GRVNHVRV  180 (393)
T ss_dssp             CSEEEEEE
T ss_pred             ccccceee
Confidence            46655553

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=99.58  E-value=1.7e-14  Score=132.00  Aligned_cols=117  Identities=15%  Similarity=0.184  Sum_probs=103.3

Q ss_pred             CceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |+||+|+|+ |+||+ .+++.+...++++|++++|+..            +..++++|+|+++++++   ..++|+|+.+
T Consensus        25 ~~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~------------~~~g~~~~~~~~~ll~~---~~~vD~V~i~   88 (330)
T 4ew6_A           25 PINLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHG------------TVEGVNSYTTIEAMLDA---EPSIDAVSLC   88 (330)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSC------------CCTTSEEESSHHHHHHH---CTTCCEEEEC
T ss_pred             CceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCCh------------hhcCCCccCCHHHHHhC---CCCCCEEEEe
Confidence            699999995 99999 7999999999999999998642            13578899999999962   0369999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      |.+..+.+.+..|+++|++|+++++ +.+.++.++|.++|+++|+.++++.|+-.
T Consensus        89 tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~  143 (330)
T 4ew6_A           89 MPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSRY  143 (330)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGG
T ss_pred             CCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEehhhc
Confidence            9999999999999999999999999 78999999999999999999988877654

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=99.58  E-value=9.5e-15  Score=134.48  Aligned_cols=146  Identities=11%  Similarity=0.002  Sum_probs=114.9

Q ss_pred             CceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ++||+|+|+ |+||+ .+++.+...++++|++++|+..  ..+..++   +..+++.++|+++++++    .++|+|+.+
T Consensus        27 ~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~ll~~----~~~D~V~i~   96 (350)
T 3rc1_A           27 PIRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRW--DRAKRFT---ERFGGEPVEGYPALLER----DDVDAVYVP   96 (350)
T ss_dssp             CEEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSH--HHHHHHH---HHHCSEEEESHHHHHTC----TTCSEEEEC
T ss_pred             ceEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCH--HHHHHHH---HHcCCCCcCCHHHHhcC----CCCCEEEEC
Confidence            589999995 99998 7899998889999999999641  1222333   24578888999999964    579999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHhcCCCCCeEEEe
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIVE  190 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l~~~~~DiEIiE  190 (257)
                      |.+..+.+.+..|+++|++|+++++ +.+.++.++|.++|+++|+.++++.|+  .-.+..++++.+.  +..-++..++
T Consensus        97 tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~v~  174 (350)
T 3rc1_A           97 LPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDE--GVIGEIRSFA  174 (350)
T ss_dssp             CCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHT--TTTCSEEEEE
T ss_pred             CCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhc--CCCCCeEEEE
Confidence            9999999999999999999999999 889999999999999999988877664  3444445555431  1234666555


Q ss_pred             cc
Q 025154          191 SR  192 (257)
Q Consensus       191 ~H  192 (257)
                      .+
T Consensus       175 ~~  176 (350)
T 3rc1_A          175 AS  176 (350)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=99.58  E-value=2.4e-14  Score=132.09  Aligned_cols=150  Identities=16%  Similarity=0.076  Sum_probs=116.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      .++||+|+|+ |.||+.+++.+. ..++++|++++|+..  ..+..++   ..++  +.+|+|+++++++    .++|+|
T Consensus        22 ~~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~ll~~----~~~D~V   91 (357)
T 3ec7_A           22 MTLKAGIVGI-GMIGSDHLRRLANTVSGVEVVAVCDIVA--GRAQAAL---DKYAIEAKDYNDYHDLIND----KDVEVV   91 (357)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTCTTEEEEEEECSST--THHHHHH---HHHTCCCEEESSHHHHHHC----TTCCEE
T ss_pred             CeeeEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEeCCH--HHHHHHH---HHhCCCCeeeCCHHHHhcC----CCCCEE
Confidence            3689999995 999999999998 679999999999642  1222222   1334  6789999999974    579999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceE-EEccC--chHHHHHHHHHHHHhcCCCCCe
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPT--LSIGSILLQQAAISASFHYKNV  186 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipv-l~spN--fSlGvnll~~~a~~l~~~~~Di  186 (257)
                      +..|.+..+.+.+..|+++|++|++.++ ..+.++.++|.++|+++|+.+ .++.|  |.-.+..++++.+.  +..-++
T Consensus        92 ~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i  169 (357)
T 3ec7_A           92 IITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDS--GEIGQP  169 (357)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHHHH--TTTCSE
T ss_pred             EEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHHhc--CCCCCe
Confidence            9999999999999999999999999999 889999999999999999877 56666  44444445555432  234566


Q ss_pred             EEEeccCCC
Q 025154          187 EIVESRPNA  195 (257)
Q Consensus       187 EIiE~HH~~  195 (257)
                      ..+...++.
T Consensus       170 ~~v~~~~~~  178 (357)
T 3ec7_A          170 LMVHGRHYN  178 (357)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            666655443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=99.57  E-value=3e-14  Score=129.69  Aligned_cols=146  Identities=16%  Similarity=0.134  Sum_probs=114.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+||+|+|+ |+||+.+++.+...++++|++++|+..  ..+..++   ...+++ +|+|+++++++    .++|+|+.
T Consensus         4 ~~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~~D~V~i   73 (329)
T 3evn_A            4 SKVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTL--ESAQAFA---NKYHLPKAYDKLEDMLAD----ESIDVIYV   73 (329)
T ss_dssp             -CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCS--STTCC------CCCCSCEESCHHHHHTC----TTCCEEEE
T ss_pred             CceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            3689999995 999999999998889999999999642  1112222   256775 79999999974    57999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHhcCCCCCeEEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIV  189 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l~~~~~DiEIi  189 (257)
                      +|.+..+.+.+..|+++|++|++.++ ..+.++.++|.++|+++|+.++.+.|+  .-.+..++++.+.  +..-++.-+
T Consensus        74 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~v  151 (329)
T 3evn_A           74 ATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLAS--GEIGEVISI  151 (329)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHT--TTTCSEEEE
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhC--CCCCCeEEE
Confidence            99999999999999999999999999 889999999999999999999988876  4555445555431  123455555


Q ss_pred             ec
Q 025154          190 ES  191 (257)
Q Consensus       190 E~  191 (257)
                      +.
T Consensus       152 ~~  153 (329)
T 3evn_A          152 SS  153 (329)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=99.57  E-value=8.5e-14  Score=127.80  Aligned_cols=149  Identities=20%  Similarity=0.148  Sum_probs=117.8

Q ss_pred             CCceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      +|+||+|+|+ |+||+ .++..+...++++|++++|+. ..+...+-.+   ..++++|+|+++++++    .++|+|+.
T Consensus         1 M~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~---~~~~~~~~~~~~ll~~----~~~D~V~i   71 (349)
T 3i23_A            1 MTVKMGFIGF-GKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFK---EKGVNFTADLNELLTD----PEIELITI   71 (349)
T ss_dssp             CCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHH---TTTCEEESCTHHHHSC----TTCCEEEE
T ss_pred             CeeEEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhC---CCCCeEECCHHHHhcC----CCCCEEEE
Confidence            3689999995 99998 788888888999999999975 2333322111   1467899999999974    57999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHhcCCCCCeEEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIV  189 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l~~~~~DiEIi  189 (257)
                      .|.+..+.+.+..|+++|+||++.++ ..+.++.++|.++|+++|+.+.++.|+  .-.+.-++++.+.  +..-++.-+
T Consensus        72 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~  149 (349)
T 3i23_A           72 CTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVEQ--GFLGEINEV  149 (349)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHH--TTTCSEEEE
T ss_pred             eCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--CCCCCEEEE
Confidence            99999999999999999999999999 889999999999999999999988884  4444445555432  234467667


Q ss_pred             eccC
Q 025154          190 ESRP  193 (257)
Q Consensus       190 E~HH  193 (257)
                      +.+.
T Consensus       150 ~~~~  153 (349)
T 3i23_A          150 ETHI  153 (349)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7653

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=99.57  E-value=2.7e-14  Score=130.48  Aligned_cols=150  Identities=13%  Similarity=0.134  Sum_probs=118.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .|+||+|+|+ |.||+.+++.+...++++|++++|+..  ..+..++   ...++++++|+++++++    .++|+|+.+
T Consensus         3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~~l~~----~~~D~V~i~   72 (344)
T 3euw_A            3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFI--EGAQRLA---EANGAEAVASPDEVFAR----DDIDGIVIG   72 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HTTTCEEESSHHHHTTC----SCCCEEEEC
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCceeCCHHHHhcC----CCCCEEEEe
Confidence            4789999995 999999999999889999999999641  1222333   24578889999999974    579999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHH--HHHHHHHHHHhcCCCCCeEEEe
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIG--SILLQQAAISASFHYKNVEIVE  190 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlG--vnll~~~a~~l~~~~~DiEIiE  190 (257)
                      |.+..+.+.+..|+++|++|++.++ +.+.++.++|.++|+++|+.++++.|+-.-  +..++++.+.  +..-++..++
T Consensus        73 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~v~  150 (344)
T 3euw_A           73 SPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVAN--QEIGNLEQLV  150 (344)
T ss_dssp             SCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHT--TTTSSEEEEE
T ss_pred             CCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhc--CCCCceEEEE
Confidence            9999999999999999999999999 899999999999999999988887776442  2234444322  1344676666


Q ss_pred             ccCCC
Q 025154          191 SRPNA  195 (257)
Q Consensus       191 ~HH~~  195 (257)
                      .+.+.
T Consensus       151 ~~~~~  155 (344)
T 3euw_A          151 IISRD  155 (344)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            65544

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=99.55  E-value=3.6e-14  Score=128.98  Aligned_cols=148  Identities=14%  Similarity=0.126  Sum_probs=115.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +|+||+|+|+ |+||+.+++.+...++++|++++|+..  ..+..++   ...+++ ++|+++++++    .++|+|+.+
T Consensus         2 m~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~-~~~~~~~l~~----~~~D~V~i~   70 (331)
T 4hkt_A            2 MTVRFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFP--AAAEAIA---GAYGCE-VRTIDAIEAA----ADIDAVVIC   70 (331)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HHTTCE-ECCHHHHHHC----TTCCEEEEC
T ss_pred             CceEEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHHHH---HHhCCC-cCCHHHHhcC----CCCCEEEEe
Confidence            3689999995 999999999999889999999999641  1222333   245778 9999999974    579999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCch--HHHHHHHHHHHHhcCCCCCeEEEe
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEIVE  190 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfS--lGvnll~~~a~~l~~~~~DiEIiE  190 (257)
                      |.+..+.+.+..|+++|++|++.+| +.+.++.++|.++++++|+.++++.|+-  -.+..++++.+.  +..-++..++
T Consensus        71 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~~  148 (331)
T 4hkt_A           71 TPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDD--GRIGEVEMVT  148 (331)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHT--TTTCSEEEEE
T ss_pred             CCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHc--CCCCceEEEE
Confidence            9999999999999999999999999 8999999999999999999888877743  333334444422  1234666666


Q ss_pred             ccCC
Q 025154          191 SRPN  194 (257)
Q Consensus       191 ~HH~  194 (257)
                      .+.+
T Consensus       149 ~~~~  152 (331)
T 4hkt_A          149 ITSR  152 (331)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=99.55  E-value=3.7e-14  Score=129.26  Aligned_cols=147  Identities=14%  Similarity=0.079  Sum_probs=115.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+||+|+|+ |+||+.+++.+.+.++++|++++|+..  ..+..++   ...++ .+|+|+++++++    .++|+|+.
T Consensus         4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~~----~~~D~V~i   73 (330)
T 3e9m_A            4 DKIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRL--ENAQKMA---KELAIPVAYGSYEELCKD----ETIDIIYI   73 (330)
T ss_dssp             CCEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSS--HHHHHHH---HHTTCCCCBSSHHHHHHC----TTCSEEEE
T ss_pred             CeEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH---HHcCCCceeCCHHHHhcC----CCCCEEEE
Confidence            3689999995 999999999999889999999998642  2223333   24566 479999999974    57999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCch--HHHHHHHHHHHHhcCCCCCeEEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEIV  189 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfS--lGvnll~~~a~~l~~~~~DiEIi  189 (257)
                      +|.+..+.+.+..|+++|++|++.+| +.+.++.++|.++|+++|+.++++.|+-  -.+..++++.+.  +..-++..+
T Consensus        74 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~i  151 (330)
T 3e9m_A           74 PTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQE--GGLGEILWV  151 (330)
T ss_dssp             CCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHT--TTTCSEEEE
T ss_pred             cCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhC--CCCCCeEEE
Confidence            99999999999999999999999999 8999999999999999999998888854  334335554431  123456555


Q ss_pred             ecc
Q 025154          190 ESR  192 (257)
Q Consensus       190 E~H  192 (257)
                      +.+
T Consensus       152 ~~~  154 (330)
T 3e9m_A          152 QSV  154 (330)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=99.54  E-value=2.5e-14  Score=131.28  Aligned_cols=146  Identities=11%  Similarity=0.082  Sum_probs=114.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .++||+|+|+ |.||+.+++.+...++++|++++|+..  ..+..++   ...+++.++|+++++++    .++|+|+.+
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~---~~~g~~~~~~~~~~l~~----~~~D~V~i~   73 (354)
T 3db2_A            4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTE--DKREKFG---KRYNCAGDATMEALLAR----EDVEMVIIT   73 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSH--HHHHHHH---HHHTCCCCSSHHHHHHC----SSCCEEEEC
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHhcC----CCCCEEEEe
Confidence            4689999995 999999999998889999999999641  1122222   23577789999999964    579999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHH--HHHHHHHHHhcCCCCCeEEEe
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS--ILLQQAAISASFHYKNVEIVE  190 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGv--nll~~~a~~l~~~~~DiEIiE  190 (257)
                      |.+..+.+.+..|+++|++|++.++ +.+.++.++|.++|+++|+.++++.|+-.-=  ..++++.+.  +..-++.-++
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~v~  151 (354)
T 3db2_A           74 VPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDT--KEIGEVSSIE  151 (354)
T ss_dssp             SCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHT--TTTCCEEEEE
T ss_pred             CChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhc--CCCCCeEEEE
Confidence            9999999999999999999999999 8999999999999999999888877765433  234444321  1234555555


Q ss_pred             c
Q 025154          191 S  191 (257)
Q Consensus       191 ~  191 (257)
                      .
T Consensus       152 ~  152 (354)
T 3db2_A          152 A  152 (354)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=99.54  E-value=6.5e-14  Score=128.55  Aligned_cols=146  Identities=16%  Similarity=0.140  Sum_probs=115.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+||+|+|+ |.||+.+++.+... ++++|++++|+..  ..+..++   ...++++++|+++++++    .++|+|+.
T Consensus        12 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~i   81 (354)
T 3q2i_A           12 RKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDP--AALKAAV---ERTGARGHASLTDMLAQ----TDADIVIL   81 (354)
T ss_dssp             SCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHHCCEEESCHHHHHHH----CCCSEEEE
T ss_pred             CcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCH--HHHHHHH---HHcCCceeCCHHHHhcC----CCCCEEEE
Confidence            5799999995 99999999999887 8999999999641  1122222   24577889999999974    57999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccC--chHHHHHHHHHHHHhcCCCCCeEEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spN--fSlGvnll~~~a~~l~~~~~DiEIi  189 (257)
                      +|.+..+.+.+..|+++|++|+++++ ..+.++.++|.++++++|+.++++.|  |+-.+..++++.+.  +..-++..+
T Consensus        82 ~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~v  159 (354)
T 3q2i_A           82 TTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQE--KRFGRIYMV  159 (354)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHT--TTTCSEEEE
T ss_pred             CCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhc--CCCCceEEE
Confidence            99999999999999999999999999 88999999999999999999988877  44444445444431  123455555


Q ss_pred             ec
Q 025154          190 ES  191 (257)
Q Consensus       190 E~  191 (257)
                      +.
T Consensus       160 ~~  161 (354)
T 3q2i_A          160 NV  161 (354)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=99.54  E-value=1.1e-13  Score=127.73  Aligned_cols=144  Identities=12%  Similarity=0.068  Sum_probs=115.3

Q ss_pred             CCceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEEE
Q 025154           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      .|+||+|+|+ |+||+. ++..+...++++|++++|+.. .+ +.      ... ++++|+|+++++++    .++|+|+
T Consensus         4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~-~~-~~------~~~~~~~~~~~~~~ll~~----~~vD~V~   70 (362)
T 3fhl_A            4 EIIKTGLAAF-GMSGQVFHAPFISTNPHFELYKIVERSK-EL-SK------ERYPQASIVRSFKELTED----PEIDLIV   70 (362)
T ss_dssp             CCEEEEESCC-SHHHHHTTHHHHHHCTTEEEEEEECSSC-CG-GG------TTCTTSEEESCSHHHHTC----TTCCEEE
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCH-HH-HH------HhCCCCceECCHHHHhcC----CCCCEEE
Confidence            4689999995 999997 888888889999999999652 11 11      133 67889999999974    5799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHhcCCCCCeEE
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEI  188 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l~~~~~DiEI  188 (257)
                      .+|.+..+.+.+..|+++|++|++.++ ..+.++.++|.++|+++|+.+.++.|+  .-.+.-++++.+.  +..-++.-
T Consensus        71 i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~  148 (362)
T 3fhl_A           71 VNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILAK--SLLGRLVE  148 (362)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHT--TTTSSEEE
T ss_pred             EeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHHc--CCCCCeEE
Confidence            999999999999999999999999999 889999999999999999999988884  4455445555432  12345655


Q ss_pred             Eecc
Q 025154          189 VESR  192 (257)
Q Consensus       189 iE~H  192 (257)
                      ++.+
T Consensus       149 v~~~  152 (362)
T 3fhl_A          149 YEST  152 (362)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=99.54  E-value=4.6e-14  Score=129.93  Aligned_cols=123  Identities=11%  Similarity=0.144  Sum_probs=102.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC----eeeecCHHHHHhccccCCCccE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g----v~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      .||||+|+|+ |+||+.+++.+...++++|++++|+..  ..+..++.   ..+    +.+++|+++++++    .++|+
T Consensus         5 ~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv~v~d~~~--~~~~~~a~---~~~~~~~~~~~~~~~~ll~~----~~~D~   74 (362)
T 1ydw_A            5 TQIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSL--EKAKAFAT---ANNYPESTKIHGSYESLLED----PEIDA   74 (362)
T ss_dssp             -CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHHH---HTTCCTTCEEESSHHHHHHC----TTCCE
T ss_pred             CceEEEEECc-hHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHHH---HhCCCCCCeeeCCHHHHhcC----CCCCE
Confidence            4699999995 999999999998889999999999641  11222221   233    5679999999974    47999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      |+.+|.+..+.+++..|+++|+||++++| .++.++.++|.++|+++|+.++.+.|+-
T Consensus        75 V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~~~~r  132 (362)
T 1ydw_A           75 LYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWV  132 (362)
T ss_dssp             EEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGG
T ss_pred             EEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEeec
Confidence            99999999999999999999999999997 7899999999999999999998877654

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=99.54  E-value=7.5e-14  Score=128.88  Aligned_cols=145  Identities=15%  Similarity=0.164  Sum_probs=115.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++||+|+|+ |.||+.+++.+...++++|++++|+..   +..+.+   ...++++|+|+++++++    .++|+|+.+|
T Consensus         5 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~---~~~~~a---~~~g~~~~~~~~~ll~~----~~~D~V~i~t   73 (359)
T 3e18_A            5 KYQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILA---EKREAA---AQKGLKIYESYEAVLAD----EKVDAVLIAT   73 (359)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSH---HHHHHH---HTTTCCBCSCHHHHHHC----TTCCEEEECS
T ss_pred             cCcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCCH---HHHHHH---HhcCCceeCCHHHHhcC----CCCCEEEEcC
Confidence            589999995 999999999999889999999999641   111222   25678899999999974    5799999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCch--HHHHHHHHHHHHhcCCCCCeEEEec
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEIVES  191 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfS--lGvnll~~~a~~l~~~~~DiEIiE~  191 (257)
                      .+..+.+.+..|+++|++|++.++ ..+.++.++|.++|+++|+.+.++.|+-  -.+..++++.+.  +..-++..++.
T Consensus        74 p~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~~~~  151 (359)
T 3e18_A           74 PNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQ--KTIGEMFHLES  151 (359)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHH--TTTSSEEEEEE
T ss_pred             CcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHc--CCCCCeEEEEE
Confidence            999999999999999999999998 8899999999999999999888877754  333335544432  23346655554


Q ss_pred             c
Q 025154          192 R  192 (257)
Q Consensus       192 H  192 (257)
                      +
T Consensus       152 ~  152 (359)
T 3e18_A          152 R  152 (359)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=99.53  E-value=3.3e-14  Score=132.37  Aligned_cols=145  Identities=14%  Similarity=0.141  Sum_probs=116.0

Q ss_pred             CceEEEEcCCC-hHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVK-EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~G-rMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ||||+|+|+ | .||+.+++.+...++++|++++|+..  ..+.+++   ..+++++|+|+++++++    .++|+|+.+
T Consensus         2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~ell~~----~~vD~V~i~   71 (387)
T 3moi_A            2 KIRFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNE--DVRERFG---KEYGIPVFATLAEMMQH----VQMDAVYIA   71 (387)
T ss_dssp             CEEEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCH--HHHHHHH---HHHTCCEESSHHHHHHH----SCCSEEEEC
T ss_pred             ceEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEEEeCCH--HHHHHHH---HHcCCCeECCHHHHHcC----CCCCEEEEc
Confidence            689999995 9 99999999999899999999999641  1122232   24578899999999975    579999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHH--HHHHHHHHHHhcCCCCCeEEEe
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIG--SILLQQAAISASFHYKNVEIVE  190 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlG--vnll~~~a~~l~~~~~DiEIiE  190 (257)
                      |.|..+.+++..|+++|+||++.++ ..+.++.++|.++|+++|+.+.++.|+-.-  +.-++++.+.  +..-++..++
T Consensus        72 tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~~  149 (387)
T 3moi_A           72 SPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAIVQE--GSVGRVSMLN  149 (387)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHH--CTTCCEEEEE
T ss_pred             CCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHhc--CCCCCeEEEE
Confidence            9999999999999999999999999 889999999999999999999888876543  3334444422  2334666666


Q ss_pred             c
Q 025154          191 S  191 (257)
Q Consensus       191 ~  191 (257)
                      .
T Consensus       150 ~  150 (387)
T 3moi_A          150 C  150 (387)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=99.53  E-value=1.2e-13  Score=125.67  Aligned_cols=149  Identities=8%  Similarity=0.068  Sum_probs=114.1

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      ..|+||+|+|+ |+||+.+++.+. ..+++++++++|+..  ..+..++   ...++ .+++|++++++.    .++|+|
T Consensus         6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~l~~----~~~D~V   75 (346)
T 3cea_A            6 RKPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDS--NQLEWAK---NELGVETTYTNYKDMIDT----ENIDAI   75 (346)
T ss_dssp             CCCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCH--HHHHHHH---HTTCCSEEESCHHHHHTT----SCCSEE
T ss_pred             CCcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCH--HHHHHHH---HHhCCCcccCCHHHHhcC----CCCCEE
Confidence            34799999995 999999999988 778999999998641  1122222   24566 678999999863    479999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhc-CceEEEccCc--hHHHHHHHHHHHHhcCCCCCe
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKA-SMGCLIAPTL--SIGSILLQQAAISASFHYKNV  186 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~-gipvl~spNf--SlGvnll~~~a~~l~~~~~Di  186 (257)
                      +++|.+..+.+.+..|+++|++|+++++ ..+.++.++|.++++++ |+.++.+.|+  +-++..+.++.+.  +..-++
T Consensus        76 ~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~--g~iG~i  153 (346)
T 3cea_A           76 FIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDN--GDIGKI  153 (346)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHT--TTTCSE
T ss_pred             EEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHc--CCCCCe
Confidence            9999999999999999999999999986 78889999999999998 8888877774  3355445544421  123466


Q ss_pred             EEEeccC
Q 025154          187 EIVESRP  193 (257)
Q Consensus       187 EIiE~HH  193 (257)
                      ..++.++
T Consensus       154 ~~v~~~~  160 (346)
T 3cea_A          154 IYMRGYG  160 (346)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            6666543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=99.53  E-value=4.3e-14  Score=127.74  Aligned_cols=138  Identities=19%  Similarity=0.190  Sum_probs=108.1

Q ss_pred             CCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      +|...++||+|+|+ |+||+.+++.+.+.+++++++++|+..  ..+..+.    .. +++++|+++++++    .++|+
T Consensus         5 p~~~~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v~v~d~~~--~~~~~~~----~~-~~~~~~~~~~l~~----~~~D~   72 (315)
T 3c1a_A            5 PANNSPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNP--DNLALVP----PG-CVIESDWRSVVSA----PEVEA   72 (315)
T ss_dssp             ----CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCH--HHHTTCC----TT-CEEESSTHHHHTC----TTCCE
T ss_pred             CCCCCcceEEEECC-cHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH----hh-CcccCCHHHHhhC----CCCCE
Confidence            34456799999995 999999999998888999999999641  1111121    12 6678999999963    47999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHh
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISA  179 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l  179 (257)
                      |+.+|.+..+.+.+..|+++|++|++.++ ..+.++.++|.++|+++|+.++.+.|+  +-.+..++++.+.+
T Consensus        73 V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~l  145 (315)
T 3c1a_A           73 VIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLFNPAWEALKADLTSI  145 (315)
T ss_dssp             EEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGGCHHHHHHHHTHHHH
T ss_pred             EEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhcCHHHHHHHHHHHHc
Confidence            99999999999999999999999999986 778999999999999999988887764  44555555555433

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=99.53  E-value=4.3e-14  Score=129.23  Aligned_cols=149  Identities=11%  Similarity=0.071  Sum_probs=116.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |+||+|+|+ |.||+.+++.+.+.++++|++++|+..  ..+..++   ...+++ +|+|+++++++    .++|+|+.+
T Consensus         2 ~~rvgiIG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~~----~~~D~V~i~   71 (344)
T 3ezy_A            2 SLRIGVIGL-GRIGTIHAENLKMIDDAILYAISDVRE--DRLREMK---EKLGVEKAYKDPHELIED----PNVDAVLVC   71 (344)
T ss_dssp             CEEEEEECC-SHHHHHHHHHGGGSTTEEEEEEECSCH--HHHHHHH---HHHTCSEEESSHHHHHHC----TTCCEEEEC
T ss_pred             eeEEEEEcC-CHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHhCCCceeCCHHHHhcC----CCCCEEEEc
Confidence            689999995 999999999998889999999999641  1122222   134554 79999999974    579999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHH--HHHHHHHHHHhcCCCCCeEEEe
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIG--SILLQQAAISASFHYKNVEIVE  190 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlG--vnll~~~a~~l~~~~~DiEIiE  190 (257)
                      |.+..+.+.+..|+++|++|++.++ ..+.++.++|.++|+++|+.++++.|+-.-  +..++++.+.  +..-++..++
T Consensus        72 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~~~  149 (344)
T 3ezy_A           72 SSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVEN--GTIGKPHVLR  149 (344)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHT--TTTSSEEEEE
T ss_pred             CCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHc--CCCCCeEEEE
Confidence            9999999999999999999999999 899999999999999999988887776443  3234444321  2345777776


Q ss_pred             ccCCC
Q 025154          191 SRPNA  195 (257)
Q Consensus       191 ~HH~~  195 (257)
                      .+.+.
T Consensus       150 ~~~~~  154 (344)
T 3ezy_A          150 ITSRD  154 (344)
T ss_dssp             EEEEC
T ss_pred             EEeeC
Confidence            65443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=99.52  E-value=2.1e-13  Score=126.06  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=115.0

Q ss_pred             CCceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+||+|+|+ |+||+. +++.+...++++|++++|+..  ..+..     ...++++|+|+++++++    .++|+|+.
T Consensus         6 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~~ll~~----~~~D~V~i   73 (364)
T 3e82_A            6 NTINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDE--EKVKR-----DLPDVTVIASPEAAVQH----PDVDLVVI   73 (364)
T ss_dssp             -CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHH-----HCTTSEEESCHHHHHTC----TTCSEEEE
T ss_pred             CcceEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHh-----hCCCCcEECCHHHHhcC----CCCCEEEE
Confidence            4699999995 999996 888888889999999999642  11111     12367889999999974    57999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccC--chHHHHHHHHHHHHhcCCCCCeEEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spN--fSlGvnll~~~a~~l~~~~~DiEIi  189 (257)
                      +|.+..+.+.+..|+++|++|++.+| ..+.++.++|.++|+++|+.+.+..|  |.-.+.-++++.+.  +..-++.-+
T Consensus        74 ~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~  151 (364)
T 3e82_A           74 ASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQ--GTLGAVKHF  151 (364)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--TTTCSEEEE
T ss_pred             eCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHHc--CCCcceEEE
Confidence            99999999999999999999999999 88999999999999999999988887  45555545555432  133466655


Q ss_pred             ecc
Q 025154          190 ESR  192 (257)
Q Consensus       190 E~H  192 (257)
                      +.+
T Consensus       152 ~~~  154 (364)
T 3e82_A          152 ESH  154 (364)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=99.52  E-value=1.5e-13  Score=123.89  Aligned_cols=121  Identities=15%  Similarity=0.157  Sum_probs=103.0

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      ..|+||+|+|+ |.||+.+++.+..   .++++|+++.|+....          ...+++ +.|+++++++    .++|+
T Consensus         5 ~~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----------~~~g~~-~~~~~ell~~----~~vD~   68 (294)
T 1lc0_A            5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----------SLDEVR-QISLEDALRS----QEIDV   68 (294)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----------EETTEE-BCCHHHHHHC----SSEEE
T ss_pred             CCcceEEEEEE-cHHHHHHHHHHhccccCCCEEEEEEECchHHH----------HHcCCC-CCCHHHHhcC----CCCCE
Confidence            45799999995 9999999998876   6889999999864211          134566 5899999974    57999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      |+..|.+..+.+++..|+++|+||++.++ ..+.++.++|.++|+++|+.++.+.|+-..=
T Consensus        69 V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p  129 (294)
T 1lc0_A           69 AYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLME  129 (294)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSH
T ss_pred             EEEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccH
Confidence            99999999999999999999999999998 6789999999999999999999888876554

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=99.52  E-value=7.3e-14  Score=127.73  Aligned_cols=149  Identities=14%  Similarity=0.109  Sum_probs=115.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |+||+|+|+ |.||+.+++.+. ..++++|++++|+..  ..+..+.   ..++  +.+|+|+++++++    .++|+|+
T Consensus         2 ~~rigiIG~-G~~g~~~~~~l~~~~~~~~l~av~d~~~--~~~~~~~---~~~g~~~~~~~~~~~ll~~----~~~D~V~   71 (344)
T 3mz0_A            2 SLRIGVIGT-GAIGKEHINRITNKLSGAEIVAVTDVNQ--EAAQKVV---EQYQLNATVYPNDDSLLAD----ENVDAVL   71 (344)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTCSSEEEEEEECSSH--HHHHHHH---HHTTCCCEEESSHHHHHHC----TTCCEEE
T ss_pred             eEEEEEECc-cHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCCeeeCCHHHHhcC----CCCCEEE
Confidence            689999995 999999999998 679999999999641  1122222   1345  6789999999974    5799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceE-EEccCc--hHHHHHHHHHHHHhcCCCCCeE
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPTL--SIGSILLQQAAISASFHYKNVE  187 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipv-l~spNf--SlGvnll~~~a~~l~~~~~DiE  187 (257)
                      .+|.+..+.+.+..|+++|++|++.++ ..+.++.++|.++|+++|+.+ .++.|+  .-.+..++++.+.  +..-++.
T Consensus        72 i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~  149 (344)
T 3mz0_A           72 VTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDN--HVIGEPL  149 (344)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHT--TTTSSEE
T ss_pred             ECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHc--CCCCCcE
Confidence            999999999999999999999999999 889999999999999999887 566663  3344334444322  2345676


Q ss_pred             EEeccCCC
Q 025154          188 IVESRPNA  195 (257)
Q Consensus       188 IiE~HH~~  195 (257)
                      .++..++.
T Consensus       150 ~v~~~~~~  157 (344)
T 3mz0_A          150 MIHCAHRN  157 (344)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            66665543

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=99.52  E-value=5.3e-14  Score=130.10  Aligned_cols=165  Identities=11%  Similarity=0.051  Sum_probs=109.8

Q ss_pred             cccccccccCccccccCCCCCCCceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-eee
Q 025154           13 HHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPV   90 (257)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g-v~v   90 (257)
                      ||-|+.|.-++...+= +++-.++||||+|+ |++|. .++..+. .++++|++++|+..  ..+..++   ..++ ..+
T Consensus         5 ~~~~~~~~~~~~~~~~-~~Mm~~irvgiiG~-G~~~~~~~~~~~~-~~~~~lvav~d~~~--~~a~~~a---~~~~~~~~   76 (361)
T 3u3x_A            5 HHHSSGVDLGTENLYF-QSMMDELRFAAVGL-NHNHIYGQVNCLL-RAGARLAGFHEKDD--ALAAEFS---AVYADARR   76 (361)
T ss_dssp             ----------------------CCEEEEECC-CSTTHHHHHHHHH-HTTCEEEEEECSCH--HHHHHHH---HHSSSCCE
T ss_pred             ccccccccCCCccchh-hhhccCcEEEEECc-CHHHHHHHHHHhh-cCCcEEEEEEcCCH--HHHHHHH---HHcCCCcc
Confidence            5667777777766544 22333589999995 99996 4565554 69999999999641  1222232   1344 578


Q ss_pred             ecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH--
Q 025154           91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--  167 (257)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl--  167 (257)
                      |+|+++++++    .++|+|+..|.+..+.+++..|+++|++|++.++ ..+.++.++|.++|+++|+.+.++.|+-.  
T Consensus        77 ~~~~~~ll~~----~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~  152 (361)
T 3u3x_A           77 IATAEEILED----ENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFES  152 (361)
T ss_dssp             ESCHHHHHTC----TTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTC
T ss_pred             cCCHHHHhcC----CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCC
Confidence            9999999974    5799999999999999999999999999999999 88999999999999999999998888644  


Q ss_pred             -HHHHHHHHHHHhcCCCCCeEEEec
Q 025154          168 -GSILLQQAAISASFHYKNVEIVES  191 (257)
Q Consensus       168 -Gvnll~~~a~~l~~~~~DiEIiE~  191 (257)
                       .+.-++++.+.  +..-++..++.
T Consensus       153 p~~~~~k~~i~~--g~iG~i~~~~~  175 (361)
T 3u3x_A          153 PATVKAGELVAA--GAIGEVVHIVG  175 (361)
T ss_dssp             HHHHHHHHHHHT--TTTSSEEEEEE
T ss_pred             HHHHHHHHHHHc--CCCCCeEEEEE
Confidence             34334444421  12345555554

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=99.52  E-value=8e-14  Score=127.68  Aligned_cols=147  Identities=12%  Similarity=0.059  Sum_probs=113.0

Q ss_pred             CCceEEEEcCCC-hHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEE
Q 025154           34 SNIKVIINGAVK-EIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~G-rMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      .++||+|+|+ | .||+.+++.+... ++++|++++|+..  ..+..++   ..+++ .+|+|+++++++    .++|+|
T Consensus        17 ~~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V   86 (340)
T 1zh8_A           17 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFA---KMVGNPAVFDSYEELLES----GLVDAV   86 (340)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHH---HHHSSCEEESCHHHHHHS----SCCSEE
T ss_pred             CceeEEEEec-CHHHHHHHHHHHHhCCCceEEEEEEcCCH--HHHHHHH---HHhCCCcccCCHHHHhcC----CCCCEE
Confidence            4799999995 9 8999999999887 8999999999641  1122222   13454 689999999974    579999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH--HHHHHHHHHHHhcCCCCCeE
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHYKNVE  187 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl--Gvnll~~~a~~l~~~~~DiE  187 (257)
                      +..|.+..+.+.+..|+++|++|++++| ..+.++.++|.++|+++|+.+.++.|+-.  .+..++++.+.  +..-++.
T Consensus        87 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~  164 (340)
T 1zh8_A           87 DLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELVES--GAIGDPV  164 (340)
T ss_dssp             EECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHHHT--TTTSSEE
T ss_pred             EEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--CCCCCcE
Confidence            9999999999999999999999999999 78999999999999999998888777644  33224443321  2234565


Q ss_pred             EEecc
Q 025154          188 IVESR  192 (257)
Q Consensus       188 IiE~H  192 (257)
                      -++.+
T Consensus       165 ~v~~~  169 (340)
T 1zh8_A          165 FMNWQ  169 (340)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=99.51  E-value=1.2e-13  Score=132.76  Aligned_cols=172  Identities=11%  Similarity=0.101  Sum_probs=125.3

Q ss_pred             eeeccccccccccCcc---------ccccCCCCCCCceEEEEcCC---ChHHHHHHHHHHhc-CCcEEEEEEecCCCCcc
Q 025154            9 HCRMHHISQNVKAKRF---------ISCSTNPPQSNIKVIINGAV---KEIGRAAVIAVTKA-RGMEVAGAIDSHSVGED   75 (257)
Q Consensus         9 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ikV~V~Ga~---GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d   75 (257)
                      |-.-||-|.||+.+.-         ..++.+|+ .|+||+|+|+.   |.||+.+++.+... ++++|++++|+..  ..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m-~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~--~~   81 (479)
T 2nvw_A            5 HHHHHHSSENLYFQGHMLANNNKRSKLSTVPSS-RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KS   81 (479)
T ss_dssp             ---CTTCGGGTGGGTCCCCCCCTTSGGGSSGGG-CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HH
T ss_pred             cccccccchhHHHHHHHHhhccccccCCCCCCC-CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCH--HH
Confidence            4456888889887643         22333333 36999999952   99999999999887 8999999999641  11


Q ss_pred             hhhhhcCCCCCCee---eecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcC------CCeEEeCC-CCCHHHH
Q 025154           76 IGMVCDMEQPLEIP---VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETV  145 (257)
Q Consensus        76 ~g~~~g~~~~~gv~---v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~G------i~vViGTT-G~s~e~~  145 (257)
                      +..++   ..++++   +|+|+++++++    .++|+|+..|.+..+.+.+..|+++|      ++|+|.++ ..+.++.
T Consensus        82 a~~~a---~~~g~~~~~~~~d~~ell~~----~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea  154 (479)
T 2nvw_A           82 SLQTI---EQLQLKHATGFDSLESFAQY----KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQA  154 (479)
T ss_dssp             HHHHH---HHTTCTTCEEESCHHHHHHC----TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHH
T ss_pred             HHHHH---HHcCCCcceeeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHH
Confidence            22222   134554   89999999974    57999999999999999999999999      99999998 7889999


Q ss_pred             HHHHHHhhhcC-ceEEEccCchH--HHHHHHHHHHHhcCCCCCeEEEecc
Q 025154          146 SALSAFCDKAS-MGCLIAPTLSI--GSILLQQAAISASFHYKNVEIVESR  192 (257)
Q Consensus       146 ~~L~~~a~~~g-ipvl~spNfSl--Gvnll~~~a~~l~~~~~DiEIiE~H  192 (257)
                      ++|.++|+++| +.++++.|+-.  .+..++++.+.  +..-++..++.+
T Consensus       155 ~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~v~~~  202 (479)
T 2nvw_A          155 EELYSISQQRANLQTIICLQGRKSPYIVRAKELISE--GCIGDINSIEIS  202 (479)
T ss_dssp             HHHHHHHHTCTTCEEEEECGGGGCHHHHHHHHHHHT--TTTCSEEEEEEE
T ss_pred             HHHHHHHHHcCCeEEEEEeccccCHHHHHHHHHHHc--CCCCCeEEEEEE
Confidence            99999999999 88887777543  33334444321  123356555544

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=99.51  E-value=5.7e-14  Score=131.43  Aligned_cols=134  Identities=14%  Similarity=0.109  Sum_probs=107.2

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhc--------CCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhcccc
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQ  103 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~--------~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~  103 (257)
                      ..+|||||+|+ |.||+.+++.+.+.        ++.+|+|++|+..  ..+.+++   +++++ .+|+|+++++++   
T Consensus        24 s~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~--~~a~~~a---~~~~~~~~y~d~~~ll~~---   94 (412)
T 4gqa_A           24 SARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQ--AMAERHA---AKLGAEKAYGDWRELVND---   94 (412)
T ss_dssp             -CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHHC---
T ss_pred             cccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEEEcCCH--HHHHHHH---HHcCCCeEECCHHHHhcC---
Confidence            34699999995 99999999988764        4789999999641  1122222   23455 489999999975   


Q ss_pred             CCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHH--HHHHHHH
Q 025154          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS--ILLQQAA  176 (257)
Q Consensus       104 ~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGv--nll~~~a  176 (257)
                       .++|+|+..|.+..+.+++..|+++|+||+|.+| ..+.++.++|.++|+++|+.+.+..|+-.-=  ..++++.
T Consensus        95 -~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i  169 (412)
T 4gqa_A           95 -PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIKTPAALLAKQII  169 (412)
T ss_dssp             -TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECGGGTSHHHHHHHHHH
T ss_pred             -CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccceecCHHHHHHHHHH
Confidence             6899999999999999999999999999999999 7899999999999999999999887764433  3344444

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=99.50  E-value=1.2e-13  Score=126.50  Aligned_cols=147  Identities=18%  Similarity=0.109  Sum_probs=113.6

Q ss_pred             CceEEEEcCCChHHHH-HHH-HHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRA-AVI-AVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~-~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |+||+|+|+ |+||+. ++. .+...++++|++++|+....  + +...  ...++++|+|+++++++    .++|+|+.
T Consensus         2 ~~rvgiiG~-G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~--~-~~~~--~~~~~~~~~~~~~ll~~----~~~D~V~i   71 (345)
T 3f4l_A            2 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKP--E-EQAP--IYSHIHFTSDLDEVLND----PDVKLVVV   71 (345)
T ss_dssp             CEEEEEECC-SHHHHHHTHHHHTTCTTTEEEEEEECSSCCG--G-GGSG--GGTTCEEESCTHHHHTC----TTEEEEEE
T ss_pred             ceEEEEEec-CHHHHHHHHHHHHhcCCCeEEEEEEcCCHhH--H-HHHH--hcCCCceECCHHHHhcC----CCCCEEEE
Confidence            689999995 999985 787 55778999999999964211  1 1111  13478899999999974    57999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHhcCCCCCeEEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIV  189 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l~~~~~DiEIi  189 (257)
                      .|.+..+.+.+..|+++|++|++.+| ..+.++.++|.++|+++|+.++++.|+  .-.+.-++++.+.  +..-++.-+
T Consensus        72 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~  149 (345)
T 3f4l_A           72 CTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVEV  149 (345)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHH--STTCSEEEE
T ss_pred             cCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHHhc--CCCCCeEEE
Confidence            99999999999999999999999998 789999999999999999999888775  3444445555432  123466666


Q ss_pred             eccC
Q 025154          190 ESRP  193 (257)
Q Consensus       190 E~HH  193 (257)
                      +.+.
T Consensus       150 ~~~~  153 (345)
T 3f4l_A          150 ESHF  153 (345)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6653

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=99.50  E-value=1.5e-13  Score=124.20  Aligned_cols=119  Identities=14%  Similarity=0.233  Sum_probs=98.3

Q ss_pred             CceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |+||+|+|+ |+||+. +++.+...++++|++++|+..  ..+..+.   ...++++++|++++ .     .++|+|+.+
T Consensus         5 ~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~---~~~g~~~~~~~~~l-~-----~~~D~V~i~   72 (319)
T 1tlt_A            5 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTR--AKALPIC---ESWRIPYADSLSSL-A-----ASCDAVFVH   72 (319)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSC--TTHHHHH---HHHTCCBCSSHHHH-H-----TTCSEEEEC
T ss_pred             cceEEEECC-CHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCccCcHHHh-h-----cCCCEEEEe
Confidence            689999995 999996 888888889999999999642  1122222   13456688899877 4     489999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      |.+..+.+.+..|+++|++|++++| +.+.++.++|.++|+++|+.++.+-|+
T Consensus        73 tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~  125 (319)
T 1tlt_A           73 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNR  125 (319)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGG
T ss_pred             CCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeeec
Confidence            9999999999999999999999986 788999999999999988888776555

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=99.50  E-value=2.8e-13  Score=129.48  Aligned_cols=157  Identities=19%  Similarity=0.139  Sum_probs=114.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----cCC----------------CCCCeeeecC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----DME----------------QPLEIPVMSD   93 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~----g~~----------------~~~gv~v~~d   93 (257)
                      .++||||+|+ |+||+.+++.+...++++|++++|...  ..+..++    |..                ....+.+|+|
T Consensus        22 k~IRVGIIGa-G~iG~~~~~~l~~~~~veLvAV~D~~~--era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D   98 (446)
T 3upl_A           22 KPIRIGLIGA-GEMGTDIVTQVARMQGIEVGALSARRL--PNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDD   98 (446)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTSSSEEEEEEECSST--HHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESC
T ss_pred             CceEEEEECC-hHHHHHHHHHHhhCCCcEEEEEEeCCH--HHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECC
Confidence            4799999996 999999999998899999999999642  1111111    100                0124678999


Q ss_pred             HHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH-
Q 025154           94 LTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL-  171 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl-  171 (257)
                      +++++++    .++|+||++| +|+.+.+++..|+++|++||+.+..++.++.++|.++|+++|+-+.++..=.-+..+ 
T Consensus        99 ~eeLL~d----~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp~~~~e  174 (446)
T 3upl_A           99 NDLILSN----PLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGAGDEPSSCME  174 (446)
T ss_dssp             HHHHHTC----TTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEECTTSHHHHHHH
T ss_pred             HHHHhcC----CCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeecCCcchHHHHH
Confidence            9999974    5799999999 567889999999999999999877777788899999999988888877654444422 


Q ss_pred             HHHHHHHhcCCCCCeEEEeccCCCCCCCC
Q 025154          172 LQQAAISASFHYKNVEIVESRPNARVRYM  200 (257)
Q Consensus       172 l~~~a~~l~~~~~DiEIiE~HH~~K~Dap  200 (257)
                      +-++++.+   ++.+-....-.+...+-+
T Consensus       175 Lv~~a~~~---G~~~v~~Gkg~~~~~~~~  200 (446)
T 3upl_A          175 LIEFVSAL---GYEVVSAGKGKNNPLNFD  200 (446)
T ss_dssp             HHHHHHHT---TCEEEEEEEEESSCCCTT
T ss_pred             HHHHHHhC---CCeEEEeccCcCCcccCC
Confidence            33445444   355555555544444433

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=99.49  E-value=8.2e-14  Score=132.08  Aligned_cols=149  Identities=9%  Similarity=0.027  Sum_probs=112.6

Q ss_pred             CCCceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-----eeecCHHHHHhccccCCC
Q 025154           33 QSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-----PVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-----~v~~dl~~~l~~~~~~~~  106 (257)
                      ..++||+|+|+ |+||+ .+++.+...++++|++++|+..  ..+..+.   ..+++     .+|+|+++++++    .+
T Consensus        81 ~~~irigiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~~~~ll~~----~~  150 (433)
T 1h6d_A           81 DRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNA--EKAKIVA---AEYGVDPRKIYDYSNFDKIAKD----PK  150 (433)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCH--HHHHHHH---HHTTCCGGGEECSSSGGGGGGC----TT
T ss_pred             CCceEEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCcccccccCCHHHHhcC----CC
Confidence            44689999995 99997 8999888888999999999641  1122222   12333     478999999864    57


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH--HHHHHHHHHHHhcCCC
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHY  183 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl--Gvnll~~~a~~l~~~~  183 (257)
                      +|+|+.+|.+..+.+++..|+++|+||+++++ .++.++.++|.++|+++|+.++++.|+-.  .+..+.++.+.  +..
T Consensus       151 vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~i  228 (433)
T 1h6d_A          151 IDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRE--NQL  228 (433)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHT--TSS
T ss_pred             CCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEechhcCHHHHHHHHHHHc--CCC
Confidence            99999999999999999999999999999997 78899999999999999998888777543  33334444321  233


Q ss_pred             CCeEEEeccC
Q 025154          184 KNVEIVESRP  193 (257)
Q Consensus       184 ~DiEIiE~HH  193 (257)
                      -++..++.++
T Consensus       229 G~i~~v~~~~  238 (433)
T 1h6d_A          229 GKLGMVTTDN  238 (433)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            4666666543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=99.49  E-value=4e-13  Score=122.10  Aligned_cols=124  Identities=12%  Similarity=0.137  Sum_probs=102.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHH--------hccccCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVL--------GSISQSK  105 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l--------~~~~~~~  105 (257)
                      .|+||+|+|+.|.||+.+++.+... +.+|++++|+...-   .....  .-.++.+|+|+++++        ++    .
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~---~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~----~   71 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNV---GLVDS--FFPEAEFFTEPEAFEAYLEDLRDRG----E   71 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCC---GGGGG--TCTTCEEESCHHHHHHHHHHHHHTT----C
T ss_pred             CceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHH---HHHHh--hCCCCceeCCHHHHHHHhhhhcccC----C
Confidence            3899999996578999999998865 79999999964211   12211  123678899999998        33    5


Q ss_pred             CccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      ++|+|+..|.+..+.++++.|+++|+||++.+| ..+.++.++|.++|+++|+.++.+.|+-.
T Consensus        72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~  134 (312)
T 3o9z_A           72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVLQLRV  134 (312)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCGGGG
T ss_pred             CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEeehhc
Confidence            899999999999999999999999999999999 88999999999999999998888777544

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=99.49  E-value=1.3e-13  Score=125.47  Aligned_cols=149  Identities=11%  Similarity=-0.016  Sum_probs=115.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |+||+|+| +|+||+.+++.+...+  +++|++++|+..  ..+.+++   ...++ .+|+|+++++++    .++|+|+
T Consensus         2 ~~rigiiG-~G~ig~~~~~~l~~~~~~~~~l~av~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V~   71 (334)
T 3ohs_X            2 ALRWGIVS-VGLISSDFTAVLQTLPRSEHQVVAVAARDL--SRAKEFA---QKHDIPKAYGSYEELAKD----PNVEVAY   71 (334)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTSCTTTEEEEEEECSSH--HHHHHHH---HHHTCSCEESSHHHHHHC----TTCCEEE
T ss_pred             ccEEEEEC-chHHHHHHHHHHHhCCCCCeEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEE
Confidence            68999999 5999999999887766  479999998641  1122232   23466 479999999974    5799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHhcCCCCCeEE
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEI  188 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l~~~~~DiEI  188 (257)
                      ..|.+..+.+++..|+++|+||++.++ ..+.++.++|.++|+++|+.++.+.|+  .-.+.-++++.+.  +..-++..
T Consensus        72 i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~  149 (334)
T 3ohs_X           72 VGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQ--GTLGDLRV  149 (334)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHH--TTTCSEEE
T ss_pred             ECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCHHHHHHHHHHhc--CCCCCeEE
Confidence            999999999999999999999999999 789999999999999999988887775  3344335544432  23446766


Q ss_pred             EeccCCC
Q 025154          189 VESRPNA  195 (257)
Q Consensus       189 iE~HH~~  195 (257)
                      ++.+...
T Consensus       150 v~~~~~~  156 (334)
T 3ohs_X          150 ARAEFGK  156 (334)
T ss_dssp             EEEEEEC
T ss_pred             EEEEccC
Confidence            6665443

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=99.49  E-value=2.3e-13  Score=125.62  Aligned_cols=148  Identities=15%  Similarity=0.148  Sum_probs=112.6

Q ss_pred             CceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ++||+|+|+ |.||+. +++.+.+.++++|++++|+..  ..+..++   ..+ ++++|+|+++++++    .++|+|+.
T Consensus         5 ~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V~i   74 (359)
T 3m2t_A            5 LIKVGLVGI-GAQMQENLLPSLLQMQDIRIVAACDSDL--ERARRVH---RFISDIPVLDNVPAMLNQ----VPLDAVVM   74 (359)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTCTTEEEEEEECSSH--HHHGGGG---GTSCSCCEESSHHHHHHH----SCCSEEEE
T ss_pred             cceEEEECC-CHHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHH---HhcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            589999995 999995 889998889999999999641  1122232   133 56789999999975    57899999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhc-CCCCCeEEEe
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS-FHYKNVEIVE  190 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~-~~~~DiEIiE  190 (257)
                      +|.+..+.+.+..|+++|++|+|.++ ..+.++.++|.++|+++|+.+.++.|+-.-=. +.++-+.+. +..-++..++
T Consensus        75 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~-~~~~k~~i~~g~iG~i~~~~  153 (359)
T 3m2t_A           75 AGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMNFKFARP-VRQLREMTQVDEFGETLHIQ  153 (359)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHH-HHHHHHHHTSGGGCCEEEEE
T ss_pred             cCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHH-HHHHHHHHHCCCCCCeEEEE
Confidence            99999999999999999999999999 88999999999999999988887766544322 222222222 1234666666


Q ss_pred             ccC
Q 025154          191 SRP  193 (257)
Q Consensus       191 ~HH  193 (257)
                      .+.
T Consensus       154 ~~~  156 (359)
T 3m2t_A          154 LNH  156 (359)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=99.49  E-value=1.2e-13  Score=124.41  Aligned_cols=121  Identities=17%  Similarity=0.232  Sum_probs=101.6

Q ss_pred             CceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |+||+|+|+ |+||+. +++.+...++++|++++|+..  ..+..++   ...+++.|+|++++++      ++|+|+.+
T Consensus         6 ~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~~~~~~~~~~~ll~------~~D~V~i~   73 (308)
T 3uuw_A            6 NIKMGMIGL-GSIAQKAYLPILTKSERFEFVGAFTPNK--VKREKIC---SDYRIMPFDSIESLAK------KCDCIFLH   73 (308)
T ss_dssp             CCEEEEECC-SHHHHHHTHHHHTSCSSSEEEEEECSCH--HHHHHHH---HHHTCCBCSCHHHHHT------TCSEEEEC
T ss_pred             cCcEEEEec-CHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHHh------cCCEEEEe
Confidence            689999995 999996 898888889999999999641  1122232   2346667999999995      79999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      |.+..+.+.+..|+++|+||++.++ ..+.++.++|.++|+++|+.+.++-|+-.
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~  128 (308)
T 3uuw_A           74 SSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFNRRF  128 (308)
T ss_dssp             CCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGGG
T ss_pred             CCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Confidence            9999999999999999999999988 78899999999999999998887776544

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=99.49  E-value=2.9e-13  Score=124.78  Aligned_cols=131  Identities=16%  Similarity=0.122  Sum_probs=108.2

Q ss_pred             CCceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+||||+|+ |+||+. +++.+...++++|++++|+..  ..+.+.     -.++++|+|+++++++    .++|+|+.
T Consensus         4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~-----~~~~~~~~~~~~ll~~----~~vD~V~i   71 (358)
T 3gdo_A            4 DTIKVGILGY-GLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKRD-----FPDAEVVHELEEITND----PAIELVIV   71 (358)
T ss_dssp             TCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHHH-----CTTSEEESSTHHHHTC----TTCCEEEE
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhh-----CCCCceECCHHHHhcC----CCCCEEEE
Confidence            4689999995 999996 888888889999999999642  111111     1267889999999974    57999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAA  176 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a  176 (257)
                      +|.+..+.+.+..|+++|++|++.+| ..+.++.++|.++|+++|+.+.++.|+  .-.+..++++.
T Consensus        72 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i  138 (358)
T 3gdo_A           72 TTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLI  138 (358)
T ss_dssp             CSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHH
Confidence            99999999999999999999999999 889999999999999999999988884  44444455554

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=99.47  E-value=3.2e-13  Score=122.27  Aligned_cols=144  Identities=15%  Similarity=0.067  Sum_probs=109.5

Q ss_pred             ceEEEEcCCChHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i-~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |||+|+|+ |+||+.+ ++.+.+ +++++++++|+..  ..+..+.   ...+++ +++|+++++++    .++|+|+.+
T Consensus         1 ~~vgiiG~-G~~g~~~~~~~l~~-~~~~~vav~d~~~--~~~~~~~---~~~g~~~~~~~~~~~l~~----~~~D~V~i~   69 (332)
T 2glx_A            1 NRWGLIGA-STIAREWVIGAIRA-TGGEVVSMMSTSA--ERGAAYA---TENGIGKSVTSVEELVGD----PDVDAVYVS   69 (332)
T ss_dssp             CEEEEESC-CHHHHHTHHHHHHH-TTCEEEEEECSCH--HHHHHHH---HHTTCSCCBSCHHHHHTC----TTCCEEEEC
T ss_pred             CeEEEEcc-cHHHHHhhhHHhhc-CCCeEEEEECCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEEe
Confidence            68999995 9999998 888877 8999999999641  1122222   134564 78999999863    469999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH--HHHHHHHHHHHhcCCCCCeEEEe
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHYKNVEIVE  190 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl--Gvnll~~~a~~l~~~~~DiEIiE  190 (257)
                      |.|..+.+.+..|+++|++|++.++ ..+.++.++|.++|+++|+.++.+.|+-.  ++.-++++.+.  +..-++.-++
T Consensus        70 tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~--g~iG~i~~v~  147 (332)
T 2glx_A           70 TTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAE--GRIGRPIAAR  147 (332)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHT--TTTSSEEEEE
T ss_pred             CChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHc--CCCCCeEEEE
Confidence            9999999999999999999999986 78899999999999999999988877543  44444444421  1233555555


Q ss_pred             cc
Q 025154          191 SR  192 (257)
Q Consensus       191 ~H  192 (257)
                      .+
T Consensus       148 ~~  149 (332)
T 2glx_A          148 VF  149 (332)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=99.47  E-value=7.9e-13  Score=120.43  Aligned_cols=128  Identities=13%  Similarity=0.122  Sum_probs=102.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhc---cc--cCCCcc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGS---IS--QSKARA  108 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~---~~--~~~~~D  108 (257)
                      .|+||||+|+.|.||+.+++.+... +.+|++++|+...-   ..+..  .-.++++|+|++++++.   +.  ++.++|
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~---~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD   75 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSV---GIIDS--ISPQSEFFTEFEFFLDHASNLKRDSATALD   75 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCC---GGGGG--TCTTCEEESSHHHHHHHHHHHTTSTTTSCC
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHH---HHHHh--hCCCCcEECCHHHHHHhhhhhhhccCCCCc
Confidence            3899999996578999999988865 89999999964211   12221  12367889999999820   00  015899


Q ss_pred             EEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       109 VvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      +|+..|.+..+.+++..|+++|+||++.+| ..+.++.++|.++|+++|+.++.+.|+-.
T Consensus        76 ~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~  135 (318)
T 3oa2_A           76 YVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNILQLRH  135 (318)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEECCGGGG
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhc
Confidence            999999999999999999999999999999 88999999999999999998888777543

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=99.47  E-value=1.8e-13  Score=124.10  Aligned_cols=125  Identities=21%  Similarity=0.244  Sum_probs=100.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--eecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ++||+|+|+ |+||+.+++.+.+.++++|++++|+...  .+..       .|++  .++++.+.       .++|+||+
T Consensus         9 ~irv~IIG~-G~iG~~~~~~l~~~~~~elvav~d~~~~--~~~~-------~g~~~~~~~~l~~~-------~~~DvVii   71 (304)
T 3bio_A            9 KIRAAIVGY-GNIGRYALQALREAPDFEIAGIVRRNPA--EVPF-------ELQPFRVVSDIEQL-------ESVDVALV   71 (304)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECC----------------CCTTSCEESSGGGS-------SSCCEEEE
T ss_pred             CCEEEEECC-hHHHHHHHHHHhcCCCCEEEEEEcCCHH--HHHH-------cCCCcCCHHHHHhC-------CCCCEEEE
Confidence            689999995 9999999999988899999999986421  1111       2333  24444433       37999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a  176 (257)
                      +|.+..+.+++..|+++|+++++.++  +.+.++.++|.+++++.|+.++++.+|..|+..+.++.
T Consensus        72 atp~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~~~~~p~~~~~~~~i  137 (304)
T 3bio_A           72 CSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIASGWDPGSDSVVRTL  137 (304)
T ss_dssp             CSCHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHH
Confidence            99999999999999999999999986  67889999999999999998899999999988665554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=99.46  E-value=8.6e-13  Score=125.12  Aligned_cols=156  Identities=11%  Similarity=0.053  Sum_probs=114.1

Q ss_pred             CCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeeec----CHHHHHhccc
Q 025154           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMS----DLTMVLGSIS  102 (257)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g---v~v~~----dl~~~l~~~~  102 (257)
                      .++-.++||+|+| +|.||+.+++.+...++++|++++|+..  ..+..++..-.+.|   +.+|+    |+++++++  
T Consensus        15 ~~~~~~~rvgiIG-~G~~g~~h~~~l~~~~~~~lvav~d~~~--~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~--   89 (444)
T 2ixa_A           15 DFNPKKVRIAFIA-VGLRGQTHVENMARRDDVEIVAFADPDP--YMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD--   89 (444)
T ss_dssp             ----CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSCH--HHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC--
T ss_pred             cCCCCCceEEEEe-cCHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC--
Confidence            3444579999999 5999999999998889999999999641  11222211000123   56788    99999974  


Q ss_pred             cCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHh
Q 025154          103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISA  179 (257)
Q Consensus       103 ~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l  179 (257)
                        .++|+|+..|.+..+.+++..|+++|++|++.++ ..+.++.++|.++|+++|+.+++..|+  .-++..+.++.+. 
T Consensus        90 --~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~-  166 (444)
T 2ixa_A           90 --KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMALENVCYRRDVMAILNMVRK-  166 (444)
T ss_dssp             --TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHHT-
T ss_pred             --CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHHc-
Confidence              5799999999999999999999999999999998 688999999999999999888887664  3343334443321 


Q ss_pred             cCCCCCeEEEeccCC
Q 025154          180 SFHYKNVEIVESRPN  194 (257)
Q Consensus       180 ~~~~~DiEIiE~HH~  194 (257)
                       +..-++.-++.+..
T Consensus       167 -G~iG~i~~v~~~~~  180 (444)
T 2ixa_A          167 -GMFGELVHGTGGYQ  180 (444)
T ss_dssp             -TTTCSEEEEEECCB
T ss_pred             -CCCCCeEEEEEEEe
Confidence             13457777776544

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=99.45  E-value=1.7e-13  Score=125.51  Aligned_cols=146  Identities=14%  Similarity=0.098  Sum_probs=109.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-------EEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-------EVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-------eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~  106 (257)
                      ++||||+|+ |.||+.+++.+...|++       +|++++|+..  ..+..++   .++++ .+|+|+++++++    .+
T Consensus         6 klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~--~~a~~~a---~~~g~~~~~~d~~~ll~~----~~   75 (390)
T 4h3v_A            6 NLGIGLIGY-AFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDA--EAVRAAA---GKLGWSTTETDWRTLLER----DD   75 (390)
T ss_dssp             EEEEEEECH-HHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESCHHHHTTC----TT
T ss_pred             cCcEEEEcC-CHHHHHHHHHHHhCccccccccCceEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CC
Confidence            589999995 99999999988877654       8999999641  1122222   23455 479999999975    68


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHH---hhhcCceEEEccCchH--HHHHHHHHHHHhc
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF---CDKASMGCLIAPTLSI--GSILLQQAAISAS  180 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~---a~~~gipvl~spNfSl--Gvnll~~~a~~l~  180 (257)
                      +|+|+..|.+..+.+.+..|+++|+||+|++| +.+.+|.++|.++   ++++|+.+.+.-|+-.  .+..++++.+.  
T Consensus        76 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R~~p~~~~~k~~i~~--  153 (390)
T 4h3v_A           76 VQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYRRVPAIALARKLVAD--  153 (390)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHT--
T ss_pred             CCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEEEeeeccCchHHHHHHHHHc--
Confidence            99999999999999999999999999999999 8889998888655   6668888888877644  33334444322  


Q ss_pred             CCCCCeEEEecc
Q 025154          181 FHYKNVEIVESR  192 (257)
Q Consensus       181 ~~~~DiEIiE~H  192 (257)
                      +..-++.-++.+
T Consensus       154 g~iG~i~~v~~~  165 (390)
T 4h3v_A          154 GKIGTVRHVRAQ  165 (390)
T ss_dssp             TSSCSEEEEEEE
T ss_pred             CCCCcceeeEEE
Confidence            234566666543

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=99.45  E-value=1.5e-13  Score=127.18  Aligned_cols=147  Identities=14%  Similarity=0.179  Sum_probs=111.8

Q ss_pred             CCceEEEEcCCChHHHH-HH----HHHHhcCCcEEE---------EEEecCCCCcchhhhhcCCCCCCee-eecCHHHHH
Q 025154           34 SNIKVIINGAVKEIGRA-AV----IAVTKARGMEVA---------GAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVL   98 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~----~~i~~~~~~eLv---------g~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l   98 (257)
                      .+|||+|+|++|.||+. ++    +.+...++++|+         +++|+..  ..+..++   ..++++ +|+|+++++
T Consensus         5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~--~~a~~~a---~~~~~~~~~~~~~~ll   79 (383)
T 3oqb_A            5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSA--EKVEALA---KRFNIARWTTDLDAAL   79 (383)
T ss_dssp             EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSS--HHHHHHH---HHTTCCCEESCHHHHH
T ss_pred             ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCH--HHHHHHH---HHhCCCcccCCHHHHh
Confidence            46999999966999998 88    888888877765         5777541  1222333   245674 799999999


Q ss_pred             hccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCch--HHHHHHHHH
Q 025154           99 GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQA  175 (257)
Q Consensus        99 ~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfS--lGvnll~~~  175 (257)
                      ++    .++|+|+.+|.+..+.+++..|+++|+||++.+| +.+.++.++|.++|+++|+.+.++.|+-  -.+..++++
T Consensus        80 ~~----~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~  155 (383)
T 3oqb_A           80 AD----KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIAFL  155 (383)
T ss_dssp             HC----SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHH
T ss_pred             cC----CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCHHHHHHHHH
Confidence            75    5799999999999999999999999999999998 7899999999999999999988888743  333334444


Q ss_pred             HHHhcCCCCCeEEEec
Q 025154          176 AISASFHYKNVEIVES  191 (257)
Q Consensus       176 a~~l~~~~~DiEIiE~  191 (257)
                      .+.  +..-++.-++.
T Consensus       156 i~~--g~iG~i~~~~~  169 (383)
T 3oqb_A          156 RDS--GFFGRILSVRG  169 (383)
T ss_dssp             HHT--TTTSSEEEEEE
T ss_pred             HHc--CCCCCcEEEEE
Confidence            321  12345655554

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=99.44  E-value=1.5e-13  Score=128.44  Aligned_cols=119  Identities=16%  Similarity=0.270  Sum_probs=98.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .++||+|+| +| +|+.+++.+.+.+ +++|+|++|+..  ..+.+++   +.+|++.|+|++++++      ++|+++.
T Consensus         6 ~~~rv~VvG-~G-~g~~h~~a~~~~~~~~elvav~~~~~--~~a~~~a---~~~gv~~~~~~~~l~~------~~D~v~i   72 (372)
T 4gmf_A            6 PKQRVLIVG-AK-FGEMYLNAFMQPPEGLELVGLLAQGS--ARSRELA---HAFGIPLYTSPEQITG------MPDIACI   72 (372)
T ss_dssp             -CEEEEEEC-ST-TTHHHHHTTSSCCTTEEEEEEECCSS--HHHHHHH---HHTTCCEESSGGGCCS------CCSEEEE
T ss_pred             CCCEEEEEe-hH-HHHHHHHHHHhCCCCeEEEEEECCCH--HHHHHHH---HHhCCCEECCHHHHhc------CCCEEEE
Confidence            378999999 58 8999999887765 699999999642  2233344   3678999999999985      6998887


Q ss_pred             cCChHhH----HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          113 FTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       113 FT~p~~~----~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      .|.+..+    .+.++.|+++|++|+++++ ++.+|.++|.++|+++|+.+.+..|+-
T Consensus        73 ~~p~~~h~~~~~~~a~~al~aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~~~v~~~yr  129 (372)
T 4gmf_A           73 VVRSTVAGGAGTQLARHFLARGVHVIQEHP-LHPDDISSLQTLAQEQGCCYWINTFYP  129 (372)
T ss_dssp             CCC--CTTSHHHHHHHHHHHTTCEEEEESC-CCHHHHHHHHHHHHHHTCCEEEECSGG
T ss_pred             ECCCcccchhHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHHHHHcCCEEEEcCccc
Confidence            8765555    8999999999999999999 899999999999999999999988774

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=99.44  E-value=4.2e-13  Score=125.34  Aligned_cols=152  Identities=15%  Similarity=0.113  Sum_probs=113.4

Q ss_pred             CCCceEEEEcCCCh---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCCCCCCe---eeecCHHHHHhccc-cC
Q 025154           33 QSNIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QS  104 (257)
Q Consensus        33 ~~~ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg-~vd~~~~g~d~g~~~g~~~~~gv---~v~~dl~~~l~~~~-~~  104 (257)
                      -.++||||+|+ |+   ||+.++..+...++++|++ ++|+..  ..+.+++   ..+|+   .+|+|+++++++-. .+
T Consensus        10 m~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~   83 (398)
T 3dty_A           10 PQPIRWAMVGG-GSQSQIGYIHRCAALRDNTFVLVAGAFDIDP--IRGSAFG---EQLGVDSERCYADYLSMFEQEARRA   83 (398)
T ss_dssp             CSCEEEEEEEC-CTTCSSHHHHHHHHHGGGSEEEEEEECCSSH--HHHHHHH---HHTTCCGGGBCSSHHHHHHHHTTCT
T ss_pred             cCcceEEEEcC-CccchhHHHHHHHHhhCCCeEEEEEEeCCCH--HHHHHHH---HHhCCCcceeeCCHHHHHhcccccC
Confidence            34799999995 99   9999999988888999998 567531  1122222   24566   58999999996200 00


Q ss_pred             CCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHH--HHHHHHHHHhcC
Q 025154          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS--ILLQQAAISASF  181 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGv--nll~~~a~~l~~  181 (257)
                      .++|+|+..|.+..+.+++..|+++|++|++.++ ..+.++.++|.++|+++|+.+.++.|+-.-=  ..++++.+.  +
T Consensus        84 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--G  161 (398)
T 3dty_A           84 DGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQAREMIAA--G  161 (398)
T ss_dssp             TCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHT--T
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--C
Confidence            2499999999999999999999999999999999 7899999999999999999998887765432  224443321  1


Q ss_pred             CCCCeEEEecc
Q 025154          182 HYKNVEIVESR  192 (257)
Q Consensus       182 ~~~DiEIiE~H  192 (257)
                      ..-++..++.+
T Consensus       162 ~iG~i~~v~~~  172 (398)
T 3dty_A          162 ELGDVRMVHMQ  172 (398)
T ss_dssp             TTCSEEEEEEE
T ss_pred             CCCCeEEEEEE
Confidence            33466666653

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=99.43  E-value=4.6e-13  Score=122.18  Aligned_cols=147  Identities=10%  Similarity=0.039  Sum_probs=108.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      +|+||+|+|+ |.+|+.+++.+  .++++|++++|+..  ..+...+...   +.+  .++|+|+++++++    .++|+
T Consensus         1 M~~rvgiiG~-G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~----~~vD~   70 (337)
T 3ip3_A            1 MSLKICVIGS-SGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAIS---EMNIKPKKYNNWWEMLEK----EKPDI   70 (337)
T ss_dssp             -CEEEEEECS-SSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHH---TTTCCCEECSSHHHHHHH----HCCSE
T ss_pred             CceEEEEEcc-chhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHH---HcCCCCcccCCHHHHhcC----CCCCE
Confidence            3789999995 88888888876  89999999999642  1222232221   223  4789999999974    57999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCce--EEEccCch--HHHHHHHHHHHHhcCCCC
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG--CLIAPTLS--IGSILLQQAAISASFHYK  184 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gip--vl~spNfS--lGvnll~~~a~~l~~~~~  184 (257)
                      |+..|.+..+.+.+..|+++|+||++.++ ..+.++.++|.++|+++|+.  +.++-|+-  -.+.-++++.+.  +..-
T Consensus        71 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG  148 (337)
T 3ip3_A           71 LVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSE--GAVG  148 (337)
T ss_dssp             EEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHHH--TTTS
T ss_pred             EEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHhc--CCcc
Confidence            99999999999999999999999999999 78899999999999999988  55554432  233334444321  1334


Q ss_pred             CeEEEecc
Q 025154          185 NVEIVESR  192 (257)
Q Consensus       185 DiEIiE~H  192 (257)
                      ++..++..
T Consensus       149 ~i~~i~~~  156 (337)
T 3ip3_A          149 EIRLVNTQ  156 (337)
T ss_dssp             SEEEEEEE
T ss_pred             ceEEEEEE
Confidence            66666543

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=99.40  E-value=9.3e-13  Score=124.90  Aligned_cols=148  Identities=11%  Similarity=0.053  Sum_probs=112.4

Q ss_pred             CCceEEEEcC---CChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeecCHHHHHhccccCCC
Q 025154           34 SNIKVIINGA---VKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga---~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv---~v~~dl~~~l~~~~~~~~  106 (257)
                      .++||+|+|+   .|.||+.+++.+... ++++|++++|+..  ..+..++   +.+++   .+|+|+++++++    .+
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~~ll~~----~~   89 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKI--ETSIATI---QRLKLSNATAFPTLESFASS----ST   89 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTCTTCEEESSHHHHHHC----SS
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCH--HHHHHHH---HHcCCCcceeeCCHHHHhcC----CC
Confidence            4689999995   399999999999988 8999999999641  1112222   13344   489999999974    57


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcC------CCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCch--HHHHHHHHHHH
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAI  177 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~G------i~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfS--lGvnll~~~a~  177 (257)
                      +|+|+.+|.+..+.+.+..|+++|      ++|+++++ ..+.++.++|.++|+++|+.++++-|+-  -.+.-++++.+
T Consensus        90 vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  169 (438)
T 3btv_A           90 IDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELIS  169 (438)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEECGGGGCHHHHHHHHHHH
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEecccccCHHHHHHHHHHH
Confidence            999999999999999999999999      99999997 7889999999999999898888776643  34433444442


Q ss_pred             HhcCCCCCeEEEecc
Q 025154          178 SASFHYKNVEIVESR  192 (257)
Q Consensus       178 ~l~~~~~DiEIiE~H  192 (257)
                      .  +..-++.-++.+
T Consensus       170 ~--G~iG~i~~v~~~  182 (438)
T 3btv_A          170 Q--GYIGDINSIEIA  182 (438)
T ss_dssp             T--TTTCSEEEEEEE
T ss_pred             c--CCCCCcEEEEEE
Confidence            1  123355555544

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=99.40  E-value=9.1e-13  Score=124.13  Aligned_cols=151  Identities=17%  Similarity=0.136  Sum_probs=111.7

Q ss_pred             CCceEEEEcCCCh---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCCCCCCe---eeecCHHHHHhccc-cCC
Q 025154           34 SNIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QSK  105 (257)
Q Consensus        34 ~~ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg-~vd~~~~g~d~g~~~g~~~~~gv---~v~~dl~~~l~~~~-~~~  105 (257)
                      .++||+|+|+ |+   ||+.++..+...++++|++ ++|+..  ..+.+++   ..+|+   .+|+|+++++++-. ...
T Consensus        36 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~~  109 (417)
T 3v5n_A           36 KRIRLGMVGG-GSGAFIGAVHRIAARLDDHYELVAGALSSTP--EKAEASG---RELGLDPSRVYSDFKEMAIREAKLKN  109 (417)
T ss_dssp             CCEEEEEESC-C--CHHHHHHHHHHHHTSCEEEEEEECCSSH--HHHHHHH---HHHTCCGGGBCSCHHHHHHHHHHCTT
T ss_pred             CcceEEEEcC-CCchHHHHHHHHHHhhCCCcEEEEEEeCCCH--HHHHHHH---HHcCCCcccccCCHHHHHhcccccCC
Confidence            4689999995 99   9999999888888899997 667531  1122222   23456   58999999996200 002


Q ss_pred             CccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHH--HHHHHHHHHhcCC
Q 025154          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS--ILLQQAAISASFH  182 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGv--nll~~~a~~l~~~  182 (257)
                      ++|+|+..|.+..+.+++..|+++|++|+|.++ ..+.++.++|.++|+++|+.++++.|+-.-=  ..++++.+.  +.
T Consensus       110 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~  187 (417)
T 3v5n_A          110 GIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQAREMIEN--GD  187 (417)
T ss_dssp             CCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHHHHHHHT--TT
T ss_pred             CCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHHHHHHhc--CC
Confidence            599999999999999999999999999999999 8899999999999999999999888765433  224444321  23


Q ss_pred             CCCeEEEecc
Q 025154          183 YKNVEIVESR  192 (257)
Q Consensus       183 ~~DiEIiE~H  192 (257)
                      .-++..++.+
T Consensus       188 iG~i~~v~~~  197 (417)
T 3v5n_A          188 IGAVRLVQME  197 (417)
T ss_dssp             TCSEEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            3466666553

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=99.39  E-value=3.4e-12  Score=116.16  Aligned_cols=144  Identities=11%  Similarity=0.073  Sum_probs=109.3

Q ss_pred             CceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |+||+|+|+ |.||. .+++.+. .++++|++++|+..  ..+..++   ..+ ++++|+|+++++++    .++|+|+.
T Consensus         4 ~~rvgiiG~-G~~~~~~~~~~l~-~~~~~lvav~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~~D~V~i   72 (336)
T 2p2s_A            4 KIRFAAIGL-AHNHIYDMCQQLI-DAGAELAGVFESDS--DNRAKFT---SLFPSVPFAASAEQLITD----ASIDLIAC   72 (336)
T ss_dssp             CCEEEEECC-SSTHHHHHHHHHH-HTTCEEEEEECSCT--TSCHHHH---HHSTTCCBCSCHHHHHTC----TTCCEEEE
T ss_pred             ccEEEEECC-ChHHHHHhhhhhc-CCCcEEEEEeCCCH--HHHHHHH---HhcCCCcccCCHHHHhhC----CCCCEEEE
Confidence            689999995 99996 5777664 68999999999642  1112222   123 56789999999974    57999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH--H-HHHHHHHHHHhcCCCCCeEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--G-SILLQQAAISASFHYKNVEI  188 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl--G-vnll~~~a~~l~~~~~DiEI  188 (257)
                      .|.+..+.+.+..|+++|+||++.++ ..+.++.++|.++|+++|+.++++-|+-.  . +.-++++.+.  +..-++.-
T Consensus        73 ~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~~~~~i~~--g~iG~i~~  150 (336)
T 2p2s_A           73 AVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNERINVDSALFAGELVQR--GEIGRVIQ  150 (336)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTCHHHHHHHHHHHT--TTTSSEEE
T ss_pred             eCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCcHHHHHHHHHHhC--CCCCceEE
Confidence            99999999999999999999999998 68889999999999999998888777643  3 5445555432  12345555


Q ss_pred             Eec
Q 025154          189 VES  191 (257)
Q Consensus       189 iE~  191 (257)
                      ++.
T Consensus       151 v~~  153 (336)
T 2p2s_A          151 TMG  153 (336)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=99.38  E-value=2.2e-12  Score=119.15  Aligned_cols=124  Identities=16%  Similarity=0.230  Sum_probs=99.4

Q ss_pred             CCceEEEEcCCChHHHHHHHH--HHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCeeeecCHHHHHhccccCC-Ccc
Q 025154           34 SNIKVIINGAVKEIGRAAVIA--VTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK-ARA  108 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~--i~~~~~~eLvg~vd~~~~g--~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~-~~D  108 (257)
                      ..+||.|.|++|||++.+++.  +.++++.++|+++++...|  +++.  .|. ...|+|+|++++++.++    . ++|
T Consensus         9 ~~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~--~G~-~~~Gvpvy~sv~ea~~~----~p~~D   81 (334)
T 3mwd_B            9 RHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFY--WGH-KEILIPVFKNMADAMRK----HPEVD   81 (334)
T ss_dssp             TTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEE--ETT-EEEEEEEESSHHHHHHH----CTTCC
T ss_pred             CCCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccceEe--ccC-ccCCceeeCCHHHHhhc----CCCCc
Confidence            347999999999999988876  5677899999999986532  4331  232 24689999999998863    2 579


Q ss_pred             EEEEcCChHhHHHHHHHHHH-cCCCeEEe-CCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          109 VVIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       109 VvIDFT~p~~~~~~~~~a~~-~Gi~vViG-TTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      ++|+|+.|..+.+.+..+++ +|++.|+. |+||++++.++|.++|+++|+ -++.||-
T Consensus        82 laVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~-rliGPNc  139 (334)
T 3mwd_B           82 VLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGV-TIIGPAT  139 (334)
T ss_dssp             EEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTC-EEECSSC
T ss_pred             EEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC-EEEccCC
Confidence            99999999998887766666 99988877 889999888899999999997 5667773

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=99.35  E-value=1e-12  Score=121.01  Aligned_cols=139  Identities=15%  Similarity=0.133  Sum_probs=105.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc--------CCcEEEEEEecCCC--C-cchhhhhcCCCCCCeeeec--CHHHHHhcc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSV--G-EDIGMVCDMEQPLEIPVMS--DLTMVLGSI  101 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--------~~~eLvg~vd~~~~--g-~d~g~~~g~~~~~gv~v~~--dl~~~l~~~  101 (257)
                      ||||+|+| +|.||+.+++.+.+.        ++++|++++|+...  . .+..++.... .....+++  |+++++++ 
T Consensus         2 mirvgIiG-~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~-~~~~~~~~~~d~~~ll~~-   78 (327)
T 3do5_A            2 MIKIAIVG-FGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMK-RETGMLRDDAKAIEVVRS-   78 (327)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHH-HHHSSCSBCCCHHHHHHH-
T ss_pred             cEEEEEEe-ccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhh-ccCccccCCCCHHHHhcC-
Confidence            89999999 599999999999887        89999999996421  1 1222221100 01123555  99999975 


Q ss_pred             ccCCCccEEEEcCChHhH----HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHH
Q 025154          102 SQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (257)
Q Consensus       102 ~~~~~~DVvIDFT~p~~~----~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~  177 (257)
                         .++|||||+|.+..+    .+++..|+++|++||+...+.-..+.++|.++|+++|+.+++-++..-|.-++..+-+
T Consensus        79 ---~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g~Pii~~l~~  155 (327)
T 3do5_A           79 ---ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKR  155 (327)
T ss_dssp             ---SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTTSCCHHHHHT
T ss_pred             ---CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeecCHHHHHHHH
Confidence               689999999977765    8999999999999999877655567889999999999999998888888766655544


Q ss_pred             Hh
Q 025154          178 SA  179 (257)
Q Consensus       178 ~l  179 (257)
                      .+
T Consensus       156 ~l  157 (327)
T 3do5_A          156 YL  157 (327)
T ss_dssp             TT
T ss_pred             Hh
Confidence            34

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=99.34  E-value=5.1e-12  Score=114.50  Aligned_cols=130  Identities=12%  Similarity=0.093  Sum_probs=99.6

Q ss_pred             CceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |+||+|+|+ |+||+ .+++.+...++++|+ ++|+..  ..+..++   ...+++. +.+..++++     .++|+|+.
T Consensus         2 ~~~igiIG~-G~ig~~~~~~~l~~~~~~~l~-v~d~~~--~~~~~~a---~~~g~~~~~~~~~~~l~-----~~~D~V~i   69 (323)
T 1xea_A            2 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLA---TRYRVSATCTDYRDVLQ-----YGVDAVMI   69 (323)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHH---HHTTCCCCCSSTTGGGG-----GCCSEEEE
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCCceEE-EEeCCH--HHHHHHH---HHcCCCccccCHHHHhh-----cCCCEEEE
Confidence            689999995 99998 599988878899999 888641  1122222   1345553 444444554     48999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAA  176 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a  176 (257)
                      +|.|..+.+.+..|+++|++|++.++ ..+.++.++|.++|+++|+.++.+-|+  .-.+..++++.
T Consensus        70 ~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i  136 (323)
T 1xea_A           70 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSEL  136 (323)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHH
T ss_pred             ECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHH
Confidence            99999999999999999999999987 678899999999999999988877664  44555455554

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=99.32  E-value=1.7e-12  Score=119.51  Aligned_cols=148  Identities=20%  Similarity=0.177  Sum_probs=108.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc------CCcEEEEEEecCCC--C--cchhhhhcCCCCCC-ee--eecCHHHHHhcc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHSV--G--EDIGMVCDMEQPLE-IP--VMSDLTMVLGSI  101 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~------~~~eLvg~vd~~~~--g--~d~g~~~g~~~~~g-v~--v~~dl~~~l~~~  101 (257)
                      ++||+|+| +|.||+.+++.+.+.      ++++|+++.|+...  .  .|...+.....+.+ ++  .+ |+++++.+ 
T Consensus         4 ~irVgIiG-~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~-   80 (325)
T 3ing_A            4 EIRIILMG-TGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG-   80 (325)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT-
T ss_pred             eEEEEEEc-CcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC-
Confidence            58999999 599999999999876      78999999996421  1  12222211000111 11  23 66777764 


Q ss_pred             ccCCCccEEEEcCCh----HhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHH
Q 025154          102 SQSKARAVVIDFTDA----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (257)
Q Consensus       102 ~~~~~~DVvIDFT~p----~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~  177 (257)
                         .++|||||+|.+    +...+++..|+++|+|||+...++..++.++|.++|+++|+.++|-+++.-|+-++..+-+
T Consensus        81 ---~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giPii~~l~~  157 (325)
T 3ing_A           81 ---EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVPLFSVLDY  157 (325)
T ss_dssp             ---SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHHHH
T ss_pred             ---CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCHHHHHHHH
Confidence               689999999965    4447999999999999999888777788899999999999999999999988876655544


Q ss_pred             HhcCCCCCeEEEe
Q 025154          178 SASFHYKNVEIVE  190 (257)
Q Consensus       178 ~l~~~~~DiEIiE  190 (257)
                      .+.  ...|.=++
T Consensus       158 ~l~--g~~I~~i~  168 (325)
T 3ing_A          158 SIL--PSKVKRFR  168 (325)
T ss_dssp             TCT--TCCEEEEE
T ss_pred             Hhh--CCCeeEEE
Confidence            442  34554444

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=99.25  E-value=1e-11  Score=118.64  Aligned_cols=133  Identities=14%  Similarity=0.171  Sum_probs=106.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh---------cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK---------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~---------~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (257)
                      ++||+|+| +|.||+.+++.+.+         .++++|++++|+..  .....+.     .+..+++|+++++++    .
T Consensus        10 ~irIgIIG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~--~~~~~~~-----~~~~~~~d~~ell~d----~   77 (444)
T 3mtj_A           10 PIHVGLLG-LGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNL--DKAEALA-----GGLPLTTNPFDVVDD----P   77 (444)
T ss_dssp             CEEEEEEC-CHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCH--HHHHHHH-----TTCCEESCTHHHHTC----T
T ss_pred             cccEEEEC-CCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCH--HHhhhhc-----ccCcccCCHHHHhcC----C
Confidence            47999999 59999999987764         27899999999642  1112222     145679999999975    6


Q ss_pred             CccEEEEcCCh-HhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHh
Q 025154          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (257)
Q Consensus       106 ~~DVvIDFT~p-~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l  179 (257)
                      ++|+|+++|.+ +.+.+++..|+++|+|||+..+.++.++.++|.++|+++|+.+++-++..-|+-++..+-+.+
T Consensus        78 diDvVve~tp~~~~h~~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~giPii~~LrelL  152 (444)
T 3mtj_A           78 EIDIVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIPIIKALREGL  152 (444)
T ss_dssp             TCCEEEECCCSSTTHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCHHHHHHTTT
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCChHHHHHHHHHH
Confidence            79999999975 899999999999999999998888888889999999999999988777777766655554444

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=99.24  E-value=1.9e-11  Score=108.81  Aligned_cols=115  Identities=15%  Similarity=0.076  Sum_probs=94.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -|||+++| +|.||+.+++.   . ++||+++++ .+.+           ++++.+++|++++++      ++|+||+..
T Consensus        12 ~~rV~i~G-~GaIG~~v~~~---~-~leLv~v~~-~k~g-----------elgv~a~~d~d~lla------~pD~VVe~A   68 (253)
T 1j5p_A           12 HMTVLIIG-MGNIGKKLVEL---G-NFEKIYAYD-RISK-----------DIPGVVRLDEFQVPS------DVSTVVECA   68 (253)
T ss_dssp             CCEEEEEC-CSHHHHHHHHH---S-CCSEEEEEC-SSCC-----------CCSSSEECSSCCCCT------TCCEEEECS
T ss_pred             cceEEEEC-cCHHHHHHHhc---C-CcEEEEEEe-cccc-----------ccCceeeCCHHHHhh------CCCEEEECC
Confidence            48999999 69999999997   4 999999998 3322           226677899999884      799999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCCC--CHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG~--s~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                      .++++.+++..++++|+++|+..+|.  +++-.++|+++|+++|..+++.+----|.-.+
T Consensus        69 ~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~GlD~l  128 (253)
T 1j5p_A           69 SPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVL  128 (253)
T ss_dssp             CHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccchhHH
Confidence            99999999999999999999988874  56667899999999999987755555554333

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=99.22  E-value=9.1e-12  Score=114.60  Aligned_cols=139  Identities=18%  Similarity=0.131  Sum_probs=101.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-------CcEEEEEEecCCC--Cc--chhhhhcCCCCCCee-eec---CHHHHHh
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHSV--GE--DIGMVCDMEQPLEIP-VMS---DLTMVLG   99 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-------~~eLvg~vd~~~~--g~--d~g~~~g~~~~~gv~-v~~---dl~~~l~   99 (257)
                      ++||+|+|+ |.||+.+++.+.+.+       +++|+++.|+...  ..  +..++.....+.+++ +++   |+++++ 
T Consensus         6 ~irvgIiG~-G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll-   83 (331)
T 3c8m_A            6 TINLSIFGL-GNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL-   83 (331)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH-
T ss_pred             EEeEEEEec-CHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh-
Confidence            589999995 999999999988766       6899999996421  01  111111000012332 566   999998 


Q ss_pred             ccccCCCccEEEEcCChH----hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154          100 SISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~p~----~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~  175 (257)
                      +    .++|||||+|.+.    .+.+++..|+++|+|||+....+..++.++|.++|+++|+.++|.++..-|+-++..+
T Consensus        84 ~----~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~giPii~~l  159 (331)
T 3c8m_A           84 A----RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGGVPLFSFI  159 (331)
T ss_dssp             H----SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHH
T ss_pred             C----CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccccHHHHHH
Confidence            4    6899999999774    8899999999999999986444445778899999999999999988888775544444


Q ss_pred             HHHh
Q 025154          176 AISA  179 (257)
Q Consensus       176 a~~l  179 (257)
                      -+.+
T Consensus       160 ~~~l  163 (331)
T 3c8m_A          160 DYSV  163 (331)
T ss_dssp             HHHS
T ss_pred             HHHh
Confidence            4334

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=99.22  E-value=1.6e-10  Score=105.35  Aligned_cols=115  Identities=13%  Similarity=0.151  Sum_probs=95.1

Q ss_pred             ceEEEE-cCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~-Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.++|+ |++|++|+.+++.+.+ .++++++.+++...|.+         -.|+++|.+++++.++    ..+|++|.|+
T Consensus        14 ~siaVV~Gasg~~G~~~~~~l~~-~G~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~vD~avI~v   79 (305)
T 2fp4_A           14 NTKVICQGFTGKQGTFHSQQALE-YGTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYV   79 (305)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHH-CCCcEEEEeCCCcCcce---------ECCeeeechHHHhhhc----CCCCEEEEec
Confidence            347777 9999999999998765 57888888887533322         2479999999999853    3799999999


Q ss_pred             ChHhHHHHHHHHHHcCCCe-EEeCCCCCHHHHHHHHHHhhhc-CceEEEccCc
Q 025154          115 DASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKA-SMGCLIAPTL  165 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~v-ViGTTG~s~e~~~~L~~~a~~~-gipvl~spNf  165 (257)
                      .|+.+.+.++.|++.|++. |+-|+|++.++..++.++++++ |+. ++.||.
T Consensus        80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~-liGPnc  131 (305)
T 2fp4_A           80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR-LIGPNC  131 (305)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE-EECSSS
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE-EEeCCC
Confidence            9999999999999999998 6788899987777899999998 887 577885

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=99.04  E-value=7.1e-10  Score=103.12  Aligned_cols=126  Identities=15%  Similarity=0.147  Sum_probs=90.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhc---------
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGS---------  100 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~---------  100 (257)
                      .|+||+|+|+ |.||+.+++.+.+.+   +++|+++.|+..  .   .+.   .++ |+..++++++++++         
T Consensus         3 k~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~---~~~---~~~~gi~~~~~~~e~l~~~~~~~~did   73 (358)
T 1ebf_A            3 KVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAER--S---LIS---KDFSPLNVGSDWKAALAASTTKTLPLD   73 (358)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSB--E---EEC---SSCSCCSCTTCHHHHHHTCCCBCCCHH
T ss_pred             ceEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEEEEEECCh--h---hhc---cccCCCCccccHHHHHhcccCCCCCHH
Confidence            4699999995 999999999998776   689999998531  1   111   122 45555666666642         


Q ss_pred             -----cccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE--eCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          101 -----ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV--YVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       101 -----~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi--GTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                           +.....+|||||.|....+.+....|+++|+|||+  -.+ ..+.++.++|. +|+++|+.++|-++..-|+
T Consensus        74 ~v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg~gi  149 (358)
T 1ebf_A           74 DLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVGAGL  149 (358)
T ss_dssp             HHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTTTTS
T ss_pred             HHHHHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccccccCC
Confidence                 00001238999999766666666799999999998  333 45557888999 9999999988876666663

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=98.96  E-value=2.1e-09  Score=98.67  Aligned_cols=95  Identities=21%  Similarity=0.242  Sum_probs=74.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc---CC------------CCCCeeeecCHHHHHh
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD---ME------------QPLEIPVMSDLTMVLG   99 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g---~~------------~~~gv~v~~dl~~~l~   99 (257)
                      |+||||+|+ |+||+.+++++.+.|+++|+++.|+.  .+.++.++.   ..            ...++.++.|+++++.
T Consensus         2 ~irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~--~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~   78 (334)
T 2czc_A            2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTK--PDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (334)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESS--CSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCC--HHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc
Confidence            689999996 99999999999999999999999863  222222221   00            0012356789999884


Q ss_pred             ccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                            ++|+|+++|.+..+.+++..++++|++|++..+
T Consensus        79 ------~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~sap  111 (334)
T 2czc_A           79 ------KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGG  111 (334)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTT
T ss_pred             ------CCCEEEECCCccccHHHHHHHHHcCCceEeecc
Confidence                  799999999889999999999999999887655

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=98.92  E-value=3.2e-09  Score=98.61  Aligned_cols=118  Identities=13%  Similarity=0.114  Sum_probs=94.9

Q ss_pred             CceEEEEcCCChHHHHHHHHH---Hhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAV---TKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i---~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      .-|++|.| .|.||+..++.+   ... +.+++||++ +...|+|++++.+.. +.++++++|++++++     ..+|++
T Consensus        22 ~~~~vi~~-~g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~-~~gipv~~d~~~al~-----~~~d~l   93 (350)
T 2g0t_A           22 GTPAAIVA-WGQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPV-RYDVPVVSSVEKAKE-----MGAEVL   93 (350)
T ss_dssp             TEEEEEEC-TTTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-C-CSCCBEESSHHHHHH-----TTCCEE
T ss_pred             CCCEEEEe-CCCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCC-CCCceeeCCHHHHHh-----cCCCEE
Confidence            45899998 699999888855   555 679999999 888999999998332 589999999999997     479998


Q ss_pred             EEcC------ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 025154          111 IDFT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (257)
Q Consensus       111 IDFT------~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~  161 (257)
                      |--+      .|+...+.+..|+++|++||+|-..+ ..+..+|.++|+++|+.++-
T Consensus        94 vig~a~~gg~l~~~~~~~I~~Al~~G~nVvsglh~~-l~~~pel~~~A~~~Gv~i~d  149 (350)
T 2g0t_A           94 IIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGTRIID  149 (350)
T ss_dssp             EECCCSCCHHHHHHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCCEEE
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHHcCCcEEeCChhh-hhCCHHHHHHHHHCCCEEEE
Confidence            8764      46788899999999999999988765 33446688899988776663

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=98.92  E-value=9.9e-10  Score=101.29  Aligned_cols=120  Identities=14%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC--------CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      ++||+|+| +|.||+.+++.+.+.+        +++|++++|+... + ...+     . ...+++|+++++       +
T Consensus         3 ~irvgIiG-~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~-~-~~~~-----~-~~~~~~d~~~ll-------~   66 (332)
T 2ejw_A            3 ALKIALLG-GGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR-K-PRAI-----P-QELLRAEPFDLL-------E   66 (332)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT-S-CCSS-----C-GGGEESSCCCCT-------T
T ss_pred             eeEEEEEc-CCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH-H-hhcc-----C-cccccCCHHHHh-------C
Confidence            58999999 5999999999998877        7899999996521 1 1101     0 123577888877       4


Q ss_pred             ccEEEEcCChH-hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154          107 RAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (257)
Q Consensus       107 ~DVvIDFT~p~-~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll  172 (257)
                      +|||++.|... .+.++++.|+++|+|||+.......++.++|.++|+++  .++|.++..-|+-++
T Consensus        67 iDvVve~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~--~~~~Ea~vg~giPii  131 (332)
T 2ejw_A           67 ADLVVEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPFAEEG--LIYHEASVMAGTPAL  131 (332)
T ss_dssp             CSEEEECCCCSHHHHHHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT--CEECGGGTTTTSSSH
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC--CeEEEEEcccCCHHH
Confidence            89999999654 56889999999999999854333346778899999986  888887777774333

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.91  E-value=1.3e-08  Score=82.73  Aligned_cols=113  Identities=16%  Similarity=0.108  Sum_probs=88.8

Q ss_pred             CceEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +.+|+|+|++   |+||..+++.+.+ .++++. .+++.  +   .+      -.|+++|.+++++.+      .+|++|
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~-~G~~v~-~Vnp~--~---~~------i~G~~~y~sl~~l~~------~vDlvv   82 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLE-HGYDVY-PVNPK--Y---EE------VLGRKCYPSVLDIPD------KIEVVD   82 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHH-TTCEEE-EECTT--C---SE------ETTEECBSSGGGCSS------CCSEEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHH-CCCEEE-EECCC--C---Ce------ECCeeccCCHHHcCC------CCCEEE
Confidence            4579999987   8999999998764 678733 34442  1   11      247889999999864      799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      -|+.++.+.+.++.|++.|++.++-++|+..   +++.++|+++|+. ++.|| ++|+..
T Consensus        83 i~vp~~~~~~vv~~~~~~gi~~i~~~~g~~~---~~l~~~a~~~Gi~-vvGpn-c~gv~~  137 (144)
T 2d59_A           83 LFVKPKLTMEYVEQAIKKGAKVVWFQYNTYN---REASKKADEAGLI-IVANR-CMMREH  137 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCSEEEECTTCCC---HHHHHHHHHTTCE-EEESC-CHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEECCCchH---HHHHHHHHHcCCE-EEcCC-chhhcc
Confidence            9999999999999999999999888888752   4688889999998 45677 778754

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=98.89  E-value=5e-09  Score=96.71  Aligned_cols=94  Identities=16%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC--------------CCCCCeeeecCHHHHHhc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--------------EQPLEIPVMSDLTMVLGS  100 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~--------------~~~~gv~v~~dl~~~l~~  100 (257)
                      |+||||+|+ |+||+.+++++.++++++|+++.|... +. ....+..              -...+++++++++++++ 
T Consensus         1 ~ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~-~~-~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~-   76 (340)
T 1b7g_O            1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSP-NY-EAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK-   76 (340)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSC-SH-HHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH-
T ss_pred             CeEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCCh-HH-HHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc-
Confidence            689999998 999999999999999999999998531 11 1111100              01234455556666654 


Q ss_pred             cccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus       101 ~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                           ++|+|+++|.+..+.+++..+++.|+++|.=+
T Consensus        77 -----~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~s  108 (340)
T 1b7g_O           77 -----TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG  108 (340)
T ss_dssp             -----HCSEEEECCSTTHHHHHHHHHHHTTCEEEECT
T ss_pred             -----CCCEEEECCCCchhHHHHHHHHHcCCeEEEeC
Confidence                 68999999999999999999999999988643

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.89  E-value=1.9e-08  Score=81.33  Aligned_cols=113  Identities=13%  Similarity=0.158  Sum_probs=86.2

Q ss_pred             CCceEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           34 SNIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      .+.+|+|+|++   |+||+.+++.+.+ .+++ +..+++.  ..   +      -.|+++|.+++++.+      .+|++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~-~G~~-V~~vnp~--~~---~------i~G~~~~~s~~el~~------~vDlv   73 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLS-KGFE-VLPVNPN--YD---E------IEGLKCYRSVRELPK------DVDVI   73 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHH-TTCE-EEEECTT--CS---E------ETTEECBSSGGGSCT------TCCEE
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHH-CCCE-EEEeCCC--CC---e------ECCeeecCCHHHhCC------CCCEE
Confidence            35689999965   9999999999864 5787 4445543  11   1      147889999998874      79999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      |-+..++.+.+.++.|++.|++.++--++..   .+++.++|+++|+.+ +.|| ++|+.
T Consensus        74 ii~vp~~~v~~v~~~~~~~g~~~i~~~~~~~---~~~l~~~a~~~Gi~~-igpn-c~g~~  128 (138)
T 1y81_A           74 VFVVPPKVGLQVAKEAVEAGFKKLWFQPGAE---SEEIRRFLEKAGVEY-SFGR-CIMVE  128 (138)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCEEEECTTSC---CHHHHHHHHHHTCEE-ECSC-CHHHH
T ss_pred             EEEeCHHHHHHHHHHHHHcCCCEEEEcCccH---HHHHHHHHHHCCCEE-EcCC-cceEE
Confidence            9999999999999999999998776655432   246788889989884 5777 77874

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=98.80  E-value=6e-09  Score=96.70  Aligned_cols=114  Identities=13%  Similarity=0.083  Sum_probs=95.8

Q ss_pred             eEEEEcCCChHHHHHHHHH---HhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAV---TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i---~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |++|.+ .|.+|+..+|.+   ...++.++||++|++..|+|++++.|.  +.++|++.|++++++     .++|++|.-
T Consensus         9 ~~vi~~-~g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~--~~gipi~~~l~~al~-----~~~d~lvig   80 (349)
T 2obn_A            9 RVAILL-HEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGI--YRYVPIVKSVEAALE-----YKPQVLVIG   80 (349)
T ss_dssp             CEEEEC-TTTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCC--CSCCCEESSHHHHGG-----GCCSEEEEC
T ss_pred             cEEEEe-CCCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCC--cCCCCccCCHHHHHh-----CCCCEEEEE
Confidence            688888 699998887776   667789999999988889999999996  689999999999997     489999887


Q ss_pred             C------ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          114 T------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       114 T------~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      +      .|+.+.+.+..|+++|++||.|--.+-. +..+|.++|++ |+.++
T Consensus        81 ~a~~gG~l~~~~~~~i~~Al~~G~~Vvsglh~~l~-~~pel~~~A~~-g~~i~  131 (349)
T 2obn_A           81 IAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPLA-NIPDLNALLQP-GQLIW  131 (349)
T ss_dssp             CCCCCC-SCGGGHHHHHHHHHTTCEEEECSSSCCT-TCHHHHHHCCT-TCCEE
T ss_pred             ecCCCCCCCHHHHHHHHHHHHcCCcEEeCccchhh-CCHHHHHHHHc-CCEEE
Confidence            5      4778899999999999999998764322 22458899998 88777

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=98.80  E-value=1.6e-08  Score=93.16  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC---------------CCCCeeeecCHHHHHh
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME---------------QPLEIPVMSDLTMVLG   99 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~---------------~~~gv~v~~dl~~~l~   99 (257)
                      |+||||+|+ |+||+.+++++.++++++|+++.|...  ......++..               ...++.+..++++++.
T Consensus         1 mikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~--~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~   77 (337)
T 1cf2_P            1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRP--DFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD   77 (337)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSC--SHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred             CeEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCCh--hHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc
Confidence            689999998 999999999999889999999988531  1111111100               0123444457777774


Q ss_pred             ccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                            ++|+|+++|.+..+.+++..++++|++||+-++.
T Consensus        78 ------~vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~  111 (337)
T 1cf2_P           78 ------EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (337)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS
T ss_pred             ------CCCEEEECCCchhhHHHHHHHHHcCCEEEEecCC
Confidence                  7999999999999999999999999998876665

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.80  E-value=2.2e-08  Score=81.09  Aligned_cols=115  Identities=12%  Similarity=0.079  Sum_probs=89.4

Q ss_pred             CceEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +-+|+|+|++   |+||..+++.+. ..+++ +..+++...+.   +      -.|+++|.+++++-+      .+|++|
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~-~~G~~-v~~vnp~~~~~---~------i~G~~~~~sl~el~~------~vDlav   75 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLR-EQGYR-VLPVNPRFQGE---E------LFGEEAVASLLDLKE------PVDILD   75 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHH-HTTCE-EEEECGGGTTS---E------ETTEECBSSGGGCCS------CCSEEE
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHH-HCCCE-EEEeCCCcccC---c------CCCEEecCCHHHCCC------CCCEEE
Confidence            4579999987   899999999876 46787 43455432121   1      137899999998764      799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      -|..++.+.+.++.|.+.|+..|+=.+|+..   +++.++|+++|+.++ .|| ++|+..
T Consensus        76 i~vp~~~~~~v~~~~~~~gi~~i~~~~g~~~---~~~~~~a~~~Gir~v-gpn-c~g~~~  130 (140)
T 1iuk_A           76 VFRPPSALMDHLPEVLALRPGLVWLQSGIRH---PEFEKALKEAGIPVV-ADR-CLMVEH  130 (140)
T ss_dssp             ECSCHHHHTTTHHHHHHHCCSCEEECTTCCC---HHHHHHHHHTTCCEE-ESC-CHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCCcCH---HHHHHHHHHcCCEEE-cCC-ccceEC
Confidence            9999999999999999999988887888753   468888999998755 577 788754

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=98.77  E-value=2.3e-08  Score=101.78  Aligned_cols=124  Identities=16%  Similarity=0.225  Sum_probs=96.1

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCc
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-----~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (257)
                      +...||.|.|++||   .+.+.+...     ++..+|+.+++...|.+...+.|. .+.|+++|.+++++.+.   ..++
T Consensus       494 ~~~trviV~G~tg~---~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~-~~~Gvp~y~sv~ea~~~---~p~~  566 (829)
T 3pff_A          494 SRHTKAIVWGMQTR---AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGH-KEILIPVFKNMADAMRK---HPEV  566 (829)
T ss_dssp             CTTCCEEEESCCHH---HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETT-EEEEEEEESSHHHHHHH---CTTC
T ss_pred             cCCCeEEEECCcHH---HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecC-CcCCcccCCcHHHHhhc---cCCC
Confidence            33479999999988   555555543     788999999986544333322343 25689999999998862   0148


Q ss_pred             cEEEEcCChHhHHHHHHHHHH-cCCCeEEe-CCCCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          108 AVVIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       108 DVvIDFT~p~~~~~~~~~a~~-~Gi~vViG-TTG~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                      |++|.|..+..+.+.++.|++ .|++.++. |.||.+.+.++|.++|++.|+ -++.||
T Consensus       567 DlaVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~~g~-rliGPN  624 (829)
T 3pff_A          567 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGV-TIIGPA  624 (829)
T ss_dssp             CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTC-EEECSS
T ss_pred             cEEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCC-EEEcCC
Confidence            999999999999999999999 99996655 779998888899999999987 566777

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.75  E-value=4.1e-09  Score=97.29  Aligned_cols=131  Identities=21%  Similarity=0.241  Sum_probs=88.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      +|||+|+|| |+||+.+++.+.++.++.+   .|..  .+.+..+........+-+  .+++.+++.      ++|+||.
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~~~~~v~~---~~~~--~~~~~~~~~~~~~~~~d~~d~~~l~~~~~------~~DvVi~   83 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLKDEFDVYI---GDVN--NENLEKVKEFATPLKVDASNFDKLVEVMK------EFELVIG   83 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTTSEEEE---EESC--HHHHHHHTTTSEEEECCTTCHHHHHHHHT------TCSEEEE
T ss_pred             ccEEEEECC-CHHHHHHHHHHhcCCCeEE---EEcC--HHHHHHHhccCCcEEEecCCHHHHHHHHh------CCCEEEE
Confidence            589999997 9999999998876544333   3321  111111111000001111  223445553      7899999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH-HH-HHHHHHHh
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS-IL-LQQAAISA  179 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv-nl-l~~~a~~l  179 (257)
                      ...|......++.|+++|+++|- +|. ..++..+|.+.|+++|+.++...-|.-|+ |+ +.++++.+
T Consensus        84 ~~p~~~~~~v~~~~~~~g~~yvD-~s~-~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~a~~~~~~~  150 (365)
T 3abi_A           84 ALPGFLGFKSIKAAIKSKVDMVD-VSF-MPENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQEL  150 (365)
T ss_dssp             CCCGGGHHHHHHHHHHHTCEEEE-CCC-CSSCGGGGHHHHHHTTCEEECCCBTTTBHHHHHHHHHHHHS
T ss_pred             ecCCcccchHHHHHHhcCcceEe-eec-cchhhhhhhhhhccCCceeeecCCCCCchHHHHHHHHHHhc
Confidence            99999999999999999999874 444 33455678999999999999999999998 33 45555554

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=98.71  E-value=4.2e-08  Score=89.51  Aligned_cols=99  Identities=20%  Similarity=0.243  Sum_probs=75.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEecCC-C-CcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHS-V-GEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~-~-g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DV  109 (257)
                      .++||+|+| +|.||+.+++.+.+ .+++++++++|+.. . ++...+      ..+++ .+++++++++.. ...++|+
T Consensus         3 ~~irVaIIG-~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~------~~g~~~~~~~~e~ll~~~-~~~~iDv   74 (312)
T 1nvm_B            3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ------RMGVTTTYAGVEGLIKLP-EFADIDF   74 (312)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH------HTTCCEESSHHHHHHHSG-GGGGEEE
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHH------HcCCCcccCCHHHHHhcc-CCCCCcE
Confidence            368999999 59999999999866 89999999999642 1 222221      34554 356788887510 0025899


Q ss_pred             EEEcCChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      |++.|.++.+.+++..|+++  |++|++.++-+
T Consensus        75 V~~atp~~~h~~~a~~al~a~~Gk~Vi~ekp~~  107 (312)
T 1nvm_B           75 VFDATSASAHVQNEALLRQAKPGIRLIDLTPAA  107 (312)
T ss_dssp             EEECSCHHHHHHHHHHHHHHCTTCEEEECSTTC
T ss_pred             EEECCChHHHHHHHHHHHHhCCCCEEEEcCccc
Confidence            99999999999999999999  99999988743

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.71  E-value=5.3e-08  Score=79.21  Aligned_cols=113  Identities=12%  Similarity=0.131  Sum_probs=84.2

Q ss_pred             CceEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +.+|+|+|++   |+||..+++.+.+ .+++ +..+++...|..         -.|+++|.+++++.+      .+|++|
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~-~G~~-v~~vnp~~~g~~---------i~G~~~~~sl~el~~------~~Dlvi   75 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLD-QGYH-VIPVSPKVAGKT---------LLGQQGYATLADVPE------KVDMVD   75 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHH-HTCC-EEEECSSSTTSE---------ETTEECCSSTTTCSS------CCSEEE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHH-CCCE-EEEeCCcccccc---------cCCeeccCCHHHcCC------CCCEEE
Confidence            4579999986   8999999998865 4677 445555432221         247889999998764      799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      -|+.++.+.+.+..|++.|+.-|+-.+|-.   .+++.++|+++|+.++ .|| ++|+
T Consensus        76 i~vp~~~v~~v~~~~~~~g~~~i~i~~~~~---~~~l~~~a~~~Gi~~i-gpn-c~g~  128 (145)
T 2duw_A           76 VFRNSEAAWGVAQEAIAIGAKTLWLQLGVI---NEQAAVLAREAGLSVV-MDR-CPAI  128 (145)
T ss_dssp             CCSCSTHHHHHHHHHHHHTCCEEECCTTCC---CHHHHHHHHTTTCEEE-CSC-CHHH
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCChH---HHHHHHHHHHcCCEEE-cCC-eeeE
Confidence            999999999999999999976554444422   2467888899888754 677 8887

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=98.66  E-value=9e-08  Score=76.13  Aligned_cols=111  Identities=14%  Similarity=0.171  Sum_probs=88.4

Q ss_pred             CceEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |-+|+|+||+   +|.|..+.+.+.+. ++++.. +.+..     +++      .|.+.|.+++++-      . +|+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~-g~~V~p-VnP~~-----~~i------~G~~~y~sl~dlp------~-vDlav   63 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSH-GHEFIP-VGRKK-----GEV------LGKTIINERPVIE------G-VDTVT   63 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHH-TCCEEE-ESSSC-----SEE------TTEECBCSCCCCT------T-CCEEE
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHC-CCeEEE-ECCCC-----CcC------CCeeccCChHHCC------C-CCEEE
Confidence            3459999997   78999999988754 677665 44431     222      4678898988764      4 99999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      -|+.|+.+.+.++.|.+.|+..|+=++|+..   +++.+.|+++|+.++  +| ++|+.+
T Consensus        64 i~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~---~e~~~~a~~~Girvv--~n-C~gv~l  117 (122)
T 3ff4_A           64 LYINPQNQLSEYNYILSLKPKRVIFNPGTEN---EELEEILSENGIEPV--IG-CTLVML  117 (122)
T ss_dssp             ECSCHHHHGGGHHHHHHHCCSEEEECTTCCC---HHHHHHHHHTTCEEE--ES-CHHHHH
T ss_pred             EEeCHHHHHHHHHHHHhcCCCEEEECCCCCh---HHHHHHHHHcCCeEE--CC-cCeEEe
Confidence            9999999999999999999999998899864   468888999999988  46 888854

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.60  E-value=1e-07  Score=89.43  Aligned_cols=147  Identities=11%  Similarity=0.097  Sum_probs=95.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCC-Ccch-hhhhcCCCCCCee-------eecCHHHHHhccccC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV-GEDI-GMVCDMEQPLEIP-------VMSDLTMVLGSISQS  104 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~-g~d~-g~~~g~~~~~gv~-------v~~dl~~~l~~~~~~  104 (257)
                      |+||+|+|| |.+|+.+++.+.+.++. ..+.++++... .+.. .++.... ...+.       -.+++++++++    
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~----   74 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINE----   74 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHH----
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHh----
Confidence            679999998 99999999999887765 44556665310 1111 1111000 00111       12356666652    


Q ss_pred             CCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCC--------HHHHHHHHHHhhhcCceEEEccCchHHHHH--HHH
Q 025154          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ--------LETVSALSAFCDKASMGCLIAPTLSIGSIL--LQQ  174 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s--------~e~~~~L~~~a~~~gipvl~spNfSlGvnl--l~~  174 (257)
                      .++|+||..+.|......+..|++.|+++|- ++++.        -.+...+.+.|+++|+.++..++|.-|+.-  ...
T Consensus        75 ~~~DvVin~ag~~~~~~v~~a~l~~g~~vvD-~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~~PG~~~l~a~~  153 (405)
T 4ina_A           75 VKPQIVLNIALPYQDLTIMEACLRTGVPYLD-TANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGFDPGVTNVFCAY  153 (405)
T ss_dssp             HCCSEEEECSCGGGHHHHHHHHHHHTCCEEE-SSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBTTTBHHHHHHHH
T ss_pred             hCCCEEEECCCcccChHHHHHHHHhCCCEEE-ecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCCCccHHHHHHHH
Confidence            2489999999998889999999999999885 54432        123356888899999999999999999852  333


Q ss_pred             HHHHhcCCCCCeEEEec
Q 025154          175 AAISASFHYKNVEIVES  191 (257)
Q Consensus       175 ~a~~l~~~~~DiEIiE~  191 (257)
                      +++..   +.+++.++.
T Consensus       154 ~~~~~---~~~i~~i~i  167 (405)
T 4ina_A          154 AQKHY---FDEIHEIDI  167 (405)
T ss_dssp             HHHHT---CSEEEEEEE
T ss_pred             HHHhc---cCcccEEEE
Confidence            34332   335555554

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=98.55  E-value=3e-07  Score=84.89  Aligned_cols=99  Identities=15%  Similarity=0.139  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCC-------CCCeeeec-CHHHHHhccccC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVMS-DLTMVLGSISQS  104 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~~~g~~~-------~~gv~v~~-dl~~~l~~~~~~  104 (257)
                      .|+||+|+||+|++|+.+++.+.++|+++|+++.+ ....|+...+..+...       ...+.+.+ ++++ ++     
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-----   76 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HK-----   76 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GT-----
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hc-----
Confidence            46899999999999999999999999999999884 3334554433221100       01222322 3333 33     


Q ss_pred             CCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                       ++|+|+..+....+.+.+..+++.|+++|.-+..
T Consensus        77 -~vDvVf~atp~~~s~~~a~~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           77 -DVDVVLSALPNELAESIELELVKNGKIVVSNASP  110 (350)
T ss_dssp             -TCSEEEECCCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             -CCCEEEECCChHHHHHHHHHHHHCCCEEEECCcc
Confidence             7999997777788899999999999998876654

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=98.53  E-value=5.8e-07  Score=82.93  Aligned_cols=100  Identities=19%  Similarity=0.150  Sum_probs=75.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhc-CCCCCCeeeec--CHHHHHhccccCCCcc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCD-MEQPLEIPVMS--DLTMVLGSISQSKARA  108 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g-~~~~~gv~v~~--dl~~~l~~~~~~~~~D  108 (257)
                      |+||+|+||+|.+|+.+++.+.++|+++|+++..+.   ..|+.+.++.. .....+..+.+  +.+++++      ++|
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~------~~D   77 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP------GVD   77 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT------TCS
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc------CCC
Confidence            799999999999999999999999999999998865   67777665421 10011344433  4555433      799


Q ss_pred             EEEEcCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       109 VvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      +|+..+......+.+..+++.|+.+|-=+.-|
T Consensus        78 vvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           78 VVFLATAHEVSHDLAPQFLEAGCVVFDLSGAF  109 (337)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCEEEEcCCcc
Confidence            99966666677899999999999988766655

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=98.50  E-value=4.3e-07  Score=83.84  Aligned_cols=98  Identities=12%  Similarity=0.042  Sum_probs=70.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~-~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |+||+|+||+|++|+.+++.+.++++++|+++.+....|+...+..+.-.. ..+.+ .++++ +.      ++|+|+..
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~~------~vDvV~~a   75 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-LE------PADILVLA   75 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-CC------CCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccc-cchhH-hc------CCCEEEEc
Confidence            689999999999999999999999999999988855455554432211000 12222 23443 32      79999988


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      +....+.+.+..+++.|+.+|.-+..|
T Consensus        76 ~g~~~s~~~a~~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           76 LPHGVFAREFDRYSALAPVLVDLSADF  102 (345)
T ss_dssp             CCTTHHHHTHHHHHTTCSEEEECSSTT
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEcCccc
Confidence            877888999999999999977655434

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=98.41  E-value=7.7e-07  Score=76.97  Aligned_cols=112  Identities=14%  Similarity=0.138  Sum_probs=77.7

Q ss_pred             CceEEEEcCCChHHHHHHHHH-HhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccE
Q 025154           35 NIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i-~~~~~~eLvg~vd~~--~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DV  109 (257)
                      .+||+|+|| |.+|+.+++.+ ... +++++|++|.+  ..|+.+         .++++  +++++++++    + ++|+
T Consensus        80 ~~rV~IIGa-G~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i---------~gv~V~~~~dl~ell~----~-~ID~  143 (211)
T 2dt5_A           80 KWGLCIVGM-GRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPV---------RGGVIEHVDLLPQRVP----G-RIEI  143 (211)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEE---------TTEEEEEGGGHHHHST----T-TCCE
T ss_pred             CCEEEEECc-cHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhh---------cCCeeecHHhHHHHHH----c-CCCE
Confidence            479999996 99999999863 234 89999999953  323222         23444  678888875    2 7999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEe-CC-CCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVY-VP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViG-TT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~  174 (257)
                      +|..++...+.+.+..|.+.|++.|+- |+ .++.+          +  .-++...+++.....|..
T Consensus       144 ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P~~l~vp----------~--~v~v~~vdl~~~l~~l~~  198 (211)
T 2dt5_A          144 ALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVP----------K--EVAVENVDFLAGLTRLSF  198 (211)
T ss_dssp             EEECSCHHHHHHHHHHHHHHTCCEEEECSSSCCCCC----------T--TSEEEECCSHHHHHHHHH
T ss_pred             EEEeCCchhHHHHHHHHHHcCCCEEEECCcccccCC----------C--CcEEEecCHHHHHHHHHH
Confidence            998887777789999999999996544 54 33322          1  135666677766544433

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=98.37  E-value=5.4e-07  Score=84.63  Aligned_cols=121  Identities=9%  Similarity=0.023  Sum_probs=77.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEE-ecCC---------CCc------c---hhhhhc-CCCCCCeee--
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAI-DSHS---------VGE------D---IGMVCD-MEQPLEIPV--   90 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~v-d~~~---------~g~------d---~g~~~g-~~~~~gv~v--   90 (257)
                      .|+||+|.|+||.+|+.+++.+.+.|+ ++++++. +++.         .+.      |   ..++.. . ...++.+  
T Consensus         3 ~m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l-~~~~~~v~~   81 (388)
T 1r0k_A            3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEAL-AGSSVEAAA   81 (388)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHT-TTCSSEEEE
T ss_pred             CceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHh-ccCCcEEEe
Confidence            368999999999999999999998887 9999873 3210         000      0   000000 0 0011222  


Q ss_pred             -ecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154           91 -MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus        91 -~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                       .+++.++++.    . +|+||+.+.-.........|+++|++|++.-=......-+.|.++|+++|+.++
T Consensus        82 g~~~~~el~~~----~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~li  147 (388)
T 1r0k_A           82 GADALVEAAMM----G-ADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLL  147 (388)
T ss_dssp             SHHHHHHHHTS----C-CSEEEECCCSGGGHHHHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEE
T ss_pred             CccHHHHHHcC----C-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEE
Confidence             2234455542    4 999999986677888899999999999985211122223567788888776664

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=98.37  E-value=7.1e-07  Score=82.82  Aligned_cols=97  Identities=12%  Similarity=0.115  Sum_probs=68.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-C--CCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-P--LEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~-~--~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ++||+|+||+|++|+.+++.+.++++++|+++.++...|+......+.-. .  ..+.+. + ++.++      ++|+|+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~------~vDvVf   87 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFS------TVDAVF   87 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGG------GCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhc------CCCEEE
Confidence            48999999999999999999999999999998886555554443221100 0  112222 2 33332      689999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      ..+....+.+.+..+ +.|+.+|.-+..|
T Consensus        88 ~atp~~~s~~~a~~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           88 CCLPHGTTQEIIKEL-PTALKIVDLSADF  115 (359)
T ss_dssp             ECCCTTTHHHHHHTS-CTTCEEEECSSTT
T ss_pred             EcCCchhHHHHHHHH-hCCCEEEECCccc
Confidence            888778889999999 9999877655544

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=98.37  E-value=1.7e-06  Score=79.79  Aligned_cols=98  Identities=16%  Similarity=0.097  Sum_probs=69.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCC-------CCCeeee-cCHHHHHhccccCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVM-SDLTMVLGSISQSK  105 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~~~g~~~-------~~gv~v~-~dl~~~l~~~~~~~  105 (257)
                      |+||+|+||+|++|+.+++.+.++++++|+++.+ +...|+...+..+...       ...+.+. .+++++++     .
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~   82 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-----E   82 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-----T
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-----C
Confidence            4899999999999999999998899999999885 3344555543322100       0011221 24445432     2


Q ss_pred             CccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      ++|+|+..+....+.+.+..+++.|+.||.-.
T Consensus        83 ~~DvV~~atp~~~~~~~a~~~~~aG~~VId~s  114 (354)
T 1ys4_A           83 DVDIVFSALPSDLAKKFEPEFAKEGKLIFSNA  114 (354)
T ss_dssp             TCCEEEECCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CCCEEEECCCchHHHHHHHHHHHCCCEEEECC
Confidence            69999988888888999999999999966543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.36  E-value=1.3e-06  Score=75.77  Aligned_cols=90  Identities=21%  Similarity=0.336  Sum_probs=61.3

Q ss_pred             CceEEEEcCCChHHHHHHHH-HHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIA-VTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~-i~~~~~~eLvg~vd~~--~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      .+||+|+|| |++|+.+++. ....++++++|++|.+  ..|+.+.       ..++..++++++++++     . |++|
T Consensus        85 ~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~-------gv~V~~~~dl~eli~~-----~-D~Vi  150 (215)
T 2vt3_A           85 MTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVG-------GVPVYNLDDLEQHVKD-----E-SVAI  150 (215)
T ss_dssp             --CEEEECC-SHHHHHHHHCC------CCEEEEEESCTTTTTCEET-------TEEEEEGGGHHHHCSS-----C-CEEE
T ss_pred             CCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhc-------CCeeechhhHHHHHHh-----C-CEEE
Confidence            468999996 9999999994 3456789999999953  3333221       1223336788888863     4 9988


Q ss_pred             EcCChHhHHHHHHHHHHcCCC-eEEeCC
Q 025154          112 DFTDASTVYDNVKQATAFGMR-SVVYVP  138 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~-vViGTT  138 (257)
                      ..++...+.+.+..|.+.|++ ++.-++
T Consensus       151 IAvPs~~~~ei~~~l~~aGi~~Ilnf~P  178 (215)
T 2vt3_A          151 LTVPAVAAQSITDRLVALGIKGILNFTP  178 (215)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EecCchhHHHHHHHHHHcCCCEEEEcCc
Confidence            777777778999999999999 445454

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=98.34  E-value=7e-07  Score=82.36  Aligned_cols=99  Identities=17%  Similarity=0.231  Sum_probs=67.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhhh------cC----------CCC-----CCeeeec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVC------DM----------EQP-----LEIPVMS   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~g~~~------g~----------~~~-----~gv~v~~   92 (257)
                      |+||||+|+ |++|+.+++++.++|+++|+++.|+ ... ..++.++      |.          +..     ..+.++.
T Consensus         3 ~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~-~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~   80 (337)
T 3e5r_O            3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITT-DYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFG   80 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCH-HHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEEC
T ss_pred             ceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCH-HHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEe
Confidence            379999997 9999999999999999999999884 110 0001111      10          000     0123343


Q ss_pred             --CHHHH-HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEeCCC
Q 025154           93 --DLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (257)
Q Consensus        93 --dl~~~-l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViGTTG  139 (257)
                        |++++ ..+    .++|+|+++|....+.+.+..+++.|+. +||-.++
T Consensus        81 ~~dp~~l~w~~----~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa  127 (337)
T 3e5r_O           81 IRNPDEIPWAE----AGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS  127 (337)
T ss_dssp             CSCGGGCCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             cCChHHccccc----cCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCC
Confidence              66665 111    2799999999999999999999999985 6666553

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.31  E-value=3.4e-06  Score=75.52  Aligned_cols=137  Identities=17%  Similarity=0.096  Sum_probs=74.6

Q ss_pred             cccccccccCcccccc--CCCCC-CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee
Q 025154           13 HHISQNVKAKRFISCS--TNPPQ-SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP   89 (257)
Q Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~-~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~   89 (257)
                      ||-|+.+.-+-..-+-  +.|.. .++||+|+|+ |.||+.+++.+.. .++++ .++|+..  .....+.    ..|+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~-G~mG~~~a~~l~~-~g~~V-~~~~~~~--~~~~~~~----~~g~~   75 (316)
T 2uyy_A            5 HHHSSGVDLGTENLYFQSMGSITPTDKKIGFLGL-GLMGSGIVSNLLK-MGHTV-TVWNRTA--EKCDLFI----QEGAR   75 (316)
T ss_dssp             --------------------CCCCCSSCEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSSG--GGGHHHH----HTTCE
T ss_pred             cccccccCccccceeecCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHh-CCCEE-EEEeCCH--HHHHHHH----HcCCE
Confidence            5556665554443333  33332 2489999995 9999999998875 46775 4566531  1222222    23566


Q ss_pred             eecCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 025154           90 VMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (257)
Q Consensus        90 v~~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~------a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~s  162 (257)
                      +++++++++.      ++|+||..+. |....+.+..      .+..|..+|..++ .+.+..+.|.+...+.++.++-+
T Consensus        76 ~~~~~~~~~~------~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~-~~~~~~~~l~~~~~~~~~~~v~~  148 (316)
T 2uyy_A           76 LGRTPAEVVS------TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMST-VDADTVTELAQVIVSRGGRFLEA  148 (316)
T ss_dssp             ECSCHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             EcCCHHHHHh------cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEc
Confidence            7788888875      6899997776 5655555442      2334555554444 45555666776665556666655


Q ss_pred             cCc
Q 025154          163 PTL  165 (257)
Q Consensus       163 pNf  165 (257)
                      |.+
T Consensus       149 p~~  151 (316)
T 2uyy_A          149 PVS  151 (316)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            544

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.30  E-value=1.2e-06  Score=76.56  Aligned_cols=97  Identities=14%  Similarity=0.133  Sum_probs=69.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +|||+|+|+ |+||+.+++.+... +++++.++|+..  ..+..+.   ...++.++++++++++      ++|+||.++
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~-g~~~v~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~~------~~Dvvi~av   76 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRK-GFRIVQVYSRTE--ESARELA---QKVEAEYTTDLAEVNP------YAKLYIVSL   76 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSH--HHHHHHH---HHTTCEEESCGGGSCS------CCSEEEECC
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHC-CCeEEEEEeCCH--HHHHHHH---HHcCCceeCCHHHHhc------CCCEEEEec
Confidence            479999995 99999999988754 678788888531  1122222   1246777888888774      799999999


Q ss_pred             ChHhHHHHHHHHHH---cCCCeEEeCCCCCHHH
Q 025154          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLET  144 (257)
Q Consensus       115 ~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~  144 (257)
                      .+..+.+.+....+   .+..+|..++|++.+.
T Consensus        77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH
Confidence            88877666665544   4666777777887544

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.28  E-value=1.1e-05  Score=60.71  Aligned_cols=105  Identities=15%  Similarity=0.171  Sum_probs=69.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----e---cCHHHHHhccccCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~---~dl~~~l~~~~~~~~  106 (257)
                      .++||+|+|+ |.||+.+++.+......+++ ++++..  .....+.    ..++..    .   +++++++      .+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~-~~~r~~--~~~~~~~----~~~~~~~~~d~~~~~~~~~~~------~~   69 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVT-VADHDL--AALAVLN----RMGVATKQVDAKDEAGLAKAL------GG   69 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEE-EEESCH--HHHHHHH----TTTCEEEECCTTCHHHHHHHT------TT
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEE-EEeCCH--HHHHHHH----hCCCcEEEecCCCHHHHHHHH------cC
Confidence            3579999998 99999999988865437765 455431  1112221    112211    1   2334444      37


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~  154 (257)
                      +|+||+++.+......+..|.+.|++.+.-++  +.+..+.+.+++++
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~  115 (118)
T 3ic5_A           70 FDAVISAAPFFLTPIIAKAAKAAGAHYFDLTE--DVAATNAVRALVED  115 (118)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEECCCS--CHHHHHHHHHHHHC
T ss_pred             CCEEEECCCchhhHHHHHHHHHhCCCEEEecC--cHHHHHHHHHHHHh
Confidence            99999999888889999999999999886333  23445666666655

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=98.26  E-value=2.4e-06  Score=82.18  Aligned_cols=140  Identities=11%  Similarity=0.133  Sum_probs=90.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEE--EEecCCCCcchhhhhcCCCCCCeeee-cCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAG--AIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg--~vd~~~~g~d~g~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ++||.|+|+ |.||+.+++.+.+++++.++.  ++|+...+.++.+..|.. ...+.+. +|.+++++.+.+  +.|+||
T Consensus        13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~-~~~~~Vdadnv~~~l~aLl~--~~DvVI   88 (480)
T 2ph5_A           13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVS-FKLQQITPQNYLEVIGSTLE--ENDFLI   88 (480)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCE-EEECCCCTTTHHHHTGGGCC--TTCEEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCc-eeEEeccchhHHHHHHHHhc--CCCEEE
Confidence            468999995 999999999999988874222  346554456655544431 1223333 344444433222  249999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCC--CC---H------------HHHHHHHHHh-hhcCceEEEccCchHHHH--H
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPH--IQ---L------------ETVSALSAFC-DKASMGCLIAPTLSIGSI--L  171 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG--~s---~------------e~~~~L~~~a-~~~gipvl~spNfSlGvn--l  171 (257)
                      +.+.|....+.+++|++.|++.+- |+.  |+   .            +..+.+++.+ +++| ..+...-|.-|+.  +
T Consensus        89 N~s~~~~~l~Im~acleaGv~YlD-Ta~E~~~p~~~~~~~~p~~~~~Y~~~~~~~~~~~~~~G-tAilg~G~nPGvvsvf  166 (480)
T 2ph5_A           89 DVSIGISSLALIILCNQKGALYIN-AATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQK-TALITHGANPGLVSHF  166 (480)
T ss_dssp             ECCSSSCHHHHHHHHHHHTCEEEE-SSCCCCCC----------CCCHHHHHHHHHTTTTTCCS-CEECSCBTTTBHHHHH
T ss_pred             ECCccccCHHHHHHHHHcCCCEEE-CCCCcccccccccccCcchhhhHHHHHHHHHHHHhcCC-cEEecCCCCccHHHHH
Confidence            999999999999999999999885 432  11   1            2223466665 4467 6777888888885  2


Q ss_pred             HHHHHHHhc
Q 025154          172 LQQAAISAS  180 (257)
Q Consensus       172 l~~~a~~l~  180 (257)
                      +.++++.++
T Consensus       167 ~~~Al~~la  175 (480)
T 2ph5_A          167 IKEALLNIA  175 (480)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhHh
Confidence            444444443

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=98.26  E-value=8.6e-07  Score=81.91  Aligned_cols=96  Identities=21%  Similarity=0.221  Sum_probs=65.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcc--hhhhhcCCCCCCeeeecCHHHHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGED--IGMVCDMEQPLEIPVMSDLTMVL   98 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d--~g~~~g~~~~~gv~v~~dl~~~l   98 (257)
                      |+||||+|+ |++|+.+++++.++++++|+++.|...              .|+.  .+.+... ...++.+..+.++++
T Consensus         2 mikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~-~~~~l~v~~~~~~~~   79 (343)
T 2yyy_A            2 PAKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLF-EDAGIPVEGTILDII   79 (343)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHH-HHTTCCCCCBGGGTG
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecc-cCCeEEECCchHHhc
Confidence            689999997 999999999998889999999988420              0110  0111000 011333444555555


Q ss_pred             hccccCCCccEEEEcCChHhHHHHHH-HHHHcCCCeEEeCC
Q 025154           99 GSISQSKARAVVIDFTDASTVYDNVK-QATAFGMRSVVYVP  138 (257)
Q Consensus        99 ~~~~~~~~~DVvIDFT~p~~~~~~~~-~a~~~Gi~vViGTT  138 (257)
                      .      ++|+|++.|....+.+.+. .+++.|++||+..+
T Consensus        80 ~------~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap  114 (343)
T 2yyy_A           80 E------DADIVVDGAPKKIGKQNLENIYKPHKVKAILQGG  114 (343)
T ss_dssp             G------GCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTT
T ss_pred             c------CCCEEEECCCccccHHHHHHHHHHCCCEEEECCC
Confidence            3      6999998877677788885 89999998776443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.23  E-value=2.3e-06  Score=74.44  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +||||+|+| +|.||+.+++.+... +.+ |.++|+..  .....+.   ...|+.++++++++++      ++|+||..
T Consensus         2 ~~m~i~iiG-~G~mG~~~a~~l~~~-g~~-v~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~~------~~D~Vi~~   67 (259)
T 2ahr_A            2 NAMKIGIIG-VGKMASAIIKGLKQT-PHE-LIISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILG   67 (259)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHTTS-SCE-EEEECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEEC
T ss_pred             CccEEEEEC-CCHHHHHHHHHHHhC-CCe-EEEECCCH--HHHHHHH---HHcCCEeeCCHHHHHh------cCCEEEEE
Confidence            368999999 599999999988754 444 56777531  1122222   1235667889999885      79999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeC-CCCCHHHHHH
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSA  147 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGT-TG~s~e~~~~  147 (257)
                      +.|..+.+.+... +.|. +|+-+ .|.+.+++++
T Consensus        68 v~~~~~~~v~~~l-~~~~-~vv~~~~~~~~~~l~~  100 (259)
T 2ahr_A           68 IKPQLFETVLKPL-HFKQ-PIISMAAGISLQRLAT  100 (259)
T ss_dssp             SCGGGHHHHHTTS-CCCS-CEEECCTTCCHHHHHH
T ss_pred             eCcHhHHHHHHHh-ccCC-EEEEeCCCCCHHHHHH
Confidence            8888777766543 4666 45555 5888765443

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=98.22  E-value=3.4e-06  Score=80.55  Aligned_cols=111  Identities=14%  Similarity=0.151  Sum_probs=84.7

Q ss_pred             CceEEEEcCCC---hHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVK---EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~G---rMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +-+|+|+|+++   ++|..+.+.+.+.. -..+..+++.  +.   +      -.|+++|.+++++.+      .+|++|
T Consensus         8 p~siAVvGas~~~~~~g~~v~~~l~~~g-~~~v~pVnP~--~~---~------i~G~~~y~sl~~lp~------~~Dlav   69 (457)
T 2csu_A            8 PKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIK--EE---E------VQGVKAYKSVKDIPD------EIDLAI   69 (457)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSS--CS---E------ETTEECBSSTTSCSS------CCSEEE
T ss_pred             CCeEEEECcCCCCCchHHHHHHHHHHcC-CCEEEEECCC--CC---e------ECCEeccCCHHHcCC------CCCEEE
Confidence            45799999974   78999999887654 3445556653  21   1      247899999998864      799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEE-eCCCCCH--H----HHHHHHHHhhhcCceEEEccC
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVV-YVPHIQL--E----TVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vVi-GTTG~s~--e----~~~~L~~~a~~~gipvl~spN  164 (257)
                      -|+.|+.+.+.++.|.+.|++.|+ =|.||.+  +    ..+++.++|+++|+.++ .||
T Consensus        70 i~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~vi-GPn  128 (457)
T 2csu_A           70 IVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII-GPN  128 (457)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE-CSS
T ss_pred             EecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEE-cCC
Confidence            999999999999999999999654 4558853  1    25678899999898765 455

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=98.21  E-value=3.6e-06  Score=77.36  Aligned_cols=92  Identities=12%  Similarity=0.053  Sum_probs=66.7

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHH-HHhccccCCCccEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAVV  110 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~-~l~~~~~~~~~DVv  110 (257)
                      .|+||+|+||+|+.|+.+++.+.++  |+++|+++.++...|+... +.+    ..+.+. +++. .+      .++|+|
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-~~~----~~i~~~-~~~~~~~------~~vDvV   69 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-FNG----KTVRVQ-NVEEFDW------SQVHIA   69 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-ETT----EEEEEE-EGGGCCG------GGCSEE
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-ecC----ceeEEe-cCChHHh------cCCCEE
Confidence            3799999999999999999999888  8999999887544454332 111    123332 2221 22      268999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      ++.+....+.+.+..+++.|+.+|.-+
T Consensus        70 f~a~g~~~s~~~a~~~~~~G~~vId~s   96 (336)
T 2r00_A           70 LFSAGGELSAKWAPIAAEAGVVVIDNT   96 (336)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred             EECCCchHHHHHHHHHHHcCCEEEEcC
Confidence            988888888999999999999766544

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.17  E-value=8.2e-06  Score=71.92  Aligned_cols=112  Identities=13%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ||||+|+|+ |.||+.+++.+.. .++++. ++| ..  ..+..+.    ..|+.+++++++++.      ++|+||-.+
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~-~g~~V~-~~~-~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~v   66 (295)
T 1yb4_A            3 AMKLGFIGL-GIMGSPMAINLAR-AGHQLH-VTT-IG--PVADELL----SLGAVNVETARQVTE------FADIIFIMV   66 (295)
T ss_dssp             -CEEEECCC-STTHHHHHHHHHH-TTCEEE-ECC-SS--CCCHHHH----TTTCBCCSSHHHHHH------TCSEEEECC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHh-CCCEEE-EEc-CH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEEC
Confidence            579999995 9999999998875 477875 455 31  2222332    236677889998885      799999777


Q ss_pred             ChHh-HHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          115 DAST-VYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       115 ~p~~-~~~~~~------~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      .... ....+.      ..+..|..+|.-+++ +....++|.+..++.++.++-+|
T Consensus        67 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~g~~~~~~p  121 (295)
T 1yb4_A           67 PDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRVNEMGADYLDAP  121 (295)
T ss_dssp             SSHHHHHHHHHSTTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCHHHHHHHHhCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHcCCeEEEcc
Confidence            4444 333333      123445656655555 44455667776666566655444

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.16  E-value=2.4e-06  Score=73.17  Aligned_cols=127  Identities=19%  Similarity=0.038  Sum_probs=74.2

Q ss_pred             cccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCC
Q 025154           26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (257)
Q Consensus        26 ~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (257)
                      +|.+....+||||+|+| +|.||+.+++.+.+ .+++++.++++..  ..+..+.   ...++..+.+..+.++      
T Consensus        14 ~~~~~~~m~mmkI~IIG-~G~mG~~la~~l~~-~g~~V~~v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------   80 (220)
T 4huj_A           14 GTENLYFQSMTTYAIIG-AGAIGSALAERFTA-AQIPAIIANSRGP--ASLSSVT---DRFGASVKAVELKDAL------   80 (220)
T ss_dssp             ---CTTGGGSCCEEEEE-CHHHHHHHHHHHHH-TTCCEEEECTTCG--GGGHHHH---HHHTTTEEECCHHHHT------
T ss_pred             cccchhhhcCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEECCCH--HHHHHHH---HHhCCCcccChHHHHh------
Confidence            34444445578999999 59999999998875 4788877677531  1122222   1224444444444553      


Q ss_pred             CccEEEEcCChHhHHHHHHHHHH-cCCCeEEeCCCCC-----HH------HHHHHHHHhhhcCceEEEc-cCchH
Q 025154          106 ARAVVIDFTDASTVYDNVKQATA-FGMRSVVYVPHIQ-----LE------TVSALSAFCDKASMGCLIA-PTLSI  167 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~-~Gi~vViGTTG~s-----~e------~~~~L~~~a~~~gipvl~s-pNfSl  167 (257)
                      .+|+||-.+.|..+.+.+..... .+..+|.-+.|+.     .+      ..+.|++....  .+++.+ ||+..
T Consensus        81 ~aDvVilavp~~~~~~v~~~l~~~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~  153 (220)
T 4huj_A           81 QADVVILAVPYDSIADIVTQVSDWGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AKVVKAFNTLPA  153 (220)
T ss_dssp             TSSEEEEESCGGGHHHHHTTCSCCTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CEEEEESCSSCH
T ss_pred             cCCEEEEeCChHHHHHHHHHhhccCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CCEEECCCCCCH
Confidence            79999988888877777654321 2444454454662     11      34556666543  566655 44443

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=98.15  E-value=5.8e-06  Score=71.63  Aligned_cols=91  Identities=21%  Similarity=0.234  Sum_probs=68.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHH-HhcCCcEEEEEEecC---CCCc-chhhhhcCCCCCCeeee--cCHHHHHhccccCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSH---SVGE-DIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i-~~~~~~eLvg~vd~~---~~g~-d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~  106 (257)
                      .+.||+|+|| |.+|+++++.+ ....+++++|++|.+   ..|+ .+         .|++|+  +++++++++    .+
T Consensus        83 ~~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i---------~GvpV~~~~dL~~~v~~----~~  148 (212)
T 3keo_A           83 STTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE---------DGIPVYGISTINDHLID----SD  148 (212)
T ss_dssp             SCEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT---------TCCBEEEGGGHHHHC-C----CS
T ss_pred             CCCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE---------CCeEEeCHHHHHHHHHH----cC
Confidence            4579999997 99999999874 245789999999953   3333 21         256664  577777764    68


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      +|++|..++.....+.+..+.+.|++-+.--|
T Consensus       149 Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFa  180 (212)
T 3keo_A          149 IETAILTVPSTEAQEVADILVKAGIKGILSFS  180 (212)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHHTCCEEEECS
T ss_pred             CCEEEEecCchhHHHHHHHHHHcCCCEEEEcC
Confidence            99999777777778899999999999886543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.14  E-value=1.7e-05  Score=70.10  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=73.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .+|||+|+|+ |.||+.+++.+.. .+++++ ++|+.  ......+.    ..|+.+++++++++.      ++|+||..
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~-~g~~V~-~~~~~--~~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~   67 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLK-EGVTVY-AFDLM--EANVAAVV----AQGAQACENNQKVAA------ASDIIFTS   67 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHH-TTCEEE-EECSS--HHHHHHHH----TTTCEECSSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHH-CCCeEE-EEeCC--HHHHHHHH----HCCCeecCCHHHHHh------CCCEEEEE
Confidence            3589999995 9999999998875 477865 56653  11122222    236777889998885      68999977


Q ss_pred             CC-hHhHHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          114 TD-ASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       114 T~-p~~~~~~~~------~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                      +. |......+.      ..++.|..+|.-++|. .+..+.|.+..++.++.++-+|-
T Consensus        68 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~-~~~~~~l~~~~~~~g~~~~~~p~  124 (301)
T 3cky_A           68 LPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVS-PSSTLKMAKVAAEKGIDYVDAPV  124 (301)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEEccC
Confidence            74 443444332      2345577666666665 33455676666655666665543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.14  E-value=2.4e-05  Score=70.65  Aligned_cols=118  Identities=12%  Similarity=0.115  Sum_probs=76.9

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ...++||+|+|+ |.||+.+++.+.. .++++. ++|+..  ..+..+.    ..|+..+++++++++      ++|+||
T Consensus        28 ~~~~~~I~iIG~-G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~e~~~------~aDvVi   92 (320)
T 4dll_A           28 DPYARKITFLGT-GSMGLPMARRLCE-AGYALQ-VWNRTP--ARAASLA----ALGATIHEQARAAAR------DADIVV   92 (320)
T ss_dssp             -CCCSEEEEECC-TTTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----TTTCEEESSHHHHHT------TCSEEE
T ss_pred             ccCCCEEEEECc-cHHHHHHHHHHHh-CCCeEE-EEcCCH--HHHHHHH----HCCCEeeCCHHHHHh------cCCEEE
Confidence            345689999995 9999999998874 578765 466531  1222332    347788899999985      799988


Q ss_pred             EcCC-hHhHHHHHH-----HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          112 DFTD-ASTVYDNVK-----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       112 DFT~-p~~~~~~~~-----~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      -... +..+.+.+.     ..+..|.-+| -++..+.+..+++.+..++.|+.++-+|-+
T Consensus        93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi-~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  151 (320)
T 4dll_A           93 SMLENGAVVQDVLFAQGVAAAMKPGSLFL-DMASITPREARDHAARLGALGIAHLDTPVS  151 (320)
T ss_dssp             ECCSSHHHHHHHHTTTCHHHHCCTTCEEE-ECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             EECCCHHHHHHHHcchhHHhhCCCCCEEE-ecCCCCHHHHHHHHHHHHHcCCEEEeCCCc
Confidence            7765 334444332     1234455444 444455666677777777777777766644

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.13  E-value=3.1e-05  Score=68.52  Aligned_cols=112  Identities=15%  Similarity=0.109  Sum_probs=75.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+|+| +|.||+.+++.+.. .+++++ ++|+..  ..+..+.    ..++..+++++++++      ++|+||-...
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVK-AGCSVT-IWNRSP--EKAEELA----ALGAERAATPCEVVE------SCPVTFAMLA   66 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEe-ecHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEEcC
Confidence            6999999 59999999998875 578876 567531  1222332    346778899999986      6899987765


Q ss_pred             -hHhHHHHH------HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          116 -ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       116 -p~~~~~~~------~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                       |..+.+.+      ..+++.|.. |+-+++.+.+..+++.+..++.|+..+-+|
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~-vi~~st~~~~~~~~~~~~~~~~g~~~~~~p  120 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRG-YVDMSTVDPATSQRIGVAVVAKGGRFLEAP  120 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCE-EEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCE-EEeCCCCCHHHHHHHHHHHHHhCCEEEECC
Confidence             44555444      233445554 445566667777777777777677665544

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=98.12  E-value=3.8e-06  Score=77.28  Aligned_cols=96  Identities=19%  Similarity=0.227  Sum_probs=64.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec-CCCCcc---------hhhhhcCC---------CCCCeeee--cC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGED---------IGMVCDME---------QPLEIPVM--SD   93 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d---------~g~~~g~~---------~~~gv~v~--~d   93 (257)
                      |+||||+|+ |++|+.+++++.++++++|+++.|+ ...+.-         -+.+.+..         ....+.++  .|
T Consensus         3 ~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d   81 (335)
T 1u8f_O            3 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD   81 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             ceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCC
Confidence            479999996 9999999999999999999999884 211100         00010000         00012333  36


Q ss_pred             HHHH-HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154           94 LTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus        94 l~~~-l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      ++++ ..+    .++|+|++.|....+.+.+..+++.|..+|+
T Consensus        82 ~~~l~~~~----~~vDvV~eatg~~~~~e~a~~~l~aGak~V~  120 (335)
T 1u8f_O           82 PSKIKWGD----AGAEYVVESTGVFTTMEKAGAHLQGGAKRVI  120 (335)
T ss_dssp             GGGCCTTT----TTCCEEEECSSSCCSHHHHGGGGGGTCSEEE
T ss_pred             HHHCcccc----CCCCEEEECCCchhhHHHHHHHHhCCCeEEE
Confidence            6665 211    3799999999888889999999999955554

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.11  E-value=3e-05  Score=69.70  Aligned_cols=117  Identities=13%  Similarity=0.126  Sum_probs=75.8

Q ss_pred             CCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      +...|+||+|+| +|.||+.+++.+.. .++++. ++|+..  ..+..+.    ..|+..+++++++++      .+|+|
T Consensus        17 ~~~~m~~I~iIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~~~~~------~aDvv   81 (310)
T 3doj_A           17 RGSHMMEVGFLG-LGIMGKAMSMNLLK-NGFKVT-VWNRTL--SKCDELV----EHGASVCESPAEVIK------KCKYT   81 (310)
T ss_dssp             -CCCSCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEE
T ss_pred             ccccCCEEEEEC-ccHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCeEcCCHHHHHH------hCCEE
Confidence            345589999999 59999999998875 577765 467531  1222332    346778889999886      68998


Q ss_pred             EEcCC-hHhHHHHH---H---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          111 IDFTD-ASTVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       111 IDFT~-p~~~~~~~---~---~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      |-... |..+.+.+   .   ..+..|. +|+-+++.+.+..+++.+..++.|+.++-+|
T Consensus        82 i~~vp~~~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~~~~~~~~~~~~~~g~~~v~~p  140 (310)
T 3doj_A           82 IAMLSDPCAALSVVFDKGGVLEQICEGK-GYIDMSTVDAETSLKINEAITGKGGRFVEGP  140 (310)
T ss_dssp             EECCSSHHHHHHHHHSTTCGGGGCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             EEEcCCHHHHHHHHhCchhhhhccCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            87663 44444444   2   1233444 4555556667777777777776676655444

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.10  E-value=1.6e-05  Score=73.51  Aligned_cols=125  Identities=13%  Similarity=0.156  Sum_probs=76.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCCCCCCeeeecCHHHHHhcccc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DMEQPLEIPVMSDLTMVLGSISQ  103 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~----------g~~~~~gv~v~~dl~~~l~~~~~  103 (257)
                      .+|||+|+|+ |.||..++..+.+ .+.++. ++++..  ..+..+.          +..-+.++.+++|++++++    
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~-~G~~V~-l~~r~~--~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~----   98 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLAR-KGQKVR-LWSYES--DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLE----   98 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHT-TTCCEE-EECSCH--HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHT----
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHh----
Confidence            3689999995 9999999998874 466654 455420  1111111          1100123567889988885    


Q ss_pred             CCCccEEEEcCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHH---HHHHHHHhhhcCceEEEccCchHHH
Q 025154          104 SKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLET---VSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       104 ~~~~DVvIDFT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~---~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                        ++|+||-...+....+.+....   ..+..+|.-+.|+..+.   .+.+++......+.++..|||.--+
T Consensus        99 --~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev  168 (356)
T 3k96_A           99 --GVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEV  168 (356)
T ss_dssp             --TCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHH
T ss_pred             --cCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHH
Confidence              7999996666655555554433   34566777777887642   1234443323346788999998654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.08  E-value=1.7e-05  Score=69.54  Aligned_cols=113  Identities=13%  Similarity=-0.008  Sum_probs=69.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |+||+|+|+ |.||+.+++.+..  ++++. ++|+..  .....+.    ..|+.+++ +++++.      ++|+||..+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~--g~~V~-~~~~~~--~~~~~~~----~~g~~~~~-~~~~~~------~~D~vi~~v   63 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR--RFPTL-VWNRTF--EKALRHQ----EEFGSEAV-PLERVA------EARVIFTCL   63 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT--TSCEE-EECSST--HHHHHHH----HHHCCEEC-CGGGGG------GCSEEEECC
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC--CCeEE-EEeCCH--HHHHHHH----HCCCcccC-HHHHHh------CCCEEEEeC
Confidence            579999995 9999999998875  78854 566531  1122222    11344444 666664      699999887


Q ss_pred             ChHh-HHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          115 DAST-VYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       115 ~p~~-~~~~~~~a---~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      .+.. ....+...   ++.|..+|.-++ ......+.|.+..++.++.++-+|++
T Consensus        64 ~~~~~~~~v~~~l~~~l~~~~~vv~~s~-~~~~~~~~l~~~~~~~g~~~~~~p~~  117 (289)
T 2cvz_A           64 PTTREVYEVAEALYPYLREGTYWVDATS-GEPEASRRLAERLREKGVTYLDAPVS  117 (289)
T ss_dssp             SSHHHHHHHHHHHTTTCCTTEEEEECSC-CCHHHHHHHHHHHHTTTEEEEECCEE
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            6454 44444332   234554554333 44455567777777667777777754

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=98.07  E-value=9.9e-06  Score=75.01  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=67.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-----CcEEEEEEecCCCCcchhhhhcCCCC-CCeeeec-CHHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-----GMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS-DLTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-----~~eLvg~vd~~~~g~d~g~~~g~~~~-~gv~v~~-dl~~~l~~~~~~~~~  107 (257)
                      ||||+|+||+|++|+.+++.+.+++     .++++.+.++...|+....+.+.-.. ..+.+.+ +.++ +.      ++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~-~~------~~   81 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAV-LG------GH   81 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHH-HT------TC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHH-hc------CC
Confidence            6899999999999999999999888     89999987755445544432110000 1222221 3333 42      68


Q ss_pred             cEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       108 DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      |+|+..+....+.+.+..+ +.|+.+|.=++-|
T Consensus        82 DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~  113 (352)
T 2nqt_A           82 DAVFLALPHGHSAVLAQQL-SPETLIIDCGADF  113 (352)
T ss_dssp             SEEEECCTTSCCHHHHHHS-CTTSEEEECSSTT
T ss_pred             CEEEECCCCcchHHHHHHH-hCCCEEEEECCCc
Confidence            9999766666778888888 9998877655544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.07  E-value=1.9e-05  Score=69.72  Aligned_cols=117  Identities=14%  Similarity=0.089  Sum_probs=74.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+|+|+ |.||+.+++.+.. .++++. ++|+..  .....+.    ..|+.+++++++++.      ++|+||-.+.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMK-HGYPLI-IYDVFP--DACKEFQ----DAGEQVVSSPADVAE------KADRIITMLP   65 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHH-TTCCEE-EECSST--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CeEEEEec-cHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            58999995 9999999998875 467754 566531  2222332    346777889988885      6899997763


Q ss_pred             -hHhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          116 -ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       116 -p~~~~~~~~~------a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                       |....+.+..      .++.|.-+| -++|.+.+..+++.+...+.++..+ ...++.|.
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~~vv-~~s~~~~~~~~~~~~~~~~~g~~~~-~~p~~~g~  124 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGSLLI-DSSTIDPAVSKELAKEVEKMGAVFM-DAPVSGGV  124 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTCEEE-ECSCCCHHHHHHHHHHHHHTTCEEE-ECCEESHH
T ss_pred             CHHHHHHHHhCchhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCEEE-EcCCCCCh
Confidence             4444444432      123455444 4889988877777666554454443 33455563

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=98.06  E-value=9.3e-06  Score=75.39  Aligned_cols=131  Identities=16%  Similarity=0.189  Sum_probs=86.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC----C---CCeeeec-CHHHHHhccccCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----P---LEIPVMS-DLTMVLGSISQSK  105 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~----~---~gv~v~~-dl~~~l~~~~~~~  105 (257)
                      .++||+|+||+|-.|+.+++++.++|.++|+.+..+...|+...++.....    +   .+..+.+ +.++ +      .
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------~   78 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------D   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------T
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------c
Confidence            468999999999999999999999999999998876677877765321000    0   0222321 3222 3      2


Q ss_pred             CccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-------------CCCHHHHHHHHHHhhhcC--ceEEEccC-chHHH
Q 025154          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-------------HIQLETVSALSAFCDKAS--MGCLIAPT-LSIGS  169 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-------------G~s~e~~~~L~~~a~~~g--ipvl~spN-fSlGv  169 (257)
                      ++|+|+..+....+.+.+..+++.|+.+|.=+.             +++.++++.++..-++.|  ..++=.|| +..++
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~  158 (359)
T 4dpk_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGA  158 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHH
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHH
Confidence            799999777777888999999999998886443             345555444443211111  24676777 44444


Q ss_pred             HH
Q 025154          170 IL  171 (257)
Q Consensus       170 nl  171 (257)
                      .+
T Consensus       159 ~l  160 (359)
T 4dpk_A          159 AI  160 (359)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=98.06  E-value=9.3e-06  Score=75.39  Aligned_cols=131  Identities=16%  Similarity=0.189  Sum_probs=86.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC----C---CCeeeec-CHHHHHhccccCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----P---LEIPVMS-DLTMVLGSISQSK  105 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~----~---~gv~v~~-dl~~~l~~~~~~~  105 (257)
                      .++||+|+||+|-.|+.+++++.++|.++|+.+..+...|+...++.....    +   .+..+.+ +.++ +      .
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------~   78 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------D   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------T
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------c
Confidence            468999999999999999999999999999998876677877765321000    0   0222321 3222 3      2


Q ss_pred             CccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-------------CCCHHHHHHHHHHhhhcC--ceEEEccC-chHHH
Q 025154          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-------------HIQLETVSALSAFCDKAS--MGCLIAPT-LSIGS  169 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-------------G~s~e~~~~L~~~a~~~g--ipvl~spN-fSlGv  169 (257)
                      ++|+|+..+....+.+.+..+++.|+.+|.=+.             +++.++++.++..-++.|  ..++=.|| +..++
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~  158 (359)
T 4dpl_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGA  158 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHH
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHH
Confidence            799999777777888999999999998886443             345555444443211111  24676777 34444


Q ss_pred             HH
Q 025154          170 IL  171 (257)
Q Consensus       170 nl  171 (257)
                      .+
T Consensus       159 ~l  160 (359)
T 4dpl_A          159 AI  160 (359)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=98.05  E-value=1.6e-05  Score=74.43  Aligned_cols=99  Identities=20%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCCC-------CCeeeec-CHHHHHhccccCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQP-------LEIPVMS-DLTMVLGSISQSK  105 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~~~g~~~~-------~gv~v~~-dl~~~l~~~~~~~  105 (257)
                      |+||+|+||+|-.|+.+++++.++|.++|+.++. +...|+...++......       ....+.+ +.++.++      
T Consensus        19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~------   92 (381)
T 3hsk_A           19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFL------   92 (381)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGG------
T ss_pred             ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcc------
Confidence            5899999999999999999999999999998874 44667776543211000       0122211 1111232      


Q ss_pred             CccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      ++|+|+..+....+.+.+..+++.|+.+|-=+..
T Consensus        93 ~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~  126 (381)
T 3hsk_A           93 ECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKN  126 (381)
T ss_dssp             GCSEEEECCCHHHHHHHHHHHHHTTCEEEECCST
T ss_pred             cCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCc
Confidence            6899986666677788999999999998865543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.04  E-value=3.5e-05  Score=69.44  Aligned_cols=115  Identities=16%  Similarity=0.099  Sum_probs=71.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .|+||+|+| +|.||+.+++.+.+. +++-|.++|+.........+.    ..|+.++++++++++      ++|+||-.
T Consensus        23 ~~~~I~iIG-~G~mG~~~A~~L~~~-G~~~V~~~dr~~~~~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi~~   90 (312)
T 3qsg_A           23 NAMKLGFIG-FGEAASAIASGLRQA-GAIDMAAYDAASAESWRPRAE----ELGVSCKASVAEVAG------ECDVIFSL   90 (312)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHHH-SCCEEEEECSSCHHHHHHHHH----HTTCEECSCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHC-CCCeEEEEcCCCCHHHHHHHH----HCCCEEeCCHHHHHh------cCCEEEEe
Confidence            368999999 599999999988754 662344667531001111221    346778889999885      68999988


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhc--CceEE
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKA--SMGCL  160 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a~~~--gipvl  160 (257)
                      ..+....+.+....+.  .-.+|+-++...+...+++.+..++.  |+..+
T Consensus        91 vp~~~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~v  141 (312)
T 3qsg_A           91 VTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYA  141 (312)
T ss_dssp             SCTTTHHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred             cCchhHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEE
Confidence            7777666665544432  22366666666666666666665554  44443

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=98.03  E-value=7.3e-06  Score=76.09  Aligned_cols=102  Identities=19%  Similarity=0.168  Sum_probs=63.7

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec-CCCCc---------chhhhhcC----CCC-----CCeeeec
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGE---------DIGMVCDM----EQP-----LEIPVMS   92 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~---------d~g~~~g~----~~~-----~gv~v~~   92 (257)
                      ...|+||+|+|+ |++|+.+++++.++|+++|+++-|+ ...+.         ..+.+.+.    +..     ..+.++.
T Consensus        14 ~~~~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~   92 (354)
T 3cps_A           14 LYFQGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQ   92 (354)
T ss_dssp             ----CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEEC
T ss_pred             cCcceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEe
Confidence            344789999998 9999999999999999999999882 21110         00001000    000     0223432


Q ss_pred             --CHHHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEeCC
Q 025154           93 --DLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (257)
Q Consensus        93 --dl~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViGTT  138 (257)
                        |++++. .+    .++|+|++.|......+.+...++.|.. +||-.+
T Consensus        93 ~~dp~~i~w~~----~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~p  138 (354)
T 3cps_A           93 AKDPAEIPWGA----SGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAP  138 (354)
T ss_dssp             CSCGGGCCHHH----HTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             cCChHHCCccc----CCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCC
Confidence              555431 00    2689999988878888899888999974 555443

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.03  E-value=3.1e-05  Score=68.43  Aligned_cols=113  Identities=17%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +|||+|+| .|.||+.+++.+.. .++++ .++|+..  .....+.    ..|+.++.+++++++      ++|+||..+
T Consensus         5 ~m~i~iiG-~G~~G~~~a~~l~~-~g~~V-~~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~v   69 (299)
T 1vpd_A            5 TMKVGFIG-LGIMGKPMSKNLLK-AGYSL-VVSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITML   69 (299)
T ss_dssp             -CEEEEEC-CSTTHHHHHHHHHH-TTCEE-EEECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             cceEEEEC-chHHHHHHHHHHHh-CCCEE-EEEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEEC
Confidence            47999999 59999999998875 46775 4666531  1122222    236777889988885      689999877


Q ss_pred             C-hHhHHHHH------HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          115 D-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       115 ~-p~~~~~~~------~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      . |......+      ...++.|..+|.-+++. ....+.|.+...+.|+.++-+|
T Consensus        70 ~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~g~~~~~~p  124 (299)
T 1vpd_A           70 PNSPHVKEVALGENGIIEGAKPGTVLIDMSSIA-PLASREISDALKAKGVEMLDAP  124 (299)
T ss_dssp             SSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCC-HHHHHHHHHHHHTTTCEEEECC
T ss_pred             CCHHHHHHHHhCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEEec
Confidence            6 44444333      23345566666555555 4445567776666566655443

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=98.03  E-value=4.1e-05  Score=71.20  Aligned_cols=93  Identities=12%  Similarity=0.037  Sum_probs=62.9

Q ss_pred             CceEEEEcCCChHHHHHHH-HHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccE
Q 025154           35 NIKVIINGAVKEIGRAAVI-AVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~-~i~~~--~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DV  109 (257)
                      |+||+|+||+|+.|+.+++ ++.++  +..++...... ..|+....+.+    ..+.+.  ++.++ +.      ++|+
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~~v~~~~g----~~i~~~~~~~~~~-~~------~~Dv   68 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQAAPSFGG----TTGTLQDAFDLEA-LK------ALDI   68 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSBCCGGGT----CCCBCEETTCHHH-HH------TCSE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCCCccccCC----CceEEEecCChHH-hc------CCCE
Confidence            6899999999999999999 55443  23455544333 34654432222    133443  24554 43      7999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCC-eEEeCCC
Q 025154          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~-vViGTTG  139 (257)
                      |++.+......+++..+++.|++ +||.-++
T Consensus        69 Vf~a~g~~~s~~~a~~~~~~G~k~vVID~ss   99 (367)
T 1t4b_A           69 IVTCQGGDYTNEIYPKLRESGWQGYWIDAAS   99 (367)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             EEECCCchhHHHHHHHHHHCCCCEEEEcCCh
Confidence            99888888899999999999984 6666553

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=98.01  E-value=1.6e-05  Score=73.78  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvID  112 (257)
                      -|+||+|+||+|..|+.+++++.++|.++|+.+.+....|+...++...- ...+.+.+ +.+++.+      ++|+++-
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~-~~~l~~~~~~~~~~~~------~~Dvvf~   84 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPST-LENSILSEFDPEKVSK------NCDVLFT   84 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGG-CCCCBCBCCCHHHHHH------HCSEEEE
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhh-ccCceEEeCCHHHhhc------CCCEEEE
Confidence            48999999999999999999999999999999777666787776542210 12233322 4555543      6899884


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      .+....+.+.+..+  .|+.||--...|
T Consensus        85 alp~~~s~~~~~~~--~g~~VIDlSsdf  110 (351)
T 1vkn_A           85 ALPAGASYDLVREL--KGVKIIDLGADF  110 (351)
T ss_dssp             CCSTTHHHHHHTTC--CSCEEEESSSTT
T ss_pred             CCCcHHHHHHHHHh--CCCEEEECChhh
Confidence            44445666777666  788877545444

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=97.97  E-value=9.5e-05  Score=68.65  Aligned_cols=136  Identities=15%  Similarity=0.170  Sum_probs=92.4

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcC----------------------CcEEEEEEe--cCCCCcchhhhhcCC-----
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKAR----------------------GMEVAGAID--SHSVGEDIGMVCDME-----   83 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~----------------------~~eLvg~vd--~~~~g~d~g~~~g~~-----   83 (257)
                      ..++||+|+|. |..|+++++-+...+                      ++++++++|  ..+.|+++.+..-..     
T Consensus        13 ~~~~rVaIVGv-GN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~l~~A~~~~~n~~~   91 (367)
T 1gr0_A           13 STEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTI   91 (367)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCC
T ss_pred             ccCCCEEEECc-ChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHHhhCCEecCCCchh
Confidence            44799999997 999999999665444                      778999999  346676654321000     


Q ss_pred             -----CCCCee-----------------------eecCHHHHHhccccCCCccEEEEcC---ChHhHHHHHHHHHHcCCC
Q 025154           84 -----QPLEIP-----------------------VMSDLTMVLGSISQSKARAVVIDFT---DASTVYDNVKQATAFGMR  132 (257)
Q Consensus        84 -----~~~gv~-----------------------v~~dl~~~l~~~~~~~~~DVvIDFT---~p~~~~~~~~~a~~~Gi~  132 (257)
                           .+.++.                       ...|+.+.+++    .++||+|.+-   +-++..-++.+|++.|++
T Consensus        92 ~~~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~~----~~~dVvV~~lp~gs~~aS~~YA~Aal~ag~~  167 (367)
T 1gr0_A           92 KIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKE----AKVDVLVSYLPVGSEEADKFYAQCAIDAGVA  167 (367)
T ss_dssp             CCSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHH----TTCSEEEECCCTTCHHHHHHHHHHHHHHTCE
T ss_pred             hhhcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHHH----hCCcEEEEeeeCCCcCHHHHHHHHHHHcCCc
Confidence                 000110                       12255555654    6899999874   345666788899999999


Q ss_pred             eEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch--HHHHHHHHH
Q 025154          133 SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQA  175 (257)
Q Consensus       133 vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS--lGvnll~~~  175 (257)
                      .|-|++-+... ...+.++++++|+|++ .--|=  .|-.++...
T Consensus       168 fvN~~P~~~~~-~P~~~el~~~~g~pi~-GdD~Ksq~G~T~~k~~  210 (367)
T 1gr0_A          168 FVNALPVFIAS-DPVWAKKFTDARVPIV-GDDIKSQVGATITHRV  210 (367)
T ss_dssp             EEECSSCCSTT-SHHHHHHHHHHTCEEE-ESSBCCSSCHHHHHHH
T ss_pred             eEecCCccccC-CHHHHHHHHHcCCCEe-ccccccccCCChHHHH
Confidence            99999966542 2458888899888855 55566  788765443

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=97.97  E-value=1.5e-05  Score=73.56  Aligned_cols=94  Identities=17%  Similarity=0.155  Sum_probs=62.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhcCCC-----CCCeeee--c
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCDMEQ-----PLEIPVM--S   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~~~g~~~-----~~gv~v~--~   92 (257)
                      |+||||+|+ |++|+.+++++.++  |+++|+++.|..             ..|+..+++.-.+.     ...++++  .
T Consensus         2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (339)
T 3b1j_A            2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR   80 (339)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecC
Confidence            489999998 99999999999888  999999987631             11221111100000     0123333  3


Q ss_pred             CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCC
Q 025154           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~  132 (257)
                      |++++.-   .+.++|+|++.|......+.+...++.|..
T Consensus        81 dp~~l~w---~~~~vDvV~e~tg~~~s~e~a~~~l~~Gak  117 (339)
T 3b1j_A           81 NPLNLPW---KEWDIDLVIESTGVFVTAEGASKHIQAGAK  117 (339)
T ss_dssp             CGGGSCT---TTTTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             ChHHCcc---cccCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            5655421   002689999998777788889999999988

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.97  E-value=8.6e-05  Score=68.67  Aligned_cols=117  Identities=12%  Similarity=0.037  Sum_probs=72.5

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      -.+|||+|+| +|.||+.+++.+.+ .+++++ ++|+..  ..+..+.    ..|+..+++++++++..   ..+|+||-
T Consensus        20 m~~mkIgiIG-lG~mG~~~A~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~e~~~~a---~~~DvVi~   87 (358)
T 4e21_A           20 FQSMQIGMIG-LGRMGADMVRRLRK-GGHECV-VYDLNV--NAVQALE----REGIAGARSIEEFCAKL---VKPRVVWL   87 (358)
T ss_dssp             --CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----TTTCBCCSSHHHHHHHS---CSSCEEEE
T ss_pred             hcCCEEEEEC-chHHHHHHHHHHHh-CCCEEE-EEeCCH--HHHHHHH----HCCCEEeCCHHHHHhcC---CCCCEEEE
Confidence            3458999999 59999999998875 567765 567531  1222332    34677788999988620   23499997


Q ss_pred             cCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 025154          113 FTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (257)
Q Consensus       113 FT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~s  162 (257)
                      ...+..+.+.+....   +.|.-+|..+|.. .....++.+..++.|+..+=+
T Consensus        88 ~vp~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~vda  139 (358)
T 4e21_A           88 MVPAAVVDSMLQRMTPLLAANDIVIDGGNSH-YQDDIRRADQMRAQGITYVDV  139 (358)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTTCEEEECSSCC-HHHHHHHHHHHHTTTCEEEEE
T ss_pred             eCCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-hHHHHHHHHHHHHCCCEEEeC
Confidence            776665555554443   3455555555544 444555666666667765533

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=97.96  E-value=1.4e-05  Score=73.76  Aligned_cols=99  Identities=22%  Similarity=0.187  Sum_probs=66.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh---cC---CCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC---DM---EQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~-------------~~~g~d~g~~~---g~---~~~~gv~v~--   91 (257)
                      |+||||+|+ |++|+.+++++.++  |+++|+++-|.             ...|+..+++.   +.   .....+.++  
T Consensus         1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~   79 (337)
T 1rm4_O            1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD   79 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEec
Confidence            689999998 99999999999988  99999998852             11232222211   10   000112333  


Q ss_pred             cCHHHH-HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154           92 SDLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus        92 ~dl~~~-l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      .|++++ ..+    .++|+|++.|......+.+...++.|..+|+=+.
T Consensus        80 ~dp~~i~w~~----~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSa  123 (337)
T 1rm4_O           80 RNPVNLPWGD----MGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITA  123 (337)
T ss_dssp             SCGGGSCHHH----HTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESS
T ss_pred             CChhhCcccc----cCCCEEEECCCchhhHHHHHHHHHcCCEEEEECC
Confidence            345443 111    2689999988878888999999999998887543

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.96  E-value=2.3e-05  Score=72.96  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=67.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvI  111 (257)
                      ++||+|+||+|..|+.+++.+.++  |..+|+.+..+...|+... +.+    .+..+.+ +.+ .+      .++|+|+
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~~----~~~~~~~~~~~-~~------~~~Dvvf   69 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FKD----QDITIEETTET-AF------EGVDIAL   69 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ETT----EEEEEEECCTT-TT------TTCSEEE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ecC----CCceEeeCCHH-Hh------cCCCEEE
Confidence            589999999999999999988876  7888888766555565443 111    1222221 222 23      2799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      ..+....+.+.+..+++.|+.+|--+.-|
T Consensus        70 ~a~~~~~s~~~a~~~~~~G~~vIDlSa~~   98 (366)
T 3pwk_A           70 FSAGSSTSAKYAPYAVKAGVVVVDNTSYF   98 (366)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             ECCChHhHHHHHHHHHHCCCEEEEcCCcc
Confidence            88877888999999999999887655543

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.96  E-value=5.5e-05  Score=65.67  Aligned_cols=104  Identities=18%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+|+|+ |.||+.+++.+.+ .++++.. +|+.........+.    ..|+.  +++++++.      ++|+||-...
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~-~g~~V~~-~~~~~~~~~~~~~~----~~g~~--~~~~~~~~------~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRS-RGVEVVT-SLEGRSPSTIERAR----TVGVT--ETSEEDVY------SCPVVISAVT   65 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHH-TTCEEEE-CCTTCCHHHHHHHH----HHTCE--ECCHHHHH------TSSEEEECSC
T ss_pred             CeEEEEec-hHHHHHHHHHHHH-CCCeEEE-eCCccCHHHHHHHH----HCCCc--CCHHHHHh------cCCEEEEECC
Confidence            58999995 9999999998875 5778766 45421111122222    12444  67777775      7999998887


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~  154 (257)
                      +....+.+....+.-.++|+-+++.+.+..+.|.+...+
T Consensus        66 ~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHHHhh
Confidence            776666665555443337777777777666777777665

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.95  E-value=0.00012  Score=65.22  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=72.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++||+|+| .|.||+.+++.+.+ .++++. ++|+..  ..+..+.    ..|+..++++++++      . +|+||-..
T Consensus        15 ~~~I~vIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~------~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIG-LGNMGAPMATRMTE-WPGGVT-VYDIRI--EAMTPLA----EAGATLADSVADVA------A-ADLIHITV   78 (296)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHTT-STTCEE-EECSST--TTSHHHH----HTTCEECSSHHHHT------T-SSEEEECC
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCEEcCCHHHHH------h-CCEEEEEC
Confidence            46999999 59999999998764 577765 457532  1122232    24677888999987      4 99988766


Q ss_pred             C-hHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          115 D-ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       115 ~-p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      . +..+.+.+....+   .|. +|+-++.......+++.+..++.|+.++-+|
T Consensus        79 p~~~~~~~v~~~l~~~l~~g~-ivv~~st~~~~~~~~~~~~~~~~g~~~~~~p  130 (296)
T 3qha_A           79 LDDAQVREVVGELAGHAKPGT-VIAIHSTISDTTAVELARDLKARDIHIVDAP  130 (296)
T ss_dssp             SSHHHHHHHHHHHHTTCCTTC-EEEECSCCCHHHHHHHHHHHGGGTCEEEECC
T ss_pred             CChHHHHHHHHHHHHhcCCCC-EEEEeCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            5 4444545444433   344 4444555556666777777776677666554

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.94  E-value=2.3e-05  Score=72.05  Aligned_cols=91  Identities=16%  Similarity=0.155  Sum_probs=64.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvI  111 (257)
                      +|||+|+||+|++|+.+++.+.  ..+.++|+++.++...|+... +.+    ..+.+.+ +.++ +      .++|+|+
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~-~~g----~~i~~~~~~~~~-~------~~~DvV~   73 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAE----SSLRVGDVDSFD-F------SSVGLAF   73 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETT----EEEECEEGGGCC-G------GGCSEEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc-cCC----cceEEecCCHHH-h------cCCCEEE
Confidence            4799999999999999999988  568999998877543343221 111    1222221 2222 3      2689999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      ..+......+.+..+++.|+.+|.=+
T Consensus        74 ~a~g~~~s~~~a~~~~~aG~kvId~S   99 (340)
T 2hjs_A           74 FAAAAEVSRAHAERARAAGCSVIDLS   99 (340)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred             EcCCcHHHHHHHHHHHHCCCEEEEeC
Confidence            87777888899999999999877544

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.94  E-value=7.8e-05  Score=66.27  Aligned_cols=114  Identities=9%  Similarity=0.091  Sum_probs=72.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~---eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ++||+|+|+ |.||+.+++.+... ++   + +.++|+..  .....+.   ..+|+.++.|..++++      ++|+||
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~-g~~~~~-V~v~dr~~--~~~~~l~---~~~gi~~~~~~~~~~~------~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIAN-GYDPNR-ICVTNRSL--DKLDFFK---EKCGVHTTQDNRQGAL------NADVVV   68 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHT-TCCGGG-EEEECSSS--HHHHHHH---HTTCCEEESCHHHHHS------SCSEEE
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHC-CCCCCe-EEEEeCCH--HHHHHHH---HHcCCEEeCChHHHHh------cCCeEE
Confidence            579999995 99999999988754 34   4 34667531  2223332   2357888889888885      799999


Q ss_pred             EcCChHhHHHHHHHHHHc---CCCeEEe-CCCCCHHHHHHHHHHhhhcCceEE-EccCch
Q 025154          112 DFTDASTVYDNVKQATAF---GMRSVVY-VPHIQLETVSALSAFCDKASMGCL-IAPTLS  166 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~---Gi~vViG-TTG~s~e~~~~L~~~a~~~gipvl-~spNfS  166 (257)
                      -...|....+.+......   +..+|+- +.|++.++   |+++... +.+++ .-||..
T Consensus        69 lav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~---l~~~l~~-~~~vvr~mPn~p  124 (280)
T 3tri_A           69 LAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPL---IEKWLGK-ASRIVRAMPNTP  124 (280)
T ss_dssp             ECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHH---HHHHHTC-CSSEEEEECCGG
T ss_pred             EEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHHH---HHHHcCC-CCeEEEEecCCh
Confidence            888887777666554432   3335544 55888654   4444332 13444 336654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.94  E-value=4.2e-05  Score=67.64  Aligned_cols=115  Identities=16%  Similarity=0.141  Sum_probs=74.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |+||+|+| +|.||+.+++.+.+. ++++. ++|+..  ..+..+.    ..|+.++++++++++      ++|+||-..
T Consensus         1 M~~I~iiG-~G~mG~~~a~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLG-LGIMGGPMAANLVRA-GFDVT-VWNRNP--AKCAPLV----ALGARQASSPAEVCA------ACDITIAML   65 (287)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHHHH-TCCEE-EECSSG--GGGHHHH----HHTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEc-cCHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHH------cCCEEEEEc
Confidence            67999999 599999999988754 67765 466531  1122222    236777889999886      689998776


Q ss_pred             ChH-hHHHHH---HH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          115 DAS-TVYDNV---KQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       115 ~p~-~~~~~~---~~---a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      .+. .+.+.+   ..   .+..|. +|+-++..+.+..+++.+..++.|+.++-+|.+
T Consensus        66 ~~~~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  122 (287)
T 3pdu_A           66 ADPAAAREVCFGANGVLEGIGGGR-GYIDMSTVDDETSTAIGAAVTARGGRFLEAPVS  122 (287)
T ss_dssp             SSHHHHHHHHHSTTCGGGTCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CCHHHHHHHHcCchhhhhcccCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEECCcc
Confidence            544 444444   22   223444 445555556666677777777767777666644

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.93  E-value=6.9e-05  Score=71.75  Aligned_cols=130  Identities=16%  Similarity=0.109  Sum_probs=86.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----e---cCHHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~---~dl~~~l~~~~~~~~~  107 (257)
                      +.||+|+|+ |.+|+.+++.+.+.++.++ .++++..  ..+..++.   ..++..    .   +++.+++.      ++
T Consensus        23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V-~v~~R~~--~ka~~la~---~~~~~~~~~D~~d~~~l~~~l~------~~   89 (467)
T 2axq_A           23 GKNVLLLGS-GFVAQPVIDTLAANDDINV-TVACRTL--ANAQALAK---PSGSKAISLDVTDDSALDKVLA------DN   89 (467)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSTTEEE-EEEESSH--HHHHHHHG---GGTCEEEECCTTCHHHHHHHHH------TS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHhCCCCeE-EEEECCH--HHHHHHHH---hcCCcEEEEecCCHHHHHHHHc------CC
Confidence            568999997 9999999999987767874 4556431  11222221   112211    1   23445554      79


Q ss_pred             cEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH--HHHHHHHHh
Q 025154          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISA  179 (257)
Q Consensus       108 DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn--ll~~~a~~l  179 (257)
                      |+||..+.+.........|++.|++++. ++-++++ ...+.+.|+++|+.++-...|.-|+.  ++.+++.++
T Consensus        90 DvVIn~tp~~~~~~v~~a~l~~g~~vvd-~~~~~p~-~~~Ll~~Ak~aGv~~i~g~G~~PG~~~~~a~~li~q~  161 (467)
T 2axq_A           90 DVVISLIPYTFHPNVVKSAIRTKTDVVT-SSYISPA-LRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEV  161 (467)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHTCEEEE-CSCCCHH-HHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred             CEEEECCchhhhHHHHHHHHhcCCEEEE-eecCCHH-HHHHHHHHHHcCCEEEecCCcCccchHHHHHHHHHHH
Confidence            9999998777666778899999999875 3434554 46677788888999887777766653  234444444

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=97.91  E-value=2e-05  Score=73.81  Aligned_cols=93  Identities=16%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh--c--C-CCCCCeeee--c
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC--D--M-EQPLEIPVM--S   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~-------------~~~g~d~g~~~--g--~-~~~~gv~v~--~   92 (257)
                      |+||+|+|+ |++|+.+++++.++  ++++|+++-|.             ...|+..+++.  +  + .....+.++  .
T Consensus         2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (380)
T 2d2i_A            2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR   80 (380)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred             CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecC
Confidence            489999997 99999999999887  89999998763             11222211110  0  0 000113332  3


Q ss_pred             CHHHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCC
Q 025154           93 DLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (257)
Q Consensus        93 dl~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~  132 (257)
                      |++++. .+    .++|+|++.|......+.+...++.|..
T Consensus        81 dp~~l~w~~----~gvDvV~e~TG~f~s~e~a~~hl~aGak  117 (380)
T 2d2i_A           81 NPLNLPWKE----WDIDLVIESTGVFVTAEGASKHIQAGAK  117 (380)
T ss_dssp             CGGGCCHHH----HTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             ChHHCCccc----CCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            555542 10    2689999998877888899999999988

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.90  E-value=1e-05  Score=71.52  Aligned_cols=111  Identities=15%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ||||+|+|++|.||+.+++.+.. .+++++ ++|+..  .....+.    ..|+.+. ++.++++      ++|+||.+.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~~------~aDvVi~av   75 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHD-SAHHLA-AIEIAP--EGRDRLQ----GMGIPLT-DGDGWID------EADVVVLAL   75 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-SSSEEE-EECCSH--HHHHHHH----HTTCCCC-CSSGGGG------TCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----hcCCCcC-CHHHHhc------CCCEEEEcC
Confidence            57999999669999999998875 567876 566531  1122222    1234333 5556664      799999888


Q ss_pred             ChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCc
Q 025154          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTL  165 (257)
Q Consensus       115 ~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNf  165 (257)
                      .|....+.+.....   .+.-+|..++|.+.+   .++++  ..+..++ ..||+
T Consensus        76 ~~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~---~l~~~--~~~~~~v~~~P~~  125 (286)
T 3c24_A           76 PDNIIEKVAEDIVPRVRPGTIVLILDAAAPYA---GVMPE--RADITYFIGHPCH  125 (286)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEESCSHHHHH---TCSCC--CTTSEEEEEEECC
T ss_pred             CchHHHHHHHHHHHhCCCCCEEEECCCCchhH---HHHhh--hCCCeEEecCCCC
Confidence            88877666655433   355555566676432   23332  2346777 77777

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=97.89  E-value=2.8e-05  Score=71.42  Aligned_cols=101  Identities=25%  Similarity=0.218  Sum_probs=66.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCc-------c--hhhhhcCC----CCC-----Ceeeec--CH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-------D--IGMVCDME----QPL-----EIPVMS--DL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~-------d--~g~~~g~~----~~~-----gv~v~~--dl   94 (257)
                      |+||||+|+ |++|+.+++++.++|+++|+++-+....+.       |  -+.+.+..    ..+     .+.++.  |+
T Consensus         1 ~ikVgI~G~-G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (330)
T 1gad_O            1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (330)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECc-CHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence            689999995 999999999999999999999987421111       0  01110000    000     122332  45


Q ss_pred             HHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154           95 TMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus        95 ~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      +++- ..    .++|+|++.|......+.+...++.|..+|+=+..+
T Consensus        80 ~~i~w~~----~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~  122 (330)
T 1gad_O           80 ANLKWDE----VGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (330)
T ss_dssp             GGGCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             hhCcccc----ccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC
Confidence            5431 10    268999998888888899999999999987654433

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=97.88  E-value=3.1e-05  Score=72.12  Aligned_cols=117  Identities=9%  Similarity=0.111  Sum_probs=74.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee-----cC--------------HHH
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-----SD--------------LTM   96 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~-----~d--------------l~~   96 (257)
                      .||+|.|+||.+|+..++.+.+.+++++++.....    +...+.....+++..++     .+              +.+
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~----n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~e   79 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHS----NLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEE   79 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESS----CHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccC----CHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHH
Confidence            68999999999999999999888789999985421    11111100001111111     11              245


Q ss_pred             HHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus        97 ~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      ++..    .++|+|+-.+.-...+.....|+++|++|.+.-=.-.-..-+.+.++++++|+.++
T Consensus        80 l~~~----~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~ll  139 (376)
T 3a06_A           80 MLEA----LKPDITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELI  139 (376)
T ss_dssp             HHHH----HCCSEEEECCCSTTHHHHHHHHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             HhcC----CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEEE
Confidence            5542    46999999988889999999999999999983211111223456666666555443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.87  E-value=0.00011  Score=66.34  Aligned_cols=114  Identities=15%  Similarity=0.147  Sum_probs=77.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .|.||+++| .|.||..+++.+.+ .++++. ++|+..  ..+..+.    ..|....+++.++.+      .+|+||-.
T Consensus         2 ~M~kIgfIG-lG~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~a~s~~e~~~------~~dvv~~~   66 (300)
T 3obb_A            2 HMKQIAFIG-LGHMGAPMATNLLK-AGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVISM   66 (300)
T ss_dssp             -CCEEEEEC-CSTTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------TCSEEEEC
T ss_pred             CcCEEEEee-ehHHHHHHHHHHHh-CCCeEE-EEcCCH--HHHHHHH----HcCCEEcCCHHHHHh------cCCceeec
Confidence            367999999 69999999999874 578765 577531  1122332    346778889999885      78987754


Q ss_pred             -CChHhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          114 -TDASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       114 -T~p~~~~~~~~~------a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                       +.++.+.+.+..      .++.|. +||-+|..+++..+++.+.+++.|+..+=+|
T Consensus        67 l~~~~~v~~V~~~~~g~~~~~~~g~-iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP  122 (300)
T 3obb_A           67 LPASQHVEGLYLDDDGLLAHIAPGT-LVLECSTIAPTSARKIHAAARERGLAMLDAP  122 (300)
T ss_dssp             CSCHHHHHHHHHSSSSSTTSCCC-C-EEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred             CCchHHHHHHHhchhhhhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEecC
Confidence             345555555432      112233 5555555678888889999988888877665

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=97.87  E-value=1.8e-05  Score=72.80  Aligned_cols=96  Identities=25%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhh--c--C-CCCCCeeeec--CH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVC--D--M-EQPLEIPVMS--DL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~~~--g--~-~~~~gv~v~~--dl   94 (257)
                      |+||||+|+ |++|+.+++++.++|+++++++-+..             ..|+-.+++.  +  + .....+.++.  |+
T Consensus         1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (334)
T 3cmc_O            1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (334)
T ss_dssp             CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence            689999998 99999999999999999999988741             1111100000  0  0 0001244442  55


Q ss_pred             HHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEE
Q 025154           95 TMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (257)
Q Consensus        95 ~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vVi  135 (257)
                      +++- .+    .++|+|++.|......+.+...++.|.. +||
T Consensus        80 ~~i~w~~----~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVI  118 (334)
T 3cmc_O           80 ENLAWGE----IGVDIVVESTGRFTKREDAAKHLEAGAKKVII  118 (334)
T ss_dssp             GGCCTGG----GTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             hhcCccc----CccCEEEECCCchhhHHHHHHHHHCCCCEEEE
Confidence            5441 11    2689999988878888899999999973 444

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=97.86  E-value=0.00015  Score=57.09  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      +.||+|+|+ |.+|+.+++.+...++++++|.+|..
T Consensus         4 ~~~vlIiGa-G~~g~~l~~~l~~~~g~~vvg~~d~~   38 (141)
T 3nkl_A            4 KKKVLIYGA-GSAGLQLANMLRQGKEFHPIAFIDDD   38 (141)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCcEEEEEEECC
Confidence            468999995 99999999999888899999999853

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.85  E-value=0.00011  Score=68.68  Aligned_cols=94  Identities=14%  Similarity=0.078  Sum_probs=67.0

Q ss_pred             CCceEEEEcCCChHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCcc
Q 025154           34 SNIKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARA  108 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~-~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~D  108 (257)
                      +++||+|+||||-.|+.+++ ++.++|  ..+++.+..+ ..|+...++.+.    ...+.  ++.++ ++      ++|
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~----~~~v~~~~~~~~-~~------~vD   70 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKN----ETTLKDATSIDD-LK------KCD   70 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCS----CCBCEETTCHHH-HH------TCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCC----ceEEEeCCChhH-hc------CCC
Confidence            56899999999999999999 888887  6888776554 556655444321    22332  24444 33      799


Q ss_pred             EEEEcCChHhHHHHHHHHHHcCCC-eEEeCCC
Q 025154          109 VVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (257)
Q Consensus       109 VvIDFT~p~~~~~~~~~a~~~Gi~-vViGTTG  139 (257)
                      +|+..+....+.+.+..+++.|+. +||-.++
T Consensus        71 vvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss  102 (377)
T 3uw3_A           71 VIITCQGGDYTNDVFPKLRAAGWNGYWIDAAS  102 (377)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEEECCChHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            999777777778999999999973 5665543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.85  E-value=0.0001  Score=66.13  Aligned_cols=118  Identities=12%  Similarity=0.068  Sum_probs=74.3

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ...++||+|+| .|.||+.+++.+.+ .++++. ++|+..  .....+.    ..|+..+++++++++      .+|+||
T Consensus         6 ~~~~~~IgiIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi   70 (306)
T 3l6d_A            6 ESFEFDVSVIG-LGAMGTIMAQVLLK-QGKRVA-IWNRSP--GKAAALV----AAGAHLCESVKAALS------ASPATI   70 (306)
T ss_dssp             CCCSCSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHH----HHTCEECSSHHHHHH------HSSEEE
T ss_pred             ccCCCeEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEE
Confidence            34568999999 59999999998875 577765 466531  1122222    235677889999886      689988


Q ss_pred             EcCChHh-HHHHHH----HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          112 DFTDAST-VYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       112 DFT~p~~-~~~~~~----~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      -...+.. +.+.+.    ..+..|.-+ +-++..+.+..+++.+..++.|+.++-+|-+
T Consensus        71 ~~vp~~~~~~~v~~~~~l~~~~~g~iv-id~st~~~~~~~~l~~~~~~~g~~~vdapv~  128 (306)
T 3l6d_A           71 FVLLDNHATHEVLGMPGVARALAHRTI-VDYTTNAQDEGLALQGLVNQAGGHYVKGMIV  128 (306)
T ss_dssp             ECCSSHHHHHHHHTSTTHHHHTTTCEE-EECCCCCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEeCCHHHHHHHhcccchhhccCCCEE-EECCCCCHHHHHHHHHHHHHcCCeEEecccc
Confidence            7765333 443332    123445444 4444455556667777777767777665443

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=97.84  E-value=2.9e-05  Score=71.54  Aligned_cols=100  Identities=23%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh---cCCcEEEEEEecC-------------CCCcchhhhh--c--C-CCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSH-------------SVGEDIGMVC--D--M-EQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~-------------~~g~d~g~~~--g--~-~~~~gv~v~--   91 (257)
                      |+||+|+|+ |++|+.+++++.+   +|+++|+++.+..             ..|+-.+++.  +  + .....+.++  
T Consensus         2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~   80 (339)
T 2x5j_O            2 TVRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHE   80 (339)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred             CeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEec
Confidence            489999997 9999999999988   8999999988731             0111110000  0  0 000123444  


Q ss_pred             cCHHHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEeCCC
Q 025154           92 SDLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (257)
Q Consensus        92 ~dl~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViGTTG  139 (257)
                      .|++++. .+    .++|+|++.|......+.+...++.|.. +||-.++
T Consensus        81 ~dp~~l~~~~----~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           81 RSLQSLPWRE----LGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             SSGGGCCHHH----HTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             CChHHCcccc----cCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence            3555431 11    2689999999888888999999999988 5555554

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.84  E-value=5e-05  Score=63.70  Aligned_cols=120  Identities=10%  Similarity=0.064  Sum_probs=70.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C---CCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E---QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~---~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |||+|+|++|.||+.+++.+.+ .++++.. +++..  .....+... +   ....+. .++++++++      ++|+||
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~-~g~~V~~-~~r~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~D~Vi   69 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLAT-LGHEIVV-GSRRE--EKAEAKAAEYRRIAGDASIT-GMKNEDAAE------ACDIAV   69 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEE-EESSH--HHHHHHHHHHHHHHSSCCEE-EEEHHHHHH------HCSEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHHHHhccccccCCCC-hhhHHHHHh------cCCEEE
Confidence            5899999679999999998875 5677664 55431  111111100 0   001233 467777775      699999


Q ss_pred             EcCChHhHHHHHHHHHH--cCCCeEEeCCCCCH-----------HHHHHHHHHhhhcCceEEEc-cCchHH
Q 025154          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQL-----------ETVSALSAFCDKASMGCLIA-PTLSIG  168 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~--~Gi~vViGTTG~s~-----------e~~~~L~~~a~~~gipvl~s-pNfSlG  168 (257)
                      ..+.+....+.+....+  .+..+|.-++|++.           ...++|.+....  ..++.+ +|++..
T Consensus        70 ~~~~~~~~~~~~~~l~~~~~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~v~~~~~~~~~  138 (212)
T 1jay_A           70 LTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES--EKVVSALHTIPAA  138 (212)
T ss_dssp             ECSCHHHHHHHHHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC--SCEEECCTTCCHH
T ss_pred             EeCChhhHHHHHHHHHHHcCCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC--CeEEEEccchHHH
Confidence            98887776655543221  36667777777762           113445554433  566665 344433

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.80  E-value=0.0002  Score=64.65  Aligned_cols=112  Identities=11%  Similarity=0.047  Sum_probs=71.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCC--C---cchhhhhcCCCCCCeeeec-CHHHHHhccccCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV--G---EDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~--g---~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~  106 (257)
                      .++||+|+| +|.||..+++.+.. .+ +++. ++|+...  .   .....+.    ..|+  ++ +++++++      +
T Consensus        23 M~m~IgvIG-~G~mG~~lA~~L~~-~G~~~V~-~~dr~~~~~~~~~~~~~~~~----~~g~--~~~s~~e~~~------~   87 (317)
T 4ezb_A           23 MMTTIAFIG-FGEAAQSIAGGLGG-RNAARLA-AYDLRFNDPAASGALRARAA----ELGV--EPLDDVAGIA------C   87 (317)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHT-TTCSEEE-EECGGGGCTTTHHHHHHHHH----HTTC--EEESSGGGGG------G
T ss_pred             cCCeEEEEC-ccHHHHHHHHHHHH-cCCCeEE-EEeCCCccccchHHHHHHHH----HCCC--CCCCHHHHHh------c
Confidence            357999999 59999999998874 46 7766 5665310  0   0111121    2344  55 7777775      6


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          107 RAVVIDFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      +|+||-...+....+.+......  .-.+|+-+++.++...+++.+..++.|+..+
T Consensus        88 aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~  143 (317)
T 4ezb_A           88 ADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFV  143 (317)
T ss_dssp             CSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEE
T ss_pred             CCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            89999877777666666544432  1235666666667777777777766565544

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.79  E-value=0.00013  Score=67.96  Aligned_cols=92  Identities=14%  Similarity=0.005  Sum_probs=65.3

Q ss_pred             ceEEEEcCCChHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~-~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVv  110 (257)
                      |||+|+||||-.|+.+++ ++.++|  ..+++.+..+. .|+...++.+.    ...+.  ++.++ ++      ++|+|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~----~~~~~~~~~~~~-~~------~~Dvv   68 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD----AGMLHDAFDIES-LK------QLDAV   68 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC----CCBCEETTCHHH-HT------TCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC----ceEEEecCChhH-hc------cCCEE
Confidence            699999999999999999 888888  67888765543 56655443321    22332  24444 43      79999


Q ss_pred             EEcCChHhHHHHHHHHHHcCC-CeEEeCCC
Q 025154          111 IDFTDASTVYDNVKQATAFGM-RSVVYVPH  139 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi-~vViGTTG  139 (257)
                      +..+....+.+.+..+++.|. .+||-.++
T Consensus        69 f~a~~~~~s~~~~~~~~~~G~k~~VID~ss   98 (370)
T 3pzr_A           69 ITCQGGSYTEKVYPALRQAGWKGYWIDAAS   98 (370)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             EECCChHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            977777777899999999997 35655543

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=97.77  E-value=6.6e-05  Score=69.36  Aligned_cols=92  Identities=14%  Similarity=0.096  Sum_probs=66.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |||+|+||+|-.|+.+++++.++  |..+|+.+......|+... +.+    ..+.+.+--.+.+      .++|+|+..
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~----~~~~~~~~~~~~~------~~~Dvvf~a   70 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRG----QEIEVEDAETADP------SGLDIALFS   70 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETT----EEEEEEETTTSCC------TTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecC----CceEEEeCCHHHh------ccCCEEEEC
Confidence            79999999999999999998887  8888988776556666554 221    1223321111223      278999988


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      +....+.+.+..+++.|+.+|--+.
T Consensus        71 ~~~~~s~~~a~~~~~~G~~vID~Sa   95 (344)
T 3tz6_A           71 AGSAMSKVQAPRFAAAGVTVIDNSS   95 (344)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CChHHHHHHHHHHHhCCCEEEECCC
Confidence            8888889999999999998776544

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.77  E-value=0.00019  Score=68.28  Aligned_cols=129  Identities=12%  Similarity=0.082  Sum_probs=83.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-Ceee----e---cCHHHHHhccccCCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPV----M---SDLTMVLGSISQSKA  106 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v----~---~dl~~~l~~~~~~~~  106 (257)
                      +.+|+|+| +|.||+.+++.+.+ .+.+ +.++++..  ..+..+..   .. ++..    .   ++++++++      +
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~-~G~~-V~v~~R~~--~~a~~la~---~~~~~~~~~~Dv~d~~~l~~~l~------~   68 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTD-SGIK-VTVACRTL--ESAKKLSA---GVQHSTPISLDVNDDAALDAEVA------K   68 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHT-TTCE-EEEEESSH--HHHHHTTT---TCTTEEEEECCTTCHHHHHHHHT------T
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CcCE-EEEEECCH--HHHHHHHH---hcCCceEEEeecCCHHHHHHHHc------C
Confidence            46899999 59999999998875 6777 44566431  11222221   11 1211    1   23445563      7


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH--HHHHHHHHh
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISA  179 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn--ll~~~a~~l  179 (257)
                      +|+||..+.+.........|++.|++++.- +-..+ ....+.++|+++|+.++...+|.-|+.  ++.+++...
T Consensus        69 ~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~-~~~~~-~~~~l~~aA~~aGv~~i~g~g~~pg~~~~~a~~li~q~  141 (450)
T 1ff9_A           69 HDLVISLIPYTFHATVIKSAIRQKKHVVTT-SYVSP-AMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEV  141 (450)
T ss_dssp             SSEEEECCC--CHHHHHHHHHHHTCEEEES-SCCCH-HHHHTHHHHHHTTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred             CcEEEECCccccchHHHHHHHhCCCeEEEe-ecccH-HHHHHHHHHHHCCCeEEeCCCCcCchHHHHHHHHHHHh
Confidence            999999887666666778889999998753 33444 446788888999999998888866663  345555444

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.76  E-value=0.00021  Score=62.85  Aligned_cols=112  Identities=12%  Similarity=0.159  Sum_probs=67.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCe--eeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |+||+|+| +|.||+.+++.+.... +.++. ++|+..  .....+.    ..|+  ..+.++++++.      ++|+||
T Consensus         6 ~~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~~------~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAG-LGLIGASLALGIKRDHPHYKIV-GYNRSD--RSRDIAL----ERGIVDEATADFKVFAA------LADVII   71 (290)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEE-EECSSH--HHHHHHH----HTTSCSEEESCTTTTGG------GCSEEE
T ss_pred             cceEEEEe-eCHHHHHHHHHHHhCCCCcEEE-EEcCCH--HHHHHHH----HcCCcccccCCHHHhhc------CCCEEE
Confidence            57999999 5999999999887653 56654 566431  1122221    1233  35667777764      699999


Q ss_pred             EcCChHhHHHHHHHHHHc---CCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          112 DFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~---Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      -...|....+.+......   .-.+|+-+++......+.+.++..+.++.++
T Consensus        72 lavp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v  123 (290)
T 3b1f_A           72 LAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFV  123 (290)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEE
T ss_pred             EcCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEE
Confidence            888888777777665443   1235553444333333556555443234443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.74  E-value=0.00036  Score=62.63  Aligned_cols=115  Identities=14%  Similarity=0.146  Sum_probs=75.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      -||+++| .|.||..+++.+.+ .+++++ ++|+..  .....+.    +.|..+.+++.++.+      .+||||-.-.
T Consensus         6 ~kIgfIG-LG~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~G~~~~~s~~e~~~------~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLG-LGNLGTPIAEILLE-AGYELV-VWNRTA--SKAEPLT----KLGATVVENAIDAIT------PGGIVFSVLA   70 (297)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEEE-EC---------CTTT----TTTCEECSSGGGGCC------TTCEEEECCS
T ss_pred             CcEEEEe-cHHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HcCCeEeCCHHHHHh------cCCceeeecc
Confidence            3899999 69999999999874 688876 467431  1112222    457788889999885      7898876543


Q ss_pred             -hHhHHHH----HHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          116 -ASTVYDN----VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       116 -p~~~~~~----~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                       +....+.    +...+..|. +||-++..+++..+++.+.+++.|+..+=+|=+.
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~-iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsG  125 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDG-VHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFA  125 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEEC
T ss_pred             chhhHHHHHHHHHHhhcCCCe-EEEECCCCChHHHHHHHHHHHhcCCceecCCcCC
Confidence             3333332    233344444 4555555668888889999998898888777543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.73  E-value=4.2e-05  Score=66.23  Aligned_cols=98  Identities=9%  Similarity=0.110  Sum_probs=63.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      |+||+|+| +|+||+.+++.+.+. ++    ++. ++|+..  ..+..+.   ...|+.++++++++++      ++|+|
T Consensus         2 ~~~i~iIG-~G~mG~~~a~~l~~~-g~~~~~~V~-~~~r~~--~~~~~~~---~~~g~~~~~~~~e~~~------~aDvV   67 (247)
T 3gt0_A            2 DKQIGFIG-CGNMGMAMIGGMINK-NIVSSNQII-CSDLNT--ANLKNAS---EKYGLTTTTDNNEVAK------NADIL   67 (247)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHT-TSSCGGGEE-EECSCH--HHHHHHH---HHHCCEECSCHHHHHH------HCSEE
T ss_pred             CCeEEEEC-ccHHHHHHHHHHHhC-CCCCCCeEE-EEeCCH--HHHHHHH---HHhCCEEeCChHHHHH------hCCEE
Confidence            57999999 599999999988754 44    544 566531  1122222   1246778889999885      69999


Q ss_pred             EEcCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHH
Q 025154          111 IDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVS  146 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~  146 (257)
                      |-.+.|....+.+....   +.+.-+|.-+.|.+.++++
T Consensus        68 ilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~  106 (247)
T 3gt0_A           68 ILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTE  106 (247)
T ss_dssp             EECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHH
Confidence            98888877777665443   2344445456688865443

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.68  E-value=0.00016  Score=62.47  Aligned_cols=92  Identities=10%  Similarity=0.046  Sum_probs=63.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +|||+|+|+ |.||+.+++.+.....   .++ .++|+...            ..|+.++++++++++      ++|+||
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v-~~~~~~~~------------~~g~~~~~~~~~~~~------~~D~vi   63 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENL-FYYGPSKK------------NTTLNYMSSNEELAR------HCDIIV   63 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGE-EEECSSCC------------SSSSEECSCHHHHHH------HCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeE-EEEeCCcc------------cCceEEeCCHHHHHh------cCCEEE
Confidence            479999995 9999999998875431   444 45665321            135667778888875      699999


Q ss_pred             EcCChHhHHHHHHHHHH--cCCCeEEeCCCCCHHHHH
Q 025154          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVS  146 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~--~Gi~vViGTTG~s~e~~~  146 (257)
                      -...|....+.+.....  .+..+|+-+.|++.+.++
T Consensus        64 ~~v~~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~  100 (262)
T 2rcy_A           64 CAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLE  100 (262)
T ss_dssp             ECSCTTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHH
Confidence            88887777766655433  244566667788876433

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.68  E-value=0.00022  Score=60.76  Aligned_cols=121  Identities=13%  Similarity=0.062  Sum_probs=69.3

Q ss_pred             CCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      .|+..++||+|+| +|.||+.+++.+.. .++++. ++++..  .....+.    ..++.++ +++++++      ++|+
T Consensus        23 ~~~~~~~~I~iiG-~G~~G~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~~------~~Dv   86 (215)
T 2vns_A           23 KVPDEAPKVGILG-SGDFARSLATRLVG-SGFKVV-VGSRNP--KRTARLF----PSAAQVT-FQEEAVS------SPEV   86 (215)
T ss_dssp             ------CCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EEESSH--HHHHHHS----BTTSEEE-EHHHHTT------SCSE
T ss_pred             CCCCCCCEEEEEc-cCHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCcee-cHHHHHh------CCCE
Confidence            3555578999999 59999999998875 467765 466531  1122222    2255555 7777774      7999


Q ss_pred             EEEcCChHhHHHHH--HHHHHcCCCeEEeCCCCCHHHH-------HHHHHHhhhcCceEEEccCchHHH
Q 025154          110 VIDFTDASTVYDNV--KQATAFGMRSVVYVPHIQLETV-------SALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       110 vIDFT~p~~~~~~~--~~a~~~Gi~vViGTTG~s~e~~-------~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      ||..+.+....+.+  .... .+..+|.-++|.+.+.+       +.+++...  +.+++.+-|+--+.
T Consensus        87 Vi~av~~~~~~~v~~l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~--~~~vv~~~n~~~~~  152 (215)
T 2vns_A           87 IFVAVFREHYSSLCSLSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP--TCTVVKAFNVISAW  152 (215)
T ss_dssp             EEECSCGGGSGGGGGGHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT--TSEEEEECTTBCHH
T ss_pred             EEECCChHHHHHHHHHHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC--CCeEEeccccccHh
Confidence            99877664432222  2233 56667766778765432       22333332  24677666764443

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.67  E-value=0.0002  Score=64.61  Aligned_cols=98  Identities=11%  Similarity=0.064  Sum_probs=64.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC----cEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG----MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~----~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      +|||+|+|+ |.||..++..+.+. +    .++. ++++......+..+.    ..|+.+.++..+++.      .+|+|
T Consensus        22 ~mkI~iIG~-G~mG~ala~~L~~~-G~~~~~~V~-v~~r~~~~~~~~~l~----~~G~~~~~~~~e~~~------~aDvV   88 (322)
T 2izz_A           22 SMSVGFIGA-GQLAFALAKGFTAA-GVLAAHKIM-ASSPDMDLATVSALR----KMGVKLTPHNKETVQ------HSDVL   88 (322)
T ss_dssp             CCCEEEESC-SHHHHHHHHHHHHT-TSSCGGGEE-EECSCTTSHHHHHHH----HHTCEEESCHHHHHH------HCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCCcceEE-EECCCccHHHHHHHH----HcCCEEeCChHHHhc------cCCEE
Confidence            579999995 99999999988754 4    5554 566532101222232    346777788888875      69999


Q ss_pred             EEcCChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHH
Q 025154          111 IDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETV  145 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~  145 (257)
                      |-...|....+.+.....   .+.-+|.-++|++.+++
T Consensus        89 ilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l  126 (322)
T 2izz_A           89 FLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSI  126 (322)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHH
Confidence            988888877777765433   24444444568886543

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.65  E-value=6.6e-05  Score=69.01  Aligned_cols=95  Identities=22%  Similarity=0.199  Sum_probs=62.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhcCC-----CCCCeeeec--C
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCDME-----QPLEIPVMS--D   93 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~~~g~~-----~~~gv~v~~--d   93 (257)
                      +||+|+|+ |++|+.+++++.++  |+++|+++-|..             ..|+-.+++.-.+     ....+.++.  |
T Consensus         1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   79 (332)
T 1hdg_O            1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence            58999998 99999999999988  999999987731             1122111100000     001244442  5


Q ss_pred             HHHH-HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEE
Q 025154           94 LTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (257)
Q Consensus        94 l~~~-l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vVi  135 (257)
                      ++++ ..+    .++|+|++.|......+.+...++.|.. +||
T Consensus        80 p~~l~w~~----~~vDvV~~atg~~~s~e~a~~~l~aGakkvVI  119 (332)
T 1hdg_O           80 PSKLPWKD----LGVDFVIESTGVFRNREKAELHLQAGAKKVII  119 (332)
T ss_dssp             GGGSCHHH----HTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             hHHCcccc----cCCCEEEECCccchhHHHHHHHHHcCCcEEEE
Confidence            5544 111    2689999988877788899999999983 444

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.63  E-value=0.00028  Score=62.87  Aligned_cols=115  Identities=13%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .++||+|+| +|.||+.+++.+.+ .++++. ++|+..  ..+..+.    ..|+.. +++++++++      .+|+||-
T Consensus         6 ~~~~I~iIG-~G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~e~~~------~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVG-LGSMGMGAARSCLR-AGLSTW-GADLNP--QACANLL----AEGACGAAASAREFAG------VVDALVI   70 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCSEEESSSTTTTT------TCSEEEE
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HcCCccccCCHHHHHh------cCCEEEE
Confidence            357999999 59999999998875 577765 456531  1122222    234555 778888874      7999987


Q ss_pred             cCChHh-HHHHH---H---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          113 FTDAST-VYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       113 FT~p~~-~~~~~---~---~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                      ...+.. ....+   .   ..++.|.-+ +-++..+....+++.+..++.|+.++-+|-
T Consensus        71 ~vp~~~~~~~v~~~~~~l~~~l~~g~iv-v~~st~~~~~~~~~~~~~~~~g~~~~~~pv  128 (303)
T 3g0o_A           71 LVVNAAQVRQVLFGEDGVAHLMKPGSAV-MVSSTISSADAQEIAAALTALNLNMLDAPV  128 (303)
T ss_dssp             CCSSHHHHHHHHC--CCCGGGSCTTCEE-EECSCCCHHHHHHHHHHHHTTTCEEEECCE
T ss_pred             ECCCHHHHHHHHhChhhHHhhCCCCCEE-EecCCCCHHHHHHHHHHHHHcCCeEEeCCC
Confidence            765443 33332   1   223345444 444545666667777777766776665553

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.61  E-value=0.00067  Score=64.84  Aligned_cols=123  Identities=9%  Similarity=0.050  Sum_probs=75.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +|||+|+|+ |.||+.++..+.. .++++ .++|+..  ..+..+.. .....++..+.|++++++.+   .++|+||-.
T Consensus         2 ~m~IgvIG~-G~mG~~lA~~La~-~G~~V-~v~dr~~--~~~~~l~~~~~~g~gi~~~~~~~e~v~~l---~~aDvVila   73 (482)
T 2pgd_A            2 QADIALIGL-AVMGQNLILNMND-HGFVV-CAFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSKL---KKPRRIILL   73 (482)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHHB---CSSCEEEEC
T ss_pred             CCeEEEECh-HHHHHHHHHHHHH-CCCeE-EEEeCCH--HHHHHHHhccccCCCeEEeCCHHHHHhhc---cCCCEEEEe
Confidence            479999995 9999999998875 56775 4667531  22222321 00004577788999887411   269999977


Q ss_pred             CChH-hHHHHHHH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          114 TDAS-TVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       114 T~p~-~~~~~~~~---a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      ..+. .+.+.+..   .++.|..+|..+++... +..++.+..++.|+.++-+|++.
T Consensus        74 Vp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~-~~~~l~~~l~~~g~~~v~~pv~g  129 (482)
T 2pgd_A           74 VKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYR-DTMRRCRDLKDKGILFVGSGVSG  129 (482)
T ss_dssp             SCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEEEES
T ss_pred             CCChHHHHHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHHHHcCCeEeCCCCCC
Confidence            6553 44444433   34456666666677644 33445555555567776666643

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.58  E-value=0.00057  Score=65.22  Aligned_cols=122  Identities=12%  Similarity=0.093  Sum_probs=74.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++||+|+|+ |.||+.+++.+.. .++++ .++|+..  ..+..+.......++..+.|++++++.+   .++|+||-..
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~-~G~~V-~v~dr~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~l---~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVES-RGYTV-AIYNRTT--SKTEEVFKEHQDKNLVFTKTLEEFVGSL---EKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSSH--HHHHHHHHHTTTSCEEECSSHHHHHHTB---CSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHh-CCCEE-EEEcCCH--HHHHHHHHhCcCCCeEEeCCHHHHHhhc---cCCCEEEEEc
Confidence            479999995 9999999998875 56775 4666531  1122222100012677788999987510   1499999777


Q ss_pred             Ch-HhHHHHHHH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          115 DA-STVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       115 ~p-~~~~~~~~~---a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      .+ ..+.+.+..   .++.|..+|..+++... ..+++.+..++.|+.++-+|++
T Consensus        77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~-~~~~l~~~l~~~g~~~v~~pv~  130 (474)
T 2iz1_A           77 QAGAATDATIKSLLPLLDIGDILIDGGNTHFP-DTMRRNAELADSGINFIGTGVS  130 (474)
T ss_dssp             CTTHHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHTTTSSCEEEEEEEC
T ss_pred             cCchHHHHHHHHHHhhCCCCCEEEECCCCCHH-HHHHHHHHHHHCCCeEECCCCC
Confidence            65 344444443   23456666666667643 3455666666667766656654

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.55  E-value=0.00088  Score=58.16  Aligned_cols=112  Identities=10%  Similarity=0.070  Sum_probs=68.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecC---HHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~D  108 (257)
                      |||.|+|++|.+|+.+++.+.+.++.++++...+..   ....+.    ..++.+    ..|   +++++      .++|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~---~~~~~~----~~~v~~~~~D~~d~~~l~~~~------~~~d   67 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVE---KVPDDW----RGKVSVRQLDYFNQESMVEAF------KGMD   67 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGG---GSCGGG----BTTBEEEECCTTCHHHHHHHT------TTCS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHH---HHHHhh----hCCCEEEEcCCCCHHHHHHHH------hCCC
Confidence            689999999999999999987666888887765321   111111    123322    123   34455      3799


Q ss_pred             EEEEcCCh--------HhHHHHHHHHHHcCCC-eE-EeCCC------CC-HHHHHHHHHHhhhcCceEE
Q 025154          109 VVIDFTDA--------STVYDNVKQATAFGMR-SV-VYVPH------IQ-LETVSALSAFCDKASMGCL  160 (257)
Q Consensus       109 VvIDFT~p--------~~~~~~~~~a~~~Gi~-vV-iGTTG------~s-~e~~~~L~~~a~~~gipvl  160 (257)
                      +||....+        ..+...+..|.+.|+. +| +.+.|      +. ......+++..++.|+++.
T Consensus        68 ~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~  136 (289)
T 3e48_A           68 TVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYADQHNNPFHMSPYFGYASRLLSTSGIDYT  136 (289)
T ss_dssp             EEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESCCSTTCCSTTHHHHHHHHHHHHHHCCEEE
T ss_pred             EEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccCCCCCCCCccchhHHHHHHHHHHcCCCEE
Confidence            99987642        4456677888888965 44 22222      11 1122356666666677654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.55  E-value=6.9e-05  Score=67.76  Aligned_cols=122  Identities=11%  Similarity=0.162  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-------CCCCeeeecCHHHHHhccccCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~-------~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      .++||+|+|+ |.||..++..+.+ .+.++. ++++.  ...+..+...+       ...++.+++++++ ++      .
T Consensus        13 ~~~kI~iIG~-G~mG~ala~~L~~-~G~~V~-~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~------~   80 (335)
T 1z82_A           13 MEMRFFVLGA-GSWGTVFAQMLHE-NGEEVI-LWARR--KEIVDLINVSHTSPYVEESKITVRATNDLEE-IK------K   80 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSS--HHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CC------T
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCC--HHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hc------C
Confidence            4689999995 9999999998874 467754 45542  11112221100       0013567788877 53      7


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh---cCceEEEccCchH
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK---ASMGCLIAPTLSI  167 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~---~gipvl~spNfSl  167 (257)
                      +|+||-+..+..+.+.+......+..+|.-+.|++.++.+.+.+...+   ...+++..||+..
T Consensus        81 aDvVil~vk~~~~~~v~~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~  144 (335)
T 1z82_A           81 EDILVIAIPVQYIREHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAE  144 (335)
T ss_dssp             TEEEEECSCGGGHHHHHTTCSSCCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHH
T ss_pred             CCEEEEECCHHHHHHHHHHhCcCCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHH
Confidence            999997777766666554322245556665657765433333333221   1357888999865

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.54  E-value=0.00031  Score=67.24  Aligned_cols=122  Identities=10%  Similarity=0.056  Sum_probs=71.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C---CCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E---QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~---~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |||+|+|+ |.||+.++..+.. .++++ .++|+..  ..+..+... +   ...++..+.|++++++.+   .++|+||
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~-~G~~V-~v~dr~~--~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l---~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAE-KGFKV-AVFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEECh-HHHHHHHHHHHHH-CCCEE-EEEeCCH--HHHHHHHHhcCCCCCCCCeEEECCHHHHHhcc---cCCCEEE
Confidence            69999995 9999999998875 56775 4666531  112222210 0   011266788998887511   1599999


Q ss_pred             EcCChH-hHHHHHH---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          112 DFTDAS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       112 DFT~p~-~~~~~~~---~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      -...+. .+.+.+.   ..++.|..+|..++|... ..+++.+..++.|+..+-+|+++
T Consensus        74 laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~-~~~~l~~~l~~~g~~~v~~pv~g  131 (478)
T 1pgj_A           74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFK-DQGRRAQQLEAAGLRFLGMGISG  131 (478)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHH-HHHHHHHHHHTTTCEEEEEEEES
T ss_pred             EecCChHHHHHHHHHHHhhCCCCCEEEECCCCChH-HHHHHHHHHHHCCCeEEEeeccC
Confidence            776553 4444443   334456666666677643 33445555555566655555543

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.53  E-value=0.00058  Score=65.45  Aligned_cols=123  Identities=10%  Similarity=0.053  Sum_probs=74.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +++||+|+|+ |.||+.+++.+.+ .+++++ ++++..  ..+..+.......++..++|++++++.+   .++|+||-.
T Consensus        14 ~~~~IgvIGl-G~MG~~lA~~La~-~G~~V~-v~~r~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~l---~~aDvVil~   85 (480)
T 2zyd_A           14 SKQQIGVVGM-AVMGRNLALNIES-RGYTVS-IFNRSR--EKTEEVIAENPGKKLVPYYTVKEFVESL---ETPRRILLM   85 (480)
T ss_dssp             -CBSEEEECC-SHHHHHHHHHHHT-TTCCEE-EECSSH--HHHHHHHHHSTTSCEEECSSHHHHHHTB---CSSCEEEEC
T ss_pred             CCCeEEEEcc-HHHHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHHhhCCCCCeEEeCCHHHHHhCC---CCCCEEEEE
Confidence            3578999995 9999999998874 577764 566431  1122222100002677788999887510   139999877


Q ss_pred             CCh-HhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          114 TDA-STVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       114 T~p-~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      ..+ ..+.+.+....   +.|.-+|..++|... ..+++.+..++.|+.++-+|++
T Consensus        86 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~-~t~~l~~~l~~~g~~~v~~pv~  140 (480)
T 2zyd_A           86 VKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQ-DTIRRNRELSAEGFNFIGTGVS  140 (480)
T ss_dssp             SCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHHHHCCCCeeCCccc
Confidence            655 35555554433   345666667777643 3344555555556766655554

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.52  E-value=0.00089  Score=60.51  Aligned_cols=102  Identities=17%  Similarity=0.138  Sum_probs=63.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCe--eeecCHHH-HHhccccCCCccE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTM-VLGSISQSKARAV  109 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~dl~~-~l~~~~~~~~~DV  109 (257)
                      ++||+|+| .|.||+.+++.+.. .++  +++ ++|+..  .......    ..|+  ..++++++ ++.      ++|+
T Consensus        33 ~~kI~IIG-~G~mG~slA~~l~~-~G~~~~V~-~~dr~~--~~~~~a~----~~G~~~~~~~~~~~~~~~------~aDv   97 (314)
T 3ggo_A           33 MQNVLIVG-VGFMGGSFAKSLRR-SGFKGKIY-GYDINP--ESISKAV----DLGIIDEGTTSIAKVEDF------SPDF   97 (314)
T ss_dssp             CSEEEEES-CSHHHHHHHHHHHH-TTCCSEEE-EECSCH--HHHHHHH----HTTSCSEEESCTTGGGGG------CCSE
T ss_pred             CCEEEEEe-eCHHHHHHHHHHHh-CCCCCEEE-EEECCH--HHHHHHH----HCCCcchhcCCHHHHhhc------cCCE
Confidence            37999999 59999999998875 456  655 466531  1112121    2344  35678887 664      7999


Q ss_pred             EEEcCChHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHH
Q 025154          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAF  151 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~  151 (257)
                      ||....+....+.+......  .-.+|+-+++......+.+++.
T Consensus        98 Vilavp~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~  141 (314)
T 3ggo_A           98 VMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENI  141 (314)
T ss_dssp             EEECSCGGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHh
Confidence            99888887777666555432  2235555555443334555544

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.49  E-value=9.7e-06  Score=71.64  Aligned_cols=93  Identities=9%  Similarity=0.028  Sum_probs=51.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ||||+|+|+ |+||+.+++.+...  ++++.++|+..  .....+..   ..++ .+.|++++++      ++|+||-.+
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~--~~v~~v~~~~~--~~~~~~~~---~~g~-~~~~~~~~~~------~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR--YEIGYILSRSI--DRARNLAE---VYGG-KAATLEKHPE------LNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHH---HTCC-CCCSSCCCCC---------CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc--CcEEEEEeCCH--HHHHHHHH---HcCC-ccCCHHHHHh------cCCEEEEeC
Confidence            579999995 99999999987654  67766777531  11222221   2344 5667766663      689999888


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC-CCCHH
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLE  143 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e  143 (257)
                      .|....+.+......+. +|+-++ +++.+
T Consensus        67 ~~~~~~~v~~~l~~~~~-ivi~~s~~~~~~   95 (276)
T 2i76_A           67 PDRYIKTVANHLNLGDA-VLVHCSGFLSSE   95 (276)
T ss_dssp             CTTTHHHHHTTTCCSSC-CEEECCSSSCGG
T ss_pred             ChHHHHHHHHHhccCCC-EEEECCCCCcHH
Confidence            77776666544332343 444444 55443

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.49  E-value=0.00027  Score=64.40  Aligned_cols=120  Identities=14%  Similarity=0.228  Sum_probs=72.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCCCCCCeeeecCHHHHHhccccCCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DMEQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~----------g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      ||+|+|+ |.||..++..+. ..++++. ++++..  ..+..+.          +..-+.++.+++|+++++.      +
T Consensus        17 kI~iIG~-G~mG~~la~~L~-~~G~~V~-~~~r~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~   85 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLS-KKCREVC-VWHMNE--EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------G   85 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHT-TTEEEEE-EECSCH--HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------T
T ss_pred             eEEEECC-CHHHHHHHHHHH-hCCCEEE-EEECCH--HHHHHHHHcCcccccccccccccceeeeCCHHHHHc------C
Confidence            9999995 999999998876 4566654 455421  1111111          0000124666788888774      7


Q ss_pred             ccEEEEcCChHhHHHHHHH-------HHHc-CCCeEEeCCCCCHHHHHHHHHHhhhc-C---ceEEEccCchH
Q 025154          107 RAVVIDFTDASTVYDNVKQ-------ATAF-GMRSVVYVPHIQLETVSALSAFCDKA-S---MGCLIAPTLSI  167 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~-------a~~~-Gi~vViGTTG~s~e~~~~L~~~a~~~-g---ipvl~spNfSl  167 (257)
                      +|+||-...+....+.+..       .+.. +..+|.-+.|++.+..+.+.+..++. +   .+++..||+.-
T Consensus        86 aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~  158 (366)
T 1evy_A           86 AEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAI  158 (366)
T ss_dssp             CSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHH
T ss_pred             CCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHH
Confidence            9999977776555544433       3445 77777666587654332333332221 2   57888999875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.48  E-value=0.0024  Score=52.13  Aligned_cols=132  Identities=13%  Similarity=0.059  Sum_probs=75.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---cCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (257)
                      ..+|+|+|+ |+||+.+++.+.+..+.+++ ++|...  .....+.    ..|+.+ +   .+.+. +.+...-.++|++
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~-vid~~~--~~~~~~~----~~g~~~~~gd~~~~~~-l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISL-GIEIRE--EAAQQHR----SEGRNVISGDATDPDF-WERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEE-EEESCH--HHHHHHH----HTTCCEEECCTTCHHH-HHTBCSCCCCCEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEE-EEECCH--HHHHHHH----HCCCCEEEcCCCCHHH-HHhccCCCCCCEE
Confidence            468999995 99999999988653267766 456431  1111221    123332 2   23332 2210000368999


Q ss_pred             EEcCCh-HhHHHHHHHHHHcC-CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhc
Q 025154          111 IDFTDA-STVYDNVKQATAFG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (257)
Q Consensus       111 IDFT~p-~~~~~~~~~a~~~G-i~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~  180 (257)
                      |..+.. +.....+..+.+.+ ...|+..+ -+.+..+.+    ++.|+..+++|....|-.+.+.+.+.+.
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l----~~~G~~~vi~p~~~~a~~l~~~~~~~~~  176 (183)
T 3c85_A          110 LLAMPHHQGNQTALEQLQRRNYKGQIAAIA-EYPDQLEGL----LESGVDAAFNIYSEAGSGFARHVCKQLE  176 (183)
T ss_dssp             EECCSSHHHHHHHHHHHHHTTCCSEEEEEE-SSHHHHHHH----HHHTCSEEEEHHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCChHHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHHH----HHcCCCEEEchHHHHHHHHHHHHHHhcC
Confidence            987753 33344445555555 33333333 234444444    3457888999999888888887777764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=0.00088  Score=55.95  Aligned_cols=86  Identities=19%  Similarity=0.259  Sum_probs=53.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------ecCHHHHHhccccCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~  106 (257)
                      .|+||.|+|++|.+|+.+++.+.+ .+.++++...+..   ....+     ..++.+       .++++++++      +
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~---~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~------~   67 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALN-RGFEVTAVVRHPE---KIKIE-----NEHLKVKKADVSSLDEVCEVCK------G   67 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHT-TTCEEEEECSCGG---GCCCC-----CTTEEEECCCTTCHHHHHHHHT------T
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHH-CCCEEEEEEcCcc---cchhc-----cCceEEEEecCCCHHHHHHHhc------C
Confidence            478999999999999999998875 4688876543211   00000     012221       223445553      7


Q ss_pred             ccEEEEcCCh------------HhHHHHHHHHHHcCC-CeE
Q 025154          107 RAVVIDFTDA------------STVYDNVKQATAFGM-RSV  134 (257)
Q Consensus       107 ~DVvIDFT~p------------~~~~~~~~~a~~~Gi-~vV  134 (257)
                      +|+||....+            ......++.|.+.|+ .+|
T Consensus        68 ~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  108 (227)
T 3dhn_A           68 ADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFL  108 (227)
T ss_dssp             CSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            9999987543            234556677777775 344

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.43  E-value=0.0013  Score=57.56  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=61.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCee--eecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      |+||+|+| .|.||+.+++.+.. .++  +++ ++|+..  .....+.    ..|+.  .++|+++++.     .++|+|
T Consensus         1 m~~I~iIG-~G~mG~~~a~~l~~-~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~~-----~~aDvV   66 (281)
T 2g5c_A            1 MQNVLIVG-VGFMGGSFAKSLRR-SGFKGKIY-GYDINP--ESISKAV----DLGIIDEGTTSIAKVED-----FSPDFV   66 (281)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHH-TTCCSEEE-EECSCH--HHHHHHH----HTTSCSEEESCGGGGGG-----TCCSEE
T ss_pred             CcEEEEEe-cCHHHHHHHHHHHh-cCCCcEEE-EEeCCH--HHHHHHH----HCCCcccccCCHHHHhc-----CCCCEE
Confidence            57999999 59999999998875 455  654 466531  1111111    22332  3567777663     168999


Q ss_pred             EEcCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHh
Q 025154          111 IDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFC  152 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a  152 (257)
                      |..+.|....+.+....   +.+. +|+-+++......+.+.+..
T Consensus        67 ilavp~~~~~~v~~~l~~~l~~~~-iv~~~~~~~~~~~~~l~~~l  110 (281)
T 2g5c_A           67 MLSSPVRTFREIAKKLSYILSEDA-TVTDQGSVKGKLVYDLENIL  110 (281)
T ss_dssp             EECSCHHHHHHHHHHHHHHSCTTC-EEEECCSCCTHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHhhCCCCc-EEEECCCCcHHHHHHHHHhc
Confidence            98888887776665443   3344 44433333333334455443

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.40  E-value=0.0001  Score=67.78  Aligned_cols=141  Identities=17%  Similarity=0.221  Sum_probs=75.5

Q ss_pred             eeeccccccccccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhh
Q 025154            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGM   78 (257)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-------~eLvg~vd~~~~--g~-d~g~   78 (257)
                      |-.-||.-.|+--.+        +..|+||+|+|+ |.||..++..+.+. +       .++. ++++...  ++ .+..
T Consensus         3 ~~~~~~~~~~~~~~~--------~~~~~kI~iIGa-G~mG~alA~~L~~~-G~~~~~~~~~V~-~~~r~~~~~~~~~~~~   71 (375)
T 1yj8_A            3 HHHHHHMYRNLFDKL--------KDGPLKISILGS-GNWASAISKVVGTN-AKNNYLFENEVR-MWIRDEFVNGERMVDI   71 (375)
T ss_dssp             -------CCSHHHHH--------HHSCBCEEEECC-SHHHHHHHHHHHHH-HHHCTTBCSCEE-EECCSCC---CCHHHH
T ss_pred             cchhHHHHHHHHhcC--------ccCCCEEEEECc-CHHHHHHHHHHHHc-CCccCCCCCeEE-EEECChhhhhHHHHHH
Confidence            334567666653211        123679999995 99999999988753 3       5544 4554311  00 1111


Q ss_pred             hh----------cCCCCCCeeeecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHH-------cCCCeEEeCCCCC
Q 025154           79 VC----------DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-------FGMRSVVYVPHIQ  141 (257)
Q Consensus        79 ~~----------g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~-------~Gi~vViGTTG~s  141 (257)
                      +.          +..-+.++.+++|+++++.      ++|+||-+..+....+.+.....       .+..+|.-+.|++
T Consensus        72 l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~~------~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           72 INNKHENTKYLKGVPLPHNIVAHSDLASVIN------DADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             HHHHCBCTTTSTTCBCCTTEEEESSTHHHHT------TCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             HHhcCcccccCCcccCcCCeEEECCHHHHHc------CCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence            11          1000124667788888774      79999977776665555554332       2444555555876


Q ss_pred             HH-----HH-HHHHHHhhhcCceEEEccCchH
Q 025154          142 LE-----TV-SALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       142 ~e-----~~-~~L~~~a~~~gipvl~spNfSl  167 (257)
                      .+     .. +.+.+..- ...+++..||++-
T Consensus       146 ~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~a~  176 (375)
T 1yj8_A          146 VKKNQMKLCSNYISDFLN-IPCSALSGANIAM  176 (375)
T ss_dssp             EETTEEECHHHHHHHHSS-SCEEEEECSCCHH
T ss_pred             cCCccccCHHHHHHHHcC-CCEEEEeCCchHH
Confidence            41     11 22333211 2367888999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.40  E-value=0.00066  Score=60.38  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=26.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |.||+|+|+ |.||..++..+.. .+++++ ++|+
T Consensus        15 ~~~I~VIG~-G~mG~~iA~~la~-~G~~V~-~~d~   46 (302)
T 1f0y_A           15 VKHVTVIGG-GLMGAGIAQVAAA-TGHTVV-LVDQ   46 (302)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEEC
Confidence            568999996 9999999998774 578865 5664

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.38  E-value=0.0015  Score=56.87  Aligned_cols=99  Identities=13%  Similarity=0.188  Sum_probs=62.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |||+|+|+ |.||+.+++.+.. .+++++. +|+..  .....+.    +.|+  .++++++++ .      ++|+||..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~~~~--~~~~~~~----~~g~~~~~~~~~~~~-~------~~D~vi~a   64 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRR-RGHYLIG-VSRQQ--STCEKAV----ERQLVDEAGQDLSLL-Q------TAKIIFLC   64 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGGGG-T------TCSEEEEC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----hCCCCccccCCHHHh-C------CCCEEEEE
Confidence            58999995 9999999998875 4677654 56431  1122221    2233  246777777 5      79999988


Q ss_pred             CChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHH
Q 025154          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAF  151 (257)
Q Consensus       114 T~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~  151 (257)
                      +.|....+.+.....   .+. +|+-+.+.+....+.+.+.
T Consensus        65 v~~~~~~~~~~~l~~~~~~~~-~vv~~~~~~~~~~~~~~~~  104 (279)
T 2f1k_A           65 TPIQLILPTLEKLIPHLSPTA-IVTDVASVKTAIAEPASQL  104 (279)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTC-EEEECCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCC-EEEECCCCcHHHHHHHHHH
Confidence            888777776665433   243 4555566666555555443

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=97.37  E-value=0.00018  Score=66.33  Aligned_cols=97  Identities=22%  Similarity=0.200  Sum_probs=60.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcchhhhh--cC---CCCCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGEDIGMVC--DM---EQPLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~d~g~~~--g~---~~~~gv~v~--   91 (257)
                      |+||||+|+ ||+||.+.+++.++   +++++|++-|..             ..|+--+++.  +.   .....+.++  
T Consensus         1 ~ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~   79 (335)
T 1obf_O            1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN   79 (335)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred             CcEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEc
Confidence            579999996 99999999998887   899999998731             0111000000  00   000123444  


Q ss_pred             cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEE
Q 025154           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (257)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vVi  135 (257)
                      .|++++-=   .+.++|+|++.|-.....+.+..+++.|.. +|+
T Consensus        80 ~dp~~~~w---~~~gvDiV~estG~f~s~e~a~~h~~aGakkVvi  121 (335)
T 1obf_O           80 RNPAQLPW---GALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII  121 (335)
T ss_dssp             SCGGGSCT---TTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE
T ss_pred             CCcccCCc---cccCCCEEEEccCccccHHHHHHHHHcCCCEEEE
Confidence            24444310   013799999887666777888888888876 444

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00083  Score=63.03  Aligned_cols=137  Identities=12%  Similarity=0.100  Sum_probs=73.9

Q ss_pred             ccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCC-c-----EEEEEEecC--CCCcchhh-----------hhcCCCC
Q 025154           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-M-----EVAGAIDSH--SVGEDIGM-----------VCDMEQP   85 (257)
Q Consensus        25 ~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~-----eLvg~vd~~--~~g~d~g~-----------~~g~~~~   85 (257)
                      .+++....+.|+||+|+|+ |.+|.+++..+.+... +     .-|-.+.+.  ..++...+           +-+..-+
T Consensus        24 ~~~~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp  102 (391)
T 4fgw_A           24 SSVSLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLP  102 (391)
T ss_dssp             ---------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCC
T ss_pred             ccccccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCC
Confidence            3444555667899999996 9999999998875321 0     112223221  11111111           1122123


Q ss_pred             CCeeeecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCHHH------HHHHHHHhhhcC
Q 025154           86 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLET------VSALSAFCDKAS  156 (257)
Q Consensus        86 ~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~e~------~~~L~~~a~~~g  156 (257)
                      .++.+++|++++++      ++|++|-..+.....+.++..   +..+.++|..+=|+....      -+.+.+.-. ..
T Consensus       103 ~~i~~t~dl~~al~------~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~  175 (391)
T 4fgw_A          103 DNLVANPDLIDSVK------DVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQ  175 (391)
T ss_dssp             SSEEEESCHHHHHT------TCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CE
T ss_pred             CCcEEeCCHHHHHh------cCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-cc
Confidence            46778999999995      799988444444444444443   345677888777874211      122333211 12


Q ss_pred             ceEEEccCchHHH
Q 025154          157 MGCLIAPTLSIGS  169 (257)
Q Consensus       157 ipvl~spNfSlGv  169 (257)
                      +.++-.|||+--|
T Consensus       176 ~~vLsGPs~A~EV  188 (391)
T 4fgw_A          176 CGALSGANIATEV  188 (391)
T ss_dssp             EEEEECSCCHHHH
T ss_pred             ceeccCCchHHHh
Confidence            6678889998766

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=97.34  E-value=0.00027  Score=64.66  Aligned_cols=90  Identities=18%  Similarity=0.123  Sum_probs=58.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvID  112 (257)
                      |||+|+||+|++|+.+++.+.  ..|..+++........|+... +.+    ..+.+++ +.++ +       ++|+|++
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~-~~g----~~i~v~~~~~~~-~-------~~DvV~~   67 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA-FRG----EEIPVEPLPEGP-L-------PVDLVLA   67 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE-ETT----EEEEEEECCSSC-C-------CCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE-EcC----ceEEEEeCChhh-c-------CCCEEEE
Confidence            689999999999999999988  556666654333222232221 110    1233322 2111 1       4899997


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      .+......+.+..+++.|..+|.-+.
T Consensus        68 a~g~~~s~~~a~~~~~~G~~vId~s~   93 (331)
T 2yv3_A           68 SAGGGISRAKALVWAEGGALVVDNSS   93 (331)
T ss_dssp             CSHHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CCCccchHHHHHHHHHCCCEEEECCC
Confidence            77777888999999999987765443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.32  E-value=0.0031  Score=59.78  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--------------CCCCeeeecCHHHHHh
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--------------QPLEIPVMSDLTMVLG   99 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~--------------~~~gv~v~~dl~~~l~   99 (257)
                      .+|||+|+| +|.||..++..+++  ++++++ +|...  ..+..+....              ...++.+++|+++++.
T Consensus        35 ~~mkIaVIG-lG~mG~~lA~~La~--G~~V~~-~D~~~--~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           35 EFMKITISG-TGYVGLSNGVLIAQ--NHEVVA-LDIVQ--AKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHc--CCeEEE-EecCH--HHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            368999999 59999999987764  888775 66421  1111111000              0125677889988885


Q ss_pred             ccccCCCccEEEEcCChH-----------hHH---HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          100 SISQSKARAVVIDFTDAS-----------TVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~p~-----------~~~---~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                            ++|++|..+...           .+.   +.+.. ++.|.-+|..+| ..+...+++.+...+  ..++++|-|
T Consensus       109 ------~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~ST-v~pgtt~~l~~~l~~--~~v~~sPe~  178 (432)
T 3pid_A          109 ------NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKST-IPVGFTRDIKERLGI--DNVIFSPEF  178 (432)
T ss_dssp             ------TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSC-CCTTHHHHHHHHHTC--CCEEECCCC
T ss_pred             ------CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCC-CChHHHHHHHHHHhh--ccEeecCcc
Confidence                  799988775322           222   22333 555655555444 333344455555555  467889987

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.32  E-value=0.0011  Score=59.78  Aligned_cols=123  Identities=12%  Similarity=0.119  Sum_probs=71.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhhh----------cCCCCCCeeeecCH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMVC----------DMEQPLEIPVMSDL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-------~eLvg~vd~~~~--g~-d~g~~~----------g~~~~~gv~v~~dl   94 (257)
                      +|||+|+|+ |.||..++..+.+. +       .++ -++++...  ++ ....+.          +..-+.++.+++|+
T Consensus         8 ~mkI~iIG~-G~mG~~~a~~l~~~-g~~~~~~~~~V-~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVGS-GNWGSAIAKIVGGN-AAQLAQFDPRV-TMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHH-HHHCTTEEEEE-EEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhc-CCcccCCCCeE-EEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCH
Confidence            379999995 99999999988753 3       554 45554311  00 111111          00001245667888


Q ss_pred             HHHHhccccCCCccEEEEcCChHhHHHHHHHHHH---cCCCeEEeCCCCCH-----HHH-HHHHHHhhhcCceEEEccCc
Q 025154           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL-----ETV-SALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~-----e~~-~~L~~~a~~~gipvl~spNf  165 (257)
                      ++++.      ++|+||-...+....+.+.....   .+..+|.-++|++.     +.. +.+.+..- ...+++..||+
T Consensus        85 ~~~~~------~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~  157 (354)
T 1x0v_A           85 VQAAE------DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGANI  157 (354)
T ss_dssp             HHHHT------TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSCC
T ss_pred             HHHHc------CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCCc
Confidence            88774      79999977777666665554332   35556666667752     111 22333211 12678889998


Q ss_pred             hH
Q 025154          166 SI  167 (257)
Q Consensus       166 Sl  167 (257)
                      +-
T Consensus       158 a~  159 (354)
T 1x0v_A          158 AS  159 (354)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.32  E-value=0.0021  Score=61.03  Aligned_cols=120  Identities=10%  Similarity=0.137  Sum_probs=69.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCC---------------CCCCeeeecCHHHHHh
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME---------------QPLEIPVMSDLTMVLG   99 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~-g~~---------------~~~gv~v~~dl~~~l~   99 (257)
                      |||+|+|+ |.||..++..+++ .+++++ ++|...  ..+..+. +..               ....+.+++|+++++.
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~-~G~~V~-~~D~~~--~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~   77 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAE-LGANVR-CIDTDR--NKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP   77 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHh-cCCEEE-EEECCH--HHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh
Confidence            79999995 9999999998874 578877 566431  0111111 000               0124667889998875


Q ss_pred             ccccCCCccEEEEcCChH----------hHHHHH---HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh--------cCce
Q 025154          100 SISQSKARAVVIDFTDAS----------TVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDK--------ASMG  158 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~p~----------~~~~~~---~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~--------~gip  158 (257)
                            ++|++|-...+.          .+.+.+   ...++.|.-+|..+| ..+...+++.+..++        ...+
T Consensus        78 ------~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgt~~~l~~~l~~~~~~~~~~~d~~  150 (450)
T 3gg2_A           78 ------EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST-VPVGSYRLIRKAIQEELDKREVLIDFD  150 (450)
T ss_dssp             ------GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC-CCTTHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred             ------cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee-CCCcchHHHHHHHHHhccccCcCccee
Confidence                  699988765322          333333   333445666666555 322222233222221        2378


Q ss_pred             EEEccCchH
Q 025154          159 CLIAPTLSI  167 (257)
Q Consensus       159 vl~spNfSl  167 (257)
                      ++++|.|.-
T Consensus       151 v~~~Pe~a~  159 (450)
T 3gg2_A          151 IASNPEFLK  159 (450)
T ss_dssp             EEECCCCCC
T ss_pred             EEechhhhc
Confidence            999998764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.31  E-value=0.0026  Score=60.54  Aligned_cols=123  Identities=12%  Similarity=0.152  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----------------CCCCeeeecCHHHH
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----------------QPLEIPVMSDLTMV   97 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~----------------~~~gv~v~~dl~~~   97 (257)
                      +.+||+|+| +|.||..++..+++ .++++++ +|...  ..+..+....                .+..+.+++|++++
T Consensus         7 ~~~~~~vIG-lG~vG~~~A~~La~-~G~~V~~-~D~~~--~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea   81 (446)
T 4a7p_A            7 GSVRIAMIG-TGYVGLVSGACFSD-FGHEVVC-VDKDA--RKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEG   81 (446)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHH-TTCEEEE-ECSCS--TTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHH
T ss_pred             CceEEEEEc-CCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHH
Confidence            357999999 59999999988774 5788775 56431  1112221100                01236678899888


Q ss_pred             HhccccCCCccEEEEc--CChH---------hHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhh----cCceE
Q 025154           98 LGSISQSKARAVVIDF--TDAS---------TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGC  159 (257)
Q Consensus        98 l~~~~~~~~~DVvIDF--T~p~---------~~~~~~~~a---~~~Gi~vViGTTG~s~e~~~~L~~~a~~----~gipv  159 (257)
                      ++      ++|++|-.  |.++         .+.+.++..   ++.|.-+|..+| ..+...+++.+..++    ...++
T Consensus        82 ~~------~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgtt~~l~~~l~e~~~~~d~~v  154 (446)
T 4a7p_A           82 VK------DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKST-VPVGTGDEVERIIAEVAPNSGAKV  154 (446)
T ss_dssp             HT------TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSC-CCTTHHHHHHHHHHHHSTTSCCEE
T ss_pred             Hh------cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCC-CCchHHHHHHHHHHHhCCCCCceE
Confidence            85      79998876  3322         244433333   345555555444 443333344333332    34899


Q ss_pred             EEccCchHH
Q 025154          160 LIAPTLSIG  168 (257)
Q Consensus       160 l~spNfSlG  168 (257)
                      +.+|.|.-=
T Consensus       155 ~~~Pe~a~e  163 (446)
T 4a7p_A          155 VSNPEFLRE  163 (446)
T ss_dssp             EECCCCCCT
T ss_pred             EeCcccccc
Confidence            999998643

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=97.30  E-value=0.00017  Score=66.64  Aligned_cols=97  Identities=27%  Similarity=0.243  Sum_probs=60.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCCC-----CCCeeeec--CH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDMEQ-----PLEIPVMS--DL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~~~g~~~-----~~gv~v~~--dl   94 (257)
                      ++||+|+|+ ||+||.+.+++.+++++++|++-|..             ..|+--+++.-.+.     ...+.++.  |+
T Consensus         2 ~ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp   80 (342)
T 2ep7_A            2 AIKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDP   80 (342)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCCh
Confidence            379999996 99999999998888899999997731             11211011000000     01234443  44


Q ss_pred             HHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEe
Q 025154           95 TMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (257)
Q Consensus        95 ~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViG  136 (257)
                      +++- .+    .++|+|++.|-.....+.+..+++.|.. ||+-
T Consensus        81 ~~~~w~~----~gvDiV~estG~~~s~e~a~~hl~aGakkVvis  120 (342)
T 2ep7_A           81 SQIPWGD----LGVDVVIEATGVFRDRENASKHLQGGAKKVIIT  120 (342)
T ss_dssp             GGCCHHH----HTCSEEEECSSSCCBHHHHTTTGGGTCSEEEES
T ss_pred             hhCCccc----cCCCEEEECCCchhhhhhhHHHHhcCCCEEEec
Confidence            3321 10    2689999888777778888888898875 3443

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.26  E-value=0.00051  Score=59.34  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |||+|+|+ |.||+.+++.+... + .++ .++|+..  .....+.   ..+|+.+++++++++       ++|+||-.+
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~-g~~~v-~~~~r~~--~~~~~~~---~~~g~~~~~~~~~~~-------~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQ-GGYRI-YIANRGA--EKRERLE---KELGVETSATLPELH-------SDDVLILAV   65 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-CSCEE-EEECSSH--HHHHHHH---HHTCCEEESSCCCCC-------TTSEEEECS
T ss_pred             CEEEEECc-hHHHHHHHHHHHHC-CCCeE-EEECCCH--HHHHHHH---HhcCCEEeCCHHHHh-------cCCEEEEEe
Confidence            58999995 99999999988754 4 554 4566531  1122222   123666666665544       489999888


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCch
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLS  166 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfS  166 (257)
                      .|....+.+......+..+|.-+.|++.+   .|++...+ +..++ .-||..
T Consensus        66 ~~~~~~~v~~~l~~~~~ivv~~~~g~~~~---~l~~~~~~-~~~~v~~~~~~~  114 (263)
T 1yqg_A           66 KPQDMEAACKNIRTNGALVLSVAAGLSVG---TLSRYLGG-TRRIVRVMPNTP  114 (263)
T ss_dssp             CHHHHHHHHTTCCCTTCEEEECCTTCCHH---HHHHHTTS-CCCEEEEECCGG
T ss_pred             CchhHHHHHHHhccCCCEEEEecCCCCHH---HHHHHcCC-CCcEEEEcCCHH
Confidence            77666555543221244444434688863   45555443 23333 235643

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.0034  Score=60.41  Aligned_cols=119  Identities=11%  Similarity=0.043  Sum_probs=72.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .||+|+| .|.||+.++..+.. .+++++ ++|+..  ..+..+.. .....++..+.|++++++.+   .++|+||-..
T Consensus        11 ~~IgvIG-lG~MG~~lA~~La~-~G~~V~-v~dr~~--~~~~~l~~~~~~~~gi~~~~s~~e~v~~l---~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIG-LAVMGQNLILNAAD-HGFTVC-AYNRTQ--SKVDHFLANEAKGKSIIGATSIEDFISKL---KRPRKVMLLV   82 (497)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSSS--HHHHHHHHTTTTTSSEECCSSHHHHHHTS---CSSCEEEECC
T ss_pred             CCEEEEe-eHHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHHcccccCCCeEEeCCHHHHHhcC---CCCCEEEEEc
Confidence            3899999 59999999998875 577764 566531  22223321 10004677788999987511   1399998776


Q ss_pred             Ch-HhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          115 DA-STVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       115 ~p-~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      .+ ..+.+.+....   +.|.-+|.++|+... ..+++.+..++.|+.++-+|
T Consensus        83 p~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~-~~~~l~~~l~~~g~~~v~~p  134 (497)
T 2p4q_A           83 KAGAPVDALINQIVPLLEKGDIIIDGGNSHFP-DSNRRYEELKKKGILFVGSG  134 (497)
T ss_dssp             CSSHHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCCCCEEEECCCCChh-HHHHHHHHHHHcCCceeCCC
Confidence            55 35555554433   345556666776643 34455555555567666444

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.24  E-value=0.0023  Score=55.30  Aligned_cols=91  Identities=14%  Similarity=0.148  Sum_probs=56.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC---cc---------hhhhhcCCCCCCeeeecCHHHHHhcc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG---ED---------IGMVCDMEQPLEIPVMSDLTMVLGSI  101 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g---~d---------~g~~~g~~~~~gv~v~~dl~~~l~~~  101 (257)
                      .++||+|+| +|.||+.+++.+.. .++++. ++|+...-   +.         ..++.   ...+...+.+++++++  
T Consensus        18 ~~~kIgiIG-~G~mG~alA~~L~~-~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~--   89 (245)
T 3dtt_A           18 QGMKIAVLG-TGTVGRTMAGALAD-LGHEVT-IGTRDPKATLARAEPDAMGAPPFSQWL---PEHPHVHLAAFADVAA--   89 (245)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EEESCHHHHHTCC-------CCHHHHG---GGSTTCEEEEHHHHHH--
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEeCChhhhhhhhhhhhhcchhhhHHH---hhcCceeccCHHHHHh--
Confidence            457999999 59999999998875 477765 45643100   00         11222   1223445678888875  


Q ss_pred             ccCCCccEEEEcCChHhHHHHHHH----HHHcCCCeEEeC
Q 025154          102 SQSKARAVVIDFTDASTVYDNVKQ----ATAFGMRSVVYV  137 (257)
Q Consensus       102 ~~~~~~DVvIDFT~p~~~~~~~~~----a~~~Gi~vViGT  137 (257)
                          .+|+||-...+....+.+..    .+ .|.-+|..+
T Consensus        90 ----~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           90 ----GAELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             ----HCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             ----cCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence                69999988777666555533    23 555555544

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=97.23  E-value=0.0042  Score=59.29  Aligned_cols=73  Identities=12%  Similarity=0.122  Sum_probs=46.1

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCC---------------CCCCeeeecCHH
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDME---------------QPLEIPVMSDLT   95 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~---------------~~~gv~v~~dl~   95 (257)
                      +..||||+|+| .|.||..++..+++. +++++++ +|...  ..+..+....               ...++.+++|++
T Consensus         6 ~~~~mkI~VIG-~G~vG~~~A~~La~~g~g~~V~~-~D~~~--~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~   81 (481)
T 2o3j_A            6 FGKVSKVVCVG-AGYVGGPTCAMIAHKCPHITVTV-VDMNT--AKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIP   81 (481)
T ss_dssp             SCCCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHH
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHH
Confidence            34468999999 599999999988865 3788775 56320  0011111000               012456678887


Q ss_pred             HHHhccccCCCccEEEEcC
Q 025154           96 MVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        96 ~~l~~~~~~~~~DVvIDFT  114 (257)
                      +.+.      ++|++|-..
T Consensus        82 ~~~~------~aDvvii~V   94 (481)
T 2o3j_A           82 KAIA------EADLIFISV   94 (481)
T ss_dssp             HHHH------HCSEEEECC
T ss_pred             HHhh------cCCEEEEec
Confidence            7775      689988763

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.22  E-value=0.00094  Score=55.84  Aligned_cols=87  Identities=15%  Similarity=0.042  Sum_probs=52.1

Q ss_pred             Cce-EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------ecCHHHHHhccccCCC
Q 025154           35 NIK-VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (257)
Q Consensus        35 ~ik-V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~  106 (257)
                      ||| |.|+|++|.+|+.+++.+.+..++++++......  ....++...  ..++.+       .++++++++      +
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~--~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~------~   73 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK--TRIPPEIID--HERVTVIEGSFQNPGXLEQAVT------N   73 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH--HHSCHHHHT--STTEEEEECCTTCHHHHHHHHT------T
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc--ccchhhccC--CCceEEEECCCCCHHHHHHHHc------C
Confidence            566 9999999999999999988567888876543211  011111100  112221       123344553      7


Q ss_pred             ccEEEEcCCh---HhHHHHHHHHHHcCCC
Q 025154          107 RAVVIDFTDA---STVYDNVKQATAFGMR  132 (257)
Q Consensus       107 ~DVvIDFT~p---~~~~~~~~~a~~~Gi~  132 (257)
                      +|+||....+   + ....+..+.+.|..
T Consensus        74 ~d~vv~~ag~~n~~-~~~~~~~~~~~~~~  101 (221)
T 3r6d_A           74 AEVVFVGAMESGSD-MASIVKALSRXNIR  101 (221)
T ss_dssp             CSEEEESCCCCHHH-HHHHHHHHHHTTCC
T ss_pred             CCEEEEcCCCCChh-HHHHHHHHHhcCCC
Confidence            8999976532   3 45556666777754

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.20  E-value=0.0053  Score=59.01  Aligned_cols=121  Identities=11%  Similarity=0.097  Sum_probs=70.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+||+|+| .|.||+.+++.+.. .+++++ ++|+..  ..+..+...+ ....+..+.+++++.+.+   ..+|+||-
T Consensus         3 ~~~kIgiIG-lG~MG~~lA~~L~~-~G~~V~-v~dr~~--~~~~~l~~~g~~g~~i~~~~s~~e~v~~l---~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIG-LAVMGQNLILNMND-HGFVVC-AFNRTV--SKVDDFLANEAKGTKVVGAQSLKEMVSKL---KKPRRIIL   74 (484)
T ss_dssp             CCBSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHTB---CSSCEEEE
T ss_pred             CCCEEEEEC-hhHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHHhcccCCCceeccCCHHHHHhhc---cCCCEEEE
Confidence            468999999 59999999998875 577765 567531  1222222110 011334468899887521   25899887


Q ss_pred             cCChH-hHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          113 FTDAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       113 FT~p~-~~~~~~~~a---~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      ...+. .+.+.+...   ++.|.-+|-++|+...+ ..++.+..++.|+..+=+|
T Consensus        75 ~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~-t~~~~~~l~~~Gi~fvd~p  128 (484)
T 4gwg_A           75 LVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRD-TTRRCRDLKAKGILFVGSG  128 (484)
T ss_dssp             CSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHH-HHHHHHHHHHTTCEEEEEE
T ss_pred             ecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchH-HHHHHHHHHhhccccccCC
Confidence            66553 444444433   34566666666665433 3344444455566655443

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.17  E-value=0.0029  Score=55.48  Aligned_cols=88  Identities=16%  Similarity=0.203  Sum_probs=55.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |+||.|+|++|.+|+.+++.+.+ .+.++++.....  +..  .+.+.. -..++. .++++++++      ++|+||.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~--~~~--~~~~~~~~~~Dl~-~~~~~~~~~------~~d~Vih~   69 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSI--GNK--AINDYEYRVSDYT-LEDLINQLN------DVDAVVHL   69 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCC--C-------CCEEEECCCC-HHHHHHHTT------TCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeCCC--Ccc--cCCceEEEEcccc-HHHHHHhhc------CCCEEEEc
Confidence            57999999999999999998875 478887655431  111  010000 011222 344555663      79999987


Q ss_pred             CCh--------------HhHHHHHHHHHHcCCC-eE
Q 025154          114 TDA--------------STVYDNVKQATAFGMR-SV  134 (257)
Q Consensus       114 T~p--------------~~~~~~~~~a~~~Gi~-vV  134 (257)
                      ..+              ..+...++.|.+.|+. +|
T Consensus        70 a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v  105 (311)
T 3m2p_A           70 AATRGSQGKISEFHDNEILTQNLYDACYENNISNIV  105 (311)
T ss_dssp             CCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            532              2345677888888887 54

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.15  E-value=0.0047  Score=49.27  Aligned_cols=122  Identities=12%  Similarity=0.168  Sum_probs=68.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ec---CHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVvI  111 (257)
                      .+|+|+|+ |.||+.+++.+.. .+.+++ ++|+..  .....+.   ...++.+ ..   +.+.+.+.  .-..+|+||
T Consensus        20 ~~v~IiG~-G~iG~~la~~L~~-~g~~V~-vid~~~--~~~~~~~---~~~g~~~~~~d~~~~~~l~~~--~~~~ad~Vi   89 (155)
T 2g1u_A           20 KYIVIFGC-GRLGSLIANLASS-SGHSVV-VVDKNE--YAFHRLN---SEFSGFTVVGDAAEFETLKEC--GMEKADMVF   89 (155)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCG--GGGGGSC---TTCCSEEEESCTTSHHHHHTT--TGGGCSEEE
T ss_pred             CcEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHH---hcCCCcEEEecCCCHHHHHHc--CcccCCEEE
Confidence            58999995 9999999998865 467766 455431  1111111   0123322 22   22222110  003689999


Q ss_pred             EcCChHhHHHHH-HHHHH-cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154          112 DFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (257)
Q Consensus       112 DFT~p~~~~~~~-~~a~~-~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~  173 (257)
                      ..+..+.....+ ..+.. .+...++..+.- .+..+.+    ++.|+. +++|....+-.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~-~~~~~~l----~~~G~~-vi~p~~~~a~~l~~  147 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARYMFNVENVIARVYD-PEKIKIF----EENGIK-TICPAVLMIEKVKE  147 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHHTSCCSEEEEECSS-GGGHHHH----HTTTCE-EECHHHHHHHHHHH
T ss_pred             EEeCCcHHHHHHHHHHHHHCCCCeEEEEECC-HHHHHHH----HHCCCc-EEcHHHHHHHHHHH
Confidence            988665554444 44444 566666655421 2222333    347788 99898888765443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.11  E-value=0.01  Score=45.42  Aligned_cols=125  Identities=12%  Similarity=0.261  Sum_probs=70.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eec---CHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMS---DLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~---dl~~~l~~~~~~~~~DVv  110 (257)
                      .|||+|+|+ |+||+.+++.+.+ .+.+++ ++|+..  .....+..   ..++. +..   +.+.+.+.  .-.++|++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~-~g~~v~-~~d~~~--~~~~~~~~---~~~~~~~~~d~~~~~~l~~~--~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSE-KGHDIV-LIDIDK--DICKKASA---EIDALVINGDCTKIKTLEDA--GIEDADMY   73 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHHH---HCSSEEEESCTTSHHHHHHT--TTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHHH---hcCcEEEEcCCCCHHHHHHc--CcccCCEE
Confidence            369999996 9999999998875 467766 456431  11122210   12332 222   33332210  00368999


Q ss_pred             EEcCChHhHHH-HHHHHHHcC-CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154          111 IDFTDASTVYD-NVKQATAFG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       111 IDFT~p~~~~~-~~~~a~~~G-i~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~  175 (257)
                      |..+..+.... ....+.+.+ ..+|+-+++...  .+.+    ++.|+..+++|.+..+-.+...+
T Consensus        74 i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~--~~~l----~~~g~~~v~~p~~~~~~~~~~~~  134 (140)
T 1lss_A           74 IAVTGKEEVNLMSSLLAKSYGINKTIARISEIEY--KDVF----ERLGVDVVVSPELIAANYIEKLI  134 (140)
T ss_dssp             EECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTH--HHHH----HHTTCSEEECHHHHHHHHHHHHH
T ss_pred             EEeeCCchHHHHHHHHHHHcCCCEEEEEecCHhH--HHHH----HHcCCCEEECHHHHHHHHHHHHh
Confidence            98875544433 334444555 356665666443  2334    34678889999988887655443

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.08  E-value=0.0012  Score=55.09  Aligned_cols=84  Identities=7%  Similarity=0.169  Sum_probs=50.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecC-HHHHHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD-LTMVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~d-l~~~l~~~~~~~~~DVv  110 (257)
                      |||.|+|++|.+|+.+++.+.+ .+.++++...+..   ....+      .++.+    ..| .+++.+.+   .++|+|
T Consensus         1 M~ilItGatG~iG~~l~~~L~~-~g~~V~~~~R~~~---~~~~~------~~~~~~~~D~~d~~~~~~~~~---~~~d~v   67 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLST-TDYQIYAGARKVE---QVPQY------NNVKAVHFDVDWTPEEMAKQL---HGMDAI   67 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-SSCEEEEEESSGG---GSCCC------TTEEEEECCTTSCHHHHHTTT---TTCSEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCcc---chhhc------CCceEEEecccCCHHHHHHHH---cCCCEE
Confidence            5899999999999999998875 5788887654321   00000      11211    123 33332211   368999


Q ss_pred             EEcCCh----------HhHHHHHHHHHHcCCC
Q 025154          111 IDFTDA----------STVYDNVKQATAFGMR  132 (257)
Q Consensus       111 IDFT~p----------~~~~~~~~~a~~~Gi~  132 (257)
                      |.....          ......++.|.+.|+.
T Consensus        68 i~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~   99 (219)
T 3dqp_A           68 INVSGSGGKSLLKVDLYGAVKLMQAAEKAEVK   99 (219)
T ss_dssp             EECCCCTTSSCCCCCCHHHHHHHHHHHHTTCC
T ss_pred             EECCcCCCCCcEeEeHHHHHHHHHHHHHhCCC
Confidence            987532          2355666777777754

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.07  E-value=0.0084  Score=52.20  Aligned_cols=90  Identities=12%  Similarity=0.073  Sum_probs=54.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecC---HHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~  107 (257)
                      +++|.|+|++|.+|+.+++.+.+..+.++.+...... ......+.    ..++.+    ..|   ++++++      ++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-~~~~~~l~----~~~~~~~~~D~~d~~~l~~~~~------~~   73 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-KKAAKELR----LQGAEVVQGDQDDQVIMELALN------GA   73 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-SHHHHHHH----HTTCEEEECCTTCHHHHHHHHT------TC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-CHHHHHHH----HCCCEEEEecCCCHHHHHHHHh------cC
Confidence            4689999999999999999988764488877653321 11111111    112222    123   444553      69


Q ss_pred             cEEEEcCCh----------HhHHHHHHHHHHcCCC-eEE
Q 025154          108 AVVIDFTDA----------STVYDNVKQATAFGMR-SVV  135 (257)
Q Consensus       108 DVvIDFT~p----------~~~~~~~~~a~~~Gi~-vVi  135 (257)
                      |+||..+.+          ......+..|.+.|+. +|.
T Consensus        74 d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~  112 (299)
T 2wm3_A           74 YATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVY  112 (299)
T ss_dssp             SEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEE
Confidence            999987642          1234566777778875 444

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=97.06  E-value=0.00075  Score=62.33  Aligned_cols=97  Identities=22%  Similarity=0.177  Sum_probs=60.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh--hcCC---CCCCeeeec--C
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV--CDME---QPLEIPVMS--D   93 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g~~--~g~~---~~~gv~v~~--d   93 (257)
                      .+||+|.| +||+||.+.+++.++++++||++-|+.              --|+--+++  .+..   ....+.++.  |
T Consensus        11 ~~kv~ING-fGrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~~d   89 (345)
T 2b4r_O           11 ATKLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD   89 (345)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred             heEEEEeC-CchHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence            58999999 699999999999999999999998821              001100000  0000   001233342  4


Q ss_pred             HHHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEe
Q 025154           94 LTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (257)
Q Consensus        94 l~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViG  136 (257)
                      ++++- .+    .++|+|++.|-.....+.+..+++.|.. +||-
T Consensus        90 p~~~~w~~----~gvDiV~estG~f~s~e~a~~hl~aGakkVVIs  130 (345)
T 2b4r_O           90 PSQIPWGK----CQVDVVCESTGVFLTKELASSHLKGGAKKVIMS  130 (345)
T ss_dssp             GGGCCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEES
T ss_pred             cccCcccc----cCCCEEEECcCccccHhhHHHHHHCCCCEEEEC
Confidence            43321 10    2689999887666677788888888875 4553

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.04  E-value=0.0021  Score=54.36  Aligned_cols=74  Identities=19%  Similarity=0.150  Sum_probs=48.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .++||+|+| .|.||+.+++.+.+ .+.++. ++|+..             +           .+      .++|+||-.
T Consensus        18 ~~~~I~iiG-~G~mG~~la~~l~~-~g~~V~-~~~~~~-------------~-----------~~------~~aD~vi~a   64 (209)
T 2raf_A           18 QGMEITIFG-KGNMGQAIGHNFEI-AGHEVT-YYGSKD-------------Q-----------AT------TLGEIVIMA   64 (209)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECTTC-------------C-----------CS------SCCSEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEcCCH-------------H-----------Hh------ccCCEEEEc
Confidence            467999999 59999999998874 567765 345421             0           12      368998877


Q ss_pred             CChHhHHHHHHH---HHHcCCCeEEeCCCCC
Q 025154          114 TDASTVYDNVKQ---ATAFGMRSVVYVPHIQ  141 (257)
Q Consensus       114 T~p~~~~~~~~~---a~~~Gi~vViGTTG~s  141 (257)
                      ..+....+.+..   .++ +..+|.-++|++
T Consensus        65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           65 VPYPALAALAKQYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             SCHHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred             CCcHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence            776655555443   344 666666667775

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.00  E-value=0.0018  Score=62.54  Aligned_cols=118  Identities=12%  Similarity=0.068  Sum_probs=72.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecCHHHHHhccccCCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKA  106 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-----~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~  106 (257)
                      .||+|+| +|.||..+++.+...     .+++++...++.....+...      ..|+.+    ..++++++.      .
T Consensus        55 KkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~------e~G~~v~d~ta~s~aEAa~------~  121 (525)
T 3fr7_A           55 KQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEAR------AAGFTEESGTLGDIWETVS------G  121 (525)
T ss_dssp             SEEEEEC-CTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH------HTTCCTTTTCEEEHHHHHH------H
T ss_pred             CEEEEEe-EhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHH------HCCCEEecCCCCCHHHHHh------c
Confidence            6999999 599999999998765     27777655554211111111      234443    357888885      6


Q ss_pred             ccEEEEcCChHhHHHHHHH---HHHcCCCeEEeCCCCCHHHHHH-HHHHhhhcCceEE-EccCchHHH
Q 025154          107 RAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSA-LSAFCDKASMGCL-IAPTLSIGS  169 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~---a~~~Gi~vViGTTG~s~e~~~~-L~~~a~~~gipvl-~spNfSlGv  169 (257)
                      +|+||-...|....+.+..   .++.|. +|+=..|++-+.++. ....-+.  ++|+ +.||..-=+
T Consensus       122 ADVVILaVP~~~~~eVl~eI~p~LK~Ga-ILs~AaGf~I~~le~~~i~~p~d--v~VVrVmPNtPg~~  186 (525)
T 3fr7_A          122 SDLVLLLISDAAQADNYEKIFSHMKPNS-ILGLSHGFLLGHLQSAGLDFPKN--ISVIAVCPKGMGPS  186 (525)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTC-EEEESSSHHHHHHHHTTCCCCTT--SEEEEEEESSCHHH
T ss_pred             CCEEEECCChHHHHHHHHHHHHhcCCCC-eEEEeCCCCHHHHhhhcccCCCC--CcEEEEecCCCchh
Confidence            9999988877665554433   233343 456677987544332 1122233  6666 889988443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.97  E-value=0.0032  Score=56.53  Aligned_cols=93  Identities=15%  Similarity=0.127  Sum_probs=57.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cC---CCC----CCe-eeecCHHHHHhcccc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DM---EQP----LEI-PVMSDLTMVLGSISQ  103 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~---g~---~~~----~gv-~v~~dl~~~l~~~~~  103 (257)
                      +|||+|+|+ |.||+.++..+.. .++++. ++++..  .....+.   +.   +..    ..+ .+++++++++.    
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~-~g~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   74 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLAL-KGQSVL-AWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK----   74 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT----
T ss_pred             cCeEEEECC-CHHHHHHHHHHHh-CCCEEE-EEeCCH--HHHHHHHhcCCeEEeccccccccccceecCCHHHHHh----
Confidence            479999995 9999999998764 567754 566431  1111111   00   000    011 35678888774    


Q ss_pred             CCCccEEEEcCChHhHHHHHHHHH---HcCCCeEEeCCC
Q 025154          104 SKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPH  139 (257)
Q Consensus       104 ~~~~DVvIDFT~p~~~~~~~~~a~---~~Gi~vViGTTG  139 (257)
                        ++|+||-++.+..+.+.+....   +.+..+|.- .|
T Consensus        75 --~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~-~~  110 (359)
T 1bg6_A           75 --DADVILIVVPAIHHASIAANIASYISEGQLIILN-PG  110 (359)
T ss_dssp             --TCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES-SC
T ss_pred             --cCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc-CC
Confidence              7999998887777666665543   345556654 45

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.97  E-value=0.0015  Score=58.28  Aligned_cols=121  Identities=15%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCCC--C-----CCeeeec--CHHHHHhccccC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQ--P-----LEIPVMS--DLTMVLGSISQS  104 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~g~~~g~~~--~-----~gv~v~~--dl~~~l~~~~~~  104 (257)
                      |||+|+|+ |.||+.++..+.+ .+.++. ++++  .  ......+...+.  .     ..+.+++  ++++++.     
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~-~g~~V~-~~~r~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----   70 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVD-NGNEVR-IWGTEFD--TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE-----   70 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHH-HCCEEE-EECCGGG--HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT-----
T ss_pred             CEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEEccCC--HHHHHHHHHhCcCcccCccccceEEecHHhHHHHHh-----
Confidence            58999995 9999999998875 456655 4554  2  111222211100  0     1124555  7777764     


Q ss_pred             CCccEEEEcCChHhHHHHHHHHH--HcCCCeEEeCCCC---CHHHHHHHHHHhhh--c---CceEEEccCchH
Q 025154          105 KARAVVIDFTDASTVYDNVKQAT--AFGMRSVVYVPHI---QLETVSALSAFCDK--A---SMGCLIAPTLSI  167 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~--~~Gi~vViGTTG~---s~e~~~~L~~~a~~--~---gipvl~spNfSl  167 (257)
                       ++|+||-.+.+....+.+....  ..+..+|.-+.|+   .+...+.+.+...+  .   ..++...||+..
T Consensus        71 -~~D~vi~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~  142 (335)
T 1txg_A           71 -NAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAR  142 (335)
T ss_dssp             -TCSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHH
T ss_pred             -cCCEEEEcCChHHHHHHHHHHhcCCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHH
Confidence             7999998877776666555432  2344444434477   32111233333222  1   146778888753

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=96.96  E-value=0.0014  Score=60.17  Aligned_cols=98  Identities=22%  Similarity=0.238  Sum_probs=61.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhhcCC-----CCCCeeee--cC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVCDME-----QPLEIPVM--SD   93 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g~~~g~~-----~~~gv~v~--~d   93 (257)
                      |+||+|.| .||+||.+.|++.+.+++++|++=|+..              -|+--+++.-.+     ....+.++  .|
T Consensus         1 ~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d   79 (332)
T 3pym_A            1 MVRVAING-FGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERD   79 (332)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CeEEEEEC-CCcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeecc
Confidence            68999999 5999999999998888999999877410              011111110000     00123443  34


Q ss_pred             HHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEe
Q 025154           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViG  136 (257)
                      ++++-=   .+.++|++++.|-.....+.+...++.|.. |||-
T Consensus        80 p~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIs  120 (332)
T 3pym_A           80 PANLPW---GSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVIT  120 (332)
T ss_dssp             GGGSCT---TTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEES
T ss_pred             cccCCc---cccCccEEEEecccccCHHHHHHHHHcCCCEEEEC
Confidence            544310   013789999877666777888888888875 4443

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=96.95  E-value=0.0013  Score=60.32  Aligned_cols=98  Identities=27%  Similarity=0.223  Sum_probs=62.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhhhcCC-----CCCCeeeec--CHH
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMVCDME-----QPLEIPVMS--DLT   95 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-------------~~~g~d~g~~~g~~-----~~~gv~v~~--dl~   95 (257)
                      +||||+|+ |++||.+.+++.++ +++++++-|.             ...|+-.+++.-.+     ....+.++.  |++
T Consensus         1 ikVgInG~-G~IGr~vlr~l~~~-~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   78 (331)
T 2g82_O            1 MKVGINGF-GRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK   78 (331)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChh
Confidence            59999997 99999999998887 9999987762             11232111110000     011344542  454


Q ss_pred             HHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCC-CeEEeCCC
Q 025154           96 MVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPH  139 (257)
Q Consensus        96 ~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi-~vViGTTG  139 (257)
                      ++- .+    .++|+|++.|......+.+...++.|. .+||..++
T Consensus        79 ~l~w~~----~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps  120 (331)
T 2g82_O           79 EIPWAE----AGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA  120 (331)
T ss_dssp             GSCTTT----TTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             hCcccc----cCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCC
Confidence            432 11    268999988877778888888999986 35555443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.94  E-value=0.0064  Score=57.08  Aligned_cols=68  Identities=21%  Similarity=0.329  Sum_probs=43.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC---------------CC-eeeecCHHHHHh
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP---------------LE-IPVMSDLTMVLG   99 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~---------------~g-v~v~~dl~~~l~   99 (257)
                      |||+|+| +|.||..++..+++ .++++++ +|...  ..+..+.....+               .+ +..++|+++++.
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~-~G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~   75 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSA-RGHEVIG-VDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence            5899999 59999999988775 5778654 56420  111111100000               22 667889988775


Q ss_pred             ccccCCCccEEEEcC
Q 025154          100 SISQSKARAVVIDFT  114 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT  114 (257)
                            ++|++|-..
T Consensus        76 ------~aDvviiaV   84 (436)
T 1mv8_A           76 ------DSDVSFICV   84 (436)
T ss_dssp             ------TCSEEEECC
T ss_pred             ------cCCEEEEEc
Confidence                  799998776

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.92  E-value=0.0018  Score=57.12  Aligned_cols=95  Identities=13%  Similarity=0.120  Sum_probs=57.0

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcC----C-cEEEEEEecCCCCcchhhhhcCCCCCCee--------------eecC
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKAR----G-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP--------------VMSD   93 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~----~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--------------v~~d   93 (257)
                      ..||||+|+|+ |.||..++..+.+.+    + .++. ++++.   .....+..   +.|+.              ++++
T Consensus         6 ~~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r~---~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~   77 (317)
T 2qyt_A            6 QQPIKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVS-WIARG---AHLEAIRA---AGGLRVVTPSRDFLARPTCVTDN   77 (317)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEE-EECCH---HHHHHHHH---HTSEEEECSSCEEEECCSEEESC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCccccCCCCCEE-EEEcH---HHHHHHHh---cCCeEEEeCCCCeEEecceEecC
Confidence            34589999995 999999999887651    5 6665 34431   11222211   01222              2345


Q ss_pred             HHHHHhccccCCCccEEEEcCChHhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 025154           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~  142 (257)
                      .+. +      ..+|+||-.+.+..+.+.+.....   .+..+|.-++|+..
T Consensus        78 ~~~-~------~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           78 PAE-V------GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             HHH-H------CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             ccc-c------CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            443 4      379999988777666555544332   35566766789875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.90  E-value=0.0074  Score=47.42  Aligned_cols=129  Identities=9%  Similarity=0.059  Sum_probs=72.7

Q ss_pred             CCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ec---CHHHHHhccccCC
Q 025154           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSK  105 (257)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~  105 (257)
                      +|.+.+.+|.|+|+ |+||+.+++.+.+ .+++++. +|...  ..+..+.    ..|+.+ +.   +.+ .+.+. .-.
T Consensus         2 ~~~~~~~~viIiG~-G~~G~~la~~L~~-~g~~v~v-id~~~--~~~~~~~----~~g~~~i~gd~~~~~-~l~~a-~i~   70 (140)
T 3fwz_A            2 NAVDICNHALLVGY-GRVGSLLGEKLLA-SDIPLVV-IETSR--TRVDELR----ERGVRAVLGNAANEE-IMQLA-HLE   70 (140)
T ss_dssp             CCCCCCSCEEEECC-SHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH----HTTCEEEESCTTSHH-HHHHT-TGG
T ss_pred             CcccCCCCEEEECc-CHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHHH----HcCCCEEECCCCCHH-HHHhc-Ccc
Confidence            45555679999995 9999999998874 5777764 55421  1111121    123332 22   222 22210 003


Q ss_pred             CccEEEEcCChHhH-HHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154          106 ARAVVIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       106 ~~DVvIDFT~p~~~-~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~  175 (257)
                      ++|++|-.+..+.. ...+..+.+.  ++++|.=.  .+++..+.|+    +.|+-.++.|....+-.++..+
T Consensus        71 ~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~--~~~~~~~~l~----~~G~d~vi~p~~~~a~~i~~~l  137 (140)
T 3fwz_A           71 CAKWLILTIPNGYEAGEIVASARAKNPDIEIIARA--HYDDEVAYIT----ERGANQVVMGEREIARTMLELL  137 (140)
T ss_dssp             GCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE--SSHHHHHHHH----HTTCSEEEEHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHH----HCCCCEEECchHHHHHHHHHHh
Confidence            68988876654333 3344444443  44544322  3455555554    4678889999888887665543

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=96.89  E-value=0.003  Score=60.75  Aligned_cols=76  Identities=8%  Similarity=0.070  Sum_probs=64.6

Q ss_pred             CCeeeecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154           86 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus        86 ~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      .++|+|..+.++.+.   ...+|+.|.|..++.+.+.++.|.++|+++||=|.||..++.++|.++|+++|+.+ +.||-
T Consensus        19 ~~~Pv~~~~~~~~~~---p~~~DlavI~vPa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rl-iGPNc   94 (480)
T 3dmy_A           19 QALTQVRRWDSACQK---LPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLV-MGPDC   94 (480)
T ss_dssp             -CCEEESSHHHHHHH---STTCCEEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCE-ECSSC
T ss_pred             CCCcccchHHHHHhc---CCCCCEEEEecCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEE-EecCc
Confidence            368999888887653   13689999999999999999999999999888788999877788999999988755 68998

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.89  E-value=0.0073  Score=49.05  Aligned_cols=83  Identities=22%  Similarity=0.264  Sum_probs=51.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------ecCHHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D  108 (257)
                      +||.|+|++|.+|+.+++.+.+. +.++++...+..   ....+.    ..++.+       .++++++++      ++|
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~~---~~~~~~----~~~~~~~~~D~~~~~~~~~~~~------~~d   69 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSS---RLPSEG----PRPAHVVVGDVLQAADVDKTVA------GQD   69 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGG---GSCSSS----CCCSEEEESCTTSHHHHHHHHT------TCS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeChh---hccccc----CCceEEEEecCCCHHHHHHHHc------CCC
Confidence            68999999999999999998764 688876553211   000000    112211       123444553      689


Q ss_pred             EEEEcCCh-----------HhHHHHHHHHHHcCCC
Q 025154          109 VVIDFTDA-----------STVYDNVKQATAFGMR  132 (257)
Q Consensus       109 VvIDFT~p-----------~~~~~~~~~a~~~Gi~  132 (257)
                      +||.+..+           ......++.|.+.++.
T Consensus        70 ~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~  104 (206)
T 1hdo_A           70 AVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVD  104 (206)
T ss_dssp             EEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             EEEECccCCCCCCccchHHHHHHHHHHHHHHhCCC
Confidence            99987632           2345666777777764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.88  E-value=0.015  Score=55.14  Aligned_cols=71  Identities=11%  Similarity=0.122  Sum_probs=45.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhh---------------hhcCCCCCCeeeecCHHHH
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGM---------------VCDMEQPLEIPVMSDLTMV   97 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~---------------~~g~~~~~gv~v~~dl~~~   97 (257)
                      .||||+|+| +|.||..++..+++.. ++++++ +|...  ..+..               +.......++..++|++++
T Consensus         4 ~~mkI~VIG-~G~mG~~lA~~La~~g~G~~V~~-~d~~~--~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~   79 (467)
T 2q3e_A            4 EIKKICCIG-AGYVGGPTCSVIAHMCPEIRVTV-VDVNE--SRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDA   79 (467)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHH
T ss_pred             CccEEEEEC-CCHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHH
Confidence            468999999 5999999999887652 788654 56420  00111               1100001256677888887


Q ss_pred             HhccccCCCccEEEEcC
Q 025154           98 LGSISQSKARAVVIDFT  114 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT  114 (257)
                      +.      ++|++|-..
T Consensus        80 ~~------~aDvViiaV   90 (467)
T 2q3e_A           80 IK------EADLVFISV   90 (467)
T ss_dssp             HH------HCSEEEECC
T ss_pred             Hh------cCCEEEEEc
Confidence            75      689988764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.86  E-value=0.0035  Score=56.28  Aligned_cols=91  Identities=18%  Similarity=0.182  Sum_probs=56.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ec----C---HHHHHhccccCCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS----D---LTMVLGSISQSKA  106 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~----d---l~~~l~~~~~~~~  106 (257)
                      |+||.|+|++|.+|+.+++.+.+.++.++++...+..   ....+..   ..++.+ ..    |   ++++++      +
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~---~~~~~~~---~~~v~~~~~Dl~~d~~~~~~~~~------~   91 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTD---RLGDLVK---HERMHFFEGDITINKEWVEYHVK------K   91 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCT---TTGGGGG---STTEEEEECCTTTCHHHHHHHHH------H
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChh---hhhhhcc---CCCeEEEeCccCCCHHHHHHHhc------c
Confidence            5799999999999999999998777889887654321   1111111   122322 11    2   334453      6


Q ss_pred             ccEEEEcC---ChHh---------------HHHHHHHHHHcCCCeEEeC
Q 025154          107 RAVVIDFT---DAST---------------VYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus       107 ~DVvIDFT---~p~~---------------~~~~~~~a~~~Gi~vViGT  137 (257)
                      +|+||.+.   .+..               +...++.|.+.|..+|.-.
T Consensus        92 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~S  140 (372)
T 3slg_A           92 CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS  140 (372)
T ss_dssp             CSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEEC
T ss_pred             CCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence            99999854   2221               1346777778887776433

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=96.82  E-value=0.0054  Score=56.56  Aligned_cols=106  Identities=14%  Similarity=0.066  Sum_probs=60.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe---cCCCCcchhhhhcC-C------CCCC--------ee-eecCHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDM-E------QPLE--------IP-VMSDLT   95 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd---~~~~g~d~g~~~g~-~------~~~g--------v~-v~~dl~   95 (257)
                      ||||+|+|+ |.||..++..++...+.++.. ++   +.  ...+..+... +      ...+        +. +++|++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~~V~~-~~~~~r~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGVEVRV-LTLFADE--AERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPE   77 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTEEEEE-ECCSTTH--HHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCCEEEE-EeCCCCc--HHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHH
Confidence            589999996 999999998876445777664 45   21  0111111100 0      0001        22 567888


Q ss_pred             HHHhccccCCCccEEEEcCChHhHHHHHHHHHH---cCCCeEE--eCCCCCHHHHHHHHH
Q 025154           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVV--YVPHIQLETVSALSA  150 (257)
Q Consensus        96 ~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~---~Gi~vVi--GTTG~s~e~~~~L~~  150 (257)
                      +++.      .+|+||-++.+....+.+.....   .+..||.  ++.|+..+..+.+.+
T Consensus        78 ~a~~------~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G~~~~~~~~l~~  131 (404)
T 3c7a_A           78 IAIS------GADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQCRDILGD  131 (404)
T ss_dssp             HHHT------TCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTTHHHHHHHHHGG
T ss_pred             HHhC------CCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCccHHHHHHHHHHh
Confidence            8774      79999988776666655554432   3444554  445543332234443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.82  E-value=0.0044  Score=54.62  Aligned_cols=100  Identities=13%  Similarity=0.105  Sum_probs=57.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------------cCCC------CCCeeeecC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------------DMEQ------PLEIPVMSD   93 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~---------------g~~~------~~gv~v~~d   93 (257)
                      +.||+|+|+ |.||+.+++.++. .+++++. +|+..  ..+....               +...      ...+..++|
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~-~G~~V~l-~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~   78 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAF-HGFAVTA-YDINT--DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDD   78 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSH--HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EeCCH--HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCC
Confidence            468999995 9999999998774 5888664 66431  0111100               0000      012456788


Q ss_pred             HHHHHhccccCCCccEEEEcCChH--hHHHHHHH---HHHcCCCeEEeCCCCCHHHH
Q 025154           94 LTMVLGSISQSKARAVVIDFTDAS--TVYDNVKQ---ATAFGMRSVVYVPHIQLETV  145 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT~p~--~~~~~~~~---a~~~Gi~vViGTTG~s~e~~  145 (257)
                      +++++.      ++|+||....++  .....+..   .+..+.-++.-|++++.+++
T Consensus        79 ~~~~~~------~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~l  129 (283)
T 4e12_A           79 LAQAVK------DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDL  129 (283)
T ss_dssp             HHHHTT------TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHhc------cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence            888874      799999876543  33333333   33334434445667876543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.81  E-value=0.011  Score=48.71  Aligned_cols=84  Identities=20%  Similarity=0.232  Sum_probs=50.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHH----HHHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLT----MVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~----~~l~~~~~~~~~DVv  110 (257)
                      |||.|+|++|.+|+.+++.+.+ .+.++++...+.   .....+.     .++.+ .-|+.    +.+.      .+|+|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~---~~~~~~~-----~~~~~~~~D~~d~~~~~~~------~~d~v   65 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKN-RGHEVTAIVRNA---GKITQTH-----KDINILQKDIFDLTLSDLS------DQNVV   65 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCS---HHHHHHC-----SSSEEEECCGGGCCHHHHT------TCSEE
T ss_pred             CeEEEEcCCchhHHHHHHHHHh-CCCEEEEEEcCc---hhhhhcc-----CCCeEEeccccChhhhhhc------CCCEE
Confidence            6899999999999999998875 478888765432   1111111     11211 11221    4453      79999


Q ss_pred             EEcCCh---------HhHHHHHHHHHHcC-CCeE
Q 025154          111 IDFTDA---------STVYDNVKQATAFG-MRSV  134 (257)
Q Consensus       111 IDFT~p---------~~~~~~~~~a~~~G-i~vV  134 (257)
                      |.+..+         ..+...+..|.+.| ..+|
T Consensus        66 i~~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v   99 (221)
T 3ew7_A           66 VDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLL   99 (221)
T ss_dssp             EECCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEE
T ss_pred             EECCcCCccccchHHHHHHHHHHHHHhcCCceEE
Confidence            987632         33455666666664 3444

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.80  E-value=0.011  Score=49.88  Aligned_cols=87  Identities=13%  Similarity=0.149  Sum_probs=50.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------ecCHHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~  107 (257)
                      |++|.|+|++|.+|+.+++.+.+....++++......   ....+.    ..++.+       .++++++++      .+
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~---~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~------~~   89 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPA---KIHKPY----PTNSQIIMGDVLNHAALKQAMQ------GQ   89 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGG---GSCSSC----CTTEEEEECCTTCHHHHHHHHT------TC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChh---hhcccc----cCCcEEEEecCCCHHHHHHHhc------CC
Confidence            6789999999999999999887543377776543211   111111    112221       123445553      68


Q ss_pred             cEEEEcCChH----hHHHHHHHHHHcCCC-eE
Q 025154          108 AVVIDFTDAS----TVYDNVKQATAFGMR-SV  134 (257)
Q Consensus       108 DVvIDFT~p~----~~~~~~~~a~~~Gi~-vV  134 (257)
                      |+||....+.    .+...+..+.+.|+. +|
T Consensus        90 D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV  121 (236)
T 3qvo_A           90 DIVYANLTGEDLDIQANSVIAAMKACDVKRLI  121 (236)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEcCCCCchhHHHHHHHHHHHHcCCCEEE
Confidence            9988654322    223455666677764 44

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.78  E-value=0.02  Score=54.65  Aligned_cols=121  Identities=12%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----C------------CCCeeeecCHHHH
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----Q------------PLEIPVMSDLTMV   97 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~----~------------~~gv~v~~dl~~~   97 (257)
                      +.|||+|+| +|.||..++..++ ..++++++ +|...  ..+..+....    .            ...+.+++|+++.
T Consensus         7 ~~~~I~VIG-~G~vG~~lA~~la-~~G~~V~~-~d~~~--~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            7 GSMNLTIIG-SGSVGLVTGACLA-DIGHDVFC-LDVDQ--AKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred             CCceEEEEC-cCHHHHHHHHHHH-hCCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHH
Confidence            458999999 5999999998876 45788664 55320  0111111000    0            1135677888877


Q ss_pred             HhccccCCCccEEEEcCC-h---------HhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhh--------cC
Q 025154           98 LGSISQSKARAVVIDFTD-A---------STVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDK--------AS  156 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT~-p---------~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~--------~g  156 (257)
                      +.      .+|++|-... |         ..+.+.++...   +.+.-+|. +++......+++.+..++        ..
T Consensus        82 ~~------~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~-~STv~~gt~~~l~~~l~~~~~~g~~~~~  154 (478)
T 2y0c_A           82 VA------HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD-KSTVPVGTAERVRAAVAEELAKRGGDQM  154 (478)
T ss_dssp             HH------HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCC
T ss_pred             hh------cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCcCCCchHHHHHHHHHHhcCCCCCcc
Confidence            75      6899887653 3         45555444333   33444444 444333222223222221        12


Q ss_pred             ceEEEccCch
Q 025154          157 MGCLIAPTLS  166 (257)
Q Consensus       157 ipvl~spNfS  166 (257)
                      .+++++|.|.
T Consensus       155 ~~v~~~Pe~~  164 (478)
T 2y0c_A          155 FSVVSNPEFL  164 (478)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEChhhh
Confidence            5788999876

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.77  E-value=0.014  Score=55.94  Aligned_cols=125  Identities=18%  Similarity=0.094  Sum_probs=68.7

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCC--CcchhhhhcCCC------------------CCCeeee
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV--GEDIGMVCDMEQ------------------PLEIPVM   91 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~--g~d~g~~~g~~~------------------~~gv~v~   91 (257)
                      ..+|||+|+| .|.||..++..+++.+++ ++++ +|....  ...+..+.....                  ...+..+
T Consensus        16 ~~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~-~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~t   93 (478)
T 3g79_A           16 GPIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLG-FQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECT   93 (478)
T ss_dssp             CSCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEE-ECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEE-EECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEe
Confidence            4568999999 599999999988866588 8775 664321  001222211000                  1235566


Q ss_pred             cCHHHHHhccccCCCccEEEEcC-ChH--------------hHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHH-HHh
Q 025154           92 SDLTMVLGSISQSKARAVVIDFT-DAS--------------TVYDNVKQATAFGMRSVVYVP---HIQLETVSALS-AFC  152 (257)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDFT-~p~--------------~~~~~~~~a~~~Gi~vViGTT---G~s~e~~~~L~-~~a  152 (257)
                      +| .+++.      ++|++|... +|.              ...+.+...++.|.-||..+|   |.+.+-.+.+. +..
T Consensus        94 td-~ea~~------~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~  166 (478)
T 3g79_A           94 PD-FSRIS------ELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEES  166 (478)
T ss_dssp             SC-GGGGG------GCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHH
T ss_pred             Cc-HHHHh------cCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhc
Confidence            67 45553      689988653 221              122333444556665555554   44443333332 211


Q ss_pred             h-h--cCceEEEccCch
Q 025154          153 D-K--ASMGCLIAPTLS  166 (257)
Q Consensus       153 ~-~--~gipvl~spNfS  166 (257)
                      . +  ....++++|.|-
T Consensus       167 g~~~~~d~~v~~~Pe~~  183 (478)
T 3g79_A          167 GLKAGEDFALAHAPERV  183 (478)
T ss_dssp             CCCBTTTBEEEECCCCC
T ss_pred             CCCcCCceeEEeCCccC
Confidence            1 0  126899999874

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.77  E-value=0.01  Score=52.58  Aligned_cols=96  Identities=10%  Similarity=0.141  Sum_probs=54.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e------cCHHHHHhccccCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M------SDLTMVLGSISQSK  105 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~------~dl~~~l~~~~~~~  105 (257)
                      .+|||.|+||+|.+|+.+++.+.+. ..+++++.-.... ......+.......++.+ .      ++++++++.    .
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~   97 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY-SGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKE----R   97 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCT-TCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH----H
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccc-ccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhh----c
Confidence            4689999999999999999998865 3477766543211 111111111100123322 1      234445542    2


Q ss_pred             CccEEEEcCCh---H---------------hHHHHHHHHHHcCCC-eE
Q 025154          106 ARAVVIDFTDA---S---------------TVYDNVKQATAFGMR-SV  134 (257)
Q Consensus       106 ~~DVvIDFT~p---~---------------~~~~~~~~a~~~Gi~-vV  134 (257)
                      ++|+||.+..+   .               .+...++.|.+.|+. +|
T Consensus        98 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v  145 (346)
T 4egb_A           98 DVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLV  145 (346)
T ss_dssp             TCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEE
T ss_pred             CCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            59999987531   1               135667888888877 44

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.77  E-value=0.0092  Score=53.26  Aligned_cols=33  Identities=24%  Similarity=0.130  Sum_probs=27.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ++||.|+||+|.+|+.+++.+.+. +.++.+...
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R   42 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDA-HRPTYILAR   42 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEEC
Confidence            579999999999999999998865 578776554

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.74  E-value=0.0099  Score=54.50  Aligned_cols=106  Identities=13%  Similarity=0.103  Sum_probs=64.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++||+|+| .|.||..+++.+.. .++++. ++|+..  .......    ..|+..++++++++.+-  ...+|+||-..
T Consensus         8 ~~kIgIIG-~G~mG~slA~~L~~-~G~~V~-~~dr~~--~~~~~a~----~~G~~~~~~~~e~~~~a--~~~aDlVilav   76 (341)
T 3ktd_A            8 SRPVCILG-LGLIGGSLLRDLHA-ANHSVF-GYNRSR--SGAKSAV----DEGFDVSADLEATLQRA--AAEDALIVLAV   76 (341)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSCH--HHHHHHH----HTTCCEESCHHHHHHHH--HHTTCEEEECS
T ss_pred             CCEEEEEe-ecHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeeeCCHHHHHHhc--ccCCCEEEEeC
Confidence            46899999 59999999998875 467765 566531  1111121    34666678888877410  01479999888


Q ss_pred             ChHhHHHHHHHHHHcC-CCeEEeCCCCCHHHHHHHHHH
Q 025154          115 DASTVYDNVKQATAFG-MRSVVYVPHIQLETVSALSAF  151 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~G-i~vViGTTG~s~e~~~~L~~~  151 (257)
                      .+....+.+....... -.+|+=+++...+-.+.+++.
T Consensus        77 P~~~~~~vl~~l~~~~~~~iv~Dv~Svk~~i~~~~~~~  114 (341)
T 3ktd_A           77 PMTAIDSLLDAVHTHAPNNGFTDVVSVKTAVYDAVKAR  114 (341)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEECCSCSHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHccCCCCEEEEcCCCChHHHHHHHHh
Confidence            8776666665443332 134544555555444555543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.70  E-value=0.0071  Score=50.12  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=27.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |||.|+|++|.+|+.+++.+.+. +.++++...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~-g~~V~~~~R   32 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR-GHEVLAVVR   32 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEe
Confidence            68999999999999999998764 788887653

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=96.70  E-value=0.003  Score=58.08  Aligned_cols=98  Identities=24%  Similarity=0.288  Sum_probs=61.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCC-----CCCCeeee--cCH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDME-----QPLEIPVM--SDL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~~~g~~-----~~~gv~v~--~dl   94 (257)
                      ++||+|.| .||+||.+.|++.+.+++++|++-|..             --|+--+++.-.+     ....+.++  .|+
T Consensus         4 ~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp   82 (338)
T 3lvf_P            4 AVKVAING-FGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDA   82 (338)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred             cEEEEEEC-CCcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEeccc
Confidence            47999999 599999999999888899999987621             0011111110000     00123443  455


Q ss_pred             HHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEe
Q 025154           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViG  136 (257)
                      +++-=   .+.++|++++.|-.....+.+...++.|.. |||-
T Consensus        83 ~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIS  122 (338)
T 3lvf_P           83 SKLPW---KDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS  122 (338)
T ss_dssp             GGSCT---TTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEES
T ss_pred             ccCCc---cccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEEC
Confidence            54311   013789999877666777888888888875 4443

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=96.67  E-value=0.0028  Score=58.30  Aligned_cols=97  Identities=18%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchh-hhhcCCC------CCCeeee--
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIG-MVCDMEQ------PLEIPVM--   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g-~~~g~~~------~~gv~v~--   91 (257)
                      |+||+|.| .||+||.+.|++.+.+++++|++-|+.              --|+--+ ++.-..+      ...+.++  
T Consensus         3 ~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e   81 (337)
T 3v1y_O            3 KIKIGING-FGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI   81 (337)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred             ceEEEEEC-CChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence            68999999 599999999999888899999987741              0011111 1000000      0113333  


Q ss_pred             cCHHHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEe
Q 025154           92 SDLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (257)
Q Consensus        92 ~dl~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViG  136 (257)
                      .|++++- .+    .++|++++.|-.....+.+...++.|.. |||-
T Consensus        82 ~dp~~i~w~~----~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIs  124 (337)
T 3v1y_O           82 RNPDEIPWAE----AGAEYVVESTGVFTDKEKAAAHLKGGAKKVVIS  124 (337)
T ss_dssp             SSGGGCCHHH----HTCCEEEECSSSCCSHHHHTHHHHTTCCEEEES
T ss_pred             cCcccCCccc----cCCcEEEEeccccCCHHHHHHHHHcCCCEEEEC
Confidence            3443321 00    2688888877666667777778888865 4443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.66  E-value=0.02  Score=43.86  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=71.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-ee---cCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~---~dl~~~l~~~~~~~~~DVv  110 (257)
                      |.+|+|+|+ |.+|+.+++.+.. .+.+++ ++|+..  .....+.    ..+.. +.   .+.+.+.+.  .-.++|++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~d~~~~~~l~~~--~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHR-MGHEVL-AVDINE--EKVNAYA----SYATHAVIANATEENELLSL--GIRNFEYV   74 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCCE-EEESCH--HHHHTTT----TTCSEEEECCTTCHHHHHTT--TGGGCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HhCCEEEEeCCCCHHHHHhc--CCCCCCEE
Confidence            457999996 9999999998875 466755 455421  1111111    11222 22   233332210  00368999


Q ss_pred             EEcCCh--HhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154          111 IDFTDA--STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (257)
Q Consensus       111 IDFT~p--~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a  176 (257)
                      |..+..  +.....+..+.+.+.+-++... -+.+..+.++    +.|+..++.|....+-.+...+.
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l~----~~g~~~vi~p~~~~~~~l~~~~~  137 (144)
T 2hmt_A           75 IVAIGANIQASTLTTLLLKELDIPNIWVKA-QNYYHHKVLE----KIGADRIIHPEKDMGVKIAQSLS  137 (144)
T ss_dssp             EECCCSCHHHHHHHHHHHHHTTCSEEEEEC-CSHHHHHHHH----HHTCSEEECHHHHHHHHHHHHHH
T ss_pred             EECCCCchHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHH----HcCCCEEECccHHHHHHHHHHHh
Confidence            988753  3344566667777876555433 1233333343    35678888998888776665554

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=96.66  E-value=0.002  Score=59.50  Aligned_cols=100  Identities=21%  Similarity=0.195  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhhcCC-----CCCCeeee--cC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVCDME-----QPLEIPVM--SD   93 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~g~~~g~~-----~~~gv~v~--~d   93 (257)
                      .|+||+|.| .||+||.+.|++.+.+++++|++-|+..             -|+--+++.-.+     ....+.++  .|
T Consensus         3 ~~~kv~ING-fGrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~d   81 (345)
T 4dib_A            3 AMTRVAING-FGRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRD   81 (345)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSC
T ss_pred             ccEEEEEEC-CCcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecCC
Confidence            379999999 5999999999988888999999877410             011001110000     00123443  34


Q ss_pred             HHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEeC
Q 025154           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYV  137 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViGT  137 (257)
                      ++++-=   .+.++|++++.|--....+.+...++.|.. |||-.
T Consensus        82 p~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISa  123 (345)
T 4dib_A           82 PKELPW---TDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTA  123 (345)
T ss_dssp             GGGSCT---TTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESS
T ss_pred             hhhCCc---cccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECC
Confidence            554311   013789999877666677888888888875 44433

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.65  E-value=0.0014  Score=51.68  Aligned_cols=67  Identities=10%  Similarity=0.192  Sum_probs=46.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..||+|+|+ |.||+.+++.+.. .+++ +.++++..  ..+..++.   .++  +..++++++++.      ++|+||.
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~-~g~~-v~v~~r~~--~~~~~~a~---~~~~~~~~~~~~~~~~~------~~Divi~   86 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSY-PQYK-VTVAGRNI--DHVRAFAE---KYEYEYVLINDIDSLIK------NNDVIIT   86 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCT-TTCE-EEEEESCH--HHHHHHHH---HHTCEEEECSCHHHHHH------TCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCE-EEEEcCCH--HHHHHHHH---HhCCceEeecCHHHHhc------CCCEEEE
Confidence            458999995 9999999998765 6888 77888641  11222221   122  335678888885      7999998


Q ss_pred             cCC
Q 025154          113 FTD  115 (257)
Q Consensus       113 FT~  115 (257)
                      .|.
T Consensus        87 at~   89 (144)
T 3oj0_A           87 ATS   89 (144)
T ss_dssp             CSC
T ss_pred             eCC
Confidence            875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.64  E-value=0.0052  Score=53.81  Aligned_cols=99  Identities=16%  Similarity=0.190  Sum_probs=54.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC--C-----CCCeeeecCHHHHHhccccCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME--Q-----PLEIPVMSDLTMVLGSISQSK  105 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--g~~--~-----~~gv~v~~dl~~~l~~~~~~~  105 (257)
                      ||||+|+|+ |.||+.++..+.+ .++++.. +++..  .....+.  +..  .     ...+.++ +.+++.+.+   .
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~---~   73 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQ-GGNDVTL-IDQWP--AHIEAIRKNGLIADFNGEEVVANLPIF-SPEEIDHQN---E   73 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHHHCEEEEETTEEEEECCCEE-CGGGCCTTS---C
T ss_pred             CCeEEEECc-CHHHHHHHHHHHh-CCCcEEE-EECCH--HHHHHHHhCCEEEEeCCCeeEecceee-cchhhcccC---C
Confidence            689999995 9999999998874 5677654 55421  1111111  000  0     0011112 222322100   2


Q ss_pred             CccEEEEcCChHhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 025154          106 ARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~  142 (257)
                      ++|+||-.+.+....+.+.....   .+..+|.-++|++.
T Consensus        74 ~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~  113 (316)
T 2ew2_A           74 QVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH  113 (316)
T ss_dssp             CCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred             CCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            68999987777766665554433   35556666678864

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.64  E-value=0.0055  Score=52.80  Aligned_cols=120  Identities=11%  Similarity=0.126  Sum_probs=69.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecC---HHHHHhccccCCCc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKAR  107 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~  107 (257)
                      ++|.|+|++|.+|+.+++.+.+. ++.++++...+..   ....+..    .++.+    ..|   ++++++      ++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~---~~~~l~~----~~~~~~~~D~~d~~~l~~~~~------~~   67 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE---KASTLAD----QGVEVRHGDYNQPESLQKAFA------GV   67 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTT---TTHHHHH----TTCEEEECCTTCHHHHHHHTT------TC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHH---HHhHHhh----cCCeEEEeccCCHHHHHHHHh------cC
Confidence            47999999999999999988765 4788887553321   1111110    12211    123   344453      69


Q ss_pred             cEEEEcCCh--------HhHHHHHHHHHHcCC-CeE-EeCCCC------CHHHHHHHHHHhhhcCceEE-EccCchHH
Q 025154          108 AVVIDFTDA--------STVYDNVKQATAFGM-RSV-VYVPHI------QLETVSALSAFCDKASMGCL-IAPTLSIG  168 (257)
Q Consensus       108 DVvIDFT~p--------~~~~~~~~~a~~~Gi-~vV-iGTTG~------s~e~~~~L~~~a~~~gipvl-~spNfSlG  168 (257)
                      |+||.+..+        ......++.|.+.|+ ++| +++.+-      -.......+++.++.|+++. +-|++=.|
T Consensus        68 d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~~K~~~E~~~~~~~~~~~ilrp~~~~~  145 (287)
T 2jl1_A           68 SKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAFAEESIIPLAHVHLATEYAIRTTNIPYTFLRNALYTD  145 (287)
T ss_dssp             SEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGCCSTHHHHHHHHHHHHHHTTCCEEEEEECCBHH
T ss_pred             CEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCCchHHHHHHHHHHHHHcCCCeEEEECCEecc
Confidence            999988642        244566778888887 444 333221      11223345666666677655 45555444

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.63  E-value=0.0026  Score=55.11  Aligned_cols=85  Identities=21%  Similarity=0.270  Sum_probs=53.0

Q ss_pred             CCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      |++..+||.|+|++|.+|+.+++.+.+ .+.++++. ++.. + |+.            -.++++++++.    ..+|+|
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~-~r~~-~-Dl~------------d~~~~~~~~~~----~~~d~v   67 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKG-KNVEVIPT-DVQD-L-DIT------------NVLAVNKFFNE----KKPNVV   67 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTT-SSEEEEEE-CTTT-C-CTT------------CHHHHHHHHHH----HCCSEE
T ss_pred             cccccceEEEECCCChHHHHHHHHHHh-CCCeEEec-cCcc-C-CCC------------CHHHHHHHHHh----cCCCEE
Confidence            566789999999999999999998875 57887764 4321 1 111            12234555641    268999


Q ss_pred             EEcCCh---H---------------hHHHHHHHHHHcCCCeEE
Q 025154          111 IDFTDA---S---------------TVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       111 IDFT~p---~---------------~~~~~~~~a~~~Gi~vVi  135 (257)
                      |.+...   .               .....++.|.+.|+.+|.
T Consensus        68 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~  110 (292)
T 1vl0_A           68 INCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQ  110 (292)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEE
T ss_pred             EECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            987531   1               134566777787877663

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.63  E-value=0.0051  Score=53.66  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=25.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      .||+|+|+ |.+|..+++.+... ++.=+.++|..
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~-Gv~~i~lvD~d   64 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASA-GVGNLTLLDFD   64 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCSEEEEECCC
T ss_pred             CeEEEEee-CHHHHHHHHHHHHc-CCCeEEEEcCC
Confidence            58999996 99999999988754 66444567743

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.61  E-value=0.0079  Score=51.65  Aligned_cols=118  Identities=12%  Similarity=0.159  Sum_probs=68.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeee----e---cCHHHHHhccccCCCcc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKARA  108 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~---~dl~~~l~~~~~~~~~D  108 (257)
                      ||.|+|++|.+|+.+++.+.+. ++.++++......   ....+..    .++.+    .   ++++++++      ++|
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~---~~~~~~~----~~~~~~~~D~~d~~~~~~~~~------~~d   67 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPA---KAQALAA----QGITVRQADYGDEAALTSALQ------GVE   67 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTT---TCHHHHH----TTCEEEECCTTCHHHHHHHTT------TCS
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChH---hhhhhhc----CCCeEEEcCCCCHHHHHHHHh------CCC
Confidence            5899999999999999988765 4788887553221   1111110    12211    1   23344553      689


Q ss_pred             EEEEcCCh------HhHHHHHHHHHHcCCC-eE-EeCCCC------CHHHHHHHHHHhhhcCceEE-EccCchH
Q 025154          109 VVIDFTDA------STVYDNVKQATAFGMR-SV-VYVPHI------QLETVSALSAFCDKASMGCL-IAPTLSI  167 (257)
Q Consensus       109 VvIDFT~p------~~~~~~~~~a~~~Gi~-vV-iGTTG~------s~e~~~~L~~~a~~~gipvl-~spNfSl  167 (257)
                      +||....+      ..+...++.|.+.|+. +| +++.+-      -.......+++.++.|+++. +-|++=.
T Consensus        68 ~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~sK~~~e~~~~~~~~~~~ilrp~~~~  141 (286)
T 2zcu_A           68 KLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYS  141 (286)
T ss_dssp             EEEECC--------CHHHHHHHHHHHHTCCEEEEEEETTTTTCCSTTHHHHHHHHHHHHHHCSEEEEEEECCBH
T ss_pred             EEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCcchhHHHHHHHHHHHHHcCCCeEEEeChHHh
Confidence            99987643      3456677788888864 44 333221      12233456666666677755 4566533

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=96.55  E-value=0.0041  Score=57.16  Aligned_cols=100  Identities=20%  Similarity=0.190  Sum_probs=61.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhhcCC-----CCCCeeee--c
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVCDME-----QPLEIPVM--S   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~g~~~g~~-----~~~gv~v~--~   92 (257)
                      ++||+|.| .||+||.+.|++.+.  +++++|++-|+..             -|+--+++.-.+     ....+.++  .
T Consensus         2 ~~kv~ING-fGrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~   80 (335)
T 3doc_A            2 AVRVAING-FGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVR   80 (335)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECCS
T ss_pred             CEEEEEEC-CCcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEeec
Confidence            58999999 599999999998876  6899999877410             011111110000     01124443  2


Q ss_pred             CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEEeCC
Q 025154           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViGTT  138 (257)
                      |++++-=   .+.++|++++.|--....+.+...++.|.. |||-.+
T Consensus        81 dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsap  124 (335)
T 3doc_A           81 NPAELPW---KEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAP  124 (335)
T ss_dssp             STTSSCT---TTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             ccccccc---cccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCC
Confidence            4443210   013789999877666677888888888865 444333

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.54  E-value=0.0043  Score=55.82  Aligned_cols=87  Identities=15%  Similarity=0.075  Sum_probs=57.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .++|+|+|+ |.||+.+++.+....+++-+.++|+..  ..+..+..   ..+  +.++++++++++      .+|+||-
T Consensus       135 ~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~--~~~~~l~~---~~~~~~~~~~~~~e~v~------~aDiVi~  202 (312)
T 2i99_A          135 SEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTK--ENAEKFAD---TVQGEVRVCSSVQEAVA------GADVIIT  202 (312)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSH--HHHHHHHH---HSSSCCEECSSHHHHHT------TCSEEEE
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHH---HhhCCeEEeCCHHHHHh------cCCEEEE
Confidence            469999995 999999999988765676677787541  11222321   223  667789999885      6999987


Q ss_pred             cCChHhHHHHHH-HHHHcCCCeEE
Q 025154          113 FTDASTVYDNVK-QATAFGMRSVV  135 (257)
Q Consensus       113 FT~p~~~~~~~~-~a~~~Gi~vVi  135 (257)
                      .|. .. .+.+. ..++.|..++.
T Consensus       203 atp-~~-~~v~~~~~l~~g~~vi~  224 (312)
T 2i99_A          203 VTL-AT-EPILFGEWVKPGAHINA  224 (312)
T ss_dssp             CCC-CS-SCCBCGGGSCTTCEEEE
T ss_pred             EeC-CC-CcccCHHHcCCCcEEEe
Confidence            763 21 22221 35567877665

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.50  E-value=0.03  Score=52.05  Aligned_cols=115  Identities=14%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--------------CCCeeeecCHHHHHhcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--------------PLEIPVMSDLTMVLGSI  101 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~--------------~~gv~v~~dl~~~l~~~  101 (257)
                      |||+|+|+ |.||..++..+.+  ++++++ +|...  ..+..+...+.              ...+..++++++.+.  
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~--G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--   72 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL--QNEVTI-VDILP--SKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--   72 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--
T ss_pred             CEEEEECC-CHHHHHHHHHHhC--CCEEEE-EECCH--HHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--
Confidence            58999995 9999999988775  788665 56420  11111110000              113456778877775  


Q ss_pred             ccCCCccEEEEcCChH-----------hHHHHHHHH--HHcCCCeEE-eCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          102 SQSKARAVVIDFTDAS-----------TVYDNVKQA--TAFGMRSVV-YVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       102 ~~~~~~DVvIDFT~p~-----------~~~~~~~~a--~~~Gi~vVi-GTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                          .+|++|-...+.           .+.+.++..  +..|.-+|. .|.+...  .+++.+...+  -+++++|-|.
T Consensus        73 ----~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~--~~~l~~~~~~--~~v~~~Pe~~  143 (402)
T 1dlj_A           73 ----EAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGF--ITEMRQKFQT--DRIIFSPEFL  143 (402)
T ss_dssp             ----HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTH--HHHHHHHTTC--SCEEECCCCC
T ss_pred             ----CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccH--HHHHHHHhCC--CeEEECCccc
Confidence                689988776433           243333322  344544554 3444432  3345555444  2777777653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.49  E-value=0.0035  Score=55.87  Aligned_cols=116  Identities=12%  Similarity=0.112  Sum_probs=68.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++|+..  .....+.    +.|+.+  +.++++++.      .+|+||.
T Consensus       157 g~~v~IiG~-G~iG~~~a~~l~~-~G~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDvVi~  221 (300)
T 2rir_A          157 GSQVAVLGL-GRTGMTIARTFAA-LGANVK-VGARSS--AHLARIT----EMGLVPFHTDELKEHVK------DIDICIN  221 (300)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESSH--HHHHHHH----HTTCEEEEGGGHHHHST------TCSEEEE
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCeEEchhhHHHHhh------CCCEEEE
Confidence            468999995 9999999998764 577765 466531  1111111    123332  357888774      7999998


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      .+.+....+.....++.|.-+|--..|-..  .+ + +.+++.|+.++..||++-++
T Consensus       222 ~~p~~~i~~~~~~~mk~g~~lin~a~g~~~--~~-~-~~a~~~G~~~i~~pg~~g~v  274 (300)
T 2rir_A          222 TIPSMILNQTVLSSMTPKTLILDLASRPGG--TD-F-KYAEKQGIKALLAPGLPGIV  274 (300)
T ss_dssp             CCSSCCBCHHHHTTSCTTCEEEECSSTTCS--BC-H-HHHHHHTCEEEECCCHHHHH
T ss_pred             CCChhhhCHHHHHhCCCCCEEEEEeCCCCC--cC-H-HHHHHCCCEEEECCCCCCcH
Confidence            876533222222223444333322222111  11 3 45566788888999999877

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=96.49  E-value=0.0075  Score=53.57  Aligned_cols=44  Identities=14%  Similarity=0.132  Sum_probs=27.6

Q ss_pred             CccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           22 KRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        22 ~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +-+.....++. .++||.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus        15 ~~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   58 (343)
T 2b69_A           15 ENLYFQGHMEK-DRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVD   58 (343)
T ss_dssp             -------------CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             ccccccccccc-CCCEEEEEcCccHHHHHHHHHHHH-CCCEEEEEe
Confidence            33444444333 467999999999999999998875 478887654

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.43  E-value=0.013  Score=51.71  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      +|||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r   45 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRA-AGHDLVLIHR   45 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEec
Confidence            56999999999999999998875 4788887553

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.43  E-value=0.0029  Score=54.68  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=52.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||.|+|++|.+|+.+++.+.+ .+.++++.. +..  -|            +.-.++++++++.    .++|+||.+..
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~-r~~--~D------------~~d~~~~~~~~~~----~~~d~vi~~a~   65 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNP-EEYDIYPFD-KKL--LD------------ITNISQVQQVVQE----IRPHIIIHCAA   65 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCT-TTEEEEEEC-TTT--SC------------TTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHh-CCCEEEEec-ccc--cC------------CCCHHHHHHHHHh----cCCCEEEECCc
Confidence            5999999999999999998765 478877643 311  11            1112344556642    26999998752


Q ss_pred             ---hH---------------hHHHHHHHHHHcCCCeEE
Q 025154          116 ---AS---------------TVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       116 ---p~---------------~~~~~~~~a~~~Gi~vVi  135 (257)
                         +.               .+...++.|.+.|+.+|.
T Consensus        66 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~  103 (287)
T 3sc6_A           66 YTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVY  103 (287)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEE
T ss_pred             ccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence               11               134567888888887763

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.40  E-value=0.0068  Score=54.86  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAI   67 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~v   67 (257)
                      -.||+|.|+|++|.+|+.+++.+.+. + .++++..
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~   64 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLEL-GVNQVHVVD   64 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHc-CCceEEEEE
Confidence            34679999999999999999998864 6 8887653

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.40  E-value=0.011  Score=51.81  Aligned_cols=121  Identities=14%  Similarity=0.152  Sum_probs=71.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc--hhhhhcCCCCCCeee----ecC---HHHHHhccccCCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--IGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKA  106 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d--~g~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~  106 (257)
                      .||.|+|++|.+|+.+++.+.+. +.++.+...... ...  ...+.    ..++.+    .+|   +.++++      +
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~-~~~~~~~~l~----~~~v~~v~~Dl~d~~~l~~a~~------~   79 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNS-SKTTLLDEFQ----SLGAIIVKGELDEHEKLVELMK------K   79 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTC-SCHHHHHHHH----HTTCEEEECCTTCHHHHHHHHT------T
T ss_pred             CeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCC-chhhHHHHhh----cCCCEEEEecCCCHHHHHHHHc------C
Confidence            48999999999999999998864 678776543321 110  11111    112322    123   444553      7


Q ss_pred             ccEEEEcCCh---HhHHHHHHHHHHcC-CCeEEeCC-CCC--------H-----HHHHHHHHHhhhcCceEE-EccCchH
Q 025154          107 RAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-IAPTLSI  167 (257)
Q Consensus       107 ~DVvIDFT~p---~~~~~~~~~a~~~G-i~vViGTT-G~s--------~-----e~~~~L~~~a~~~gipvl-~spNfSl  167 (257)
                      +|+||..+.+   ......+..|.+.| +.-++-++ |.+        +     .....++++.++.++++. +.||+=.
T Consensus        80 ~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~lr~~~~~  159 (318)
T 2r6j_A           80 VDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANCFA  159 (318)
T ss_dssp             CSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECSCCSSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTCCBEEEECCEEH
T ss_pred             CCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEeeccccCcccccCCCCcchhHHHHHHHHHHHHhcCCCeEEEEcceeh
Confidence            9999988753   44567778888888 66555322 311        1     112346666676676654 5566544


Q ss_pred             H
Q 025154          168 G  168 (257)
Q Consensus       168 G  168 (257)
                      +
T Consensus       160 ~  160 (318)
T 2r6j_A          160 S  160 (318)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.40  E-value=0.0099  Score=53.99  Aligned_cols=91  Identities=18%  Similarity=0.155  Sum_probs=57.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++||+|+| +|.||+.+++.+.. .+++++ ++++..  ....+.+   ...|+.++ ++++++.      .+|+||-.+
T Consensus        16 ~~~I~IIG-~G~mG~alA~~L~~-~G~~V~-~~~~~~--~~~~~~a---~~~G~~~~-~~~e~~~------~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIG-YGSQGHAHACNLKD-SGVDVT-VGLRSG--SATVAKA---EAHGLKVA-DVKTAVA------AADVVMILT   80 (338)
T ss_dssp             TSCEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECCTT--CHHHHHH---HHTTCEEE-CHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEC-chHHHHHHHHHHHH-CcCEEE-EEECCh--HHHHHHH---HHCCCEEc-cHHHHHh------cCCEEEEeC
Confidence            46899999 59999999998875 567765 455431  1111111   12455556 8888875      799999888


Q ss_pred             ChHhHHHHHH-HH---HHcCCCeEEeCCCCC
Q 025154          115 DASTVYDNVK-QA---TAFGMRSVVYVPHIQ  141 (257)
Q Consensus       115 ~p~~~~~~~~-~a---~~~Gi~vViGTTG~s  141 (257)
                      .+....+.+. ..   ++.|. +|+-++|++
T Consensus        81 p~~~~~~v~~~~i~~~l~~~~-ivi~~~gv~  110 (338)
T 1np3_A           81 PDEFQGRLYKEEIEPNLKKGA-TLAFAHGFS  110 (338)
T ss_dssp             CHHHHHHHHHHHTGGGCCTTC-EEEESCCHH
T ss_pred             CcHHHHHHHHHHHHhhCCCCC-EEEEcCCch
Confidence            7777766665 32   22344 444455643

>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}

Probab=96.37  E-value=0.019  Score=53.76  Aligned_cols=138  Identities=13%  Similarity=0.184  Sum_probs=81.7

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhc--------------------CCcEEEEEEec--CCCCcchhhhhcC--------
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKA--------------------RGMEVAGAIDS--HSVGEDIGMVCDM--------   82 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~--------------------~~~eLvg~vd~--~~~g~d~g~~~g~--------   82 (257)
                      -.|+||+|+|. |..++.+++-+...                    ++.++++++|.  .+.|+++.+..-.        
T Consensus        11 ~~mIrVaIvGv-GnvASTlvqGv~~~r~g~~~~~G~p~~~~~p~~~~Di~vvgg~DId~~kvgk~l~eAi~~~~n~~~~~   89 (394)
T 3cin_A           11 HHMVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSL   89 (394)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCC
T ss_pred             cceeEEEEecC-CHHHHHHHHHHHHHHcCCCCCccccccccCCCCCCCcEEEEEecCCcchhHHHHHHHHhhchhccccc
Confidence            36999999996 99999998877421                    35678999993  4667776543200        


Q ss_pred             CC--CC----------Cee-------ee----cCHHHHHhccccCCCccEEEEcC------Ch---H-------------
Q 025154           83 EQ--PL----------EIP-------VM----SDLTMVLGSISQSKARAVVIDFT------DA---S-------------  117 (257)
Q Consensus        83 ~~--~~----------gv~-------v~----~dl~~~l~~~~~~~~~DVvIDFT------~p---~-------------  117 (257)
                      ..  +.          +.+       ..    .+.+++..+ .++.+.||+|...      .+   +             
T Consensus        90 ~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~i~~~~k~-~~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~  168 (394)
T 3cin_A           90 TSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKE-WTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKER  168 (394)
T ss_dssp             SSCCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHH-HHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTT
T ss_pred             cCccccccCcccccccCcCccccchhhhhhHHHhHHHHHHH-hhhccceeEeeecccccCCCCCCHHHHHHHhhcccccc
Confidence            00  00          000       00    112222110 0113678999732      11   1             


Q ss_pred             --hHHHHHHHHH-----HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154          118 --TVYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (257)
Q Consensus       118 --~~~~~~~~a~-----~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~  174 (257)
                        ++.-++..|+     +.|++.|-|++-|... ...+.++++++|+|++= --|-.|-.++..
T Consensus       169 i~as~~YA~AAl~~aa~~aG~~fvN~~P~~ia~-~P~~~ela~~~gvpi~G-dD~ktG~T~~k~  230 (394)
T 3cin_A          169 LTATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFG-DDGATGATPFTA  230 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEEC-SSBSCSHHHHHH
T ss_pred             CChhHHHHHHHHHhhhhhcCCceecCCCccccC-cHHHHHHHHHcCCcEec-ccccccchhHHH
Confidence              2223334444     8999999999977642 24688889998988873 337888875433

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.37  E-value=0.0079  Score=52.83  Aligned_cols=127  Identities=14%  Similarity=0.122  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCc---chhhhhcCCCCCCeee----ec---CHHHHHhcccc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE---DIGMVCDMEQPLEIPV----MS---DLTMVLGSISQ  103 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~---d~g~~~g~~~~~gv~v----~~---dl~~~l~~~~~  103 (257)
                      .|++|.|+|++|.+|+.+++.+.+. +.++.+.......+.   ....+... ...++.+    ..   ++.++++    
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~l~~~-~~~~v~~v~~D~~d~~~l~~a~~----   76 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSF-SHPTFIYARPLTPDSTPSSVQLREEF-RSMGVTIIEGEMEEHEKMVSVLK----   76 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECCCCTTCCHHHHHHHHHH-HHTTCEEEECCTTCHHHHHHHHT----
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhC-CCcEEEEECCcccccChHHHHHHHHh-hcCCcEEEEecCCCHHHHHHHHc----
Confidence            3678999999999999999998864 678776543220110   01101000 0112322    12   3445553    


Q ss_pred             CCCccEEEEcCCh---HhHHHHHHHHHHcC-CCeEEeCC-CCCH-------------HHHHHHHHHhhhcCceEE-EccC
Q 025154          104 SKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQL-------------ETVSALSAFCDKASMGCL-IAPT  164 (257)
Q Consensus       104 ~~~~DVvIDFT~p---~~~~~~~~~a~~~G-i~vViGTT-G~s~-------------e~~~~L~~~a~~~gipvl-~spN  164 (257)
                        .+|+||....+   ......+..|.+.| +.-++-+. |.+.             .....++++.++.++++. +.||
T Consensus        77 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~lrp~  154 (321)
T 3c1o_A           77 --QVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSAN  154 (321)
T ss_dssp             --TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCCSSCGGGCCCCHHHHHHHHHHHHHHHHHHHHTCCBEEEECC
T ss_pred             --CCCEEEECCCccchhhHHHHHHHHHHhCCccEEeccccccCccccccCCCcchHHHHHHHHHHHHHHcCCCeEEEEec
Confidence              69999988653   45667788888888 65444322 3211             012345666666565543 4576


Q ss_pred             chHH
Q 025154          165 LSIG  168 (257)
Q Consensus       165 fSlG  168 (257)
                      +=.|
T Consensus       155 ~~~~  158 (321)
T 3c1o_A          155 CFGA  158 (321)
T ss_dssp             EEHH
T ss_pred             eecc
Confidence            6544

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.34  E-value=0.017  Score=49.89  Aligned_cols=94  Identities=19%  Similarity=0.158  Sum_probs=55.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC----eee-ecCHHHHHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPV-MSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g----v~v-~~dl~~~l~~~~~~~~~DVv  110 (257)
                      |||+|+|+ |.||..++..+.+ .+.++.. +++...  ....+.... ..+    ..+ .++. +.+.      ++|+|
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~r~~~--~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~------~~d~v   67 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCK-QGHEVQG-WLRVPQ--PYCSVNLVE-TDGSIFNESLTANDP-DFLA------TSDLL   67 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC--SEEEEEEEC-TTSCEEEEEEEESCH-HHHH------TCSEE
T ss_pred             CeEEEECc-CHHHHHHHHHHHh-CCCCEEE-EEcCcc--ceeeEEEEc-CCCceeeeeeeecCc-cccC------CCCEE
Confidence            58999996 9999999998874 5677654 554311  111111000 011    111 3444 4453      69999


Q ss_pred             EEcCChHhHHHHHHHHHH---cCCCeEEeCCCCCH
Q 025154          111 IDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~  142 (257)
                      |-...+..+.+.+.....   .+..+|.-++|++.
T Consensus        68 i~~v~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           68 LVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             EECSCGGGHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             EEEecHHhHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            988777766665554433   35667766778754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.33  E-value=0.043  Score=48.60  Aligned_cols=89  Identities=13%  Similarity=0.182  Sum_probs=56.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +.||+|+|+.|.||..+++.+.. .++++. ++|+..   +                .++++++.      .+|+||-..
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~-~G~~V~-~~~~~~---~----------------~~~~~~~~------~aDvVilav   73 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRA-SGYPIS-ILDRED---W----------------AVAESILA------NADVVIVSV   73 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHT-TTCCEE-EECTTC---G----------------GGHHHHHT------TCSEEEECS
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHh-CCCeEE-EEECCc---c----------------cCHHHHhc------CCCEEEEeC
Confidence            46999999449999999998874 466655 345421   0                13455563      789999888


Q ss_pred             ChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHH
Q 025154          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAF  151 (257)
Q Consensus       115 ~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~  151 (257)
                      .|....+.+.....   .+. +|+-+++......+.+.+.
T Consensus        74 p~~~~~~vl~~l~~~l~~~~-iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           74 PINLTLETIERLKPYLTENM-LLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             CGGGHHHHHHHHGGGCCTTS-EEEECCSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcCCCc-EEEECCCCCcHHHHHHHHh
Confidence            88777776665433   233 5655556555444555443

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.31  E-value=0.012  Score=51.18  Aligned_cols=126  Identities=18%  Similarity=0.180  Sum_probs=70.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-cc-hhhhhcCCCCCCeee----ecC---HHHHHhccccCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-ED-IGMVCDMEQPLEIPV----MSD---LTMVLGSISQSK  105 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d-~g~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~  105 (257)
                      |++|.|+|++|.+|+.+++.+.+. +.++++........ .+ ...+... ...++.+    ..|   +.++++      
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~l~~~~~------   75 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYF-KQLGAKLIEASLDDHQRLVDALK------   75 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCCSSCHHHHHHHHHH-HTTTCEEECCCSSCHHHHHHHHT------
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCcEEEEECCCcccchhHHHHHHHH-HhCCeEEEeCCCCCHHHHHHHHh------
Confidence            678999999999999999998764 67877644321100 00 1111000 0123322    123   445553      


Q ss_pred             CccEEEEcCCh-------HhHHHHHHHHHHcC-CCeEEeC-CCCC---------H-----HHHHHHHHHhhhcCceEE-E
Q 025154          106 ARAVVIDFTDA-------STVYDNVKQATAFG-MRSVVYV-PHIQ---------L-----ETVSALSAFCDKASMGCL-I  161 (257)
Q Consensus       106 ~~DVvIDFT~p-------~~~~~~~~~a~~~G-i~vViGT-TG~s---------~-----e~~~~L~~~a~~~gipvl-~  161 (257)
                      ++|+||..+.+       ......+..|.+.| +.-++-+ -|.+         +     .....++++.++.|+++. +
T Consensus        76 ~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~~p~~~~y~sK~~~e~~~~~~g~~~~il  155 (313)
T 1qyd_A           76 QVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYV  155 (313)
T ss_dssp             TCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCCCCCSSTTHHHHHHHHHHHHHHHTTCCBCEE
T ss_pred             CCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEEecCCcCCccccccCCCCCcchHHHHHHHHHHHHhcCCCeEEE
Confidence            79999987632       35567788888888 6544422 1310         0     122346666666666643 3


Q ss_pred             ccCchHH
Q 025154          162 APTLSIG  168 (257)
Q Consensus       162 spNfSlG  168 (257)
                      -|++=.|
T Consensus       156 rp~~~~~  162 (313)
T 1qyd_A          156 SSNMFAG  162 (313)
T ss_dssp             ECCEEHH
T ss_pred             Eeceecc
Confidence            4555444

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=96.29  E-value=0.013  Score=54.10  Aligned_cols=100  Identities=22%  Similarity=0.237  Sum_probs=60.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhhcCC-----CCCCeeee--c
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVCDME-----QPLEIPVM--S   92 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g~~~g~~-----~~~gv~v~--~   92 (257)
                      .|+||+|+| .||+||.+++.+.+.+ ++++++-|+..              -|+--+++.-.+     ....+.++  .
T Consensus         6 ~~~kvgInG-FGRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~   83 (346)
T 3h9e_O            6 RELTVGING-FGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCK   83 (346)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CeeEEEEEC-CChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEecC
Confidence            478999999 5999999999887664 99999887410              011111110000     00123343  2


Q ss_pred             CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCC-CeEEeCC
Q 025154           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi-~vViGTT  138 (257)
                      |++++-=   .+.++|++++.|-.....+.+...++.|. .+||-.+
T Consensus        84 dp~~i~W---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsap  127 (346)
T 3h9e_O           84 EPKQIPW---RAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAP  127 (346)
T ss_dssp             SGGGCCG---GGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSC
T ss_pred             ChhhCCc---ccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence            4443310   01268999988777777788888888886 3555443

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.27  E-value=0.012  Score=51.18  Aligned_cols=125  Identities=13%  Similarity=0.145  Sum_probs=71.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCc---c-hhhhhcCCCCCCeee----ec---CHHHHHhcccc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE---D-IGMVCDMEQPLEIPV----MS---DLTMVLGSISQ  103 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~---d-~g~~~g~~~~~gv~v----~~---dl~~~l~~~~~  103 (257)
                      |+||.|+|++|.+|+.+++.+.+. +.++.+. ++.....   + ...+... ...++.+    .+   ++.++++    
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l-~R~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~l~~~~~----   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDL-GHPTFLL-VRESTASSNSEKAQLLESF-KASGANIVHGSIDDHASLVEAVK----   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEE-CCCCCTTTTHHHHHHHHHH-HTTTCEEECCCTTCHHHHHHHHH----
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCCEEEE-ECCcccccCHHHHHHHHHH-HhCCCEEEEeccCCHHHHHHHHc----
Confidence            678999999999999999998864 6777654 3321111   0 0000000 0123322    12   3445554    


Q ss_pred             CCCccEEEEcCCh---HhHHHHHHHHHHcC-CCeEEeCC-CCC--------H-----HHHHHHHHHhhhcCceEE-EccC
Q 025154          104 SKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-IAPT  164 (257)
Q Consensus       104 ~~~~DVvIDFT~p---~~~~~~~~~a~~~G-i~vViGTT-G~s--------~-----e~~~~L~~~a~~~gipvl-~spN  164 (257)
                        ++|+||....+   ......+..|.+.| +.-++-.+ |.+        +     .....++++.++.|+++. +.||
T Consensus        77 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~~r~~  154 (308)
T 1qyc_A           77 --NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSN  154 (308)
T ss_dssp             --TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHHHHHHHHHHHHHHHHHHTCCBEEEECC
T ss_pred             --CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEeecccccCccccccCCcchhHHHHHHHHHHHHHhcCCCeEEEEec
Confidence              69999988753   34567778888888 65555322 311        1     112345666666666644 4566


Q ss_pred             chHH
Q 025154          165 LSIG  168 (257)
Q Consensus       165 fSlG  168 (257)
                      +=.|
T Consensus       155 ~~~~  158 (308)
T 1qyc_A          155 CFAG  158 (308)
T ss_dssp             EEHH
T ss_pred             eecc
Confidence            5444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.25  E-value=0.012  Score=49.42  Aligned_cols=84  Identities=14%  Similarity=0.250  Sum_probs=52.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-e-ee----cCHHHHHhccccCCCcc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-P-VM----SDLTMVLGSISQSKARA  108 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~-v~----~dl~~~l~~~~~~~~~D  108 (257)
                      .+||.|+|++|.+|+.+++.+.+ .+.++++...+.   .....+..    .++ . +.    +++.+.+.      ++|
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~-~G~~V~~~~R~~---~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~------~~D   86 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKN-KGHEPVAMVRNE---EQGPELRE----RGASDIVVANLEEDFSHAFA------SID   86 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSG---GGHHHHHH----TTCSEEEECCTTSCCGGGGT------TCS
T ss_pred             CCeEEEECCCChHHHHHHHHHHh-CCCeEEEEECCh---HHHHHHHh----CCCceEEEcccHHHHHHHHc------CCC
Confidence            47999999999999999999875 578887755321   11222211    122 1 11    44455553      799


Q ss_pred             EEEEcCCh--------------HhHHHHHHHHHHcCCC
Q 025154          109 VVIDFTDA--------------STVYDNVKQATAFGMR  132 (257)
Q Consensus       109 VvIDFT~p--------------~~~~~~~~~a~~~Gi~  132 (257)
                      +||....+              ......++.|.+.+..
T Consensus        87 ~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  124 (236)
T 3e8x_A           87 AVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIK  124 (236)
T ss_dssp             EEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCC
Confidence            99987532              1234566667677654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.22  E-value=0.018  Score=51.10  Aligned_cols=34  Identities=24%  Similarity=0.186  Sum_probs=28.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .++||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   57 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLK-LNQVVIGLDN   57 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            357999999999999999998875 5788887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.18  E-value=0.0077  Score=46.88  Aligned_cols=125  Identities=11%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---cCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (257)
                      |.+|.|+|+ |++|+.+++.+.+ .+.+++. +|...  .....+.    ..++.+ +   .+.+.+.+.  .-.++|++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~-~g~~V~~-id~~~--~~~~~~~----~~~~~~~~gd~~~~~~l~~~--~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTA-AGKKVLA-VDKSK--EKIELLE----DEGFDAVIADPTDESFYRSL--DLEGVSAV   74 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH----HTTCEEEECCTTCHHHHHHS--CCTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCeEEE-EECCH--HHHHHHH----HCCCcEEECCCCCHHHHHhC--CcccCCEE
Confidence            568999996 9999999998875 4777764 55431  1111121    112222 2   233222210  01368988


Q ss_pred             EEcCCh-HhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154          111 IDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       111 IDFT~p-~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~  175 (257)
                      |..+.. +.....+..+.+.+...|+... -+.+..+.+    ++.|+-.+++|....|-.+...+
T Consensus        75 i~~~~~~~~n~~~~~~a~~~~~~~iia~~-~~~~~~~~l----~~~G~~~vi~p~~~~~~~l~~~i  135 (141)
T 3llv_A           75 LITGSDDEFNLKILKALRSVSDVYAIVRV-SSPKKKEEF----EEAGANLVVLVADAVKQAFMDKI  135 (141)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCCCCEEEEE-SCGGGHHHH----HHTTCSEEEEHHHHHHHHHHHHH
T ss_pred             EEecCCHHHHHHHHHHHHHhCCceEEEEE-cChhHHHHH----HHcCCCEEECHHHHHHHHHHHHH
Confidence            876653 3334445555566644444333 223334445    34678889999888887665544

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=96.18  E-value=0.01  Score=54.93  Aligned_cols=96  Identities=24%  Similarity=0.201  Sum_probs=57.6

Q ss_pred             CceEEEEcCCChHHHHHHHH----HHhcCCcEEEEEEecCC--------------CCcchhhhhc--------CCC----
Q 025154           35 NIKVIINGAVKEIGRAAVIA----VTKARGMEVAGAIDSHS--------------VGEDIGMVCD--------MEQ----   84 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~----i~~~~~~eLvg~vd~~~--------------~g~d~g~~~g--------~~~----   84 (257)
                      ++||+|.| .||+||.+.++    +.+.+++++|++-|+..              -|+--+++.-        .+.    
T Consensus         2 ~~kv~ING-FGrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l~i   80 (359)
T 3ids_C            2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV   80 (359)
T ss_dssp             CEEEEEEC-TTHHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEEEE
T ss_pred             ceEEEEEC-CChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEEEE
Confidence            58999999 59999999998    56667899999987310              0110011100        000    


Q ss_pred             -CCCeeeec---CHHHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCC-eEE
Q 025154           85 -PLEIPVMS---DLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVV  135 (257)
Q Consensus        85 -~~gv~v~~---dl~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vVi  135 (257)
                       ...+.++.   |++++- .+    .++|+|++.|--....+.+...++.|.. |||
T Consensus        81 nGk~I~v~~~e~dp~~i~w~~----~gvDiVlesTG~f~s~e~A~~hl~aGAkkViI  133 (359)
T 3ids_C           81 NGHRILCVKAQRNPADLPWGK----LGVEYVIESTGLFTAKAAAEGHLRGGARKVVI  133 (359)
T ss_dssp             TTEEEEECCCCSSTTTSCHHH----HTCCEEEECSSSCCBHHHHTHHHHTTCCEEEE
T ss_pred             CCEEEEEEEccCCcccCCccc----cCccEEEEeccccCCHHHHHHHHHcCCCEEEE
Confidence             01233442   333321 00    2688989877666667777788888865 444

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=96.17  E-value=0.034  Score=48.49  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=24.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |++|.|+|++|.+|+.+++.+.+. + .++.+..
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~-g-~~v~~~~   32 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSES-N-EIVVIDN   32 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTT-S-CEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhC-C-CEEEEEc
Confidence            679999999999999999988754 4 5555443

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.17  E-value=0.047  Score=51.47  Aligned_cols=136  Identities=13%  Similarity=0.153  Sum_probs=78.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCC------C-CeeeecCHHHHHhcccc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQP------L-EIPVMSDLTMVLGSISQ  103 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~------~-gv~v~~dl~~~l~~~~~  103 (257)
                      .||+|.| .|.||+..++.+.+..+.+++++.|+.     ..|-|...+......      + +.. +-+.++++.    
T Consensus       210 ~~vaVqG-~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~-~~~~~eil~----  283 (415)
T 2tmg_A          210 ATVAVQG-FGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLE----  283 (415)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSE-EECHHHHTT----
T ss_pred             CEEEEEC-CcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCce-EcCchhhhc----
Confidence            6899999 599999999987753799999999953     234454333211000      0 111 124567775    


Q ss_pred             CCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEE--EccCchHHHHH-HHHHHHH
Q 025154          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCL--IAPTLSIGSIL-LQQAAIS  178 (257)
Q Consensus       104 ~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl--~spNfSlGvnl-l~~~a~~  178 (257)
                       .++||+|.++.....  +..-+.+.+..+|++--  .++++..+.|    +++|+.++  +..|-. ||.. -.+..+-
T Consensus       284 -~~~DIliP~A~~n~i--~~~~a~~l~ak~V~EgAN~p~t~~a~~~l----~~~Gi~~~PD~~aNaG-GV~~s~~E~vqN  355 (415)
T 2tmg_A          284 -LDVDILVPAALEGAI--HAGNAERIKAKAVVEGANGPTTPEADEIL----SRRGILVVPDILANAG-GVTVSYFEWVQD  355 (415)
T ss_dssp             -CSCSEEEECSSTTSB--CHHHHTTCCCSEEECCSSSCBCHHHHHHH----HHTTCEEECHHHHTCH-HHHHHHHHHHHH
T ss_pred             -CCCcEEEecCCcCcc--CcccHHHcCCeEEEeCCCcccCHHHHHHH----HHCCCEEEChHHHhCC-CceEEEEEEEec
Confidence             489999998765443  12333455888888765  4565443333    24445444  334533 6654 1123334


Q ss_pred             hcCCCCC
Q 025154          179 ASFHYKN  185 (257)
Q Consensus       179 l~~~~~D  185 (257)
                      +...+|+
T Consensus       356 ~~~~~w~  362 (415)
T 2tmg_A          356 LQSFFWD  362 (415)
T ss_dssp             HTTCCCC
T ss_pred             CccccCC
Confidence            4434454

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.16  E-value=0.01  Score=52.66  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..+|+|+| .|+||+.+++.+. .-++++. ++|+..  .....+.    ..|+..  +.++++++.      .+|+||.
T Consensus       155 g~~v~IiG-~G~iG~~~a~~l~-~~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDvVi~  219 (293)
T 3d4o_A          155 GANVAVLG-LGRVGMSVARKFA-ALGAKVK-VGARES--DLLARIA----EMGMEPFHISKAAQELR------DVDVCIN  219 (293)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EEESSH--HHHHHHH----HTTSEEEEGGGHHHHTT------TCSEEEE
T ss_pred             CCEEEEEe-eCHHHHHHHHHHH-hCCCEEE-EEECCH--HHHHHHH----HCCCeecChhhHHHHhc------CCCEEEE
Confidence            45899999 4999999999876 4567765 466531  1111111    123333  357788774      7999998


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      .+.+....+.....++.|.-+| =+. |-..  .+ + +.+++.|+.++..||+.-.+
T Consensus       220 ~~p~~~i~~~~l~~mk~~~~li-n~ar~~~~--~~-~-~~a~~~Gv~~~~~~~l~~~v  272 (293)
T 3d4o_A          220 TIPALVVTANVLAEMPSHTFVI-DLASKPGG--TD-F-RYAEKRGIKALLVPGLPGIV  272 (293)
T ss_dssp             CCSSCCBCHHHHHHSCTTCEEE-ECSSTTCS--BC-H-HHHHHHTCEEEECCCHHHHH
T ss_pred             CCChHHhCHHHHHhcCCCCEEE-EecCCCCC--CC-H-HHHHHCCCEEEECCCCCccc
Confidence            8754322222222344444333 332 2111  11 2 44566788888899998777

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.15  E-value=0.014  Score=50.75  Aligned_cols=93  Identities=20%  Similarity=0.269  Sum_probs=56.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc----hhhhhcCCCCCCeee----ecC---HHHHHhcccc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED----IGMVCDMEQPLEIPV----MSD---LTMVLGSISQ  103 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d----~g~~~g~~~~~gv~v----~~d---l~~~l~~~~~  103 (257)
                      |++|.|+|++|.+|+.+++.+.+. +.++++...+.....+    ...+... ...++.+    ..|   +.++++    
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~l~~~~~----   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKTITAANPETKEELIDNY-QSLGVILLEGDINDHETLVKAIK----   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCSCCSSCHHHHHHHHHHH-HHTTCEEEECCTTCHHHHHHHHT----
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCCcccCChHHHHHHHHHH-HhCCCEEEEeCCCCHHHHHHHHh----
Confidence            678999999999999999998865 5777764432201111    1001000 0112322    123   344553    


Q ss_pred             CCCccEEEEcCC---hHhHHHHHHHHHHcC-CCeEE
Q 025154          104 SKARAVVIDFTD---ASTVYDNVKQATAFG-MRSVV  135 (257)
Q Consensus       104 ~~~~DVvIDFT~---p~~~~~~~~~a~~~G-i~vVi  135 (257)
                        .+|+||....   .......+..|.+.| +.-++
T Consensus        76 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           76 --QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             --TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             --CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence              6999998764   355677788888888 65554

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.13  E-value=0.042  Score=48.27  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=28.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |||.|+|++|.+|+.+++.+.+.++.++++...
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   33 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence            589999999999999999998766888887543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.13  E-value=0.068  Score=48.44  Aligned_cols=74  Identities=18%  Similarity=0.125  Sum_probs=45.9

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchhhhhc-CCCCCCeeeecCHHHHHhccccCCC
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g--~d~g~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      +.++||+|+|+ |.||..++..++...-++ +..+|....   +  .+...... ...+..+..++|+++.+.      +
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~------~   78 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT------G   78 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT------T
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC------C
Confidence            33579999997 999999999887643237 667875421   1  11111100 001234555789987774      7


Q ss_pred             ccEEEEcC
Q 025154          107 RAVVIDFT  114 (257)
Q Consensus       107 ~DVvIDFT  114 (257)
                      +|+||...
T Consensus        79 aDiVi~a~   86 (331)
T 1pzg_A           79 ADCVIVTA   86 (331)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEcc
Confidence            99988653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.12  E-value=0.0078  Score=55.41  Aligned_cols=98  Identities=11%  Similarity=0.115  Sum_probs=61.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeeec-
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVMS-   92 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----~~g~~~~~gv~v~~-   92 (257)
                      ..||.|+|+ |..|..+++.+.. .++.=+.++|...                .|+.-.+     +..+.....+..+. 
T Consensus        34 ~~~VlIvGa-GGlGs~va~~La~-aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~  111 (340)
T 3rui_A           34 NTKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL  111 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-cCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEec
Confidence            358999996 9999999999874 5776666777321                1111111     11110011121121 


Q ss_pred             --------------------CHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154           93 --------------------DLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus        93 --------------------dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                                          ++.+++.      ++|+|||.| ++++-...-..|.++|+|+|.+..||
T Consensus       112 ~i~~~g~~~~~~~~~~~~~~~l~~~l~------~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa~G~  174 (340)
T 3rui_A          112 SIPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGF  174 (340)
T ss_dssp             CCCCTTSCCSCHHHHHHHHHHHHHHHH------HCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEEECS
T ss_pred             cccccCcccchhhhhcCCHHHHHhhhc------cCCEEEecCCCHHHHHHHHHHHHHcCCcEEEeeecc
Confidence                                2344554      689999998 45655667789999999999876565

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.12  E-value=0.015  Score=50.49  Aligned_cols=33  Identities=27%  Similarity=0.293  Sum_probs=27.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~v   67 (257)
                      ++||.|+|++|.+|+.+++.+.+. ++.++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~   35 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASD   35 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEc
Confidence            368999999999999999998876 477877654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.08  E-value=0.016  Score=50.72  Aligned_cols=81  Identities=12%  Similarity=0.045  Sum_probs=50.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +|||.|+|++|.+|+.+++.+.+ .+.++++. ++... -|            +.-.++++++++.    .++|+||.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~-~g~~v~~~-~r~~~-~D------------~~d~~~~~~~~~~----~~~d~vih~a   63 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVL-RTRDE-LN------------LLDSRAVHDFFAS----ERIDQVYLAA   63 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTT-CTTEEEEC-CCTTT-CC------------TTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCeEEEE-ecCcc-CC------------ccCHHHHHHHHHh----cCCCEEEEcC
Confidence            47999999999999999998875 57777663 32210 01            1112344555542    2699999875


Q ss_pred             Ch-------------------HhHHHHHHHHHHcCC-CeE
Q 025154          115 DA-------------------STVYDNVKQATAFGM-RSV  134 (257)
Q Consensus       115 ~p-------------------~~~~~~~~~a~~~Gi-~vV  134 (257)
                      .+                   ......++.|.+.++ .+|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  103 (321)
T 1e6u_A           64 AKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLL  103 (321)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            31                   122355677778887 444

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.07  E-value=0.021  Score=50.20  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=27.7

Q ss_pred             CCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |++.++||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r   46 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLE-KGYRVHGLVA   46 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHH-CCCeEEEEeC
Confidence            566789999999999999999998876 4788887554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.05  E-value=0.054  Score=50.74  Aligned_cols=120  Identities=15%  Similarity=0.158  Sum_probs=71.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ec---CHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVv  110 (257)
                      .++|.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  ..+..+.    ..|+++ +.   +.+- +.+. .-.++|+|
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~-~g~~vvv-Id~d~--~~v~~~~----~~g~~vi~GDat~~~~-L~~a-gi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLS-SGVKMVV-LDHDP--DHIETLR----KFGMKVFYGDATRMDL-LESA-GAAKAEVL   72 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCEEE-EECCH--HHHHHHH----HTTCCCEESCTTCHHH-HHHT-TTTTCSEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHHH----hCCCeEEEcCCCCHHH-HHhc-CCCccCEE
Confidence            468999995 9999999998874 5777764 56431  1111111    223433 22   3322 2210 00368988


Q ss_pred             EEcCC-hHhHHHHHHHHHHcCCC--eEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          111 IDFTD-ASTVYDNVKQATAFGMR--SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       111 IDFT~-p~~~~~~~~~a~~~Gi~--vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      |-.+. ++.....+..+.+.+.+  +|+=+  .+.++.+.|.+    .|+-.++.|+|-.|..|
T Consensus        73 iv~~~~~~~n~~i~~~ar~~~p~~~Iiara--~~~~~~~~L~~----~Gad~Vi~~~~~~a~~l  130 (413)
T 3l9w_A           73 INAIDDPQTNLQLTEMVKEHFPHLQIIARA--RDVDHYIRLRQ----AGVEKPERETFEGALKT  130 (413)
T ss_dssp             EECCSSHHHHHHHHHHHHHHCTTCEEEEEE--SSHHHHHHHHH----TTCSSCEETTHHHHHHH
T ss_pred             EECCCChHHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHH----CCCCEEECccHHHHHHH
Confidence            86664 55556667777777755  44322  34555566643    56778899999888765

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.05  E-value=0.021  Score=50.55  Aligned_cols=89  Identities=21%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..+++|.|+|++|.+|+.+++.+.+ .+.++++...... ...+..+     ..++.-.++++++++      ++|+||.
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~-~~~~~~~-----~~Dl~d~~~~~~~~~------~~d~vih   83 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRT-QGRTVRGFDLRPS-GTGGEEV-----VGSLEDGQALSDAIM------GVSAVLH   83 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHH-TTCCEEEEESSCC-SSCCSEE-----ESCTTCHHHHHHHHT------TCSEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHh-CCCEEEEEeCCCC-CCCccEE-----ecCcCCHHHHHHHHh------CCCEEEE
Confidence            4468999999999999999998875 4788877543221 1000000     011111223455563      7999998


Q ss_pred             cCCh----------------HhHHHHHHHHHHcCC-CeE
Q 025154          113 FTDA----------------STVYDNVKQATAFGM-RSV  134 (257)
Q Consensus       113 FT~p----------------~~~~~~~~~a~~~Gi-~vV  134 (257)
                      +..+                ..+...++.|.+.|+ .+|
T Consensus        84 ~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V  122 (347)
T 4id9_A           84 LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFV  122 (347)
T ss_dssp             CCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            6421                123556778888887 444

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.04  E-value=0.037  Score=46.39  Aligned_cols=144  Identities=15%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ec---CHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVvI  111 (257)
                      |||.|+|+ |+||+.+++.+.+ .+.+++ ++|...  ..+..+..   ..++.+ +.   +.+.+.+.  .-.++|++|
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~-~g~~v~-vid~~~--~~~~~l~~---~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLS-RKYGVV-IINKDR--ELCEEFAK---KLKATIIHGDGSHKEILRDA--EVSKNDVVV   70 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHH-TTCCEE-EEESCH--HHHHHHHH---HSSSEEEESCTTSHHHHHHH--TCCTTCEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHHH---HcCCeEEEcCCCCHHHHHhc--CcccCCEEE
Confidence            68999995 9999999998875 577777 456431  11112211   123322 22   22222110  003789988


Q ss_pred             EcCChHhHHHHH-HHHHH-cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHH----hcCCCCC
Q 025154          112 DFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS----ASFHYKN  185 (257)
Q Consensus       112 DFT~p~~~~~~~-~~a~~-~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~----l~~~~~D  185 (257)
                      -.+..+.....+ ..+.+ ++..-++.... +++..+.+    ++.|+-.+++|....+-.+...+...    +.....+
T Consensus        71 ~~~~~d~~n~~~~~~a~~~~~~~~iia~~~-~~~~~~~l----~~~G~d~vi~p~~~~~~~l~~~~~~~~~~~~~~~~~~  145 (218)
T 3l4b_C           71 ILTPRDEVNLFIAQLVMKDFGVKRVVSLVN-DPGNMEIF----KKMGITTVLNLTTLITNTVEALIFPDEFSSIIPLEQG  145 (218)
T ss_dssp             ECCSCHHHHHHHHHHHHHTSCCCEEEECCC-SGGGHHHH----HHHTCEECCCHHHHHHHHHHHHHCTTSCEECSCCSTT
T ss_pred             EecCCcHHHHHHHHHHHHHcCCCeEEEEEe-CcchHHHH----HHCCCCEEECHHHHHHHHHHHHhccCCceEEEEeCCC
Confidence            777555443333 34444 56665655443 23344445    44567788888877666544333210    0011224


Q ss_pred             eEEEeccCC
Q 025154          186 VEIVESRPN  194 (257)
Q Consensus       186 iEIiE~HH~  194 (257)
                      +++.|..=.
T Consensus       146 ~~~~e~~v~  154 (218)
T 3l4b_C          146 IEFLSVNVE  154 (218)
T ss_dssp             EEEEEEECC
T ss_pred             cEEEEEEEC
Confidence            777776543

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.03  E-value=0.013  Score=49.08  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~v   67 (257)
                      .+++|.|+|++|.+|+.+++.+.+.. +.++++..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~   37 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   37 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEE
Confidence            36789999999999999999998765 78888754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.01  E-value=0.0069  Score=54.24  Aligned_cols=117  Identities=14%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh----hhc-CCCCC---CeeeecCHHHHHhccccCCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM----VCD-MEQPL---EIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~----~~g-~~~~~---gv~v~~dl~~~l~~~~~~~~  106 (257)
                      +|||+|+|+ |.||..++..+.+ .+.++.. +++... +.+.+    +.+ .....   .+.++++++++.      ..
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~-~g~~V~~-~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~------~~   71 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAK-TGHCVSV-VSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELE------TK   71 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHH-TTCEEEE-ECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCS------SC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHh-CCCeEEE-EeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcC------CC
Confidence            479999996 9999999998875 4666654 454321 11111    000 00000   234567777654      27


Q ss_pred             ccEEEEcCChHhHHHHH---HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          107 RAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~---~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      +|+||-++.+....+.+   ...+..+..+|+-..|+..+  +.|++....  -.++.++.|
T Consensus        72 ~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~--~~l~~~~~~--~~vl~g~~~  129 (320)
T 3i83_A           72 PDCTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE--PEVAAAFPD--NEVISGLAF  129 (320)
T ss_dssp             CSEEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS--HHHHHHSTT--SCEEEEEEE
T ss_pred             CCEEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH--HHHHHHCCC--CcEEEEEEE
Confidence            89999777554443333   33344566777777898643  245554433  245555444

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=94.97  E-value=0.0012  Score=55.94  Aligned_cols=91  Identities=12%  Similarity=0.058  Sum_probs=54.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ..|||+|+|+ |.||+.+++.+.+ .++++. ++++...   ...+.    ..++.+. +++++++      .+|+||-.
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~-~G~~V~-~~~r~~~---~~~~~----~~g~~~~-~~~~~~~------~aDvVila   80 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQ-CGYSVV-FGSRNPQ---VSSLL----PRGAEVL-CYSEAAS------RSDVIVLA   80 (201)
Confidence            4579999995 9999999998764 456654 3554311   11121    2345544 6667664      79998876


Q ss_pred             CChHhHHHHHHHH-HHcCCCeEEeCCCCC
Q 025154          114 TDASTVYDNVKQA-TAFGMRSVVYVPHIQ  141 (257)
Q Consensus       114 T~p~~~~~~~~~a-~~~Gi~vViGTTG~s  141 (257)
                      +.+....+.+... ...+.-+|.-++|++
T Consensus        81 v~~~~~~~v~~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           81 VHREHYDFLAELADSLKGRVLIDVSNNQK  109 (201)
Confidence            6655443333111 223555565566774

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=95.95  E-value=0.02  Score=50.65  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~v   67 (257)
                      |++|.|+|++|.+|+.+++.+.+.. +.++++..
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~   37 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   37 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEe
Confidence            6899999999999999999988653 78887654

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=95.95  E-value=0.032  Score=47.91  Aligned_cols=27  Identities=15%  Similarity=0.375  Sum_probs=23.4

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcC
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKAR   59 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~   59 (257)
                      -.|+||.|+|++|.+|+.+++.+.+..
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g   30 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGA   30 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTT
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcC
Confidence            357899999999999999999988653

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.93  E-value=0.013  Score=53.86  Aligned_cols=65  Identities=20%  Similarity=0.179  Sum_probs=45.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .++|+|+| +|+||+.+++.+. .-++++.+ +|+... .....      ..|+..+.++++++.      .+|+|+...
T Consensus       168 g~tvGIIG-~G~IG~~vA~~l~-~~G~~V~~-~d~~~~-~~~~~------~~g~~~~~~l~ell~------~aDvV~l~~  231 (347)
T 1mx3_A          168 GETLGIIG-LGRVGQAVALRAK-AFGFNVLF-YDPYLS-DGVER------ALGLQRVSTLQDLLF------HSDCVTLHC  231 (347)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEEE-ECTTSC-TTHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-ECHHHHHHHHHHH-HCCCEEEE-ECCCcc-hhhHh------hcCCeecCCHHHHHh------cCCEEEEcC
Confidence            46899999 5999999999876 46888764 665321 11111      234545568999986      699988765


Q ss_pred             C
Q 025154          115 D  115 (257)
Q Consensus       115 ~  115 (257)
                      .
T Consensus       232 P  232 (347)
T 1mx3_A          232 G  232 (347)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.91  E-value=0.022  Score=49.72  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=26.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||.|+|+ |.+|+.+++.+.. .++.-+.++|.
T Consensus        29 ~~VlvvG~-GglG~~va~~La~-~Gvg~i~lvD~   60 (251)
T 1zud_1           29 SQVLIIGL-GGLGTPAALYLAG-AGVGTLVLADD   60 (251)
T ss_dssp             CEEEEECC-STTHHHHHHHHHH-TTCSEEEEECC
T ss_pred             CcEEEEcc-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            58999996 9999999998874 57766667774

>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*

Probab=95.88  E-value=0.027  Score=52.58  Aligned_cols=139  Identities=13%  Similarity=0.177  Sum_probs=89.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHh--cC------------------CcEEEEEEe--cCCCCcchhhhhcC----CCC--
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTK--AR------------------GMEVAGAID--SHSVGEDIGMVCDM----EQP--   85 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~--~~------------------~~eLvg~vd--~~~~g~d~g~~~g~----~~~--   85 (257)
                      -|+||.|+| -|...+.+++-+..  +.                  ++++|+++|  .++.|+|+.+..-.    ..+  
T Consensus        12 ~~~~~~~~G-vGn~ASslvqGie~yk~~~~~~~Gl~~~~~~~y~~~DievvaafDVd~~KVGkdl~eai~~~pn~Vp~~l   90 (394)
T 1vjp_A           12 HMVKVLILG-QGYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLT   90 (394)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCS
T ss_pred             heeeeEEEE-ehHHHHHHHHHHHHHHcCCCCCccccchhccCCCcCceEEEEEEeccccccCCcHHHHHhhCcCCCCccc
Confidence            389999999 59999999986642  11                  279999999  45778887653311    001  


Q ss_pred             CCeeee-----c----------------CHHHHHhcc---ccCCCccEEEEcC------C---hH---------------
Q 025154           86 LEIPVM-----S----------------DLTMVLGSI---SQSKARAVVIDFT------D---AS---------------  117 (257)
Q Consensus        86 ~gv~v~-----~----------------dl~~~l~~~---~~~~~~DVvIDFT------~---p~---------------  117 (257)
                      .+|.|.     +                ++++..+++   .++.++||||...      .   .+               
T Consensus        91 ~~V~V~~G~~ldg~~~~~~~~~~~~e~~s~~e~v~~vv~~lk~~~~DVvIn~~STE~~~p~gs~~~l~~ai~~~~~~~i~  170 (394)
T 1vjp_A           91 SDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLT  170 (394)
T ss_dssp             SCCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCC
T ss_pred             CCCEEEeccccCcccccchhhhccccccchhhHHHHHHHHHHHcCCCEEEEecCccCCCCCCCHHHHHHHHhcCCCCccC
Confidence            233220     0                112222111   1235799999985      1   12               


Q ss_pred             hHHHHHHHHHH-----cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154          118 TVYDNVKQATA-----FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       118 ~~~~~~~~a~~-----~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~  175 (257)
                      ++.-++.+|++     .|++.|-||+.|... ...+.++++++|+|++ .--|-.|..++...
T Consensus       171 aS~~YA~AAl~~~~~~aG~~fVN~~P~~ia~-~P~~~ela~~~gvpi~-GDD~ktGqT~lks~  231 (394)
T 1vjp_A          171 ATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVF-GDDGATGATPFTAD  231 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEE-CSSBSCSHHHHHHH
T ss_pred             hHHHHHHHHHhhccccCCcceEecCCccccC-CHHHHHHHHHcCCCEE-ccccCCCCCchHHH
Confidence            45557788899     999999999976531 2458888888888855 55589999875444

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.87  E-value=0.017  Score=49.92  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=26.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |+||.|+|+ |.+|+.+++.+.+ .+.++++...
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~-~g~~V~~~~r   34 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTA-QGHEVTGLRR   34 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-CCCEEEEEeC
Confidence            579999995 9999999998875 4788887654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.86  E-value=0.032  Score=49.93  Aligned_cols=104  Identities=14%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC-------CCCCCeeeecCHHHHHhccccC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM-------EQPLEIPVMSDLTMVLGSISQS  104 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--g~-------~~~~gv~v~~dl~~~l~~~~~~  104 (257)
                      .++||+|+|+ |.||..++..+.+ .+.++....+.    ..+..+.  |.       ..+..+.++++++++       
T Consensus        18 ~~~kI~IiGa-Ga~G~~~a~~L~~-~G~~V~l~~~~----~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-------   84 (318)
T 3hwr_A           18 QGMKVAIMGA-GAVGCYYGGMLAR-AGHEVILIARP----QHVQAIEATGLRLETQSFDEQVKVSASSDPSAV-------   84 (318)
T ss_dssp             --CEEEEESC-SHHHHHHHHHHHH-TTCEEEEECCH----HHHHHHHHHCEEEECSSCEEEECCEEESCGGGG-------
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHH-CCCeEEEEEcH----hHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHc-------
Confidence            4789999996 9999999998874 56777655221    1111111  00       001133446677553       


Q ss_pred             CCccEEEEcCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHh
Q 025154          105 KARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFC  152 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a  152 (257)
                      .++|+||-++.+....+.+....   ..+..+|+-+.|+..++  .|.+..
T Consensus        85 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--~l~~~~  133 (318)
T 3hwr_A           85 QGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENAD--TLRSLL  133 (318)
T ss_dssp             TTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH--HHHHHC
T ss_pred             CCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH--HHHHHc
Confidence            27999997777666655555433   34566777788998743  455443

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.85  E-value=0.032  Score=49.40  Aligned_cols=33  Identities=30%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .|++|.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~   52 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLE-RGDKVVGID   52 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHH-CCCEEEEEE
Confidence            367999999999999999998875 478888764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.84  E-value=0.041  Score=49.78  Aligned_cols=34  Identities=24%  Similarity=0.169  Sum_probs=28.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .|+||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   61 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKH-EGHYVIASDW   61 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             cCCeEEEECCccHHHHHHHHHHHH-CCCeEEEEEC
Confidence            468999999999999999998875 4788887543

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=95.84  E-value=0.0099  Score=51.46  Aligned_cols=82  Identities=13%  Similarity=0.136  Sum_probs=51.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||.|+|++|.+|+.+++.+.  .+.++++. ++...      ..    ..++.-.++++++++.    .++|+||.+..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~--~g~~V~~~-~r~~~------~~----~~D~~d~~~~~~~~~~----~~~d~vih~a~   63 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA--PVGNLIAL-DVHSK------EF----CGDFSNPKGVAETVRK----LRPDVIVNAAA   63 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT--TTSEEEEE-CTTCS------SS----CCCTTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh--cCCeEEEe-ccccc------cc----cccCCCHHHHHHHHHh----cCCCEEEECcc
Confidence            589999999999999999887  48888864 33210      00    1111112344556641    24999999752


Q ss_pred             h------------------HhHHHHHHHHHHcCCCeE
Q 025154          116 A------------------STVYDNVKQATAFGMRSV  134 (257)
Q Consensus       116 p------------------~~~~~~~~~a~~~Gi~vV  134 (257)
                      +                  ......++.|.+.|+.+|
T Consensus        64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  100 (299)
T 1n2s_A           64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVV  100 (299)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEE
T ss_pred             cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence            1                  113456677777787766

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.82  E-value=0.04  Score=50.49  Aligned_cols=60  Identities=17%  Similarity=0.166  Sum_probs=43.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .++|+|+| +|+||+.+++.+. .-++++. ++|+... .          ..+...+.++++++.      .+|+|+-..
T Consensus       171 gktiGIIG-lG~IG~~vA~~l~-~~G~~V~-~~dr~~~-~----------~~~~~~~~sl~ell~------~aDvVil~v  230 (340)
T 4dgs_A          171 GKRIGVLG-LGQIGRALASRAE-AFGMSVR-YWNRSTL-S----------GVDWIAHQSPVDLAR------DSDVLAVCV  230 (340)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSCC-T----------TSCCEECSSHHHHHH------TCSEEEECC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEcCCcc-c----------ccCceecCCHHHHHh------cCCEEEEeC
Confidence            46999999 5999999999876 5678876 4665311 0          123344678999996      799988554

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.82  E-value=0.032  Score=50.87  Aligned_cols=62  Identities=11%  Similarity=0.074  Sum_probs=44.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .++|+|+| +|+||+.+++.+. .-++++. ++|+...  .         ..++..+.++++++.      .+|+|+-..
T Consensus       164 g~~vgIIG-~G~iG~~vA~~l~-~~G~~V~-~~dr~~~--~---------~~g~~~~~~l~ell~------~aDvVil~v  223 (333)
T 3ba1_A          164 GKRVGIIG-LGRIGLAVAERAE-AFDCPIS-YFSRSKK--P---------NTNYTYYGSVVELAS------NSDILVVAC  223 (333)
T ss_dssp             TCCEEEEC-CSHHHHHHHHHHH-TTTCCEE-EECSSCC--T---------TCCSEEESCHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EECCCch--h---------ccCceecCCHHHHHh------cCCEEEEec
Confidence            46899999 5999999999876 4678865 4665311  0         113445678999885      799998766


Q ss_pred             Ch
Q 025154          115 DA  116 (257)
Q Consensus       115 ~p  116 (257)
                      .+
T Consensus       224 P~  225 (333)
T 3ba1_A          224 PL  225 (333)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.78  E-value=0.018  Score=50.59  Aligned_cols=70  Identities=19%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .+||+|+|+ |.||+.+++.+.+. +++ +.++++..  ..+.++.   ...++.+++++++++.      ++|+||..|
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~-g~~-V~v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~aDiVi~at  194 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKE-GAK-VFLWNRTK--EKAIKLA---QKFPLEVVNSPEEVID------KVQVIVNTT  194 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHH-TCE-EEEECSSH--HHHHHHT---TTSCEEECSCGGGTGG------GCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHc-CCE-EEEEECCH--HHHHHHH---HHcCCeeehhHHhhhc------CCCEEEEeC
Confidence            368999995 99999999988765 554 44666531  1223333   2446666668877774      699999887


Q ss_pred             ChHh
Q 025154          115 DAST  118 (257)
Q Consensus       115 ~p~~  118 (257)
                      .+..
T Consensus       195 p~~~  198 (275)
T 2hk9_A          195 SVGL  198 (275)
T ss_dssp             STTS
T ss_pred             CCCC
Confidence            6543

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.78  E-value=0.023  Score=49.57  Aligned_cols=87  Identities=15%  Similarity=0.169  Sum_probs=49.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ++||.|+|++|.+|+.+++.+.+ .+.++++...+...+   + +.    ..++.-.++++++++.    ..+|+||.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~---~-~~----~~Dl~d~~~~~~~~~~----~~~d~vih~A   68 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQ-NNWHAVGCGFRRARP---K-FE----QVNLLDSNAVHHIIHD----FQPHVIVHCA   68 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEC--------------------------CHHHHHH----HCCSEEEECC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHh-CCCeEEEEccCCCCC---C-eE----EecCCCHHHHHHHHHh----hCCCEEEECC
Confidence            36899999999999999998875 578887654221100   0 10    1122223455566642    2589999875


Q ss_pred             Ch------------------HhHHHHHHHHHHcCCCeE
Q 025154          115 DA------------------STVYDNVKQATAFGMRSV  134 (257)
Q Consensus       115 ~p------------------~~~~~~~~~a~~~Gi~vV  134 (257)
                      ..                  ..+...++.|.+.|..+|
T Consensus        69 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  106 (315)
T 2ydy_A           69 AERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLI  106 (315)
T ss_dssp             -------------------CHHHHHHHHHHHHHTCEEE
T ss_pred             cccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            32                  123456777777787766

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.68  E-value=0.045  Score=47.92  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=26.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |+||.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~   32 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVD-EGLSVVVVD   32 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEe
Confidence            68999999999999999998875 478887754

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.66  E-value=0.046  Score=48.07  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +++|.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   36 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLA-HGYDVVIAD   36 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHH-CCCcEEEEe
Confidence            57999999999999999998875 478877653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.65  E-value=0.043  Score=47.09  Aligned_cols=33  Identities=15%  Similarity=0.143  Sum_probs=27.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      +||||.|+|| |.+|+.+++.+.+. +.++++...
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r   36 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQ-GWRIIGTSR   36 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGG-TCEEEEEES
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHC-CCEEEEEEc
Confidence            4689999998 99999999988754 788887654

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.64  E-value=0.041  Score=49.03  Aligned_cols=98  Identities=10%  Similarity=0.050  Sum_probs=51.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      ++|.|+|++|.+|+.+++.+.+....++++. ++.........+.+..-...+.-.++++++++. ..-.++|+||.+..
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~d~Vih~A~  124 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDKGITDILVV-DNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAG-EEFGDVEAIFHEGA  124 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCCEEEE-ECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTT-CCCSSCCEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCcEEEEE-ecCCCcchhhcccCceEeeecCcHHHHHHHHhh-cccCCCCEEEECCc
Confidence            6899999999999999999886532777765 432111111111111000001111233444430 00015999998752


Q ss_pred             h--------H--------hHHHHHHHHHHcCCCeEE
Q 025154          116 A--------S--------TVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       116 p--------~--------~~~~~~~~a~~~Gi~vVi  135 (257)
                      +        +        .+...++.|.+.|+.+|.
T Consensus       125 ~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~  160 (357)
T 2x6t_A          125 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLY  160 (357)
T ss_dssp             CCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEE
T ss_pred             ccCCccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            1        1        234566777777876663

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.61  E-value=0.065  Score=46.48  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=26.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |||.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   31 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVD   31 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHh-CCCEEEEEe
Confidence            5899999999999999999875 578877653

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=95.58  E-value=0.031  Score=49.12  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=27.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |+||.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~   32 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALS-QGIDLIVFD   32 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHh-CCCEEEEEe
Confidence            67999999999999999998875 578887654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.56  E-value=0.042  Score=48.90  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=59.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-----CCC---CeeeecCHHHHHhccccCCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-----QPL---EIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~-----~~~---gv~v~~dl~~~l~~~~~~~~  106 (257)
                      +|||+|+|+ |.||..++..+.+ .+.++. ++++... +.+.+ .|..     ...   .+.+++++++ +      ..
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~-~g~~V~-~~~r~~~-~~i~~-~g~~~~~~~g~~~~~~~~~~~~~~~-~------~~   69 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQR-SGEDVH-FLLRRDY-EAIAG-NGLKVFSINGDFTLPHVKGYRAPEE-I------GP   69 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHH-TSCCEE-EECSTTH-HHHHH-TCEEEEETTCCEEESCCCEESCHHH-H------CC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEEcCcH-HHHHh-CCCEEEcCCCeEEEeeceeecCHHH-c------CC
Confidence            479999996 9999999988875 456655 3444321 11110 0100     000   2344677765 3      37


Q ss_pred             ccEEEEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHh
Q 025154          107 RAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFC  152 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~e~~~~L~~~a  152 (257)
                      +|+||-++.+....+.+...   +..+..+|+-.-|+..+  +.|.+..
T Consensus        70 ~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~--~~l~~~~  116 (312)
T 3hn2_A           70 MDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNE--EALATLF  116 (312)
T ss_dssp             CSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHH--HHHHHHT
T ss_pred             CCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcH--HHHHHHC
Confidence            99999787666555444443   34456677777799753  2455543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.56  E-value=0.019  Score=52.49  Aligned_cols=68  Identities=13%  Similarity=0.041  Sum_probs=45.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| .|+||+.+++.+...-++++. ++|+...  ......    ..++...+++++++.      .+|+|+...
T Consensus       163 g~~vgIIG-~G~IG~~vA~~l~~~~G~~V~-~~d~~~~--~~~~~~----~~g~~~~~~l~ell~------~aDvVil~v  228 (348)
T 2w2k_A          163 GHVLGAVG-LGAIQKEIARKAVHGLGMKLV-YYDVAPA--DAETEK----ALGAERVDSLEELAR------RSDCVSVSV  228 (348)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCCEEE-EECSSCC--CHHHHH----HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEE-ECHHHHHHHHHHHHhcCCEEE-EECCCCc--chhhHh----hcCcEEeCCHHHHhc------cCCEEEEeC
Confidence            46899999 599999999987625678876 4665321  111111    224445568888885      699999776


Q ss_pred             Ch
Q 025154          115 DA  116 (257)
Q Consensus       115 ~p  116 (257)
                      .+
T Consensus       229 p~  230 (348)
T 2w2k_A          229 PY  230 (348)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.53  E-value=0.033  Score=53.16  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=29.2

Q ss_pred             CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +.|+..+.||+|+|+ |.||..++..++ ..+++++. +|.
T Consensus        48 ~~~~~~i~kVaVIGa-G~MG~~IA~~la-~aG~~V~l-~D~   85 (460)
T 3k6j_A           48 NSEAYDVNSVAIIGG-GTMGKAMAICFG-LAGIETFL-VVR   85 (460)
T ss_dssp             SCCCCCCCEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECS
T ss_pred             cCCcccCCEEEEECC-CHHHHHHHHHHH-HCCCeEEE-EEC
Confidence            444555789999995 999999998877 45888764 564

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.50  E-value=0.14  Score=42.71  Aligned_cols=32  Identities=31%  Similarity=0.363  Sum_probs=26.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~v   67 (257)
                      +++|.|+|++|.+|+.+++.+.+. +.  ++++..
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~   51 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIG   51 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEE
Confidence            358999999999999999998865 55  777654

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.49  E-value=0.068  Score=47.46  Aligned_cols=32  Identities=22%  Similarity=0.193  Sum_probs=27.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |++|.|+|++|.+|+.+++.+.+. +.++++..
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~   58 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKL-DQKVVGLD   58 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEe
Confidence            579999999999999999988754 78887654

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.47  E-value=0.14  Score=45.74  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=29.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (257)
                      .+++|.|+|++|.+|+.+++.+.+. .+.++++...
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            3579999999999999999998864 6899887653

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.43  E-value=0.063  Score=47.40  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=28.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ..|+|.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~-~g~~V~~~~r   52 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDN   52 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGG-GTCEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            347999999999999999998875 4788876543

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.43  E-value=0.028  Score=55.47  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeee--e
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPV--M   91 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----~~g~~~~~gv~v--~   91 (257)
                      ..||+|+|+ |..|..+++.++. .|+.=+.++|...                .|+.-.+     +..+  ..++.+  +
T Consensus       326 ~arVLIVGa-GGLGs~vA~~La~-aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~i--NP~V~v~~~  401 (615)
T 4gsl_A          326 NTKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI--FPLMDATGV  401 (615)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHH--CTTCEEEEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhh--CCCcEEEEe
Confidence            358999996 9999999998875 5776667788421                1111000     1111  012221  1


Q ss_pred             c---------------------CHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154           92 S---------------------DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHI  140 (257)
Q Consensus        92 ~---------------------dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTTG~  140 (257)
                      .                     ++++++.      ++|+|||.|. +++-...-..|.++++|+|.+..||
T Consensus       402 ~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~------~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aalG~  466 (615)
T 4gsl_A          402 KLSIPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGF  466 (615)
T ss_dssp             CCCCCCTTCCCSCHHHHHHHHHHHHHHHH------HCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEEECS
T ss_pred             eccccccCccccchhhhcCCHHHHHHHhh------cCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEEccc
Confidence            1                     2334453      6899999884 5555667788889999988765454

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.42  E-value=0.081  Score=50.11  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=26.7

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..++||+|+|+ |.||..++..++ ..+++++ ++|.
T Consensus        35 ~~~~kV~VIGa-G~MG~~iA~~la-~~G~~V~-l~D~   68 (463)
T 1zcj_A           35 QPVSSVGVLGL-GTMGRGIAISFA-RVGISVV-AVES   68 (463)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHH-TTTCEEE-EECS
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEEC
Confidence            34679999996 999999998876 4678865 4564

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=95.42  E-value=0.023  Score=51.07  Aligned_cols=100  Identities=10%  Similarity=0.105  Sum_probs=61.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||.|+||+|.+|+.+++.+.+....+++. +|..   .+               .++++++++      ++|+||.+..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~-~d~~---~d---------------~~~l~~~~~------~~d~Vih~a~   55 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFE-VHRQ---TK---------------EEELESALL------KADFIVHLAG   55 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEE-CCTT---CC---------------HHHHHHHHH------HCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEE-ECCC---CC---------------HHHHHHHhc------cCCEEEECCc
Confidence            689999999999999999998765446664 3321   11               123455664      6899998642


Q ss_pred             --------------hHhHHHHHHHHHHcCCC--eE-EeCCC---CC-----HHHH-HHHHHHhhhcCceEE
Q 025154          116 --------------ASTVYDNVKQATAFGMR--SV-VYVPH---IQ-----LETV-SALSAFCDKASMGCL  160 (257)
Q Consensus       116 --------------p~~~~~~~~~a~~~Gi~--vV-iGTTG---~s-----~e~~-~~L~~~a~~~gipvl  160 (257)
                                    ...+...++.|.+.|+.  +| +.|.+   .+     .-.. +.+++++++.|+++.
T Consensus        56 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~  126 (369)
T 3st7_A           56 VNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESKLQGEQLLREYAEEYGNTVY  126 (369)
T ss_dssp             SBCTTCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGSCSHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcCCCCchHHHHHHHHHHHHHHHHhCCCEE
Confidence                          22345677888888855  55 33321   11     1112 235666666666654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.38  E-value=0.021  Score=52.41  Aligned_cols=92  Identities=14%  Similarity=0.088  Sum_probs=58.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ..+|+|+|+ |.||+.+++.+....+.+-+.++++..  ..+..+... ....+  +.+++++++++.      ++|+||
T Consensus       129 ~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~--~~a~~la~~~~~~~g~~~~~~~~~~eav~------~aDiVi  199 (350)
T 1x7d_A          129 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDP--LATAKLIANLKEYSGLTIRRASSVAEAVK------GVDIIT  199 (350)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHTTCTTCEEEECSSHHHHHT------TCSEEE
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHHHHhccCceEEEeCCHHHHHh------cCCEEE
Confidence            468999995 999999998876666677788888641  112222210 00114  456789999885      799999


Q ss_pred             EcCChHhHHHHH-HHHHHcCCCeEE
Q 025154          112 DFTDASTVYDNV-KQATAFGMRSVV  135 (257)
Q Consensus       112 DFT~p~~~~~~~-~~a~~~Gi~vVi  135 (257)
                      -.|......+.+ ..+++.|.+++.
T Consensus       200 ~aTps~~~~pvl~~~~l~~G~~V~~  224 (350)
T 1x7d_A          200 TVTADKAYATIITPDMLEPGMHLNA  224 (350)
T ss_dssp             ECCCCSSEEEEECGGGCCTTCEEEE
T ss_pred             EeccCCCCCceecHHHcCCCCEEEE
Confidence            877543211111 235678888874

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.34  E-value=0.048  Score=51.88  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=28.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ||||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~-~G~~V~~l~R  179 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQT-GGHEVIQLVR  179 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            78999999999999999998875 4788887654

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.34  E-value=0.14  Score=44.95  Aligned_cols=33  Identities=12%  Similarity=0.188  Sum_probs=28.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ++||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~-~G~~V~~~~r   41 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQ-KGYAVNTTVR   41 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEc
Confidence            57899999999999999998875 5888887654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.34  E-value=0.0051  Score=53.60  Aligned_cols=107  Identities=11%  Similarity=0.078  Sum_probs=60.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      ||+|+|+ |+||+.+++.+.+. +++ +.++++..  ..+.++..   ..+.. +++++++ .      ++|+||-.|.+
T Consensus       118 ~v~iiG~-G~~g~~~a~~l~~~-g~~-v~v~~r~~--~~~~~l~~---~~~~~-~~~~~~~-~------~~Divi~~tp~  181 (263)
T 2d5c_A          118 PALVLGA-GGAGRAVAFALREA-GLE-VWVWNRTP--QRALALAE---EFGLR-AVPLEKA-R------EARLLVNATRV  181 (263)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHT-TCC-EEEECSSH--HHHHHHHH---HHTCE-ECCGGGG-G------GCSEEEECSST
T ss_pred             eEEEECC-cHHHHHHHHHHHHC-CCE-EEEEECCH--HHHHHHHH---Hhccc-hhhHhhc-c------CCCEEEEccCC
Confidence            8999995 99999999988754 555 45666531  11222221   12333 4577666 5      69999988865


Q ss_pred             HhHH---HHH-HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          117 STVY---DNV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       117 ~~~~---~~~-~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                      ..+.   ..+ ..+++.|..++ -.. +++.+. ++.+.+++.|+.++  ++
T Consensus       182 ~~~~~~~~~l~~~~l~~g~~vi-D~~-~~p~~t-~l~~~a~~~g~~~v--~g  228 (263)
T 2d5c_A          182 GLEDPSASPLPAELFPEEGAAV-DLV-YRPLWT-RFLREAKAKGLKVQ--TG  228 (263)
T ss_dssp             TTTCTTCCSSCGGGSCSSSEEE-ESC-CSSSSC-HHHHHHHHTTCEEE--CS
T ss_pred             CCCCCCCCCCCHHHcCCCCEEE-Eee-cCCccc-HHHHHHHHCcCEEE--Cc
Confidence            5321   111 23345565443 322 222222 36666777777554  55

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.33  E-value=0.2  Score=45.17  Aligned_cols=71  Identities=15%  Similarity=0.142  Sum_probs=43.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCeeeecCHHHHHhccccCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~g~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      .++||+|+|+ |.||..++..++.. ++ + +..+|....   |  .+....+. ......+..+.|+ +.+.      +
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~-g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~------~   72 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQK-NLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLA------G   72 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHT-TCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGT------T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhC------C
Confidence            3579999997 99999999887754 55 7 777885321   0  11111100 0012235556788 5563      7


Q ss_pred             ccEEEEcC
Q 025154          107 RAVVIDFT  114 (257)
Q Consensus       107 ~DVvIDFT  114 (257)
                      +|+||...
T Consensus        73 aD~Vi~a~   80 (322)
T 1t2d_A           73 ADVVIVTA   80 (322)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEeC
Confidence            99988653

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=95.33  E-value=0.11  Score=49.69  Aligned_cols=136  Identities=13%  Similarity=0.137  Sum_probs=81.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCc---chhhhhc-----------CCCCC-CeeeecCH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE---DIGMVCD-----------MEQPL-EIPVMSDL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~---d~g~~~g-----------~~~~~-gv~v~~dl   94 (257)
                      ..||+|.| .|.+|+..++.+. +.+.++|++.|+.     ..|-   ++..+..           ....+ +....+ .
T Consensus       252 g~~vaVqG-~GnVG~~~a~~L~-~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~-~  328 (470)
T 2bma_A          252 KQTAVVSG-SGNVALYCVQKLL-HLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFP-N  328 (470)
T ss_dssp             GCEEEEEC-SSHHHHHHHHHHH-HTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECS-S
T ss_pred             CCEEEEEC-CcHHHHHHHHHHH-HCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEec-C
Confidence            36899999 5999999999876 4699999999942     3354   3322211           00000 222222 1


Q ss_pred             HHHHhccccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH---H
Q 025154           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---G  168 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl---G  168 (257)
                      ++++.     .++||+|-+..+... .+++...++++..+|++--  .+++|..+.|    +++|  |++.|-+..   |
T Consensus       329 ~~~~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~~L----~~rG--Il~~PD~~aNAGG  397 (470)
T 2bma_A          329 EKPWG-----VPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLF----KSNN--IIYCPSKAANAGG  397 (470)
T ss_dssp             CCTTS-----SCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHHHHHH----HHTT--CEEECHHHHTTHH
T ss_pred             cCeee-----cCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHHHHHH----HHCC--cEEEChHHhhCCC
Confidence            34554     489999998765444 6788888889999999865  3455543333    3334  555554442   6


Q ss_pred             HHH--HHHHHHHhcCCCCC
Q 025154          169 SIL--LQQAAISASFHYKN  185 (257)
Q Consensus       169 vnl--l~~~a~~l~~~~~D  185 (257)
                      |..  ++ ..+.+....|+
T Consensus       398 V~~S~~E-~~qn~~~~~w~  415 (470)
T 2bma_A          398 VAISGLE-MSQNFQFSHWT  415 (470)
T ss_dssp             HHHHHHH-HHHHHTTCCCC
T ss_pred             ceeeHHH-hhccccccCCC
Confidence            654  33 33344444554

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=95.32  E-value=0.12  Score=47.44  Aligned_cols=91  Identities=21%  Similarity=0.266  Sum_probs=44.7

Q ss_pred             eccccccccccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCc------EEEEEEecCC-----CCc--chh
Q 025154           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSHS-----VGE--DIG   77 (257)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~------eLvg~vd~~~-----~g~--d~g   77 (257)
                      |.||---+++++.+    .+...+++||+|+||+|.+|+.++-+++..+=+      +| ..+|.+.     .|.  |+.
T Consensus         4 ~~~~~~~~~~~~~~----~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL-~L~Di~~~~~~~~Gva~DL~   78 (345)
T 4h7p_A            4 HHHHHMGTLEAQTQ----GPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVEL-RLLDIEPALKALAGVEAELE   78 (345)
T ss_dssp             ----------------------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEE-EEECCGGGHHHHHHHHHHHH
T ss_pred             cccccccccccccc----CCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEE-EEECCCCccccchhhhhhhh
Confidence            34444456666632    222345689999999999999999877654422      34 4677421     111  111


Q ss_pred             hhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           78 MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        78 ~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ... ......+.++++..+.+.      ++||||--
T Consensus        79 ~~~-~~~~~~~~~~~~~~~a~~------~advVvi~  107 (345)
T 4h7p_A           79 DCA-FPLLDKVVVTADPRVAFD------GVAIAIMC  107 (345)
T ss_dssp             HTT-CTTEEEEEEESCHHHHTT------TCSEEEEC
T ss_pred             hcC-ccCCCcEEEcCChHHHhC------CCCEEEEC
Confidence            111 101123556788888884      89988854

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=95.28  E-value=0.07  Score=50.69  Aligned_cols=136  Identities=14%  Similarity=0.070  Sum_probs=77.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC----e--eeecCHHHHHhcccc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE----I--PVMSDLTMVLGSISQ  103 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~g----v--~v~~dl~~~l~~~~~  103 (257)
                      ..||+|.| .|.+|+..++.+.+ .+.+++++.|+.     ..|-|..++.......+    .  ..+-+.++++.    
T Consensus       235 g~~vaVqG-fGnVG~~~a~~L~e-~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~----  308 (440)
T 3aog_A          235 GARVAIQG-FGNVGNAAARAFHD-HGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWG----  308 (440)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTT----
T ss_pred             CCEEEEec-cCHHHHHHHHHHHH-CCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhc----
Confidence            36899999 59999999998764 689999999953     23445443321100011    0  01224567775    


Q ss_pred             CCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEE--EccCchHHHHH-HHHHHH
Q 025154          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCL--IAPTLSIGSIL-LQQAAI  177 (257)
Q Consensus       104 ~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl--~spNfSlGvnl-l~~~a~  177 (257)
                       .++||+|.++.+... .+++.   +.+..+|++--  .++++..+.|    +++|+.++  +..|-. ||.+ -.+..+
T Consensus       309 -~~~DIlvPcA~~n~i~~~na~---~l~ak~VvEgAN~p~t~eA~~iL----~~~GI~~~PD~~aNaG-GV~vS~~E~~q  379 (440)
T 3aog_A          309 -LPVEFLVPAALEKQITEQNAW---RIRARIVAEGANGPTTPAADDIL----LEKGVLVVPDVIANAG-GVTVSYFEWVQ  379 (440)
T ss_dssp             -CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHH----HHHTCEEECHHHHTTH-HHHHHHHHHHH
T ss_pred             -CCCcEEEecCCcCccchhhHH---HcCCcEEEecCccccCHHHHHHH----HHCCCEEEChHHHhCC-CceEEEEEEEe
Confidence             489999998764433 23332   44888888765  3455443333    23344443  333433 6654 122333


Q ss_pred             HhcCCCCC
Q 025154          178 SASFHYKN  185 (257)
Q Consensus       178 ~l~~~~~D  185 (257)
                      -+....|+
T Consensus       380 N~~~~~w~  387 (440)
T 3aog_A          380 DFNSYFWT  387 (440)
T ss_dssp             HTTTCCCC
T ss_pred             cCccCcCC
Confidence            44444554

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.24  E-value=0.067  Score=48.36  Aligned_cols=97  Identities=15%  Similarity=0.069  Sum_probs=55.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeee---ecCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DVv  110 (257)
                      +|||+|+||+|.+|..++..+....- .+|+. +|....-..+.++.....+..+..   ++|+++++.      ++|+|
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l-~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~------gaDvV   80 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHL-YDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALT------GMDLI   80 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEE-EESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHT------TCSEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcC------CCCEE
Confidence            58999999889999999988775421 45554 774321001112221100112222   336777774      79998


Q ss_pred             EEcC-C---h------------HhHHHHHHHHHHcCCC-eEEeCC
Q 025154          111 IDFT-D---A------------STVYDNVKQATAFGMR-SVVYVP  138 (257)
Q Consensus       111 IDFT-~---p------------~~~~~~~~~a~~~Gi~-vViGTT  138 (257)
                      |-.. .   |            +.+.+.++.+.+++.+ +|+=.|
T Consensus        81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S  125 (326)
T 1smk_A           81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS  125 (326)
T ss_dssp             EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            8653 1   2            3445666777777643 444344

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.20  E-value=0.032  Score=50.02  Aligned_cols=71  Identities=10%  Similarity=-0.004  Sum_probs=42.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc--hhhhhcC----CCCCCeeeecCHHHHHhccccCCCcc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--IGMVCDM----EQPLEIPVMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d--~g~~~g~----~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (257)
                      ++||+|+|+ |.||..++..+....-++ +..+|....-.+  +.++...    .....+..++|+ +.+.      ++|
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~------~aD   72 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTA------NSD   72 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGT------TCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHC------CCC
Confidence            479999997 999999998887654347 777885321000  1111110    012234445787 4553      799


Q ss_pred             EEEEcC
Q 025154          109 VVIDFT  114 (257)
Q Consensus       109 VvIDFT  114 (257)
                      +||...
T Consensus        73 ~Vi~a~   78 (309)
T 1ur5_A           73 VIVVTS   78 (309)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            988653

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=95.14  E-value=0.075  Score=45.85  Aligned_cols=92  Identities=12%  Similarity=0.108  Sum_probs=51.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCC----CccEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK----ARAVVI  111 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~----~~DVvI  111 (257)
                      ||.|+|++|.+|+.+++.+.+. + .++++. ++.........+.+..-...+.-.++++++++     .    ++|+||
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~-g~~~V~~~-~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~d~vi   73 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDK-GITDILVV-DNLKDGTKFVNLVDLNIADYMDKEDFLIQIMA-----GEEFGDVEAIF   73 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCCEEEE-ECCSSGGGGHHHHTSCCSEEEEHHHHHHHHHT-----TCCCSSCCEEE
T ss_pred             CEEEEcCccHHHHHHHHHHHHC-CCcEEEEE-ccCCCCchhhhcCcceeccccccHHHHHHHHh-----ccccCCCcEEE
Confidence            5899999999999999998865 5 777765 43211111111211100001111123344443     2    499999


Q ss_pred             EcCC--------hH--------hHHHHHHHHHHcCCCeEE
Q 025154          112 DFTD--------AS--------TVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       112 DFT~--------p~--------~~~~~~~~a~~~Gi~vVi  135 (257)
                      .+..        ++        .....++.|.+.|+.+|.
T Consensus        74 ~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~  113 (310)
T 1eq2_A           74 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLY  113 (310)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEE
T ss_pred             ECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            8752        11        234567777788877663

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.14  E-value=0.02  Score=52.05  Aligned_cols=65  Identities=22%  Similarity=0.202  Sum_probs=43.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .++|+|+| .|+||+.+++.+. .-++++. ++|+... .+..  .    ..|+.. .++++++.      .+|+|+...
T Consensus       146 g~~vgIIG-~G~iG~~vA~~l~-~~G~~V~-~~d~~~~-~~~~--~----~~g~~~-~~l~e~l~------~aDiVil~v  208 (333)
T 2d0i_A          146 GKKVGILG-MGAIGKAIARRLI-PFGVKLY-YWSRHRK-VNVE--K----ELKARY-MDIDELLE------KSDIVILAL  208 (333)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHG-GGTCEEE-EECSSCC-HHHH--H----HHTEEE-CCHHHHHH------HCSEEEECC
T ss_pred             cCEEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCcc-hhhh--h----hcCcee-cCHHHHHh------hCCEEEEcC
Confidence            46899999 5999999999876 4578875 4665321 1111  1    234443 48888885      699999776


Q ss_pred             Ch
Q 025154          115 DA  116 (257)
Q Consensus       115 ~p  116 (257)
                      .+
T Consensus       209 p~  210 (333)
T 2d0i_A          209 PL  210 (333)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.13  E-value=0.015  Score=53.90  Aligned_cols=109  Identities=7%  Similarity=0.116  Sum_probs=63.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      .+|+|+|+ |+||+.+++.+. ..+++++ +.|+..  ..+.+++.   .++... -+.++++.     .++||+|-...
T Consensus       174 ktV~V~G~-G~VG~~~A~~L~-~~GakVv-v~D~~~--~~l~~~a~---~~ga~~-v~~~~ll~-----~~~DIvip~a~  239 (364)
T 1leh_A          174 LAVSVQGL-GNVAKALCKKLN-TEGAKLV-VTDVNK--AAVSAAVA---EEGADA-VAPNAIYG-----VTCDIFAPCAL  239 (364)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEE-EECSCH--HHHHHHHH---HHCCEE-CCGGGTTT-----CCCSEEEECSC
T ss_pred             CEEEEECc-hHHHHHHHHHHH-HCCCEEE-EEcCCH--HHHHHHHH---HcCCEE-EChHHHhc-----cCCcEeeccch
Confidence            58999995 999999999887 4588988 788531  11222221   123222 24456664     37999887654


Q ss_pred             hHhH-HHHHHHHHHcCCCeEEeCCCC--CHHHHHHHHHHhhhcCceEEEccCch
Q 025154          116 ASTV-YDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       116 p~~~-~~~~~~a~~~Gi~vViGTTG~--s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      .... .+++   ...|..+|++++..  +.++   ..++.++.|  +++.|-+.
T Consensus       240 ~~~I~~~~~---~~lg~~iV~e~An~p~t~~e---a~~~L~~~G--i~~~Pd~~  285 (364)
T 1leh_A          240 GAVLNDFTI---PQLKAKVIAGSADNQLKDPR---HGKYLHELG--IVYAPDYV  285 (364)
T ss_dssp             SCCBSTTHH---HHCCCSEECCSCSCCBSSHH---HHHHHHHHT--CEECCHHH
T ss_pred             HHHhCHHHH---HhCCCcEEEeCCCCCcccHH---HHHHHHhCC--CEEeccee
Confidence            4332 2233   23488899887743  2222   333345544  46666554

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=95.13  E-value=0.11  Score=46.80  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=27.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .|+|.|+|++|.+|+.+++.+.+..+.++++..
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~   34 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEe
Confidence            469999999999999999988724578888654

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=95.12  E-value=0.021  Score=52.89  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=28.0

Q ss_pred             CCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |+..++||+|+|+ ||+||.+.+++.+. ++++|++=|
T Consensus        17 ~~~~~~kVaInGf-GrIGr~vlr~l~e~-~~~ivaInd   52 (356)
T 3hja_A           17 QGPGSMKLAINGF-GRIGRNVFKIAFER-GIDIVAIND   52 (356)
T ss_dssp             -----CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             cCCCCeEEEEECC-CHHHHHHHHHHHHC-CCCEEEEeC
Confidence            3445689999997 99999999988876 899998865

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=95.12  E-value=0.16  Score=44.92  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=27.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |||.|+|++|.+|+.+++.+.+..+.++++..
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~   32 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNID   32 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEe
Confidence            58999999999999999999876578887654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=95.12  E-value=0.081  Score=46.60  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC------cEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~------~eLvg~v   67 (257)
                      +|+|.|+|++|.+|+.+++.+.+...      .++++..
T Consensus        14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~   52 (342)
T 2hrz_A           14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLID   52 (342)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEE
Confidence            57999999999999999999886531      6776543

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=95.07  E-value=0.23  Score=43.48  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=26.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc--CC---cEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA--RG---MEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~---~eLvg~v   67 (257)
                      |||.|+|++|.+|+.+++.+.+.  ++   .++++..
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~   37 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD   37 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEE
Confidence            58999999999999999998864  26   7887654

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.05  E-value=0.13  Score=46.36  Aligned_cols=115  Identities=10%  Similarity=0.137  Sum_probs=63.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e-c---C---HHHHHhccccCCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M-S---D---LTMVLGSISQSKA  106 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~-~---d---l~~~l~~~~~~~~  106 (257)
                      +++|.|+|++|.+|+.+++.+.+ .+.++++...+.. ......+..   ..++.+ . |   |   +.++++      .
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~-~~~~~~l~~---~~~v~~v~~D~l~d~~~l~~~~~------~   73 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLK-GLIAEELQA---IPNVTLFQGPLLNNVPLMDTLFE------G   73 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCSC-SHHHHHHHT---STTEEEEESCCTTCHHHHHHHHT------T
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCCC-hhhHHHHhh---cCCcEEEECCccCCHHHHHHHHh------c
Confidence            46899999999999999998875 5788877553221 111111211   112221 1 2   3   344553      6


Q ss_pred             ccEEEEcCCh------HhHHHHHHHHHHcC-C-CeEE-eCCC--C------C--HHHHHHHHHHhhhcCceEE
Q 025154          107 RAVVIDFTDA------STVYDNVKQATAFG-M-RSVV-YVPH--I------Q--LETVSALSAFCDKASMGCL  160 (257)
Q Consensus       107 ~DVvIDFT~p------~~~~~~~~~a~~~G-i-~vVi-GTTG--~------s--~e~~~~L~~~a~~~gipvl  160 (257)
                      +|+||..+..      ......+..|.+.| + .+|. .+.+  .      +  .......+++.+..|+++.
T Consensus        74 ~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E~~~~~~gi~~~  146 (352)
T 1xgk_A           74 AHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPST  146 (352)
T ss_dssp             CSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTSSSCEE
T ss_pred             CCEEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHHHHHHHcCCCEE
Confidence            8998875532      22345667777888 5 4553 3322  0      0  0223445666666566544

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.03  E-value=0.027  Score=49.02  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=27.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |||.|+|++|-+|+.+++.+.+ .++++++...
T Consensus         1 MkILVTGatGfIG~~L~~~L~~-~G~~V~~l~R   32 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNA-RGHEVTLVSR   32 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            7999999999999999998874 5899887653

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.03  E-value=0.095  Score=46.94  Aligned_cols=66  Identities=21%  Similarity=0.306  Sum_probs=39.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCC--CCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQP--LEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~~--~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .||+|+|+ |.||..+++.++  .+++++ ++|...  ..+...... .+.  .++...+|+++ +.      ++|+||.
T Consensus        13 ~~V~vIG~-G~MG~~iA~~la--aG~~V~-v~d~~~--~~~~~~~~~l~~~~~~~i~~~~~~~~-~~------~aDlVie   79 (293)
T 1zej_A           13 MKVFVIGA-GLMGRGIAIAIA--SKHEVV-LQDVSE--KALEAAREQIPEELLSKIEFTTTLEK-VK------DCDIVME   79 (293)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH--TTSEEE-EECSCH--HHHHHHHHHSCGGGGGGEEEESSCTT-GG------GCSEEEE
T ss_pred             CeEEEEee-CHHHHHHHHHHH--cCCEEE-EEECCH--HHHHHHHHHHHHHHhCCeEEeCCHHH-Hc------CCCEEEE
Confidence            58999995 999999999887  688865 566431  001111000 000  14555667765 43      5788776


Q ss_pred             cC
Q 025154          113 FT  114 (257)
Q Consensus       113 FT  114 (257)
                      ..
T Consensus        80 av   81 (293)
T 1zej_A           80 AV   81 (293)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=95.00  E-value=0.18  Score=44.14  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=27.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~v   67 (257)
                      +|||.|+|++|.+|+.+++.+.+.. +.++++..
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~   36 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINID   36 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence            3689999999999999999988764 58887654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.99  E-value=0.21  Score=47.34  Aligned_cols=129  Identities=11%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             cCCCCC-CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhhhhcC-CCCCCeeeec
Q 025154           28 STNPPQ-SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGMVCDM-EQPLEIPVMS   92 (257)
Q Consensus        28 ~~~~~~-~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------~~g~------d~g~~~g~-~~~~gv~v~~   92 (257)
                      +.-|.. .|-+|+|+| +|-||--++..++ +.+++++| +|..       ..|+      ...+++.. -......+++
T Consensus        13 ~~~p~~~~m~~IaViG-lGYVGLp~A~~~A-~~G~~V~g-~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt   89 (444)
T 3vtf_A           13 GLVPRGSHMASLSVLG-LGYVGVVHAVGFA-LLGHRVVG-YDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAE   89 (444)
T ss_dssp             CCCCTTCCCCEEEEEC-CSHHHHHHHHHHH-HHTCEEEE-ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECS
T ss_pred             CcCCCCCCCCEEEEEc-cCHHHHHHHHHHH-hCCCcEEE-EECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEc
Confidence            344443 367999999 6999998887666 45888876 5632       1111      11111100 0022356678


Q ss_pred             CHHHHHhccccCCCccEEEEcC-Ch------------HhHHHHHHHHHH---cCCCeEEeCC---CCCHHHHHH-HHHHh
Q 025154           93 DLTMVLGSISQSKARAVVIDFT-DA------------STVYDNVKQATA---FGMRSVVYVP---HIQLETVSA-LSAFC  152 (257)
Q Consensus        93 dl~~~l~~~~~~~~~DVvIDFT-~p------------~~~~~~~~~a~~---~Gi~vViGTT---G~s~e~~~~-L~~~a  152 (257)
                      |+++++.      .+|++|-.- +|            ..+.+.+...++   .|.=||+.+|   |.+++-... +++..
T Consensus        90 ~~~~ai~------~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~  163 (444)
T 3vtf_A           90 SAEEAVA------ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA  163 (444)
T ss_dssp             SHHHHHH------TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT
T ss_pred             CHHHHHh------cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC
Confidence            8888775      689877552 22            223333333343   2445666666   777654433 33333


Q ss_pred             hhcCceEEEccCc
Q 025154          153 DKASMGCLIAPTL  165 (257)
Q Consensus       153 ~~~gipvl~spNf  165 (257)
                      ......+.++|=|
T Consensus       164 ~~~~f~v~~~PEr  176 (444)
T 3vtf_A          164 GGVKFSVASNPEF  176 (444)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCCceeecCccc
Confidence            2223667777765

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=94.98  E-value=0.092  Score=46.26  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=27.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +++|.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   33 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLE-AGYLPVVID   33 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            46899999999999999998875 478887654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.97  E-value=0.095  Score=47.88  Aligned_cols=91  Identities=13%  Similarity=0.095  Sum_probs=56.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchh-----hhhcCCCCCCeee--e-
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIG-----MVCDMEQPLEIPV--M-   91 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~g-----~~~g~~~~~gv~v--~-   91 (257)
                      .||.|+|+ |..|..+++.+.. .|+.=+.++|..                ..|+.-.     .+..+  ...+.+  + 
T Consensus        37 ~~VlivG~-GGlG~~ia~~La~-~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~l--np~v~v~~~~  112 (346)
T 1y8q_A           37 SRVLLVGL-KGLGAEIAKNLIL-AGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNL--NPMVDVKVDT  112 (346)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHT--CTTSEEEEEC
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhH--CCCeEEEEEe
Confidence            48999996 9999999999874 466555677632                1111110     11111  112222  2 


Q ss_pred             cC----HHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEe
Q 025154           92 SD----LTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus        92 ~d----l~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      .+    .++.+.      .+|+|||.+. ++.-...-..|.++++|+|.+
T Consensus       113 ~~~~~~~~~~~~------~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~  156 (346)
T 1y8q_A          113 EDIEKKPESFFT------QFDAVCLTCCSRDVIVKVDQICHKNSIKFFTG  156 (346)
T ss_dssp             SCGGGCCHHHHT------TCSEEEEESCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCcchHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            12    245553      7899999874 455566668888899999865

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.97  E-value=0.031  Score=55.09  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=26.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||.|+|+ |..|..+++.++ ..|+.=+.++|.
T Consensus       328 ~kVLIVGa-GGLGs~va~~La-~aGVG~ItLvD~  359 (598)
T 3vh1_A          328 TKVLLLGA-GTLGCYVSRALI-AWGVRKITFVDN  359 (598)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTTCCEEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHH-HcCCCEEEEECC
Confidence            58999996 999999999887 457766667773

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.96  E-value=0.14  Score=45.90  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=41.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEecCC--CCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHS--VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~--~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      .|+||+|+|+ |.||..++..+... ++  +|+ .+|...  .|. +.++.... ...+..+.|+ +.+.      ++|+
T Consensus        13 ~~~kV~ViGa-G~vG~~~a~~l~~~-g~~~ev~-L~Di~~~~~g~-a~dl~~~~-~~~i~~t~d~-~~l~------~aD~   80 (303)
T 2i6t_A           13 TVNKITVVGG-GELGIACTLAISAK-GIADRLV-LLDLSEGTKGA-TMDLEIFN-LPNVEISKDL-SASA------HSKV   80 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHH-TCCSEEE-EECCC-----C-HHHHHHHT-CTTEEEESCG-GGGT------TCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhc-CCCCEEE-EEcCCcchHHH-HHHHhhhc-CCCeEEeCCH-HHHC------CCCE
Confidence            3689999996 99999999887644 44  444 567432  111 11222111 1256667888 4453      7999


Q ss_pred             EEEc
Q 025154          110 VIDF  113 (257)
Q Consensus       110 vIDF  113 (257)
                      ||..
T Consensus        81 Vi~a   84 (303)
T 2i6t_A           81 VIFT   84 (303)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8865

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.92  E-value=0.087  Score=48.28  Aligned_cols=92  Identities=16%  Similarity=0.212  Sum_probs=55.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC------------cchhh---------hhcCCCCCCeeeec--
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG------------EDIGM---------VCDMEQPLEIPVMS--   92 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g------------~d~g~---------~~g~~~~~gv~v~~--   92 (257)
                      -||.|+|+ |..|..+++.++. .++.=+.++|.....            .|+|.         +..+.....+..+.  
T Consensus       119 ~~VlvvG~-GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  196 (353)
T 3h5n_A          119 AKVVILGC-GGIGNHVSVILAT-SGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN  196 (353)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHh-CCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence            58999996 9999999998875 466556677743110            11110         00000011121111  


Q ss_pred             -----CHHHHHhccccCCCccEEEEcCC-hH-hHHHHHHHHHHcCCCeEEe
Q 025154           93 -----DLTMVLGSISQSKARAVVIDFTD-AS-TVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus        93 -----dl~~~l~~~~~~~~~DVvIDFT~-p~-~~~~~~~~a~~~Gi~vViG  136 (257)
                           ++++ +      .++|+|||.+. ++ .-...-..|.++|+|+|.+
T Consensus       197 i~~~~~~~~-~------~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~  240 (353)
T 3h5n_A          197 INDYTDLHK-V------PEADIWVVSADHPFNLINWVNKYCVRANQPYINA  240 (353)
T ss_dssp             CCSGGGGGG-S------CCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred             cCchhhhhH-h------ccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEE
Confidence                 1333 4      37999999884 44 4555668899999999965

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=94.87  E-value=0.18  Score=42.65  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=25.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |||.|+|++|.+|+.+++.+. . +.++++..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~   30 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLS-E-RHEVIKVY   30 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHT-T-TSCEEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHh-c-CCeEEEec
Confidence            589999999999999999887 3 68877644

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.83  E-value=0.03  Score=51.52  Aligned_cols=65  Identities=14%  Similarity=0.083  Sum_probs=44.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -++|+|+| +|+||+.+++.+. .-++++. ++|+..  .+.....    ..|+...+++++++.      .+|+|+-..
T Consensus       164 gktvGIIG-~G~IG~~vA~~l~-~~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~l~ell~------~aDvV~l~~  228 (351)
T 3jtm_A          164 GKTIGTVG-AGRIGKLLLQRLK-PFGCNLL-YHDRLQ--MAPELEK----ETGAKFVEDLNEMLP------KCDVIVINM  228 (351)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHG-GGCCEEE-EECSSC--CCHHHHH----HHCCEECSCHHHHGG------GCSEEEECS
T ss_pred             CCEEeEEE-eCHHHHHHHHHHH-HCCCEEE-EeCCCc--cCHHHHH----hCCCeEcCCHHHHHh------cCCEEEECC
Confidence            46999999 5999999999876 4588865 566532  1111111    235555679999996      699988654

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=94.81  E-value=0.04  Score=47.07  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=26.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |.+|.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~   33 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGT-LAHEVRLSD   33 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGG-TEEEEEECC
T ss_pred             CceEEEECCCCHHHHHHHHHHHh-CCCEEEEEe
Confidence            45899999999999999998875 467776543

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=94.80  E-value=0.12  Score=48.85  Aligned_cols=135  Identities=13%  Similarity=0.163  Sum_probs=77.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCCe------------eeecCHHHHH
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI------------PVMSDLTMVL   98 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~gv------------~v~~dl~~~l   98 (257)
                      .+|+|.| .|.||+..++.+. +.+.++|++.|+.     ..|-|..++.......+.            ..+.+.++++
T Consensus       211 k~vaVqG-~GnVG~~aa~~L~-e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~  288 (421)
T 1v9l_A          211 KTVAIQG-MGNVGRWTAYWLE-KMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIF  288 (421)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGG
T ss_pred             CEEEEEC-cCHHHHHHHHHHH-HCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhh
Confidence            6899999 5999999998776 5699999999953     234454444322212221            1121335666


Q ss_pred             hccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH---HHHH-H
Q 025154           99 GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-L  172 (257)
Q Consensus        99 ~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl---Gvnl-l  172 (257)
                      .     .++||++-+..+....  ...+-+.+..+|++--  .++++..+   .+.++   .|++.|-+..   ||.. -
T Consensus       289 ~-----~~~Dil~P~A~~~~I~--~~~a~~l~ak~V~EgAN~p~t~~a~~---~l~~~---Gi~~~PD~~aNaGGV~~S~  355 (421)
T 1v9l_A          289 K-----LDVDIFVPAAIENVIR--GDNAGLVKARLVVEGANGPTTPEAER---ILYER---GVVVVPDILANAGGVIMSY  355 (421)
T ss_dssp             G-----CCCSEEEECSCSSCBC--TTTTTTCCCSEEECCSSSCBCHHHHH---HHHTT---TCEEECHHHHSTHHHHHHH
T ss_pred             c-----CCccEEEecCcCCccc--hhhHHHcCceEEEecCCCcCCHHHHH---HHHHC---CCEEeChHHhhCCCeeeeH
Confidence            5     4899999876544331  1222345889998865  35554332   23333   4555554432   6654 1


Q ss_pred             HHHHHHhcCCCCC
Q 025154          173 QQAAISASFHYKN  185 (257)
Q Consensus       173 ~~~a~~l~~~~~D  185 (257)
                      .+..+-+....|+
T Consensus       356 ~E~~qn~~~~~w~  368 (421)
T 1v9l_A          356 LEWVENLQWYIWD  368 (421)
T ss_dssp             HHHHHHHTTCCCC
T ss_pred             HHHHhhccccCCC
Confidence            2233444444444

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=94.79  E-value=0.027  Score=51.93  Aligned_cols=68  Identities=9%  Similarity=0.097  Sum_probs=45.7

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ...+|+|+| +|+||+.+++.+. .-+++ +. ++|+.....+  ..    ...|+...+++++++.      .+|+|+.
T Consensus       163 ~g~tvgIIG-~G~IG~~vA~~l~-~~G~~~V~-~~d~~~~~~~--~~----~~~g~~~~~~l~ell~------~aDvV~l  227 (364)
T 2j6i_A          163 EGKTIATIG-AGRIGYRVLERLV-PFNPKELL-YYDYQALPKD--AE----EKVGARRVENIEELVA------QADIVTV  227 (364)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHG-GGCCSEEE-EECSSCCCHH--HH----HHTTEEECSSHHHHHH------TCSEEEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHH-hCCCcEEE-EECCCccchh--HH----HhcCcEecCCHHHHHh------cCCEEEE
Confidence            346899999 5999999999876 45785 65 4664321111  11    1345555678999986      7999997


Q ss_pred             cCCh
Q 025154          113 FTDA  116 (257)
Q Consensus       113 FT~p  116 (257)
                      ....
T Consensus       228 ~~P~  231 (364)
T 2j6i_A          228 NAPL  231 (364)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7643

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.77  E-value=0.047  Score=49.38  Aligned_cols=69  Identities=22%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCC--CCcchhhhhcCCCCCCeeee----cCHHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~--~g~d~g~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~D  108 (257)
                      |||+|+||+|.+|+.++..+... +-..=+..+|...  .|. +-++...  +..+.+.    ++..+.+.      ++|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~-a~Dl~~~--~~~~~v~~~~~~~~~~~~~------~aD   71 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGV-AVDLSHI--PTAVKIKGFSGEDATPALE------GAD   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHH-HHHHHTS--CSSEEEEEECSSCCHHHHT------TCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhH-HHHhhCC--CCCceEEEecCCCcHHHhC------CCC
Confidence            69999998899999999888765 4333344677542  111 1122222  2333443    24445553      799


Q ss_pred             EEEEc
Q 025154          109 VVIDF  113 (257)
Q Consensus       109 VvIDF  113 (257)
                      ++|-.
T Consensus        72 ivii~   76 (312)
T 3hhp_A           72 VVLIS   76 (312)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88854

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.70  E-value=0.08  Score=47.50  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=26.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~v   67 (257)
                      ++|.|+|++|.+|+.+++.+.+.++. ++++..
T Consensus        22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~   54 (344)
T 2gn4_A           22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS   54 (344)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEE
Confidence            68999999999999999999876465 776543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.64  E-value=0.065  Score=48.80  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .++||+|+|+ |.||..++..+...+-+.=+..+|.
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~   42 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            3579999996 9999999988876554433345774

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.63  E-value=0.072  Score=45.77  Aligned_cols=31  Identities=16%  Similarity=0.213  Sum_probs=25.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      |.+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~-~G~~V~~~   33 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAP-MAEILRLA   33 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGG-GEEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-cCCEEEEE
Confidence            46799999999999999998875 46776644

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.62  E-value=0.019  Score=50.80  Aligned_cols=81  Identities=11%  Similarity=0.050  Sum_probs=44.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +|||+|+|+ |.||..++..+.+. +.++. ++++...+.+.....|   .....+..+..+.+.     ..+|+||-++
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~g---~~~~~~~~~~~~~~~-----~~~D~vilav   70 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQS-LPHTT-LIGRHAKTITYYTVPH---APAQDIVVKGYEDVT-----NTFDVIIIAV   70 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHH-CTTCE-EEESSCEEEEEESSTT---SCCEEEEEEEGGGCC-----SCEEEEEECS
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHC-CCeEE-EEEeccCcEEEEecCC---eeccceecCchHhcC-----CCCCEEEEeC
Confidence            479999996 99999999888754 44444 3443311111110001   111233333333332     3789999888


Q ss_pred             ChHhHHHHHHHH
Q 025154          115 DASTVYDNVKQA  126 (257)
Q Consensus       115 ~p~~~~~~~~~a  126 (257)
                      .+..+.+.+...
T Consensus        71 k~~~~~~~l~~l   82 (294)
T 3g17_A           71 KTHQLDAVIPHL   82 (294)
T ss_dssp             CGGGHHHHGGGH
T ss_pred             CccCHHHHHHHH
Confidence            776666555433

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=94.60  E-value=0.089  Score=46.56  Aligned_cols=32  Identities=19%  Similarity=0.187  Sum_probs=26.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCC-----cEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARG-----MEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-----~eLvg~vd   68 (257)
                      +||.|+|++|.+|+.+++.+.+ .+     .++++...
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~-~g~~~~~~~V~~~~r   38 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPL-ADTPGGPWKVYGVAR   38 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTS-TTCTTCSEEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHh-CCCCCCceEEEEEeC
Confidence            6899999999999999998875 45     78776553

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.59  E-value=0.11  Score=46.64  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=26.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..||.|+|+ |..|..+++.++.. ++-=+.++|.
T Consensus        36 ~~~VlVvGa-GGlGs~va~~La~a-GVG~i~lvD~   68 (292)
T 3h8v_A           36 TFAVAIVGV-GGVGSVTAEMLTRC-GIGKLLLFDY   68 (292)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHH-TCSEEEEECC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHc-CCCEEEEECC
Confidence            359999996 99999999988754 6555567774

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=94.59  E-value=0.051  Score=49.18  Aligned_cols=65  Identities=11%  Similarity=0.089  Sum_probs=43.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .++|+|+| +|+||+.+++.+. ..++++. ++|+...  ......    ..++... ++++++.      .+|+||...
T Consensus       155 g~~vgIIG-~G~iG~~iA~~l~-~~G~~V~-~~d~~~~--~~~~~~----~~g~~~~-~l~e~l~------~aDvVi~~v  218 (330)
T 2gcg_A          155 QSTVGIIG-LGRIGQAIARRLK-PFGVQRF-LYTGRQP--RPEEAA----EFQAEFV-STPELAA------QSDFIVVAC  218 (330)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHG-GGTCCEE-EEESSSC--CHHHHH----TTTCEEC-CHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCc--chhHHH----hcCceeC-CHHHHHh------hCCEEEEeC
Confidence            46899999 5999999999876 4578865 4664321  111111    2345444 8888885      689998776


Q ss_pred             C
Q 025154          115 D  115 (257)
Q Consensus       115 ~  115 (257)
                      .
T Consensus       219 p  219 (330)
T 2gcg_A          219 S  219 (330)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.52  E-value=0.13  Score=46.19  Aligned_cols=87  Identities=16%  Similarity=0.061  Sum_probs=47.8

Q ss_pred             CceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |+||.++|. |++|.. +++.+. +.++++. +.|..........+.    ..|++++  .+.+.+.+     .++|+||
T Consensus         4 ~~~i~~iGi-Gg~Gms~~A~~L~-~~G~~V~-~~D~~~~~~~~~~L~----~~gi~v~~g~~~~~l~~-----~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGI-GGTFMGGLAAIAK-EAGFEVS-GCDAKMYPPMSTQLE----ALGIDVYEGFDAAQLDE-----FKADVYV   71 (326)
T ss_dssp             CCEEEEESC-CSHHHHHHHHHHH-HTTCEEE-EEESSCCTTHHHHHH----HTTCEEEESCCGGGGGS-----CCCSEEE
T ss_pred             CcEEEEEEE-CHHHHHHHHHHHH-hCCCEEE-EEcCCCCcHHHHHHH----hCCCEEECCCCHHHcCC-----CCCCEEE
Confidence            679999995 999996 776554 6788876 477532111112222    3466664  34444431     1589877


Q ss_pred             EcC-ChHhHHHHHHHHHHcCCCeE
Q 025154          112 DFT-DASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       112 DFT-~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      --+ .|.. .+.+..|.++|+|++
T Consensus        72 ~Spgi~~~-~p~~~~a~~~gi~v~   94 (326)
T 3eag_A           72 IGNVAKRG-MDVVEAILNLGLPYI   94 (326)
T ss_dssp             ECTTCCTT-CHHHHHHHHTTCCEE
T ss_pred             ECCCcCCC-CHHHHHHHHcCCcEE
Confidence            432 1222 233444555555543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.50  E-value=0.19  Score=47.35  Aligned_cols=136  Identities=20%  Similarity=0.271  Sum_probs=77.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-eee-ecCHHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPV-MSDLTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~g-v~v-~~dl~~~l~~~~~~~~~  107 (257)
                      ..+|+|.| .|.+|+..++.+. +.+.++|++.|+.     ..|-|...+.......+ +.- .-+.++++.     .++
T Consensus       218 gk~vaVqG-~GnVG~~~a~~L~-~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~-----~~~  290 (419)
T 3aoe_E          218 GARVVVQG-LGQVGAAVALHAE-RLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFG-----LEA  290 (419)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGG-----SSC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhc-----cCc
Confidence            36899999 5999999999876 4699999999962     33545443321100111 100 012245555     489


Q ss_pred             cEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH---HHHH-HHHHHHHhc
Q 025154          108 AVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-LQQAAISAS  180 (257)
Q Consensus       108 DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl---Gvnl-l~~~a~~l~  180 (257)
                      ||++-++.+... .+++   .+.+..+|++--  .++++..+.|   .++   .|++.|-+..   ||.. -.+..+-+.
T Consensus       291 DVliP~A~~n~i~~~~A---~~l~ak~V~EgAN~p~t~~A~~~L---~~~---Gi~~~PD~~aNaGGV~~S~~E~~qn~~  361 (419)
T 3aoe_E          291 EVLVLAAREGALDGDRA---RQVQAQAVVEVANFGLNPEAEAYL---LGK---GALVVPDLLSGGGGLLASYLEWVQDLN  361 (419)
T ss_dssp             SEEEECSCTTCBCHHHH---TTCCCSEEEECSTTCBCHHHHHHH---HHH---TCEEECHHHHTCHHHHHHHHHHHHHHH
T ss_pred             eEEEecccccccccchH---hhCCceEEEECCCCcCCHHHHHHH---HHC---CCEEECHHHHhCCCchhhHHHHhhccc
Confidence            999998866544 3333   345899999865  3455443333   333   4555554432   6643 122344444


Q ss_pred             CCCCCe
Q 025154          181 FHYKNV  186 (257)
Q Consensus       181 ~~~~Di  186 (257)
                      ...|+-
T Consensus       362 ~~~w~~  367 (419)
T 3aoe_E          362 MFFWSP  367 (419)
T ss_dssp             TCCCCH
T ss_pred             ccCCCH
Confidence            445543

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=94.49  E-value=0.15  Score=49.35  Aligned_cols=95  Identities=14%  Similarity=0.117  Sum_probs=58.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchh-----hhhcCCCCCCeee---e
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIG-----MVCDMEQPLEIPV---M   91 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g-----~~~g~~~~~gv~v---~   91 (257)
                      .||.|+|+ |..|..+++.+. ..|+.=+.++|...                .|+.-.     .+..+  ...+.+   .
T Consensus        33 ~~VlvvG~-GGlGseiak~La-~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~l--Np~v~v~~~~  108 (531)
T 1tt5_A           33 AHVCLINA-TATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL--NSDVSGSFVE  108 (531)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTT--CTTSBCCEES
T ss_pred             CeEEEECc-CHHHHHHHHHHH-HcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHh--CCCCeEEEeC
Confidence            58999996 999999999987 56776667788321                121111     11111  112222   2


Q ss_pred             cCHHHHHh---ccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEe
Q 025154           92 SDLTMVLG---SISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus        92 ~dl~~~l~---~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      .+++++++   ++.  ..+|+|||.+. ++.-......|.++++|+|.+
T Consensus       109 ~~~~~~~~~~~~~~--~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~  155 (531)
T 1tt5_A          109 ESPENLLDNDPSFF--CRFTVVVATQLPESTSLRLADVLWNSQIPLLIC  155 (531)
T ss_dssp             SCHHHHHHSCGGGG--GGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcchhhhhhHHHh--cCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            34443211   000  26899999984 555566778899999999976

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=94.48  E-value=0.18  Score=49.25  Aligned_cols=35  Identities=23%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .+++|.|+|++|.+|+.+++.+.+.++.++++...
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r  348 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI  348 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEES
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEc
Confidence            46799999999999999999988766788876543

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=94.45  E-value=0.047  Score=49.30  Aligned_cols=89  Identities=10%  Similarity=0.009  Sum_probs=57.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCC-CCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQP-LEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~~-~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..+|+|+|+ |.||+.+++.+....+.+.+.++++..  ..+.+++.. ... .++. ++++++++ +      +|+||-
T Consensus       125 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~--~~a~~la~~~~~~~~~~~-~~~~~e~v-~------aDvVi~  193 (322)
T 1omo_A          125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISAS-VQPAEEAS-R------CDVLVT  193 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEE-ECCHHHHT-S------SSEEEE
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhcCceEE-ECCHHHHh-C------CCEEEE
Confidence            469999995 999999999988766788888888641  112222210 000 2345 78888876 3      899997


Q ss_pred             cCChHhHHHHH-HHHHHcCCCeEEe
Q 025154          113 FTDASTVYDNV-KQATAFGMRSVVY  136 (257)
Q Consensus       113 FT~p~~~~~~~-~~a~~~Gi~vViG  136 (257)
                      .|....  ..+ ..+++.|++++.-
T Consensus       194 aTp~~~--pv~~~~~l~~G~~V~~i  216 (322)
T 1omo_A          194 TTPSRK--PVVKAEWVEEGTHINAI  216 (322)
T ss_dssp             CCCCSS--CCBCGGGCCTTCEEEEC
T ss_pred             eeCCCC--ceecHHHcCCCeEEEEC
Confidence            775321  222 2456788887743

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=94.45  E-value=0.084  Score=48.41  Aligned_cols=63  Identities=17%  Similarity=0.164  Sum_probs=44.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+..  .+... .     .++...+++++++.      .+|+|+-..
T Consensus       173 gktvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~dr~~--~~~~~-~-----~g~~~~~~l~ell~------~sDvV~l~~  235 (345)
T 4g2n_A          173 GRRLGIFG-MGRIGRAIATRAR-GFGLAIHY-HNRTR--LSHAL-E-----EGAIYHDTLDSLLG------ASDIFLIAA  235 (345)
T ss_dssp             TCEEEEES-CSHHHHHHHHHHH-TTTCEEEE-ECSSC--CCHHH-H-----TTCEECSSHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEE-eChhHHHHHHHHH-HCCCEEEE-ECCCC--cchhh-h-----cCCeEeCCHHHHHh------hCCEEEEec
Confidence            36899999 6999999999876 45888765 66532  11111 1     14445579999996      799988655

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=94.43  E-value=0.54  Score=44.00  Aligned_cols=97  Identities=11%  Similarity=0.087  Sum_probs=58.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCC---C----------------------CCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDME---Q----------------------PLE   87 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~---~----------------------~~g   87 (257)
                      +|.||.|.|+||-+|+.....+.+.|+ +++++.....    ++..+....   .                      ..+
T Consensus         8 ~~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag~----nv~~L~~q~~~f~p~~v~v~d~~~~~~L~~~l~~~~~~   83 (406)
T 1q0q_A            8 GMKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK----NVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSR   83 (406)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS----CHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             CceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcCC----CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhcCCCC
Confidence            578999999999999999999998876 9999987632    111111000   0                      012


Q ss_pred             eeeecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154           88 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus        88 v~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      +.++.-.+.+. ++++..++|+|+-.-.-.+-+.-...|++.|+.+-.
T Consensus        84 ~~v~~G~~~l~-~~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaL  130 (406)
T 1q0q_A           84 TEVLSGQQAAC-DMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL  130 (406)
T ss_dssp             CEEEESHHHHH-HHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEE
T ss_pred             cEEEeCHHHHH-HHhcCCCCCEEEEccccHhHHHHHHHHHHCCCeEEE
Confidence            22322222221 122224578877665555555556667788888776

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=94.43  E-value=0.11  Score=45.22  Aligned_cols=31  Identities=16%  Similarity=0.262  Sum_probs=25.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhc-CCcEEEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~v   67 (257)
                      ||.|+|++|.+|+.+++.+.+. .+.++++..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~   32 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASD   32 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEE
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence            6899999999999999998876 467777653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.42  E-value=0.075  Score=47.71  Aligned_cols=93  Identities=16%  Similarity=0.197  Sum_probs=54.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC-------CCCCeeeecCHHHHHhccccCC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSK  105 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--g~~-------~~~gv~v~~dl~~~l~~~~~~~  105 (257)
                      +|||+|+|+ |.||..++..+.+ .+.++. ++++.   .....+.  |..       ....+.++++++++ .      
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~-~g~~V~-~~~r~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------   69 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLAL-AGEAIN-VLARG---ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-G------   69 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHH-TTCCEE-EECCH---HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-C------
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEE-EEECh---HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-C------
Confidence            579999996 9999999998875 456554 34431   1111111  000       01123446788764 3      


Q ss_pred             CccEEEEcCChHhHHHHHHHHH---HcCCCeEEeCCCC
Q 025154          106 ARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHI  140 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~a~---~~Gi~vViGTTG~  140 (257)
                      ++|+||-++.+....+.+....   ..+..+|+-+.|+
T Consensus        70 ~~D~Vilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           70 EQDVVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CCSEEEECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CCCEEEEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            7999997776665555444332   2355666666784

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.38  E-value=0.32  Score=38.12  Aligned_cols=121  Identities=14%  Similarity=0.185  Sum_probs=64.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCeee-e---cCHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g--~d~g~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DV  109 (257)
                      .+|.|+|+ |++|+.+++.+.+ .+.+++. +|+....  +.+.+..    +.++.+ +   .+.+.+.+.  .-.++|+
T Consensus         4 ~~vlI~G~-G~vG~~la~~L~~-~g~~V~v-id~~~~~~~~~~~~~~----~~~~~~i~gd~~~~~~l~~a--~i~~ad~   74 (153)
T 1id1_A            4 DHFIVCGH-SILAINTILQLNQ-RGQNVTV-ISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKA--GIDRCRA   74 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHH-TTCCEEE-EECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHH--TTTTCSE
T ss_pred             CcEEEECC-CHHHHHHHHHHHH-CCCCEEE-EECCChHHHHHHHHhh----cCCCeEEEcCCCCHHHHHHc--ChhhCCE
Confidence            47999995 9999999998875 4677775 4442100  0111111    123322 2   222222110  0037898


Q ss_pred             EEEcCChHhH-HHHHHHHHHc-C-CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          110 VIDFTDASTV-YDNVKQATAF-G-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       110 vIDFT~p~~~-~~~~~~a~~~-G-i~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      +|-.+..+.. ......+.+. + .++|.-..+  ++..+.+    ++.|+..+++|....+-.+
T Consensus        75 vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~--~~~~~~l----~~~G~~~vi~p~~~~~~~l  133 (153)
T 1id1_A           75 ILALSDNDADNAFVVLSAKDMSSDVKTVLAVSD--SKNLNKI----KMVHPDIILSPQLFGSEIL  133 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEEECSS--GGGHHHH----HTTCCSEEECHHHHHHHHH
T ss_pred             EEEecCChHHHHHHHHHHHHHCCCCEEEEEECC--HHHHHHH----HHcCCCEEEcHHHHHHHHH
Confidence            8877754443 3333444454 4 455544443  2333344    4467777888877666433

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.35  E-value=0.23  Score=45.09  Aligned_cols=31  Identities=10%  Similarity=0.172  Sum_probs=26.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      -+|.|+|++|.+|...++++. ..+.++++..
T Consensus       166 ~~VlV~Ga~G~vG~~a~qla~-~~Ga~Vi~~~  196 (371)
T 3gqv_A          166 VYVLVYGGSTATATVTMQMLR-LSGYIPIATC  196 (371)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHH-HCCCEEEEEe
Confidence            479999998999999998765 5688888775

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.32  E-value=0.4  Score=43.25  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=42.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCeeeecCHHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~g~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (257)
                      ++||+|+|+ |.||..++..++. .++ + +..+|....   +  .+...... ...+..+..++|+ +.+.      ++
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~-~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~------~a   83 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQ-KDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQ------NS   83 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT------TC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHC------CC
Confidence            369999997 9999999987765 455 7 667885421   1  01111110 0012245556788 5553      79


Q ss_pred             cEEEEcC
Q 025154          108 AVVIDFT  114 (257)
Q Consensus       108 DVvIDFT  114 (257)
                      |+||...
T Consensus        84 D~VI~av   90 (328)
T 2hjr_A           84 DVVIITA   90 (328)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9988764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.31  E-value=0.067  Score=47.61  Aligned_cols=99  Identities=10%  Similarity=0.083  Sum_probs=56.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC----------HHHHHhccccC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD----------LTMVLGSISQS  104 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d----------l~~~l~~~~~~  104 (257)
                      +|||+|+|+ |.||..++..+.  .+.++.. +++..  .....+.    +.|+.+..+          .++..      
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~--~g~~V~~-~~r~~--~~~~~l~----~~G~~~~~~~~~~~~~~~~~~~~~------   65 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS--LYHDVTV-VTRRQ--EQAAAIQ----SEGIRLYKGGEEFRADCSADTSIN------   65 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH--TTSEEEE-ECSCH--HHHHHHH----HHCEEEEETTEEEEECCEEESSCC------
T ss_pred             CCEEEEECC-CHHHHHHHHHHh--cCCceEE-EECCH--HHHHHHH----hCCceEecCCCeeccccccccccc------
Confidence            589999996 999999998877  5777664 44321  1111121    112222110          01222      


Q ss_pred             CCccEEEEcCChHhHHHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHH
Q 025154          105 KARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAF  151 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~~~Gi~-vViGTTG~s~e~~~~L~~~  151 (257)
                      ..+|+||-++.+..+.+.+......+-. +|+-.-|+..+  +.|+++
T Consensus        66 ~~~D~vilavK~~~~~~~l~~l~~~~~~~ivs~~nGi~~~--e~l~~~  111 (307)
T 3ego_A           66 SDFDLLVVTVKQHQLQSVFSSLERIGKTNILFLQNGMGHI--HDLKDW  111 (307)
T ss_dssp             SCCSEEEECCCGGGHHHHHHHTTSSCCCEEEECCSSSHHH--HHHHTC
T ss_pred             CCCCEEEEEeCHHHHHHHHHHhhcCCCCeEEEecCCccHH--HHHHHh
Confidence            3789999888777776666554332211 66666788754  245544

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.31  E-value=0.072  Score=50.93  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=25.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +.||+|+|+ |.||..++..++. .+++++ ++|.
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~-aG~~V~-l~D~   36 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAAS-HGHQVL-LYDI   36 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHH-TTCCEE-EECS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEEC
Confidence            458999995 9999999998774 578765 4664

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=94.30  E-value=0.13  Score=45.96  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=27.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ++|.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   56 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLE-KGYEVHGIVR   56 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             cEEEEECCCchHHHHHHHHHHH-CCCEEEEEEC
Confidence            5899999999999999998876 4788887553

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.29  E-value=0.059  Score=50.09  Aligned_cols=90  Identities=20%  Similarity=0.263  Sum_probs=52.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ..+|+|+|+ |.||+.+++.+... ++ +++ ++++..  ..+.+++.   .+|..+  ++++++++.      .+|+||
T Consensus       167 g~~VlIiGa-G~iG~~~a~~l~~~-G~~~V~-v~~r~~--~ra~~la~---~~g~~~~~~~~l~~~l~------~aDvVi  232 (404)
T 1gpj_A          167 DKTVLVVGA-GEMGKTVAKSLVDR-GVRAVL-VANRTY--ERAVELAR---DLGGEAVRFDELVDHLA------RSDVVV  232 (404)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHHH-CCSEEE-EECSSH--HHHHHHHH---HHTCEECCGGGHHHHHH------TCSEEE
T ss_pred             CCEEEEECh-HHHHHHHHHHHHHC-CCCEEE-EEeCCH--HHHHHHHH---HcCCceecHHhHHHHhc------CCCEEE
Confidence            358999996 99999999988754 66 554 556431  11112221   122222  457777774      799999


Q ss_pred             EcCChHh-H--HHHHHH-HHH---cCCCeEEeCC
Q 025154          112 DFTDAST-V--YDNVKQ-ATA---FGMRSVVYVP  138 (257)
Q Consensus       112 DFT~p~~-~--~~~~~~-a~~---~Gi~vViGTT  138 (257)
                      +.|.... .  .+.+.. +++   .+.-++++..
T Consensus       233 ~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          233 SATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             ECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             EccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            9984222 1  144444 343   3555667754

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=94.28  E-value=0.17  Score=47.58  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=30.8

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEe
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAID   68 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd   68 (257)
                      ...+++|.|+|++|.+|+.+++.+.+.+  +.++++...
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R  108 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVR  108 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            3457899999999999999999998765  678887664

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.23  E-value=0.14  Score=44.66  Aligned_cols=80  Identities=21%  Similarity=0.257  Sum_probs=50.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.               +.+.     ..+. +..|.|
T Consensus        30 k~vlVTGas~gIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~-----~~~~~~~~Dv~   85 (277)
T 3gvc_A           30 KVAIVTGAGAGIGLAVARRLAD-EGCHVLC-ADIDG--DAADAAA---------------TKIG-----CGAAACRVDVS   85 (277)
T ss_dssp             CEEEETTTTSTHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHHH---------------HHHC-----SSCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHcC-----CcceEEEecCC
Confidence            4689999999999999998875 5787764 44321  1111110               1111     1222 446888


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus        86 d~~~v~~~~~~~~~~~g~iD~lvnnAg  112 (277)
T 3gvc_A           86 DEQQIIAMVDACVAAFGGVDKLVANAG  112 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888888777766554  6888876654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=94.23  E-value=0.068  Score=46.76  Aligned_cols=66  Identities=20%  Similarity=0.259  Sum_probs=43.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      ||+|+|+ |.||+.++..+.. .+.+=+-++++..  ..+.+++   ..++...++++++.+.      ++|+||..|+
T Consensus       110 ~vliiGa-Gg~a~ai~~~L~~-~G~~~I~v~nR~~--~ka~~la---~~~~~~~~~~~~~~~~------~aDiVInatp  175 (253)
T 3u62_A          110 PVVVVGA-GGAARAVIYALLQ-MGVKDIWVVNRTI--ERAKALD---FPVKIFSLDQLDEVVK------KAKSLFNTTS  175 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHH-TTCCCEEEEESCH--HHHHTCC---SSCEEEEGGGHHHHHH------TCSEEEECSS
T ss_pred             eEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHH---HHcccCCHHHHHhhhc------CCCEEEECCC
Confidence            8999996 9999999998875 4563344566531  1222232   2334334567777775      7999998774

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.23  E-value=0.23  Score=45.09  Aligned_cols=30  Identities=27%  Similarity=0.434  Sum_probs=24.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ||+|+|+ |-||+.|+...+ ..+++++ ++|.
T Consensus         8 ~VaViGa-G~MG~giA~~~a-~~G~~V~-l~D~   37 (319)
T 3ado_A            8 DVLIVGS-GLVGRSWAMLFA-SGGFRVK-LYDI   37 (319)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCCEE-EECS
T ss_pred             eEEEECC-cHHHHHHHHHHH-hCCCeEE-EEEC
Confidence            8999996 999999998766 5688866 5664

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=94.18  E-value=0.14  Score=44.59  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      ++++|.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   43 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTE-QNVEVFGTS   43 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CcceEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            467999999999999999998875 478888744

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.17  E-value=0.19  Score=44.69  Aligned_cols=72  Identities=19%  Similarity=0.148  Sum_probs=40.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCC--C-C--cchhhhhcCCCCCCeee-ecCHHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHS--V-G--EDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~--~-g--~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~  107 (257)
                      ||||+|+|+ |.||..++..+....- .+++ .+|...  . +  .+....... ....+.+ +.|+ +.+.      ++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~-l~d~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~d~-~~~~------~a   70 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMAN-LEAHGNIVINDW-AALA------DA   70 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGG-SSSCCEEEESCG-GGGT------TC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEcCCHHHHHHHHHHHHhhhhh-cCCCeEEEeCCH-HHhC------CC
Confidence            579999995 9999999998875531 3444 566431  0 0  011100000 0112344 4677 5553      79


Q ss_pred             cEEEEcCCh
Q 025154          108 AVVIDFTDA  116 (257)
Q Consensus       108 DVvIDFT~p  116 (257)
                      |+||-...+
T Consensus        71 DvViiav~~   79 (309)
T 1hyh_A           71 DVVISTLGN   79 (309)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEEecCC
Confidence            999876643

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=94.17  E-value=0.059  Score=48.51  Aligned_cols=64  Identities=22%  Similarity=0.165  Sum_probs=43.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| +|+||+.+++.+. .-++++. ++|+..  ... ...    ..|+.. .++++++.      .+|+|+...
T Consensus       142 g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~--~~~-~~~----~~g~~~-~~l~ell~------~aDvVvl~~  204 (313)
T 2ekl_A          142 GKTIGIVG-FGRIGTKVGIIAN-AMGMKVL-AYDILD--IRE-KAE----KINAKA-VSLEELLK------NSDVISLHV  204 (313)
T ss_dssp             TCEEEEES-CSHHHHHHHHHHH-HTTCEEE-EECSSC--CHH-HHH----HTTCEE-CCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-eCHHHHHHHHHHH-HCCCEEE-EECCCc--chh-HHH----hcCcee-cCHHHHHh------hCCEEEEec
Confidence            46899999 5999999999877 4578876 466532  111 111    234443 48888885      689988765


Q ss_pred             C
Q 025154          115 D  115 (257)
Q Consensus       115 ~  115 (257)
                      .
T Consensus       205 P  205 (313)
T 2ekl_A          205 T  205 (313)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=94.16  E-value=0.075  Score=49.64  Aligned_cols=66  Identities=15%  Similarity=0.096  Sum_probs=44.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .++|+|+| .|+||+.+++.+. .-++++. ++|+.....+...      ..|+..+.++++++.      .+|+|+...
T Consensus       191 gktvGIIG-lG~IG~~vA~~l~-a~G~~V~-~~d~~~~~~~~~~------~~G~~~~~~l~ell~------~aDvV~l~~  255 (393)
T 2nac_A          191 AMHVGTVA-AGRIGLAVLRRLA-PFDVHLH-YTDRHRLPESVEK------ELNLTWHATREDMYP------VCDVVTLNC  255 (393)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHG-GGTCEEE-EECSSCCCHHHHH------HHTCEECSSHHHHGG------GCSEEEECS
T ss_pred             CCEEEEEe-ECHHHHHHHHHHH-hCCCEEE-EEcCCccchhhHh------hcCceecCCHHHHHh------cCCEEEEec
Confidence            46899999 5999999999876 4578876 4664321111111      234555578999885      699988765


Q ss_pred             C
Q 025154          115 D  115 (257)
Q Consensus       115 ~  115 (257)
                      .
T Consensus       256 P  256 (393)
T 2nac_A          256 P  256 (393)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=94.15  E-value=0.13  Score=46.22  Aligned_cols=60  Identities=20%  Similarity=0.187  Sum_probs=42.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ..++|+|+| +|+||+.+++.+. .-++++. ++|+... ..           +...+.++++++.      .+|+|+-.
T Consensus       123 ~g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~-~~dr~~~-~~-----------~~~~~~~l~ell~------~aDvV~l~  181 (303)
T 1qp8_A          123 QGEKVAVLG-LGEIGTRVGKILA-ALGAQVR-GFSRTPK-EG-----------PWRFTNSLEEALR------EARAAVCA  181 (303)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHH-HTTCEEE-EECSSCC-CS-----------SSCCBSCSHHHHT------TCSEEEEC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCcc-cc-----------CcccCCCHHHHHh------hCCEEEEe
Confidence            346899999 5999999999876 4678876 4665321 10           1223467888885      79998866


Q ss_pred             C
Q 025154          114 T  114 (257)
Q Consensus       114 T  114 (257)
                      .
T Consensus       182 ~  182 (303)
T 1qp8_A          182 L  182 (303)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=94.14  E-value=0.64  Score=40.17  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=53.8

Q ss_pred             cccccccccCccccccCC---CCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee
Q 025154           13 HHISQNVKAKRFISCSTN---PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP   89 (257)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~---~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~   89 (257)
                      ||.+.+.++.+..+...-   ..-...++.|+|++|.+|+.+++.+.+ .+.+++....+..  ....++          
T Consensus         6 ~~~~~~~~~~~~~~~~~mm~~~~l~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~--~~~~~~----------   72 (271)
T 3v2g_A            6 HHSSGVDLGTENLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLAL-EGAAVALTYVNAA--ERAQAV----------   72 (271)
T ss_dssp             --------------CHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH----------
T ss_pred             cccccccccccccchhhhccccCCCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH----------
Confidence            455555665555544321   111224699999999999999998875 5888765543320  111111          


Q ss_pred             eecCHHHHHhccccCCCcc-EEEEcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154           90 VMSDLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus        90 v~~dl~~~l~~~~~~~~~D-VvIDFT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                           .+.+...  ...+. +..|.+.++...+.+..+.+.  ++.+|+=..|
T Consensus        73 -----~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  118 (271)
T 3v2g_A           73 -----VSEIEQA--GGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAG  118 (271)
T ss_dssp             -----HHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             -----HHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence                 0111100  01111 446788888888877766654  7888886655

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.13  E-value=0.16  Score=43.79  Aligned_cols=74  Identities=22%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.. ++...  ...       ..                   .+. +..|.|
T Consensus        29 k~vlVTGas~gIG~aia~~l~~-~G~~V~~~-~r~~~--~~~-------~~-------------------~~~~~~~Dv~   78 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRD-RNYRVVAT-SRSIK--PSA-------DP-------------------DIHTVAGDIS   78 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEE-ESSCC--CCS-------ST-------------------TEEEEESCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-eCChh--hcc-------cC-------------------ceEEEEccCC
Confidence            4689999999999999998875 57887754 33210  000       00                   111 345678


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus        79 d~~~v~~~~~~~~~~~g~iD~lv~nAg  105 (260)
T 3un1_A           79 KPETADRIVREGIERFGRIDSLVNNAG  105 (260)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            887777777666554  6788776654

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=94.13  E-value=0.16  Score=45.11  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |++|.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   32 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLE-KGYEVHGIK   32 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEE
Confidence            57899999999999999998875 478877653

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.11  E-value=0.079  Score=47.66  Aligned_cols=72  Identities=17%  Similarity=0.099  Sum_probs=42.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---cCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~---~dl~~~l~~~~~~~~~DVvID  112 (257)
                      |||+|+|++|.+|+.++..+....-..-+..+|....-..+.++.....+..+..+   +|+++++.      ++|+||-
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~------~aDvVvi   74 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLK------GCDVVVI   74 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHT------TCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhC------CCCEEEE
Confidence            69999998899999999887754322224467754210111122211111123332   57888774      7998885


Q ss_pred             c
Q 025154          113 F  113 (257)
Q Consensus       113 F  113 (257)
                      .
T Consensus        75 ~   75 (314)
T 1mld_A           75 P   75 (314)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.10  E-value=0.47  Score=41.90  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=27.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      +++|.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   41 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQT-MGATVKGYSL   41 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCCchHHHHHHHHHHh-CCCeEEEEeC
Confidence            36899999999999999998875 4788877553

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=94.08  E-value=0.075  Score=47.99  Aligned_cols=65  Identities=15%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ..+|+|+| .|+||+.+++.+. .-++++. ++|+ ... ..  ...    ..|+...+++++++.      .+|+|+..
T Consensus       146 g~~vgIIG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~~-~~--~~~----~~g~~~~~~l~ell~------~aDvVil~  209 (320)
T 1gdh_A          146 NKTLGIYG-FGSIGQALAKRAQ-GFDMDID-YFDTHRAS-SS--DEA----SYQATFHDSLDSLLS------VSQFFSLN  209 (320)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSCCC-HH--HHH----HHTCEECSSHHHHHH------HCSEEEEC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCcC-hh--hhh----hcCcEEcCCHHHHHh------hCCEEEEe
Confidence            46899999 5999999999877 4578876 4665 421 11  111    234555558999885      69998876


Q ss_pred             CC
Q 025154          114 TD  115 (257)
Q Consensus       114 T~  115 (257)
                      ..
T Consensus       210 ~p  211 (320)
T 1gdh_A          210 AP  211 (320)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=93.97  E-value=0.25  Score=42.86  Aligned_cols=82  Identities=11%  Similarity=0.108  Sum_probs=47.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.               +.+..   ..++. +..|.+
T Consensus        30 k~vlVTGas~gIG~aia~~L~~-~G~~V~~-~~r~~--~~~~~~~---------------~~l~~---~~~~~~~~~Dv~   87 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLLE-AGARVFI-CARDA--EACADTA---------------TRLSA---YGDCQAIPADLS   87 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHH---------------HHHTT---SSCEEECCCCTT
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHHHh---cCceEEEEeeCC
Confidence            4799999999999999998875 5788664 44321  1111110               11110   00111 124677


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (276)
T 2b4q_A           88 SEAGARRLAQALGELSARLDILVNNAG  114 (276)
T ss_dssp             SHHHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            777777766665543  5777776554

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=93.95  E-value=0.21  Score=43.32  Aligned_cols=30  Identities=33%  Similarity=0.506  Sum_probs=25.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      |||.|+|++|.+|+.+++.+.+ .+.++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~   30 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVL   30 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH-CCCEEEEE
Confidence            5899999999999999998875 57887764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=93.93  E-value=0.19  Score=43.81  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=26.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .++|.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~   34 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLE-KGYEVYGAD   34 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEE
Confidence            36899999999999999998875 478887654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.83  E-value=0.32  Score=42.36  Aligned_cols=83  Identities=19%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      ..+.|+|++|.+|+.+++.+.+ .+..++. +++..  ....++.               +.+..  ....+. +..|.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~---------------~~l~~--~~~~~~~~~~Dv~   87 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAA-DGVTVGA-LGRTR--TEVEEVA---------------DEIVG--AGGQAIALEADVS   87 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHHH---------------HHHTT--TTCCEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHHHh--cCCcEEEEEccCC
Confidence            3689999999999999998875 5777765 34321  1111110               11110  001111 345788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+++=..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A           88 DELQMRNAVRDLVLKFGHLDIVVANAG  114 (283)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            888887777766554  6888875544

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=93.78  E-value=0.09  Score=49.61  Aligned_cols=37  Identities=14%  Similarity=0.140  Sum_probs=30.4

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ...|++|.|+|++|.+|+.+++.+ ...+.++++....
T Consensus       147 ~~~~~~VLVTGatG~iG~~l~~~L-~~~g~~V~~l~R~  183 (508)
T 4f6l_B          147 HRPLGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRA  183 (508)
T ss_dssp             BCCCEEEEESCTTSHHHHHHHHHT-BTTEEEEEEEEES
T ss_pred             cCCCCeEEEECCccchHHHHHHHH-HhcCCEEEEEECC
Confidence            345789999999999999999988 4668888877543

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=93.76  E-value=0.075  Score=48.19  Aligned_cols=66  Identities=17%  Similarity=0.127  Sum_probs=44.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ..++|+|+| +|+||+.+++.+.. -++++. ++|+... .+  ...    ..|+. +.++++++.      .+|+|+..
T Consensus       149 ~g~~vgIIG-~G~iG~~iA~~l~~-~G~~V~-~~d~~~~-~~--~~~----~~g~~-~~~l~~~l~------~aDvVil~  211 (334)
T 2dbq_A          149 YGKTIGIIG-LGRIGQAIAKRAKG-FNMRIL-YYSRTRK-EE--VER----ELNAE-FKPLEDLLR------ESDFVVLA  211 (334)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSCC-HH--HHH----HHCCE-ECCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHh-CCCEEE-EECCCcc-hh--hHh----hcCcc-cCCHHHHHh------hCCEEEEC
Confidence            346899999 59999999998874 578865 4665321 11  111    12343 358888885      69999877


Q ss_pred             CCh
Q 025154          114 TDA  116 (257)
Q Consensus       114 T~p  116 (257)
                      ..+
T Consensus       212 vp~  214 (334)
T 2dbq_A          212 VPL  214 (334)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            643

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=93.76  E-value=0.22  Score=45.68  Aligned_cols=36  Identities=14%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..|++|.|+|++|.+|+.+++.+ ...+.++++...+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~R~  102 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRA  102 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHH-TTTEEEEEEEEEC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHH-HcCCCEEEEEECC
Confidence            44679999999999999999988 4568888876643

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=93.74  E-value=0.15  Score=51.20  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=27.0

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +..+.||+|+|+ |.||..++..++ ..+++++ ++|.
T Consensus       309 ~~~~~kV~VIGa-G~MG~~iA~~la-~aG~~V~-l~D~  343 (725)
T 2wtb_A          309 PRKIKKVAIIGG-GLMGSGIATALI-LSNYPVI-LKEV  343 (725)
T ss_dssp             CCCCCCEEEECC-SHHHHHHHHHHH-TTTCCEE-EECS
T ss_pred             cccCcEEEEEcC-CHhhHHHHHHHH-hCCCEEE-EEEC
Confidence            344679999995 999999999876 4578765 4564

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=93.74  E-value=0.043  Score=50.44  Aligned_cols=64  Identities=16%  Similarity=0.030  Sum_probs=44.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| +|+||+.+++.+. .-++++++ +|+..   ......    ..|+...+++++++.      .+|+|+-..
T Consensus       160 g~tvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~d~~~---~~~~~~----~~g~~~~~~l~ell~------~aDiV~l~~  223 (352)
T 3gg9_A          160 GQTLGIFG-YGKIGQLVAGYGR-AFGMNVLV-WGREN---SKERAR----ADGFAVAESKDALFE------QSDVLSVHL  223 (352)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSHH---HHHHHH----HTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-ECHHHHHHHHHHH-hCCCEEEE-ECCCC---CHHHHH----hcCceEeCCHHHHHh------hCCEEEEec
Confidence            46999999 6999999999876 45888775 56421   111111    245666679999996      689988654

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=93.74  E-value=0.43  Score=39.96  Aligned_cols=84  Identities=19%  Similarity=0.258  Sum_probs=53.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC---HHHHHhccccCCCcc-E
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQSKARA-V  109 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d---l~~~l~~~~~~~~~D-V  109 (257)
                      .|.|+.|+|| |..|+.+++.+.+ .++++++.+|.....   ..      -.|++++..   ++++.+     ...| +
T Consensus        11 ~~k~v~IiGA-Gg~g~~v~~~l~~-~~~~~vgfiDd~~~~---~~------~~g~~Vlg~~~~~~~~~~-----~~~~~v   74 (220)
T 4ea9_A           11 AIGGVVIIGG-GGHAKVVIESLRA-CGETVAAIVDADPTR---RA------VLGVPVVGDDLALPMLRE-----QGLSRL   74 (220)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHH-TTCCEEEEECSCC------C------BTTBCEEESGGGHHHHHH-----TTCCEE
T ss_pred             CCCCEEEEcC-CHHHHHHHHHHHh-CCCEEEEEEeCCccc---Cc------CCCeeEECCHHHHHHhhc-----ccccEE
Confidence            3558999997 9999999998875 789999999954211   11      236677543   444443     2344 4


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCe
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRS  133 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~v  133 (257)
                      +|=...+..-.+..+.+.+.|..+
T Consensus        75 ~iAIg~~~~R~~i~~~l~~~g~~~   98 (220)
T 4ea9_A           75 FVAIGDNRLRQKLGRKARDHGFSL   98 (220)
T ss_dssp             EECCCCHHHHHHHHHHHHHTTCEE
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCc
Confidence            442234555667777777777543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=93.73  E-value=0.81  Score=39.47  Aligned_cols=83  Identities=14%  Similarity=0.120  Sum_probs=49.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.               +.+..  ...++. +..|++
T Consensus        45 k~vlITGasggIG~~la~~L~~-~G~~V~~-~~r~~--~~~~~~~---------------~~l~~--~~~~~~~~~~Dl~  103 (285)
T 2c07_A           45 KVALVTGAGRGIGREIAKMLAK-SVSHVIC-ISRTQ--KSCDSVV---------------DEIKS--FGYESSGYAGDVS  103 (285)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-TSSEEEE-EESSH--HHHHHHH---------------HHHHT--TTCCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-cCCEEEE-EcCCH--HHHHHHH---------------HHHHh--cCCceeEEECCCC
Confidence            4799999999999999998874 5788876 55321  1111110               11110  001122 345788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus       104 d~~~v~~~~~~~~~~~~~id~li~~Ag  130 (285)
T 2c07_A          104 KKEEISEVINKILTEHKNVDILVNNAG  130 (285)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            888777776655442  5788776654

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=93.67  E-value=0.056  Score=48.85  Aligned_cols=97  Identities=12%  Similarity=0.101  Sum_probs=56.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCc------EEEEEEecC----C---CCcchhhhhcC--CCCCCeeeecCHHHHH
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSH----S---VGEDIGMVCDM--EQPLEIPVMSDLTMVL   98 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~------eLvg~vd~~----~---~g~d~g~~~g~--~~~~gv~v~~dl~~~l   98 (257)
                      .+|||+|+||+|.+|+.++..+....-+      +|+. +|..    .   .| .+.++...  ....++..++++.+.+
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l-~Di~~~~~~~~~~g-~~~dl~~~~~~~~~~i~~~~~~~~al   81 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQL-LEIPNEKAQKALQG-VMMEIDDCAFPLLAGMTAHADPMTAF   81 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEE-ECCSCHHHHHHHHH-HHHHHHTTTCTTEEEEEEESSHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEE-EcCCCccccccchh-hHHHHhhhcccccCcEEEecCcHHHh
Confidence            3589999998899999999888764322      6665 7753    1   01 01112110  0012345567888888


Q ss_pred             hccccCCCccEEEEcCC----h------------HhHHHHHHHHHHcC-CC-eEEeCC
Q 025154           99 GSISQSKARAVVIDFTD----A------------STVYDNVKQATAFG-MR-SVVYVP  138 (257)
Q Consensus        99 ~~~~~~~~~DVvIDFT~----p------------~~~~~~~~~a~~~G-i~-vViGTT  138 (257)
                      .      ++|+||-...    |            ....+.++.+.+++ .. .|+=.|
T Consensus        82 ~------~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S  133 (329)
T 1b8p_A           82 K------DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG  133 (329)
T ss_dssp             T------TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             C------CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            4      7998885431    1            12345666777774 44 444444

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=93.64  E-value=0.079  Score=48.04  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=27.3

Q ss_pred             CCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .+...++||+|+|+ |.+|..++-.+...+-+.=+..+|.
T Consensus         4 ~~~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di   42 (326)
T 2zqz_A            4 ITDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             --CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             cccCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            34555689999997 9999999988776553333445674

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=93.64  E-value=0.093  Score=47.10  Aligned_cols=64  Identities=22%  Similarity=0.170  Sum_probs=43.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| .|+||+.+++.+. .-++++. ++|+... .  ....    ..|+.. .++++++.      .+|+|+...
T Consensus       142 g~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~-~--~~~~----~~g~~~-~~l~ell~------~aDvV~l~~  204 (307)
T 1wwk_A          142 GKTIGIIG-FGRIGYQVAKIAN-ALGMNIL-LYDPYPN-E--ERAK----EVNGKF-VDLETLLK------ESDVVTIHV  204 (307)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-H--HHHH----HTTCEE-CCHHHHHH------HCSEEEECC
T ss_pred             CceEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCCC-h--hhHh----hcCccc-cCHHHHHh------hCCEEEEec
Confidence            46899999 5999999999876 4578876 4665321 1  1111    234443 47888885      699988765


Q ss_pred             C
Q 025154          115 D  115 (257)
Q Consensus       115 ~  115 (257)
                      .
T Consensus       205 p  205 (307)
T 1wwk_A          205 P  205 (307)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=93.56  E-value=0.35  Score=47.98  Aligned_cols=95  Identities=13%  Similarity=0.136  Sum_probs=59.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC------------CCcchh---------hhhcCCCCCCeee--e-
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------------VGEDIG---------MVCDMEQPLEIPV--M-   91 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------------~g~d~g---------~~~g~~~~~gv~v--~-   91 (257)
                      .||+|+|+ |..|..+++.++. .|+.=+.++|...            ...|+|         .+..+  ..++.+  + 
T Consensus        18 s~VlVVGa-GGLGsevak~La~-aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~i--NP~v~V~a~~   93 (640)
T 1y8q_B           18 GRVLVVGA-GGIGCELLKNLVL-TGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQF--YPKANIVAYH   93 (640)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTT--CTTCEEEEEE
T ss_pred             CeEEEECc-CHHHHHHHHHHHH-cCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHH--CCCCeEEEEe
Confidence            58999996 9999999999874 4666666777321            011211         01111  122322  1 


Q ss_pred             cCH------HHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEe-CCCC
Q 025154           92 SDL------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVY-VPHI  140 (257)
Q Consensus        92 ~dl------~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViG-TTG~  140 (257)
                      ..+      ++.+.      .+|+|||.+ .+++-...-..|.++++|+|.+ +.|+
T Consensus        94 ~~i~~~~~~~~~~~------~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~  144 (640)
T 1y8q_B           94 DSIMNPDYNVEFFR------QFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGY  144 (640)
T ss_dssp             SCTTSTTSCHHHHT------TCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             cccchhhhhHhhhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence            122      34553      799999997 4566666778899999999954 4454

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.53  E-value=0.12  Score=42.15  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=24.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      -+|.|+|++|.+|+.+++.+.. .+.++++.
T Consensus        40 ~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~~   69 (198)
T 1pqw_A           40 ERVLIHSATGGVGMAAVSIAKM-IGARIYTT   69 (198)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-HTCEEEEE
T ss_pred             CEEEEeeCCChHHHHHHHHHHH-cCCEEEEE
Confidence            4799999999999999987764 46776653

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=93.52  E-value=0.78  Score=40.51  Aligned_cols=114  Identities=20%  Similarity=0.169  Sum_probs=52.1

Q ss_pred             cccccccccCccccccCCCCCC--CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee
Q 025154           13 HHISQNVKAKRFISCSTNPPQS--NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (257)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~--~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v   90 (257)
                      ||+.-..+-+++..+...++..  ...+.|+|++|.+|+.+++.+++ .+.+++.. ++.. +.+...         ..-
T Consensus         3 ~~~~~~~~~~~~~~~~p~~m~~l~gk~vlVTGas~GIG~aia~~la~-~G~~Vv~~-~r~~-~~~~~~---------~~~   70 (322)
T 3qlj_A            3 HHHHHHMGTLEAQTQGPGSMGVVDGRVVIVTGAGGGIGRAHALAFAA-EGARVVVN-DIGV-GLDGSP---------ASG   70 (322)
T ss_dssp             -------------------CCTTTTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEE-CCCB-CTTSSB---------TCT
T ss_pred             cccccccceeeeeccCCchhcccCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEE-eCcc-cccccc---------ccc
Confidence            4444444445555555333321  23688999999999999998875 57877643 3210 000000         000


Q ss_pred             ecCHHHHHhccccCCCccE---EEEcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154           91 MSDLTMVLGSISQSKARAV---VIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DV---vIDFT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .+.++++.+++. ....++   ..|.+.++...+.+..+.+.  ++.+|+=..|
T Consensus        71 ~~~~~~~~~~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A           71 GSAAQSVVDEIT-AAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             TSHHHHHHHHHH-HTTCEEEEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             HHHHHHHHHHHH-hcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            001111111100 012232   34778888888877777665  7888886655

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=93.52  E-value=0.098  Score=46.81  Aligned_cols=60  Identities=18%  Similarity=0.076  Sum_probs=42.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| .|+||+.+++.+.. -++++.+ +|+..  ...         ..+...+++++++.      .+|+|+-..
T Consensus       122 g~tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~dr~~--~~~---------~~~~~~~~l~ell~------~aDiV~l~~  181 (290)
T 3gvx_A          122 GKALGILG-YGGIGRRVAHLAKA-FGMRVIA-YTRSS--VDQ---------NVDVISESPADLFR------QSDFVLIAI  181 (290)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHH-HTCEEEE-ECSSC--CCT---------TCSEECSSHHHHHH------HCSEEEECC
T ss_pred             cchheeec-cCchhHHHHHHHHh-hCcEEEE-Eeccc--ccc---------ccccccCChHHHhh------ccCeEEEEe
Confidence            46999999 59999999998874 5888775 56431  110         11334568999986      689888654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.47  E-value=0.069  Score=48.33  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||+|+|+ |.||..++..+...+-..=+..+|.
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~   33 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDI   33 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            69999996 9999999988876543323345774

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=93.42  E-value=0.32  Score=42.62  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=25.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      |||.|+|++|.+|+.+++.+.+ .+.++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~   30 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVIIL   30 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            5899999999999999998875 57888764

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=93.41  E-value=0.14  Score=46.11  Aligned_cols=90  Identities=12%  Similarity=0.013  Sum_probs=56.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g-~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .+|+|+| +|.||+.+++.+......+-+.++++. ..+... ++... ....+.+. |+++++.      ++|+||-.|
T Consensus       122 ~~v~iIG-aG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~-~g~~~~~~-~~~eav~------~aDIVi~aT  191 (313)
T 3hdj_A          122 SVLGLFG-AGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRR-CGVPARMA-APADIAA------QADIVVTAT  191 (313)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHH-HTSCEEEC-CHHHHHH------HCSEEEECC
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHh-cCCeEEEe-CHHHHHh------hCCEEEEcc
Confidence            5899999 599999999998875557777788875 222221 11100 01123445 9999986      699999777


Q ss_pred             ChHhHHHHH-HHHHHcCCCeE-EeC
Q 025154          115 DASTVYDNV-KQATAFGMRSV-VYV  137 (257)
Q Consensus       115 ~p~~~~~~~-~~a~~~Gi~vV-iGT  137 (257)
                      ....  ..+ ...++.|.+++ +|+
T Consensus       192 ~s~~--pvl~~~~l~~G~~V~~vGs  214 (313)
T 3hdj_A          192 RSTT--PLFAGQALRAGAFVGAIGS  214 (313)
T ss_dssp             CCSS--CSSCGGGCCTTCEEEECCC
T ss_pred             CCCC--cccCHHHcCCCcEEEECCC
Confidence            4321  111 22356777776 454

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=93.39  E-value=0.26  Score=46.90  Aligned_cols=125  Identities=13%  Similarity=0.194  Sum_probs=75.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCc----chhhhhcCCCC-----------CCeeeecCH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE----DIGMVCDMEQP-----------LEIPVMSDL   94 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~----d~g~~~g~~~~-----------~gv~v~~dl   94 (257)
                      ..+|+|.| .|.||+..++.+.+ .+.+||++.|+.     ..|-    |+..+......           ++....+ .
T Consensus       230 g~~v~VqG-~GnVG~~~a~~L~~-~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~-~  306 (449)
T 1bgv_A          230 GKTVALAG-FGNVAWGAAKKLAE-LGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP-G  306 (449)
T ss_dssp             TCEEEECC-SSHHHHHHHHHHHH-HTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE-T
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeC-c
Confidence            36899999 59999999987764 589999999942     2243    22222211000           0112111 2


Q ss_pred             HHHHhccccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEE--EccCchHHH
Q 025154           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCL--IAPTLSIGS  169 (257)
Q Consensus        95 ~~~l~~~~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl--~spNfSlGv  169 (257)
                      ++++.     .++||++-+..+... .+++.....+|+.+|++--  .++++..   +.+.++.|+-++  +..|=. ||
T Consensus       307 ~e~~~-----~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~---~~l~~~~Gi~~~PD~~aNaG-GV  377 (449)
T 1bgv_A          307 EKPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL---RFLMQQPNMVVAPSKAVNAG-GV  377 (449)
T ss_dssp             CCGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH---HHHHHCTTCEEECHHHHTTH-HH
T ss_pred             hhhhc-----CCcceeeccccccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH---HHHHHcCCEEEEChHHhcCC-Cc
Confidence            34554     489999987765444 6788888889999999865  4566543   333333254444  334433 66


Q ss_pred             HH
Q 025154          170 IL  171 (257)
Q Consensus       170 nl  171 (257)
                      ..
T Consensus       378 ~~  379 (449)
T 1bgv_A          378 LV  379 (449)
T ss_dssp             HH
T ss_pred             ee
Confidence            54

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.37  E-value=0.39  Score=42.78  Aligned_cols=71  Identities=15%  Similarity=0.096  Sum_probs=42.7

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCCCcch--hhhhc----CCCCCCeeeecCHHHHHhccccCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDI--GMVCD----MEQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~--g~~~g----~~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      .++||+|+|+ |.||..++..+... ++ + +..+|....-.+.  -++..    ......+..++|+ +.+.      +
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~-g~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~------~   72 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKD-NLAD-VVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADIS------G   72 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHH-TCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT------T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCce-EEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhC------C
Confidence            3579999997 99999999988754 55 7 5667753210000  00000    0002245556787 5553      7


Q ss_pred             ccEEEEcC
Q 025154          107 RAVVIDFT  114 (257)
Q Consensus       107 ~DVvIDFT  114 (257)
                      +|+||...
T Consensus        73 aDiVi~av   80 (317)
T 2ewd_A           73 SDVVIITA   80 (317)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEeC
Confidence            99988765

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=93.36  E-value=0.37  Score=42.20  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=27.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      +.+|.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus         5 ~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r   37 (337)
T 2c29_D            5 SETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR   37 (337)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEC
Confidence            46899999999999999998875 5788887654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=93.33  E-value=0.13  Score=51.44  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=27.0

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +...+||+|+|+ |.||..++..++. .+++++ ++|.
T Consensus       311 ~~~i~kV~VIGa-G~MG~~iA~~la~-aG~~V~-l~D~  345 (715)
T 1wdk_A          311 AKDVKQAAVLGA-GIMGGGIAYQSAS-KGTPIL-MKDI  345 (715)
T ss_dssp             CCCCSSEEEECC-HHHHHHHHHHHHH-TTCCEE-EECS
T ss_pred             cccCCEEEEECC-ChhhHHHHHHHHh-CCCEEE-EEEC
Confidence            344678999995 9999999998774 578766 4664

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=93.33  E-value=0.82  Score=39.08  Aligned_cols=83  Identities=14%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvI  111 (257)
                      +.+|.|+|++|.+|+.+++.+.+ .+.+++...++..  .....+               .+.+.+    ...+   +..
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~-~G~~V~~~~~~~~--~~~~~~---------------~~~~~~----~~~~~~~~~~   83 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAAR-QGWRVGVNYAANR--EAADAV---------------VAAITE----SGGEAVAIPG   83 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTCEEEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCCh--hHHHHH---------------HHHHHh----cCCcEEEEEc
Confidence            34689999999999999998875 5788765544321  111111               111111    1222   345


Q ss_pred             EcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.+.++.....+..+.+.  ++.+|+=..|
T Consensus        84 Dl~~~~~v~~~~~~~~~~~g~id~li~nAg  113 (272)
T 4e3z_A           84 DVGNAADIAAMFSAVDRQFGRLDGLVNNAG  113 (272)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            788888888777776654  7888876655

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.30  E-value=0.13  Score=47.10  Aligned_cols=70  Identities=21%  Similarity=0.249  Sum_probs=43.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCC---CC--cchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~---~g--~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (257)
                      ++||+|+|++|.+|+.++..+....- -+| ..+|...   .|  .|+.... . ....+.+++|+.+.+.      ++|
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~ev-vLiDi~~~k~~g~a~DL~~~~-~-~~~~i~~t~d~~~al~------dAD   78 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNL-CLYDPFAVGLEGVAEEIRHCG-F-EGLNLTFTSDIKEALT------DAK   78 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCE-EEECSCHHHHHHHHHHHHHHC-C-TTCCCEEESCHHHHHT------TEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEE-EEEeCCchhHHHHHHhhhhCc-C-CCCceEEcCCHHHHhC------CCC
Confidence            57999999779999999977665432 244 3567431   11  1121111 1 1234556788888774      799


Q ss_pred             EEEEc
Q 025154          109 VVIDF  113 (257)
Q Consensus       109 VvIDF  113 (257)
                      +||-.
T Consensus        79 vVvit   83 (343)
T 3fi9_A           79 YIVSS   83 (343)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            88854

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.29  E-value=0.37  Score=43.81  Aligned_cols=74  Identities=16%  Similarity=0.145  Sum_probs=41.6

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeecCHHHHHhccccCCC
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      ...++||+|+|+ |.||..++..+....-..=+..+|...   .|  .|............+...+|+++ +      .+
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~------~~   87 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-T------AN   87 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-G------TT
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-h------CC
Confidence            455789999997 999999998877554322234577431   11  11221111101122334567775 4      37


Q ss_pred             ccEEEEc
Q 025154          107 RAVVIDF  113 (257)
Q Consensus       107 ~DVvIDF  113 (257)
                      +|+||-.
T Consensus        88 aDiVvi~   94 (331)
T 4aj2_A           88 SKLVIIT   94 (331)
T ss_dssp             EEEEEEC
T ss_pred             CCEEEEc
Confidence            9988754

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=93.29  E-value=0.34  Score=45.00  Aligned_cols=116  Identities=14%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-Ceee-ecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPV-MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ++||+|+|+ |.-...+++.+.+..+++.+.+.... .+.  ..+.    .. -+.+ +.|.+++++ +++..++|+|+-
T Consensus        24 ~~~IlIlG~-g~r~~al~~~~a~~~g~~~v~~~~~~-~~~--~~~~----~~~~~~~~~~d~~~l~~-~~~~~~~d~V~~   94 (452)
T 2qk4_A           24 AARVLIIGS-GGREHTLAWKLAQSHHVKQVLVAPGN-AGT--ACSE----KISNTAISISDHTALAQ-FCKEKKIEFVVV   94 (452)
T ss_dssp             SEEEEEEEC-SHHHHHHHHHHTTCTTEEEEEEEECC-GGG--SBSS----SEEECCCCSSCHHHHHH-HHHHHTCCEEEE
T ss_pred             CcEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCC-hhh--hhhc----cccccccCCCCHHHHHH-HHHHcCCCEEEE
Confidence            479999996 63223455556667788765544321 111  1111    10 1111 456666553 223347898774


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC--CCCH-HHHHHHHHHhhhcCceEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP--HIQL-ETVSALSAFCDKASMGCL  160 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT--G~s~-e~~~~L~~~a~~~gipvl  160 (257)
                      .+-.......+..+.+.|++++ |.+  .... .+....++++++.|+|+.
T Consensus        95 ~~E~~~~~~~~~~l~~~gi~~~-g~~~~~~~~~~dK~~~k~~l~~~gip~p  144 (452)
T 2qk4_A           95 GPEAPLAAGIVGNLRSAGVQCF-GPTAEAAQLESSKRFAKEFMDRHGIPTA  144 (452)
T ss_dssp             CSSHHHHTTHHHHHHHTTCCEE-SCCTTTTHHHHBHHHHHHHHHHTTCCBC
T ss_pred             CCcHHHHHHHHHHHHhcCCcEe-CcCHHHHHHhcCHHHHHHHHHHCCCCCC
Confidence            3321112245556667899976 443  2211 223346677788887753

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=93.27  E-value=0.35  Score=45.14  Aligned_cols=93  Identities=15%  Similarity=0.165  Sum_probs=58.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEe-cCCCCcchhhhhcCC---CCC-------------Ceeee---cC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID-SHSVGEDIGMVCDME---QPL-------------EIPVM---SD   93 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd-~~~~g~d~g~~~g~~---~~~-------------gv~v~---~d   93 (257)
                      |.||.|.|+||-+|+.....+.+.|+ +++++... ...    +..+....   .+.             ++.++   +.
T Consensus        21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~n----v~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~   96 (398)
T 2y1e_A           21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAH----LDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDA   96 (398)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSC----HHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTH
T ss_pred             ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCC----HHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHH
Confidence            67899999999999999999998876 99999887 321    11111000   010             11111   11


Q ss_pred             HHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus        94 l~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      +.++..    ..++|+|+-.-.-.+-+.-...|++.|+.+-.
T Consensus        97 l~~~a~----~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaL  134 (398)
T 2y1e_A           97 ATRLVE----QTEADVVLNALVGALGLRPTLAALKTGARLAL  134 (398)
T ss_dssp             HHHHHH----HSCCSEEEECCCSGGGHHHHHHHHHHTCEEEE
T ss_pred             HHHHhc----CCCCCEEEEeCcCHHHHHHHHHHHHCCCceEE
Confidence            223332    24689888766655556666677888888766

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=93.15  E-value=0.24  Score=44.82  Aligned_cols=94  Identities=15%  Similarity=0.145  Sum_probs=52.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--e--ecCHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--V--MSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v--~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      -+|.|+|++|.+|...++++....+.++++...+.   ... +++   .++|..  +  .+++.+.+.++ ....+|++|
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~---~~~-~~~---~~lGad~vi~~~~~~~~~v~~~-~~~g~Dvvi  244 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRP---ETQ-EWV---KSLGAHHVIDHSKPLAAEVAAL-GLGAPAFVF  244 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSH---HHH-HHH---HHTTCSEEECTTSCHHHHHHTT-CSCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCH---HHH-HHH---HHcCCCEEEeCCCCHHHHHHHh-cCCCceEEE
Confidence            47999998899999999877654678877654321   011 111   012221  1  12344433322 223699999


Q ss_pred             EcCChHhHHHHHHHHH-HcCCCeEEeC
Q 025154          112 DFTDASTVYDNVKQAT-AFGMRSVVYV  137 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~-~~Gi~vViGT  137 (257)
                      |++-.....+.+..++ ..|.=+++|.
T Consensus       245 d~~g~~~~~~~~~~~l~~~G~iv~~g~  271 (363)
T 4dvj_A          245 STTHTDKHAAEIADLIAPQGRFCLIDD  271 (363)
T ss_dssp             ECSCHHHHHHHHHHHSCTTCEEEECSC
T ss_pred             ECCCchhhHHHHHHHhcCCCEEEEECC
Confidence            9987554544444444 4454444544

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.04  E-value=0.51  Score=43.01  Aligned_cols=72  Identities=18%  Similarity=0.163  Sum_probs=41.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (257)
                      .++||+|+|+ |.||..++..++...-+.=+..+|...   .|  .|+...........+..++|+++ +      .++|
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~------~daD   91 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-S------AGSK   91 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-C------SSCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-h------CCCC
Confidence            4689999997 999999998887654332234567421   11  11111111101123444667776 5      3799


Q ss_pred             EEEEc
Q 025154          109 VVIDF  113 (257)
Q Consensus       109 VvIDF  113 (257)
                      +||-.
T Consensus        92 iVIit   96 (330)
T 3ldh_A           92 LVVIT   96 (330)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            98854

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.03  E-value=1.2  Score=38.63  Aligned_cols=85  Identities=20%  Similarity=0.203  Sum_probs=51.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      ..+.|.|++|.+|+.+++.+++ .+.+++....+..  ....++.              +++-..   ...+. +..|.+
T Consensus        30 k~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dv~   89 (280)
T 4da9_A           30 PVAIVTGGRRGIGLGIARALAA-SGFDIAITGIGDA--EGVAPVI--------------AELSGL---GARVIFLRADLA   89 (280)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCeEEEEeCCCH--HHHHHHH--------------HHHHhc---CCcEEEEEecCC
Confidence            3589999999999999998875 5788765432210  1111110              111110   01222 345788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      .++...+.+..+.+.  ++.+|+=..|.
T Consensus        90 d~~~v~~~~~~~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A           90 DLSSHQATVDAVVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             SGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888888877777665  78888766654

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A

Probab=92.98  E-value=0.17  Score=47.11  Aligned_cols=115  Identities=13%  Similarity=0.098  Sum_probs=59.2

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      +||||.|+|. |.=-.+++..+.+++++.-+.+... ..|.  ..+..   ...+.+ +.|++.+++ +++..++|++|-
T Consensus         2 ~~mkvlviG~-ggre~ala~~l~~s~~v~~v~~~pg-n~g~--~~~~~---~~~~~~~~~d~~~l~~-~a~~~~id~vv~   73 (431)
T 3mjf_A            2 NAMNILIIGN-GGREHALGWKAAQSPLADKIYVAPG-NAGT--ALEPT---LENVDIAATDIAGLLA-FAQSHDIGLTIV   73 (431)
T ss_dssp             -CEEEEEEEC-SHHHHHHHHHHTTCTTEEEEEEEEC-CHHH--HHCTT---CEECCCCTTCHHHHHH-HHHHTTEEEEEE
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHhCCCCCEEEEECC-CHHH--hhhcc---cceecCCcCCHHHHHH-HHHHhCcCEEEE
Confidence            4799999994 7444467777777877654433331 1111  11110   001222 346666543 233357887764


Q ss_pred             cCChHh--HHHHHHHHHHcCCCeEEeCCC--CC-HHHHHHHHHHhhhcCceE
Q 025154          113 FTDAST--VYDNVKQATAFGMRSVVYVPH--IQ-LETVSALSAFCDKASMGC  159 (257)
Q Consensus       113 FT~p~~--~~~~~~~a~~~Gi~vViGTTG--~s-~e~~~~L~~~a~~~gipv  159 (257)
                      .  |+.  ....+..+.+.|+|++ |.+-  .. .......++++++.|+|+
T Consensus        74 g--~e~~l~~~~~~~l~~~Gi~~~-Gp~~~a~~~~~dK~~~k~~l~~~GIpt  122 (431)
T 3mjf_A           74 G--PEAPLVIGVVDAFRAAGLAIF-GPTQAAAQLEGSKAFTKDFLARHNIPS  122 (431)
T ss_dssp             C--SHHHHHTTHHHHHHHTTCCEE-SCCHHHHHHHHCHHHHHHHHHHTTCSB
T ss_pred             C--CchHHHHHHHHHHHhcCCCee-CCCHHHHHHhhCHHHHHHHHHHcCCCC
Confidence            3  333  2356666778899976 4431  00 011223455666666664

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=92.97  E-value=0.84  Score=40.05  Aligned_cols=84  Identities=23%  Similarity=0.338  Sum_probs=50.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+++ .+.+++.. ++..  ....++               .+.+.+.. ...+. +..|.+
T Consensus        42 k~vlVTGas~GIG~aia~~la~-~G~~V~~~-~r~~--~~~~~~---------------~~~l~~~~-~~~~~~~~~Dv~  101 (293)
T 3rih_A           42 RSVLVTGGTKGIGRGIATVFAR-AGANVAVA-ARSP--RELSSV---------------TAELGELG-AGNVIGVRLDVS  101 (293)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEE-ESSG--GGGHHH---------------HHHHTTSS-SSCEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE-ECCH--HHHHHH---------------HHHHHhhC-CCcEEEEEEeCC
Confidence            3689999999999999998875 57777653 4321  111111               11111000 00122 346888


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+=..|
T Consensus       102 d~~~v~~~~~~~~~~~g~iD~lvnnAg  128 (293)
T 3rih_A          102 DPGSCADAARTVVDAFGALDVVCANAG  128 (293)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888888777766554  6788876654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.95  E-value=0.62  Score=44.03  Aligned_cols=164  Identities=13%  Similarity=0.176  Sum_probs=85.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---cCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (257)
                      .|||.|+|+ |++|+.+++.+. ..+.+++ ++|...  ..+..+.   +.+++.+ +   .+++-+.+.  .-.++|++
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~-~~~~~v~-vId~d~--~~~~~~~---~~~~~~~i~Gd~~~~~~L~~A--gi~~ad~~   72 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLV-GENNDIT-IVDKDG--DRLRELQ---DKYDLRVVNGHASHPDVLHEA--GAQDADML   72 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTC-STTEEEE-EEESCH--HHHHHHH---HHSSCEEEESCTTCHHHHHHH--TTTTCSEE
T ss_pred             cCEEEEECC-CHHHHHHHHHHH-HCCCCEE-EEECCH--HHHHHHH---HhcCcEEEEEcCCCHHHHHhc--CCCcCCEE
Confidence            589999996 999999999875 5677776 677531  1111221   1234433 2   233322211  01478998


Q ss_pred             EEcCChHhHH-HHHHHHHH-cCCCeEEeCCCCCHHHHHHHHHHhh--hcCceEEEccCchHHHHHHHHHHHH----hcC-
Q 025154          111 IDFTDASTVY-DNVKQATA-FGMRSVVYVPHIQLETVSALSAFCD--KASMGCLIAPTLSIGSILLQQAAIS----ASF-  181 (257)
Q Consensus       111 IDFT~p~~~~-~~~~~a~~-~Gi~vViGTTG~s~e~~~~L~~~a~--~~gipvl~spNfSlGvnll~~~a~~----l~~-  181 (257)
                      |=.|.-+... -....|.+ ++.+-++.-. .+++..+..+.+-.  .-|+-.+++|-..+.-.+.+.+...    ... 
T Consensus        73 ia~t~~De~Nl~~~~~Ak~~~~~~~~iar~-~~~~~~~~~~~l~~~~~~giD~iIsPe~~~a~~I~~~i~~p~~~~~~~f  151 (461)
T 4g65_A           73 VAVTNTDETNMAACQVAFTLFNTPNRIARI-RSPQYLAQKEALFKSGAIPVDHLIAPEELVTSYIERLIQYPGALQVVSF  151 (461)
T ss_dssp             EECCSCHHHHHHHHHHHHHHHCCSSEEEEC-CCHHHHTTHHHHTTTSSSCCSEEECHHHHHHHHHHHHHTSTTCSEEEEE
T ss_pred             EEEcCChHHHHHHHHHHHHhcCCccceeEe-ccchhhhhhhhhhhcccCCcceeecHHHHHHHHHHHhccCCCeEEEEEe
Confidence            8777544432 22233333 3666565443 23433333333332  3467779988877766554433110    000 


Q ss_pred             CCCCeEEEeccCCCCCCCCCccHHHHHH
Q 025154          182 HYKNVEIVESRPNARVRYMTRTLISMQV  209 (257)
Q Consensus       182 ~~~DiEIiE~HH~~K~DapSGTa~~l~~  209 (257)
                      .+..++++|..=...----+-+..++..
T Consensus       152 ~~g~~~l~e~~v~~~s~l~g~~l~~l~~  179 (461)
T 4g65_A          152 AEEKVSLVAVKAYYGGPLVGNALSALRE  179 (461)
T ss_dssp             TTTTEEEEEEECCTTSSSTTCBHHHHHH
T ss_pred             ccceEEEEEEEecCCCeecCCcHHHHHh
Confidence            1346788877433322223556666653

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=92.94  E-value=1  Score=43.02  Aligned_cols=122  Identities=14%  Similarity=0.085  Sum_probs=67.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHh---cC-CcEEEEEEecCCCC---cc----------------hhhhhcC-C--CCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTK---AR-GMEVAGAIDSHSVG---ED----------------IGMVCDM-E--QPLE   87 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~---~~-~~eLvg~vd~~~~g---~d----------------~g~~~g~-~--~~~g   87 (257)
                      .|.||.|.|+||-+|+.....+.+   .| .+++++........   +.                +.++-.. .  ...+
T Consensus        76 ~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~Nv~lL~eQ~~ef~P~~v~v~d~~~~~~L~~~l~~~~~~~  155 (488)
T 3au8_A           76 KPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCIHDKSVYEELKELVKNIKDYK  155 (488)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSCHHHHHHHHHHHCCSEEEESCGGGTHHHHTGGGGSTTCC
T ss_pred             cceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhhhcCCC
Confidence            466899999999999999998887   44 59999987622100   00                0000000 0  0012


Q ss_pred             eeeecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHH----HHHHHHhhhc-CceEE
Q 025154           88 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKA-SMGCL  160 (257)
Q Consensus        88 v~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~----~~L~~~a~~~-gipvl  160 (257)
                      +.+..-.+.+. ++++..++|+|+-.-.-.+-+.-...|++.|+.+-..    +.|-+    +.+.++++++ |..++
T Consensus       156 ~~v~~G~egl~-e~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~IALA----NKESLV~aG~Lv~~~a~~~~g~~Il  228 (488)
T 3au8_A          156 PIILCGDEGMK-EICSSNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALA----NKESIVSAGFFLKKLLNIHKNAKII  228 (488)
T ss_dssp             CEEEEHHHHHH-HHHHCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEEC----CSHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred             ceEEeCHHHHH-HHhcCCCCCEEEEccccHhHHHHHHHHHHCCCcEEEe----cchhhhhchHHHHHHHHhcCCCeEE
Confidence            22322111111 1122245888887666666667777788888888773    33322    2355566665 55554

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=92.94  E-value=0.18  Score=45.50  Aligned_cols=63  Identities=17%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -++|+|+| +|+||+.+++.+. .-++++.+ +|+..  .....+.      ......++++++.      .+|+|+-..
T Consensus       139 g~tvGIiG-~G~IG~~vA~~l~-~~G~~V~~-~dr~~--~~~~~~~------~~~~~~~l~ell~------~aDiV~l~~  201 (315)
T 3pp8_A          139 EFSVGIMG-AGVLGAKVAESLQ-AWGFPLRC-WSRSR--KSWPGVE------SYVGREELRAFLN------QTRVLINLL  201 (315)
T ss_dssp             TCCEEEEC-CSHHHHHHHHHHH-TTTCCEEE-EESSC--CCCTTCE------EEESHHHHHHHHH------TCSEEEECC
T ss_pred             CCEEEEEe-eCHHHHHHHHHHH-HCCCEEEE-EcCCc--hhhhhhh------hhcccCCHHHHHh------hCCEEEEec
Confidence            46899999 5999999999876 45888875 55431  1111000      0011257888886      799988554

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=92.94  E-value=0.18  Score=45.82  Aligned_cols=63  Identities=17%  Similarity=0.264  Sum_probs=42.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+..  .....+      .+...+.++++++.      .+|+|+-..
T Consensus       140 g~tvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~dr~~--~~~~~~------~~~~~~~~l~ell~------~aDvV~l~l  202 (324)
T 3hg7_A          140 GRTLLILG-TGSIGQHIAHTGK-HFGMKVLG-VSRSG--RERAGF------DQVYQLPALNKMLA------QADVIVSVL  202 (324)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSC--CCCTTC------SEEECGGGHHHHHH------TCSEEEECC
T ss_pred             cceEEEEE-ECHHHHHHHHHHH-hCCCEEEE-EcCCh--HHhhhh------hcccccCCHHHHHh------hCCEEEEeC
Confidence            46899999 6999999999886 45888775 56431  111110      11223568899886      799888554

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.93  E-value=0.69  Score=41.13  Aligned_cols=70  Identities=13%  Similarity=0.127  Sum_probs=41.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcc-hh-hhhcC----CCCCCeeeecCHHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGED-IG-MVCDM----EQPLEIPVMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d-~g-~~~g~----~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (257)
                      |||+|+|+ |.||..++..+... .+.+++ .+|....-.+ .. ++...    .....+..++|+++ +.      ++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~------~aD   71 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TA------NSD   71 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GT------TCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HC------CCC
Confidence            59999997 99999999988764 256655 4664311000 00 11100    01223455678876 53      799


Q ss_pred             EEEEcC
Q 025154          109 VVIDFT  114 (257)
Q Consensus       109 VvIDFT  114 (257)
                      +||...
T Consensus        72 vViiav   77 (310)
T 1guz_A           72 IVIITA   77 (310)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            988765

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.92  E-value=0.36  Score=43.15  Aligned_cols=31  Identities=35%  Similarity=0.331  Sum_probs=25.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      -+|.|+|++|.+|+.+++.+. ..+.++++..
T Consensus       171 ~~vlV~Ga~ggiG~~~~~~a~-~~Ga~V~~~~  201 (347)
T 2hcy_A          171 HWVAISGAAGGLGSLAVQYAK-AMGYRVLGID  201 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCchHHHHHHHHHH-HCCCcEEEEc
Confidence            479999999999999998776 4577877643

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=92.91  E-value=0.18  Score=45.74  Aligned_cols=69  Identities=19%  Similarity=0.138  Sum_probs=40.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCeeeecCHHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~g~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (257)
                      ++||+|+|+ |.||..++..+.. .++ +| ..+|....   |  .|...... ...+..+..++|+ +.+.      ++
T Consensus         7 ~~kI~viGa-G~vG~~~a~~l~~-~~~~~v-~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~------~a   76 (324)
T 3gvi_A            7 RNKIALIGS-GMIGGTLAHLAGL-KELGDV-VLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIE------GA   76 (324)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCCEE-EEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGT------TC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCCeE-EEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHC------CC
Confidence            479999997 9999999987764 455 64 45674320   1  11111100 0012334446777 4553      79


Q ss_pred             cEEEEc
Q 025154          108 AVVIDF  113 (257)
Q Consensus       108 DVvIDF  113 (257)
                      |+||-.
T Consensus        77 DiVIia   82 (324)
T 3gvi_A           77 DVVIVT   82 (324)
T ss_dssp             SEEEEC
T ss_pred             CEEEEc
Confidence            988865

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=92.87  E-value=0.28  Score=44.04  Aligned_cols=60  Identities=22%  Similarity=0.188  Sum_probs=41.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ...+|+|+| +|+||+.+++.+.. -++++. ++|+.....          .  + .+.++++++.      .+|+|+-.
T Consensus       143 ~g~~vgIIG-~G~IG~~~A~~l~~-~G~~V~-~~d~~~~~~----------~--~-~~~~l~ell~------~aDvV~l~  200 (311)
T 2cuk_A          143 QGLTLGLVG-MGRIGQAVAKRALA-FGMRVV-YHARTPKPL----------P--Y-PFLSLEELLK------EADVVSLH  200 (311)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSSCCSS----------S--S-CBCCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEE-ECHHHHHHHHHHHH-CCCEEE-EECCCCccc----------c--c-ccCCHHHHHh------hCCEEEEe
Confidence            346899999 59999999998874 578875 466532100          1  1 2568888885      68998876


Q ss_pred             CC
Q 025154          114 TD  115 (257)
Q Consensus       114 T~  115 (257)
                      ..
T Consensus       201 ~p  202 (311)
T 2cuk_A          201 TP  202 (311)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.85  E-value=0.23  Score=46.37  Aligned_cols=61  Identities=23%  Similarity=0.113  Sum_probs=43.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|||+| +|+||+.+++.+. .-++++. ++|+... ..         ..++....++++++.      .+|+|+-..
T Consensus       145 gktlGiIG-lG~IG~~vA~~l~-~~G~~V~-~~d~~~~-~~---------~~~~~~~~~l~ell~------~aDvV~l~~  205 (404)
T 1sc6_A          145 GKKLGIIG-YGHIGTQLGILAE-SLGMYVY-FYDIENK-LP---------LGNATQVQHLSDLLN------MSDVVSLHV  205 (404)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-CC---------CTTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-ECHHHHHHHHHHH-HCCCEEE-EEcCCch-hc---------cCCceecCCHHHHHh------cCCEEEEcc
Confidence            35899999 6999999999876 4689876 4675311 00         112444568999986      689988654

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=92.84  E-value=0.092  Score=49.58  Aligned_cols=120  Identities=13%  Similarity=0.186  Sum_probs=62.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------CCCcchhhhhcCCCCCC-------eeeecCHHHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------SVGEDIGMVCDMEQPLE-------IPVMSDLTMV   97 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------~~g~d~g~~~g~~~~~g-------v~v~~dl~~~   97 (257)
                      ..||+|.| .|.+|+..++.+. +.+.++|++.|+.          ..|-|..++.......+       .... +.+++
T Consensus       212 g~~vaVqG-~GnVG~~~a~~L~-~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~  288 (421)
T 2yfq_A          212 DAKIAVQG-FGNVGTFTVKNIE-RQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEF  288 (421)
T ss_dssp             GSCEEEEC-CSHHHHHHHHHHH-HTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC----------------
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cccch
Confidence            36899999 5999999999876 4689999999865          12334333221100000       1111 22455


Q ss_pred             HhccccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCch---HHHHH
Q 025154           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IGSIL  171 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfS---lGvnl  171 (257)
                      +.     .++||+|-++.+... .+++.   +.+..+|++.-  .++++-.+.|+    ++|+  ++.|-+.   =||.+
T Consensus       289 ~~-----~~~DIliP~A~~n~i~~~~A~---~l~ak~VvEgAN~P~t~ea~~il~----~~GI--~~~Pd~~aNaGGV~v  354 (421)
T 2yfq_A          289 WT-----KEYDIIVPAALENVITGERAK---TINAKLVCEAANGPTTPEGDKVLT----ERGI--NLTPDILTNSGGVLV  354 (421)
T ss_dssp             -----------CEEECSCSSCSCHHHHT---TCCCSEEECCSSSCSCHHHHHHHH----HHTC--EEECHHHHTTHHHHH
T ss_pred             hc-----CCccEEEEcCCcCcCCcccHH---HcCCeEEEeCCccccCHHHHHHHH----HCCC--EEEChHHHhCCCeEE
Confidence            54     479999998865443 33333   44888888764  34554433343    4444  4545333   26654

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=92.76  E-value=0.12  Score=42.08  Aligned_cols=32  Identities=25%  Similarity=0.328  Sum_probs=27.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +||||.|+|++|.+|+.+++.+.  .+.+++...
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~--~g~~V~~~~   33 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE--KKAEVITAG   33 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT--TTSEEEEEE
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH--CCCeEEEEe
Confidence            45799999999999999999887  588877543

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=92.74  E-value=0.074  Score=48.37  Aligned_cols=34  Identities=26%  Similarity=0.252  Sum_probs=25.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      .++||+|+|+ |.||..++..+....-. +|+ .+|.
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~-l~D~   38 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELV-VIDV   38 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEE-EEec
Confidence            3679999996 99999999988765433 444 5664

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=92.66  E-value=0.081  Score=47.43  Aligned_cols=34  Identities=29%  Similarity=0.310  Sum_probs=25.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||+|+||+|.+|+.++..+....-..-+..+|.
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di   34 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC
Confidence            5999999999999999988876543232445664

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=92.65  E-value=0.55  Score=39.01  Aligned_cols=82  Identities=22%  Similarity=0.295  Sum_probs=50.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc----EEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA----VVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D----VvI  111 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++...++..  ....++               .+.+..    ...+    +..
T Consensus         2 k~vlITGasggiG~~~a~~l~~-~G~~v~~~~~r~~--~~~~~~---------------~~~~~~----~~~~~~~~~~~   59 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAE-DGFALAIHYGQNR--EKAEEV---------------AEEARR----RGSPLVAVLGA   59 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTCSCEEEEEC
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHh----cCCceEEEEec
Confidence            4799999999999999998875 5788877655421  111111               011110    1112    334


Q ss_pred             EcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.+.++...+.+..+.+.  ++.+|+=..|
T Consensus        60 D~~~~~~~~~~~~~~~~~~~~~d~li~~Ag   89 (245)
T 2ph3_A           60 NLLEAEAATALVHQAAEVLGGLDTLVNNAG   89 (245)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            778887777666655443  6788876655

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=92.54  E-value=0.29  Score=44.36  Aligned_cols=103  Identities=15%  Similarity=0.094  Sum_probs=58.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| +|+||+.+++.+. .-++++. ++|+... ....       .. + .+.++++++.      .+|+|+...
T Consensus       145 g~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~-~~~~-------~~-~-~~~~l~ell~------~aDvV~~~~  205 (333)
T 1dxy_A          145 QQTVGVMG-TGHIGQVAIKLFK-GFGAKVI-AYDPYPM-KGDH-------PD-F-DYVSLEDLFK------QSDVIDLHV  205 (333)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-SSCC-------TT-C-EECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCcc-hhhH-------hc-c-ccCCHHHHHh------cCCEEEEcC
Confidence            36899999 5999999999876 4688876 5665321 1110       11 2 2458999886      699988765


Q ss_pred             Ch-HhHH----HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCc
Q 025154          115 DA-STVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (257)
Q Consensus       115 ~p-~~~~----~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gi  157 (257)
                      .. +.+.    +.....++.|.-+|--.+|--.++ +.|.++.+++++
T Consensus       206 P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~-~aL~~aL~~g~i  252 (333)
T 1dxy_A          206 PGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT-QAMLSNLKSGKL  252 (333)
T ss_dssp             CCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH-HHHHHHHHTTSE
T ss_pred             CCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCH-HHHHHHHHhCCc
Confidence            32 1111    222333455554444344422222 345555555444

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=92.49  E-value=0.16  Score=47.00  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=43.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+..  . .....    ..|+. +.++++++.      .+|+|+-..
T Consensus       176 gktvGIIG-lG~IG~~vA~~l~-~fG~~V~~-~d~~~--~-~~~~~----~~g~~-~~~l~ell~------~aDvV~l~~  238 (365)
T 4hy3_A          176 GSEIGIVG-FGDLGKALRRVLS-GFRARIRV-FDPWL--P-RSMLE----ENGVE-PASLEDVLT------KSDFIFVVA  238 (365)
T ss_dssp             SSEEEEEC-CSHHHHHHHHHHT-TSCCEEEE-ECSSS--C-HHHHH----HTTCE-ECCHHHHHH------SCSEEEECS
T ss_pred             CCEEEEec-CCcccHHHHHhhh-hCCCEEEE-ECCCC--C-HHHHh----hcCee-eCCHHHHHh------cCCEEEEcC
Confidence            35899999 6999999999765 56888764 66532  1 11111    23443 468999996      799988654

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}

Probab=92.45  E-value=0.19  Score=47.04  Aligned_cols=112  Identities=10%  Similarity=0.083  Sum_probs=60.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +|||.|+|. |.-..+++..+.+++++.-+.+.. ...|...  ..    . .+.+ +.|++.+++ +++..++|++|- 
T Consensus        21 ~m~ilvlG~-ggre~ala~~l~~s~~v~~v~~~p-gn~g~~~--~~----~-~~~i~~~d~~~l~~-~a~~~~id~vv~-   89 (442)
T 3lp8_A           21 SMNVLVIGS-GGREHSMLHHIRKSTLLNKLFIAP-GREGMSG--LA----D-IIDIDINSTIEVIQ-VCKKEKIELVVI-   89 (442)
T ss_dssp             CEEEEEEEC-SHHHHHHHHHHTTCTTEEEEEEEE-CCGGGTT--TS----E-ECCCCTTCHHHHHH-HHHHTTCCEEEE-
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCCCCEEEEEC-CChHHhh--cc----c-eeecCcCCHHHHHH-HHHHhCCCEEEE-
Confidence            489999994 755566777777788766544443 1112110  00    0 0111 346666543 233357897774 


Q ss_pred             CChHhHH--HHHHHHHHcCCCeEEeCCC--CC-HHHHHHHHHHhhhcCceE
Q 025154          114 TDASTVY--DNVKQATAFGMRSVVYVPH--IQ-LETVSALSAFCDKASMGC  159 (257)
Q Consensus       114 T~p~~~~--~~~~~a~~~Gi~vViGTTG--~s-~e~~~~L~~~a~~~gipv  159 (257)
                       .|+...  ..+..+.+.|+|++ |.+-  .. .......++++++.|+|+
T Consensus        90 -g~E~~l~~~~~~~l~~~Gi~~~-Gp~~~a~~~~~dK~~~k~~l~~~GIp~  138 (442)
T 3lp8_A           90 -GPETPLMNGLSDALTEEGILVF-GPSKAAARLESSKGFTKELCMRYGIPT  138 (442)
T ss_dssp             -CSHHHHHTTHHHHHHHTTCEEE-SCCHHHHHHHHCHHHHHHHHHHHTCCB
T ss_pred             -CCcHHHHHHHHHHHHhcCCcEe-cCCHHHHHHhhCHHHHHHHHHHCCCCC
Confidence             244433  45566678898876 4431  00 111223556667777764

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=92.44  E-value=0.14  Score=46.56  Aligned_cols=64  Identities=14%  Similarity=0.110  Sum_probs=42.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| +|+||+.+++.+. .-++++. ++|+..  .......    ..|+. +.++++++.      .+|+|+-..
T Consensus       145 g~tvGIIG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~--~~~~~~~----~~g~~-~~~l~ell~------~aDvV~l~~  208 (330)
T 4e5n_A          145 NATVGFLG-MGAIGLAMADRLQ-GWGATLQ-YHEAKA--LDTQTEQ----RLGLR-QVACSELFA------SSDFILLAL  208 (330)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHTT-TSCCEEE-EECSSC--CCHHHHH----HHTEE-ECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-eCHHHHHHHHHHH-HCCCEEE-EECCCC--CcHhHHH----hcCce-eCCHHHHHh------hCCEEEEcC
Confidence            46999999 6999999999765 5688866 466532  1111111    22443 348999986      689988654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=92.43  E-value=0.12  Score=46.40  Aligned_cols=98  Identities=15%  Similarity=0.091  Sum_probs=53.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      -+|.|+|++|.+|...++++. ..+.++++. .+.. ..+...-+|.  .. +.-..++.+.+.+...+..+|++||++-
T Consensus       152 ~~VlV~Ga~g~iG~~~~q~a~-~~Ga~Vi~~-~~~~-~~~~~~~lGa--~~-i~~~~~~~~~~~~~~~~~g~D~vid~~g  225 (343)
T 3gaz_A          152 QTVLIQGGGGGVGHVAIQIAL-ARGARVFAT-ARGS-DLEYVRDLGA--TP-IDASREPEDYAAEHTAGQGFDLVYDTLG  225 (343)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEE-ECHH-HHHHHHHHTS--EE-EETTSCHHHHHHHHHTTSCEEEEEESSC
T ss_pred             CEEEEecCCCHHHHHHHHHHH-HCCCEEEEE-eCHH-HHHHHHHcCC--CE-eccCCCHHHHHHHHhcCCCceEEEECCC
Confidence            379999988999999998765 568898887 4321 0111111111  11 1111233333321111236899999987


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      .+.....+..+...|.=+++|..+
T Consensus       226 ~~~~~~~~~~l~~~G~iv~~g~~~  249 (343)
T 3gaz_A          226 GPVLDASFSAVKRFGHVVSCLGWG  249 (343)
T ss_dssp             THHHHHHHHHEEEEEEEEESCCCS
T ss_pred             cHHHHHHHHHHhcCCeEEEEcccC
Confidence            655444555444455555555543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=92.42  E-value=0.26  Score=44.88  Aligned_cols=64  Identities=16%  Similarity=0.185  Sum_probs=43.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| +|+||+.+++.+. .-++++. ++|+.. ..+  ...    ..|+. +.++++++.      .+|+|+...
T Consensus       165 g~tvgIIG-lG~IG~~vA~~l~-~~G~~V~-~~d~~~-~~~--~~~----~~g~~-~~~l~ell~------~aDvV~l~~  227 (335)
T 2g76_A          165 GKTLGILG-LGRIGREVATRMQ-SFGMKTI-GYDPII-SPE--VSA----SFGVQ-QLPLEEIWP------LCDFITVHT  227 (335)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEE-EECSSS-CHH--HHH----HTTCE-ECCHHHHGG------GCSEEEECC
T ss_pred             cCEEEEEe-ECHHHHHHHHHHH-HCCCEEE-EECCCc-chh--hhh----hcCce-eCCHHHHHh------cCCEEEEec
Confidence            46899999 6999999999876 4578876 466532 111  111    23443 358889885      699988765


Q ss_pred             C
Q 025154          115 D  115 (257)
Q Consensus       115 ~  115 (257)
                      .
T Consensus       228 P  228 (335)
T 2g76_A          228 P  228 (335)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=92.42  E-value=0.3  Score=46.11  Aligned_cols=117  Identities=19%  Similarity=0.273  Sum_probs=72.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-e---e-eecCHHHHHhccccC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-I---P-VMSDLTMVLGSISQS  104 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~g-v---~-v~~dl~~~l~~~~~~  104 (257)
                      ..||+|.| .|.+|+..++.+.+ .+.++|++.|+.     ..|-|..++.......+ +   + -+-+.++++.     
T Consensus       221 g~~vaVqG-~GnVG~~aa~~l~e-~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~-----  293 (424)
T 3k92_A          221 NARIIIQG-FGNAGSFLAKFMHD-AGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLE-----  293 (424)
T ss_dssp             GCEEEEEC-CSHHHHHHHHHHHH-HTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHH-----
T ss_pred             cCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCcccee-----
Confidence            36899999 59999999998764 589999999953     34666655443221222 1   1 1124577776     


Q ss_pred             CCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          105 KARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT-G-~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      .++||+|-+...... .+++.   +.+..+|++-- + +++|..+.|    +++  .|+|.|-+..
T Consensus       294 ~~~DIliPcA~~n~I~~~~a~---~l~ak~V~EgAN~p~t~eA~~iL----~~r--GI~~~PD~~a  350 (424)
T 3k92_A          294 KDCDILVPAAISNQITAKNAH---NIQASIVVERANGPTTIDATKIL----NER--GVLLVPDILA  350 (424)
T ss_dssp             SCCSEEEECSCSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHH----HHT--TCEEECHHHH
T ss_pred             ccccEEeecCcccccChhhHh---hcCceEEEcCCCCCCCHHHHHHH----HHC--CCEEECchHh
Confidence            589999988753322 23333   34888888765 2 455433333    333  4666676654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=92.36  E-value=1.5  Score=37.88  Aligned_cols=82  Identities=17%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      ++.|+|++|.+|+.+++.+++ .+.+++. +++..  ....++.              +++-+.   ...+. +..|.|.
T Consensus        26 ~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~d   84 (279)
T 3sju_A           26 TAFVTGVSSGIGLAVARTLAA-RGIAVYG-CARDA--KNVSAAV--------------DGLRAA---GHDVDGSSCDVTS   84 (279)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHTT---TCCEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhc---CCcEEEEECCCCC
Confidence            689999999999999998875 5788764 44321  1111110              111110   01222 3458888


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      ++...+.+..+.+.  ++.+|+-..|
T Consensus        85 ~~~v~~~~~~~~~~~g~id~lv~nAg  110 (279)
T 3sju_A           85 TDEVHAAVAAAVERFGPIGILVNSAG  110 (279)
T ss_dssp             HHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEECCC
Confidence            88888877776654  6888886655

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.25  E-value=0.21  Score=44.46  Aligned_cols=95  Identities=11%  Similarity=0.054  Sum_probs=49.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--ee-e--cCHHHHHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PV-M--SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v-~--~dl~~~l~~~~~~~~~DVv  110 (257)
                      -+|.|+|++|.+|...++.+. ..+.++++...+.   .....+.    .+|.  .+ +  .++.+.+.+...+..+|++
T Consensus       150 ~~vlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~~~---~~~~~~~----~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~v  221 (334)
T 3qwb_A          150 DYVLLFAAAGGVGLILNQLLK-MKGAHTIAVASTD---EKLKIAK----EYGAEYLINASKEDILRQVLKFTNGKGVDAS  221 (334)
T ss_dssp             CEEEESSTTBHHHHHHHHHHH-HTTCEEEEEESSH---HHHHHHH----HTTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCH---HHHHHHH----HcCCcEEEeCCCchHHHHHHHHhCCCCceEE
Confidence            479999988999999998765 5678877654321   1111111    1121  11 1  2222222211112357888


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ||++-.+.....+......|.=+.+|..
T Consensus       222 id~~g~~~~~~~~~~l~~~G~iv~~G~~  249 (334)
T 3qwb_A          222 FDSVGKDTFEISLAALKRKGVFVSFGNA  249 (334)
T ss_dssp             EECCGGGGHHHHHHHEEEEEEEEECCCT
T ss_pred             EECCChHHHHHHHHHhccCCEEEEEcCC
Confidence            8877654444444444445555555543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=92.23  E-value=0.21  Score=45.18  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=24.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      ++||+|+|+ |.||..++..+... ++ +|+ .+|.
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~-~~~~v~-l~Di   37 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIK-QLGDVV-LFDI   37 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCEEE-EECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCceEE-EEeC
Confidence            579999996 99999999877654 44 544 5674

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=92.21  E-value=0.45  Score=39.65  Aligned_cols=85  Identities=19%  Similarity=0.180  Sum_probs=47.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      |.++.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.              +++...  ....+. +..|.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~--~~~~~~~~~~D~   61 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALAR-DGYALAL-GARSV--DRLEKIA--------------HELMQE--QGVEVFYHHLDV   61 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHH--HCCCEEEEECCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhh--cCCeEEEEEecc
Confidence            34689999999999999999875 5777654 34321  1111110              111100  001122 23477


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.++...+.+..+.+.  ++.+|+=..|
T Consensus        62 ~~~~~v~~~~~~~~~~~g~id~li~~Ag   89 (235)
T 3l77_A           62 SKAESVEEFSKKVLERFGDVDVVVANAG   89 (235)
T ss_dssp             TCHHHHHHHCC-HHHHHSSCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            7777777666655543  6777776654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=92.19  E-value=0.6  Score=39.49  Aligned_cols=84  Identities=12%  Similarity=0.090  Sum_probs=50.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCC--cEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~--~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvI  111 (257)
                      +.+|.|+|++|.+|+.+++.+.+...  .+++.. ++....  ...               ++++...   ..... +..
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~-~r~~~~--~~~---------------~~~l~~~---~~~~~~~~~   79 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTT-CRNREQ--AKE---------------LEDLAKN---HSNIHILEI   79 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEE-ESCTTS--CHH---------------HHHHHHH---CTTEEEEEC
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEE-ecChhh--hHH---------------HHHhhcc---CCceEEEEe
Confidence            45799999999999999999886432  777654 332100  000               1111110   01222 345


Q ss_pred             EcCChHhHHHHHHHHHHc----CCCeEEeCCC
Q 025154          112 DFTDASTVYDNVKQATAF----GMRSVVYVPH  139 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~----Gi~vViGTTG  139 (257)
                      |++.++...+.+..+.+.    ++.+|+=..|
T Consensus        80 Dl~~~~~v~~~~~~~~~~~g~~~id~li~~Ag  111 (267)
T 1sny_A           80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAG  111 (267)
T ss_dssp             CTTCGGGHHHHHHHHHHHHGGGCCSEEEECCC
T ss_pred             cCCChHHHHHHHHHHHHhcCCCCccEEEECCC
Confidence            778888777766655442    5888876655

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=92.16  E-value=1.2  Score=39.66  Aligned_cols=30  Identities=3%  Similarity=0.178  Sum_probs=23.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +|.|.|++|.+|...++++.. .+.++++..
T Consensus       167 ~vli~gg~g~vG~~a~qla~~-~Ga~Vi~~~  196 (349)
T 3pi7_A          167 AFVMTAGASQLCKLIIGLAKE-EGFRPIVTV  196 (349)
T ss_dssp             EEEESSTTSHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCEEEEEe
Confidence            577777789999999987664 577877654

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=92.12  E-value=0.7  Score=43.58  Aligned_cols=31  Identities=26%  Similarity=0.377  Sum_probs=25.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .||.|+|+ |..|..+++.++. .++.=+.++|
T Consensus        41 ~~VlvvG~-GGlGs~va~~La~-aGvg~i~ivD   71 (434)
T 1tt5_B           41 CKVLVIGA-GGLGCELLKNLAL-SGFRQIHVID   71 (434)
T ss_dssp             CCEEEECS-STHHHHHHHHHHH-TTCCCEEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-cCCCEEEEEc
Confidence            58999996 9999999999874 5665566777

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=92.11  E-value=1.4  Score=36.97  Aligned_cols=80  Identities=16%  Similarity=0.141  Sum_probs=49.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.. ++..  ....++.               +.+.     ..+. +..|++
T Consensus        13 k~vlVTGasggiG~~~a~~l~~-~G~~V~~~-~r~~--~~~~~~~---------------~~~~-----~~~~~~~~D~~   68 (265)
T 2o23_A           13 LVAVITGGASGLGLATAERLVG-QGASAVLL-DLPN--SGGEAQA---------------KKLG-----NNCVFAPADVT   68 (265)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ECTT--SSHHHHH---------------HHHC-----TTEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEE-eCCc--HhHHHHH---------------HHhC-----CceEEEEcCCC
Confidence            4799999999999999999875 57887654 4321  1111110               0111     1222 345778


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus        69 ~~~~v~~~~~~~~~~~g~id~li~~Ag   95 (265)
T 2o23_A           69 SEKDVQTALALAKGKFGRVDVAVNCAG   95 (265)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCc
Confidence            887777666655443  6778776554

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=92.03  E-value=0.077  Score=51.19  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ..++|+|+| +|+||+.+++.+.. -++++++ +|+.. ..  ....    ..|+... ++++++.      .+|+|+-.
T Consensus       141 ~g~~vgIIG-~G~IG~~vA~~l~~-~G~~V~~-~d~~~-~~--~~a~----~~g~~~~-~l~e~~~------~aDvV~l~  203 (529)
T 1ygy_A          141 FGKTVGVVG-LGRIGQLVAQRIAA-FGAYVVA-YDPYV-SP--ARAA----QLGIELL-SLDDLLA------RADFISVH  203 (529)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHT-TTCEEEE-ECTTS-CH--HHHH----HHTCEEC-CHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHh-CCCEEEE-ECCCC-Ch--hHHH----hcCcEEc-CHHHHHh------cCCEEEEC
Confidence            346999999 69999999998874 5788764 57532 11  1111    2344444 7888885      69998877


Q ss_pred             CChH
Q 025154          114 TDAS  117 (257)
Q Consensus       114 T~p~  117 (257)
                      +.+.
T Consensus       204 ~P~~  207 (529)
T 1ygy_A          204 LPKT  207 (529)
T ss_dssp             CCCS
T ss_pred             CCCc
Confidence            6544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=92.02  E-value=0.57  Score=39.29  Aligned_cols=153  Identities=9%  Similarity=0.047  Sum_probs=79.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---cCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVv  110 (257)
                      ..+|.|+|+ |++|+.+++.+.+ .+.  +-++|...  .....+.     .++.+ +   .+.+.+.+.  .-.++|++
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~-~g~--v~vid~~~--~~~~~~~-----~~~~~i~gd~~~~~~l~~a--~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRG-SEV--FVLAEDEN--VRKKVLR-----SGANFVHGDPTRVSDLEKA--NVRGARAV   75 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTT-SEE--EEEESCGG--GHHHHHH-----TTCEEEESCTTCHHHHHHT--TCTTCSEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHh-CCe--EEEEECCH--HHHHHHh-----cCCeEEEcCCCCHHHHHhc--CcchhcEE
Confidence            458999995 9999999998764 455  44666431  1111111     12222 2   233322110  00378988


Q ss_pred             EEcCChHhH-HHHHHHHHHcCCC--eEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHH--------HHH-HH
Q 025154          111 IDFTDASTV-YDNVKQATAFGMR--SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQ--------QAA-IS  178 (257)
Q Consensus       111 IDFT~p~~~-~~~~~~a~~~Gi~--vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~--------~~a-~~  178 (257)
                      |-.+..+.. ...+..|.+.+.+  +|.=.  .+++..+.++    +.|+-.+++|....+-.+..        .+. ..
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~iia~~--~~~~~~~~l~----~~G~~~vi~p~~~~a~~l~~~~~~~~~~~~~~~~  149 (234)
T 2aef_A           76 IVDLESDSETIHCILGIRKIDESVRIIAEA--ERYENIEQLR----MAGADQVISPFVISGRLMSRSIDDGYEAMFVQDV  149 (234)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEEEC--SSGGGHHHHH----HHTCSEEECHHHHHHHHHHHTSSCSHHHHHHHHH
T ss_pred             EEcCCCcHHHHHHHHHHHHHCCCCeEEEEE--CCHhHHHHHH----HCCCCEEECHHHHHHHHHHHHHcCccHHHHHHHH
Confidence            866654433 3444556666654  44323  2334444454    45677889998888876532        222 22


Q ss_pred             hcCCCCCeEEEeccCCCCCCCCCccHHHH
Q 025154          179 ASFHYKNVEIVESRPNARVRYMTRTLISM  207 (257)
Q Consensus       179 l~~~~~DiEIiE~HH~~K~DapSGTa~~l  207 (257)
                      +. ...+.++.|..=...-..-+-|..++
T Consensus       150 ~~-~~~~~~~~e~~V~~~s~~~Gk~l~el  177 (234)
T 2aef_A          150 LA-EESTRRMVEVPIPEGSKLEGVSVLDA  177 (234)
T ss_dssp             HC----CCEEEEEECCTTBTTTTCBHHHH
T ss_pred             hc-CCCCceEEEEEECCCCccCCCCHHHh
Confidence            22 12256777765332211224566555

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.01  E-value=0.082  Score=47.34  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=40.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhhc-CCCCCCeeeecCHHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---~g--~d~g~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (257)
                      |||+|+|+ |.||..++..+....-. +|+ .+|...   .|  .|...... ...+..+..++| .+.+.      ++|
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~-L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~------~aD   71 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIA-LVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLK------GSE   71 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEE-EECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGT------TCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhC------CCC
Confidence            69999997 99999999887765433 444 566431   01  11111110 101223445667 55664      799


Q ss_pred             EEEEc
Q 025154          109 VVIDF  113 (257)
Q Consensus       109 VvIDF  113 (257)
                      +||-.
T Consensus        72 iVVia   76 (294)
T 1oju_A           72 IIVVT   76 (294)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88864

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=91.96  E-value=0.37  Score=44.39  Aligned_cols=50  Identities=24%  Similarity=0.250  Sum_probs=26.4

Q ss_pred             eeeccccccccccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      |-.-||-|.|+--       ..|+-.+.||+|+|+ |..|+++++.+.+ -+++++.+-
T Consensus         5 ~~~~~~~~~~~~~-------~~~mm~~~~I~ilGg-G~lg~~l~~aa~~-lG~~v~~~d   54 (403)
T 3k5i_A            5 HHHHHHSSENLYF-------QGHMWNSRKVGVLGG-GQLGRMLVESANR-LNIQVNVLD   54 (403)
T ss_dssp             -----------------------CCSCCEEEEECC-SHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             cccccccccceeE-------eccCCCCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEE
Confidence            3345666766642       223323469999995 9999999998765 588887654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.95  E-value=0.15  Score=45.22  Aligned_cols=67  Identities=12%  Similarity=0.038  Sum_probs=38.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      .++.|+|+ |.||+.++..+.. .+..-+-++++..  ..+.+++   .......++++++++.      .+|+||..|.
T Consensus       118 k~vlvlGa-Gg~g~aia~~L~~-~G~~~v~v~~R~~--~~a~~la---~~~~~~~~~~~~~~~~------~aDiVInaTp  184 (277)
T 3don_A          118 AYILILGA-GGASKGIANELYK-IVRPTLTVANRTM--SRFNNWS---LNINKINLSHAESHLD------EFDIIINTTP  184 (277)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHT-TCCSCCEEECSCG--GGGTTCC---SCCEEECHHHHHHTGG------GCSEEEECCC
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHH---HhcccccHhhHHHHhc------CCCEEEECcc
Confidence            48999996 9999999998874 4663334555431  1122222   1122222445555553      6788886664

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.94  E-value=0.18  Score=44.58  Aligned_cols=31  Identities=16%  Similarity=0.266  Sum_probs=24.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      -+|.|+|++|.+|+.+++.+.. .+.++++..
T Consensus       142 ~~vlV~Ga~ggiG~~~~~~a~~-~G~~V~~~~  172 (327)
T 1qor_A          142 EQFLFHAAAGGVGLIACQWAKA-LGAKLIGTV  172 (327)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-cCCEEEEEe
Confidence            4799999899999999997764 467776543

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=91.87  E-value=0.44  Score=41.21  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=26.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .||.|+|++|.+|+.+++.+.+ .+.++++..
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   32 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLE-NGYSVNTTI   32 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CEEEEECChhHHHHHHHHHHHH-CCCEEEEEE
Confidence            4799999999999999998875 578888655

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=91.86  E-value=2.1  Score=36.60  Aligned_cols=85  Identities=14%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.. ++..  ....++.              +++-.. ....... +..|++
T Consensus        33 k~vlVTGasggIG~~la~~l~~-~G~~V~~~-~r~~--~~~~~~~--------------~~~~~~-~~~~~~~~~~~Dl~   93 (279)
T 1xg5_A           33 RLALVTGASGGIGAAVARALVQ-QGLKVVGC-ARTV--GNIEELA--------------AECKSA-GYPGTLIPYRCDLS   93 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEE-ESCH--HHHHHHH--------------HHHHHT-TCSSEEEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEE-ECCh--HHHHHHH--------------HHHHhc-CCCceEEEEEecCC
Confidence            4699999999999999999875 57887654 4321  1111110              011110 0000111 235788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++.....+..+.+.  ++.+|+-..|
T Consensus        94 ~~~~v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           94 NEEDILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            888777666654432  6888876655

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=91.85  E-value=0.81  Score=38.76  Aligned_cols=33  Identities=9%  Similarity=0.208  Sum_probs=25.5

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .++.+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~-~G~~V~~~   52 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKS-KSWNTISI   52 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            3345799999999999999998875 57886643

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.80  E-value=1.3  Score=41.26  Aligned_cols=139  Identities=17%  Similarity=0.116  Sum_probs=76.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVv  110 (257)
                      ..||.|+|. |+.|...++.+. ..++++.+ .|....  ......+.    ..|++++  .+.+++++     ..+|+|
T Consensus         9 ~k~v~viG~-G~sG~s~A~~l~-~~G~~V~~-~D~~~~~~~~~~~~L~----~~gi~~~~g~~~~~~~~-----~~~d~v   76 (451)
T 3lk7_A            9 NKKVLVLGL-ARSGEAAARLLA-KLGAIVTV-NDGKPFDENPTAQSLL----EEGIKVVCGSHPLELLD-----EDFCYM   76 (451)
T ss_dssp             TCEEEEECC-TTTHHHHHHHHH-HTTCEEEE-EESSCGGGCHHHHHHH----HTTCEEEESCCCGGGGG-----SCEEEE
T ss_pred             CCEEEEEee-CHHHHHHHHHHH-hCCCEEEE-EeCCcccCChHHHHHH----hCCCEEEECCChHHhhc-----CCCCEE
Confidence            358999996 999999987665 56888765 674321  11112221    3466664  23444553     138988


Q ss_pred             EEcC-ChHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154          111 IDFT-DASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (257)
Q Consensus       111 IDFT-~p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~  173 (257)
                      |--+ .|.. .+.+..|.+.|+|++              ||-||-+-  -....|..+-++.|..+....|+......+ 
T Consensus        77 v~spgi~~~-~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~~~~~-  154 (451)
T 3lk7_A           77 IKNPGIPYN-NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPASEV-  154 (451)
T ss_dssp             EECTTSCTT-SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSCHHHH-
T ss_pred             EECCcCCCC-ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChhhhhh-
Confidence            7543 2322 234566667776644              55555321  122345555566666667778854433211 


Q ss_pred             HHHHHhcCCCCCeEEEec
Q 025154          174 QAAISASFHYKNVEIVES  191 (257)
Q Consensus       174 ~~a~~l~~~~~DiEIiE~  191 (257)
                        .  ......|+-|+|.
T Consensus       155 --~--~~~~~~d~~VlE~  168 (451)
T 3lk7_A          155 --V--QAANDKDTLVMEL  168 (451)
T ss_dssp             --T--TTCCTTCEEEEEC
T ss_pred             --h--hcCCCCCEEEEEC
Confidence              1  1112468888885

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=91.73  E-value=1.5  Score=37.52  Aligned_cols=83  Identities=19%  Similarity=0.223  Sum_probs=49.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.              +++-+.   ..+.. +..|++
T Consensus        32 k~vlITGasggIG~~la~~L~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dl~   90 (272)
T 1yb1_A           32 EIVLITGAGHGIGRLTAYEFAK-LKSKLVL-WDINK--HGLEETA--------------AKCKGL---GAKVHTFVVDCS   90 (272)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EEcCH--HHHHHHH--------------HHHHhc---CCeEEEEEeeCC
Confidence            5799999999999999999875 4788665 44321  1111110              011110   01222 346778


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+||-..|
T Consensus        91 ~~~~v~~~~~~~~~~~g~iD~li~~Ag  117 (272)
T 1yb1_A           91 NREDIYSSAKKVKAEIGDVSILVNNAG  117 (272)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence            888777766655543  6788876665

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=91.72  E-value=0.62  Score=45.66  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=27.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +++|.|+|++|.+|+.+++.+.+ .+.+++++.
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~-~G~~V~~~~   42 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIE-NGYDCVVAD   42 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEE
Confidence            46899999999999999998875 478887654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=91.69  E-value=0.21  Score=45.98  Aligned_cols=109  Identities=16%  Similarity=0.221  Sum_probs=64.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|.| .|++|+.+++.+. .-+++++ +.|+..   +..++.   ..++.... +.++++.     .++||++=..
T Consensus       175 GktV~I~G-~GnVG~~~A~~l~-~~GakVv-vsD~~~---~~~~~a---~~~ga~~v-~~~ell~-----~~~DIliP~A  239 (355)
T 1c1d_A          175 GLTVLVQG-LGAVGGSLASLAA-EAGAQLL-VADTDT---ERVAHA---VALGHTAV-ALEDVLS-----TPCDVFAPCA  239 (355)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSCH---HHHHHH---HHTTCEEC-CGGGGGG-----CCCSEEEECS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EEeCCc---cHHHHH---HhcCCEEe-ChHHhhc-----CccceecHhH
Confidence            35899999 5999999999876 4589999 888541   101111   12343332 5667775     3789988544


Q ss_pred             ChHhH-HHHHHHHHHcCCCeEEeCCC--CCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          115 DASTV-YDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       115 ~p~~~-~~~~~~a~~~Gi~vViGTTG--~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      ..... .+++.   ..+..+|+++..  ++.++.  .+ +-+++  .+++.|-+.
T Consensus       240 ~~~~I~~~~~~---~lk~~iVie~AN~p~t~~eA--~~-~L~~~--gIlv~Pd~~  286 (355)
T 1c1d_A          240 MGGVITTEVAR---TLDCSVVAGAANNVIADEAA--SD-ILHAR--GILYAPDFV  286 (355)
T ss_dssp             CSCCBCHHHHH---HCCCSEECCSCTTCBCSHHH--HH-HHHHT--TCEECCHHH
T ss_pred             HHhhcCHHHHh---hCCCCEEEECCCCCCCCHHH--HH-HHHhC--CEEEECCeE
Confidence            43222 23332   447889998874  333232  23 33443  466666544

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=91.67  E-value=0.21  Score=45.32  Aligned_cols=63  Identities=14%  Similarity=0.110  Sum_probs=42.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| +|+||+.+++.+. .-++++. ++|+.. .....       .. +...+++++++.      .+|+|+...
T Consensus       146 g~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~-~~~~~-------~~-~~~~~~l~ell~------~aDvV~l~~  207 (333)
T 1j4a_A          146 DQVVGVVG-TGHIGQVFMQIME-GFGAKVI-TYDIFR-NPELE-------KK-GYYVDSLDDLYK------QADVISLHV  207 (333)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSC-CHHHH-------HT-TCBCSCHHHHHH------HCSEEEECS
T ss_pred             CCEEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCc-chhHH-------hh-CeecCCHHHHHh------hCCEEEEcC
Confidence            36899999 5999999999876 4578875 466532 11111       11 223358889885      699988765


Q ss_pred             C
Q 025154          115 D  115 (257)
Q Consensus       115 ~  115 (257)
                      .
T Consensus       208 p  208 (333)
T 1j4a_A          208 P  208 (333)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=91.65  E-value=0.84  Score=38.73  Aligned_cols=82  Identities=23%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.. ++..  ....++.               +.+..   ..... +..|++
T Consensus        17 k~vlITGasggiG~~~a~~l~~-~G~~V~~~-~r~~--~~~~~~~---------------~~~~~---~~~~~~~~~D~~   74 (278)
T 2bgk_A           17 KVAIITGGAGGIGETTAKLFVR-YGAKVVIA-DIAD--DHGQKVC---------------NNIGS---PDVISFVHCDVT   74 (278)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEE-ESCH--HHHHHHH---------------HHHCC---TTTEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE-cCCh--hHHHHHH---------------HHhCC---CCceEEEECCCC
Confidence            5799999999999999999875 57887654 4321  0011110               11110   00122 345778


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++.....+..+.+.  ++.+|+-..|
T Consensus        75 ~~~~~~~~~~~~~~~~~~id~li~~Ag  101 (278)
T 2bgk_A           75 KDEDVRNLVDTTIAKHGKLDIMFGNVG  101 (278)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            887776666555433  6888874443

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=91.55  E-value=0.29  Score=43.83  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=25.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (257)
                      ++||+|+|+ |.||..++..+....-. +|+ .+|..
T Consensus         6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~-l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDAN   40 (316)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEeCC
Confidence            579999997 99999999887655322 444 56743

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=91.45  E-value=0.23  Score=44.14  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=24.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      -+|.|+|++|.+|+.+++.+.. .+.++++..
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~a~~-~G~~Vi~~~  177 (333)
T 1wly_A          147 DYVLIHAAAGGMGHIMVPWARH-LGATVIGTV  177 (333)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHH-CCCEEEEEe
Confidence            4799999999999999987764 577876543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=91.40  E-value=0.53  Score=43.16  Aligned_cols=30  Identities=33%  Similarity=0.354  Sum_probs=23.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd   68 (257)
                      -+|.|+|+ |.+|...++++. .-+. ++++ ++
T Consensus       215 ~~VlV~Ga-G~vG~~aiqlak-~~Ga~~Vi~-~~  245 (404)
T 3ip1_A          215 DNVVILGG-GPIGLAAVAILK-HAGASKVIL-SE  245 (404)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCSEEEE-EC
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCCEEEE-EC
Confidence            37999997 999999998765 5677 6665 44

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=91.38  E-value=1.4  Score=37.31  Aligned_cols=85  Identities=13%  Similarity=0.179  Sum_probs=52.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      |.++.|+|++|.+|+.+++.+.+ .+.+++....+..  .....+               .+.+...  ...+. +..|.
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~-~G~~v~~~~~~~~--~~~~~~---------------~~~~~~~--~~~~~~~~~Dl   66 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLA-KGYSVTVTYHSDT--TAMETM---------------KETYKDV--EERLQFVQADV   66 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHTGGG--GGGEEEEECCT
T ss_pred             cCEEEEeCCCchhHHHHHHHHHH-CCCEEEEEcCCCh--HHHHHH---------------HHHHHhc--CCceEEEEecC
Confidence            44689999999999999998875 5788876544321  000100               1111100  01222 34688


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      +.++...+.+..+.+.  ++.+|+=..|
T Consensus        67 ~~~~~v~~~~~~~~~~~g~id~lv~~Ag   94 (264)
T 3i4f_A           67 TKKEDLHKIVEEAMSHFGKIDFLINNAG   94 (264)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            9888888877776654  7888886666

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=91.34  E-value=0.99  Score=38.83  Aligned_cols=81  Identities=19%  Similarity=0.204  Sum_probs=50.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|+|++|.+|+.+++.+.+ .+..++....+..  ....++.               +.+..    ...+   +..|.
T Consensus        29 ~~lVTGas~GIG~aia~~la~-~G~~Vv~~~~~~~--~~~~~~~---------------~~~~~----~~~~~~~~~~Dl   86 (267)
T 3u5t_A           29 VAIVTGASRGIGAAIAARLAS-DGFTVVINYAGKA--AAAEEVA---------------GKIEA----AGGKALTAQADV   86 (267)
T ss_dssp             EEEEESCSSHHHHHHHHHHHH-HTCEEEEEESSCS--HHHHHHH---------------HHHHH----TTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH---------------HHHHh----cCCeEEEEEcCC
Confidence            589999999999999998875 4788775444321  1111111               11111    1122   34588


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.++...+.+..+.+.  ++.+++-..|
T Consensus        87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAG  114 (267)
T 3u5t_A           87 SDPAAVRRLFATAEEAFGGVDVLVNNAG  114 (267)
T ss_dssp             TCHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888888877776654  6777776554

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=91.32  E-value=0.15  Score=46.04  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=25.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .+||+|+|+ |.+|..++-.+...+-+.=+..+|.
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di   38 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDV   38 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            389999997 9999999988776643433445774

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=91.32  E-value=0.25  Score=44.79  Aligned_cols=63  Identities=17%  Similarity=0.319  Sum_probs=42.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+..  .....+      .....+.++++++.      .+|+|+-..
T Consensus       137 gktvGIiG-lG~IG~~vA~~l~-~~G~~V~~-~dr~~--~~~~~~------~~~~~~~~l~ell~------~aDvV~l~l  199 (324)
T 3evt_A          137 GQQLLIYG-TGQIGQSLAAKAS-ALGMHVIG-VNTTG--HPADHF------HETVAFTATADALA------TANFIVNAL  199 (324)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-EESSC--CCCTTC------SEEEEGGGCHHHHH------HCSEEEECC
T ss_pred             CCeEEEEC-cCHHHHHHHHHHH-hCCCEEEE-ECCCc--chhHhH------hhccccCCHHHHHh------hCCEEEEcC
Confidence            46899999 6999999999876 45898875 56431  111110      01122467888886      689988654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=91.32  E-value=0.19  Score=43.34  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .|+||.|+|++|.+|+.+++.+.+. +.++++...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   39 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVAS-GEEVTVLDD   39 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHC-CCEEEEEec
Confidence            3679999999999999999998864 778776543

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.29  E-value=0.77  Score=37.99  Aligned_cols=80  Identities=14%  Similarity=0.155  Sum_probs=49.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCC--cEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARG--MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~--~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (257)
                      .+|.|+|++|.+|+.+++.+.+. +  .+++.. ++..  ....++.               +. ..    .... +..|
T Consensus         4 k~vlItGasggiG~~la~~l~~~-g~~~~V~~~-~r~~--~~~~~l~---------------~~-~~----~~~~~~~~D   59 (250)
T 1yo6_A            4 GSVVVTGANRGIGLGLVQQLVKD-KNIRHIIAT-ARDV--EKATELK---------------SI-KD----SRVHVLPLT   59 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTC-TTCCEEEEE-ESSG--GGCHHHH---------------TC-CC----TTEEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHHhc-CCCcEEEEE-ecCH--HHHHHHH---------------hc-cC----CceEEEEee
Confidence            47999999999999999998864 5  777654 3321  1111111               00 00    1222 3467


Q ss_pred             cCChHhHHHHHHHHHHc----CCCeEEeCCC
Q 025154          113 FTDASTVYDNVKQATAF----GMRSVVYVPH  139 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~----Gi~vViGTTG  139 (257)
                      ++.++...+.+..+.+.    ++.+|+-..|
T Consensus        60 ~~~~~~~~~~~~~~~~~~g~~~id~li~~Ag   90 (250)
T 1yo6_A           60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAG   90 (250)
T ss_dssp             TTCHHHHHHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCCcEEEECCc
Confidence            88888777766655443    6888876655

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=91.13  E-value=3.8  Score=36.81  Aligned_cols=88  Identities=19%  Similarity=0.303  Sum_probs=53.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (257)
                      ..|.|+|++|.+|+++++.+++ .+.+++...........   +           ...++++.+++. .....   +..|
T Consensus        46 k~vlVTGas~GIG~aia~~La~-~Ga~Vvl~~r~~~~~~~---l-----------~~~l~~~~~~~~-~~g~~~~~~~~D  109 (346)
T 3kvo_A           46 CTVFITGASRGIGKAIALKAAK-DGANIVIAAKTAQPHPK---L-----------LGTIYTAAEEIE-AVGGKALPCIVD  109 (346)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEEESCCSCCSS---S-----------CCCHHHHHHHHH-HTTCEEEEEECC
T ss_pred             CEEEEeCCChHHHHHHHHHHHH-CCCEEEEEECChhhhhh---h-----------HHHHHHHHHHHH-hcCCeEEEEEcc
Confidence            3689999999999999998875 57887654332111100   0           011111111000 01222   3468


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .+.++.+...+..+.+.  ++.+||=..|
T Consensus       110 v~d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          110 VRDEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            89999988888877765  8898886655

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=91.00  E-value=0.42  Score=42.40  Aligned_cols=31  Identities=29%  Similarity=0.418  Sum_probs=25.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      -+|.|+|++|.+|..+++++. ..+.++++..
T Consensus       151 ~~vlI~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~  181 (336)
T 4b7c_A          151 ETVVISGAAGAVGSVAGQIAR-LKGCRVVGIA  181 (336)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEe
Confidence            479999999999999998766 5678887654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=90.99  E-value=0.4  Score=42.47  Aligned_cols=94  Identities=17%  Similarity=0.219  Sum_probs=49.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--ee-e---cCHHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PV-M---SDLTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v-~---~dl~~~l~~~~~~~~~DV  109 (257)
                      -+|.|+|++|.+|+.+++.+. ..+.++++. ++..  .....+.    .+|.  .+ +   .++.+.+.+... ..+|+
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~~~-~~G~~V~~~-~~~~--~~~~~~~----~~g~~~~~d~~~~~~~~~~~~~~~~-~~~d~  217 (333)
T 1v3u_A          147 ETVLVSAAAGAVGSVVGQIAK-LKGCKVVGA-AGSD--EKIAYLK----QIGFDAAFNYKTVNSLEEALKKASP-DGYDC  217 (333)
T ss_dssp             CEEEEESTTBHHHHHHHHHHH-HTTCEEEEE-ESSH--HHHHHHH----HTTCSEEEETTSCSCHHHHHHHHCT-TCEEE
T ss_pred             CEEEEecCCCcHHHHHHHHHH-HCCCEEEEE-eCCH--HHHHHHH----hcCCcEEEecCCHHHHHHHHHHHhC-CCCeE
Confidence            479999999999999998766 467787754 4321  1111111    1111  11 1   234443332111 25899


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      +||.+-.+.....+......|.=+++|..
T Consensus       218 vi~~~g~~~~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          218 YFDNVGGEFLNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             EEESSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             EEECCChHHHHHHHHHHhcCCEEEEEecc
Confidence            99888654433333333334554555644

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.91  E-value=0.64  Score=41.29  Aligned_cols=31  Identities=29%  Similarity=0.430  Sum_probs=24.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~   69 (257)
                      |||+|+|+ |.||..++..+... ++  +|+ .+|.
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~-g~~~eV~-L~D~   33 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLR-GSCSELV-LVDR   33 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCCSEEE-EECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCCCEEE-EEeC
Confidence            59999997 99999999877654 55  554 5664

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=90.89  E-value=3.3  Score=35.46  Aligned_cols=83  Identities=13%  Similarity=0.090  Sum_probs=49.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .++.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.              +++-+.   ..++. +..|.+
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~   81 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGK-EGLRVFV-CARGE--EGLRTTL--------------KELREA---GVEADGRTCDVR   81 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhc---CCceEEEECCCC
Confidence            4799999999999999998875 5788765 44321  1111110              111110   01222 346788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++.....+..+.+.  ++.+|+=..|
T Consensus        82 ~~~~v~~~~~~~~~~~g~iD~lv~~Ag  108 (277)
T 2rhc_B           82 SVPEIEALVAAVVERYGPVDVLVNNAG  108 (277)
T ss_dssp             CHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            888877777665543  5788876554

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=90.86  E-value=0.58  Score=41.66  Aligned_cols=97  Identities=8%  Similarity=0.011  Sum_probs=52.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e--cCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M--SDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~--~dl~~~l~~~~~~~~~DVvID  112 (257)
                      -+|.|+|+.|.+|...++++. ..+.++++...+...-..+.+ +|.    ...+ +  .++.+.+.++..+..+|++||
T Consensus       146 ~~VlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~~~~~~~~~~~-lga----~~~~~~~~~~~~~~~~~~~~~~g~Dvvid  219 (340)
T 3gms_A          146 DVLLVNACGSAIGHLFAQLSQ-ILNFRLIAVTRNNKHTEELLR-LGA----AYVIDTSTAPLYETVMELTNGIGADAAID  219 (340)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HHTCEEEEEESSSTTHHHHHH-HTC----SEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHh-CCC----cEEEeCCcccHHHHHHHHhCCCCCcEEEE
Confidence            479999997899999998766 457887765433211111111 111    1111 1  233332221111236899999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ++-.......+......|.=+.+|..
T Consensus       220 ~~g~~~~~~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          220 SIGGPDGNELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             SSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             CCCChhHHHHHHHhcCCCEEEEEeec
Confidence            88766665555444445555556654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=90.84  E-value=0.49  Score=42.29  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=25.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      -+|.|+|++|.+|...++.+. ..+.++++...
T Consensus       161 ~~VlV~Gasg~iG~~~~~~a~-~~Ga~Vi~~~~  192 (342)
T 4eye_A          161 ETVLVLGAAGGIGTAAIQIAK-GMGAKVIAVVN  192 (342)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeC
Confidence            379999999999999998765 56788876554

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=90.83  E-value=0.47  Score=42.57  Aligned_cols=33  Identities=30%  Similarity=0.355  Sum_probs=24.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      ++||+|+|+ |.+|..++-.+....-+ +|+ .+|.
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~-L~Di   40 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELV-LIDV   40 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEE-EECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeC
Confidence            579999997 99999999887755322 454 5674

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=90.82  E-value=1  Score=38.85  Aligned_cols=83  Identities=22%  Similarity=0.319  Sum_probs=50.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCc-cEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDFT  114 (257)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++.. ++..  ....++.           ..+.+. .     ... -+..|.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~-~G~~V~~~-~r~~--~~~~~~~-----------~~~~~~-~-----~~~~~~~~Dv~   87 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELAR-RGAMVIGT-ATTE--AGAEGIG-----------AAFKQA-G-----LEGRGAVLNVN   87 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEE-ESSH--HHHHHHH-----------HHHHHH-T-----CCCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHHH-----------HHHHhc-C-----CcEEEEEEeCC
Confidence            3688999999999999998875 57877653 4321  1111110           000110 0     122 2456888


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++.....+..+.+.  ++.+|+-..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (270)
T 3ftp_A           88 DATAVDALVESTLKEFGALNVLVNNAG  114 (270)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888888777766554  6888886654

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=90.77  E-value=2  Score=36.07  Aligned_cols=78  Identities=26%  Similarity=0.336  Sum_probs=48.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.. ++..  ...                  +++.++    .... +..|++
T Consensus         6 k~vlVTGas~giG~~ia~~l~~-~G~~V~~~-~r~~--~~~------------------~~~~~~----~~~~~~~~D~~   59 (245)
T 1uls_A            6 KAVLITGAAHGIGRATLELFAK-EGARLVAC-DIEE--GPL------------------REAAEA----VGAHPVVMDVA   59 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEE-ESCH--HHH------------------HHHHHT----TTCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE-eCCH--HHH------------------HHHHHH----cCCEEEEecCC
Confidence            4799999999999999998875 57887654 4321  111                  111111    0122 345778


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+=..|
T Consensus        60 ~~~~~~~~~~~~~~~~g~id~lvn~Ag   86 (245)
T 1uls_A           60 DPASVERGFAEALAHLGRLDGVVHYAG   86 (245)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            877776666655443  5777776655

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=90.75  E-value=3  Score=35.53  Aligned_cols=30  Identities=33%  Similarity=0.397  Sum_probs=25.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~   38 (264)
T 2dtx_A            9 KVVIVTGASMGIGRAIAERFVD-EGSKVIDL   38 (264)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            4799999999999999998875 57777654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=90.75  E-value=1.6  Score=36.11  Aligned_cols=79  Identities=15%  Similarity=0.186  Sum_probs=48.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.. ++..  ...                  +++.+++   .... +..|.+
T Consensus         6 k~vlVtGasggiG~~~a~~l~~-~G~~V~~~-~r~~--~~~------------------~~~~~~~---~~~~~~~~D~~   60 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHA-KGYRVGLM-ARDE--KRL------------------QALAAEL---EGALPLPGDVR   60 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEEE-ESCH--HHH------------------HHHHHHS---TTCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEE-ECCH--HHH------------------HHHHHHh---hhceEEEecCC
Confidence            4699999999999999999875 57887654 3321  111                  1111100   0122 345778


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus        61 ~~~~~~~~~~~~~~~~~~id~li~~Ag   87 (234)
T 2ehd_A           61 EEGDWARAVAAMEEAFGELSALVNNAG   87 (234)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            887777666655443  6777776655

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=90.74  E-value=2.8  Score=36.54  Aligned_cols=83  Identities=17%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.              +++-..   ...+. +..|.|
T Consensus        32 k~vlVTGas~gIG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~   90 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFAR-RGARLVL-SDVDQ--PALEQAV--------------NGLRGQ---GFDAHGVVCDVR   90 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCceEEEEccCC
Confidence            3699999999999999998875 5788665 44321  1111110              111110   01222 456889


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+=..|
T Consensus        91 d~~~v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           91 HLDEMVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            998888888777654  7888887765

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=90.70  E-value=0.66  Score=39.83  Aligned_cols=77  Identities=16%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      +|.|+|++|.+|+.+++.+.+ .+.+++. +++..  ...                  .+.+.+    .... +..|.+.
T Consensus        29 ~vlVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~------------------~~~~~~----~~~~~~~~Dv~~   82 (260)
T 3gem_A           29 PILITGASQRVGLHCALRLLE-HGHRVII-SYRTE--HAS------------------VTELRQ----AGAVALYGDFSC   82 (260)
T ss_dssp             CEEESSTTSHHHHHHHHHHHH-TTCCEEE-EESSC--CHH------------------HHHHHH----HTCEEEECCTTS
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeCCh--HHH------------------HHHHHh----cCCeEEECCCCC
Confidence            689999999999999998875 4777664 44321  110                  011110    1222 3457888


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      ++...+.+..+.+.  ++.+|+=..|
T Consensus        83 ~~~v~~~~~~~~~~~g~iD~lv~nAg  108 (260)
T 3gem_A           83 ETGIMAFIDLLKTQTSSLRAVVHNAS  108 (260)
T ss_dssp             HHHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            88887777766654  5778775554

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=90.70  E-value=1.6  Score=36.53  Aligned_cols=33  Identities=21%  Similarity=0.163  Sum_probs=27.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +.+|.|+|++|.+|+.+++.+.+..+.+++...
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~   36 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTA   36 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEe
Confidence            457999999999999999998864678877543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=90.67  E-value=0.74  Score=38.75  Aligned_cols=82  Identities=22%  Similarity=0.287  Sum_probs=50.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      +.++.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++               .+.+.     ..+. +..|.
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~-----~~~~~~~~D~   58 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVE-RGHQVSM-MGRRY--QRLQQQ---------------ELLLG-----NAVIGIVADL   58 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH---------------HHHHG-----GGEEEEECCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHhc-----CCceEEECCC
Confidence            34799999999999999998875 5788664 44321  111111               01111     1122 45678


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      |.++...+.+..+.+.  ++.+|+=..|.
T Consensus        59 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~   87 (235)
T 3l6e_A           59 AHHEDVDVAFAAAVEWGGLPELVLHCAGT   87 (235)
T ss_dssp             TSHHHHHHHHHHHHHHHCSCSEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence            8888887777766553  67777765543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=90.67  E-value=0.19  Score=45.17  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=25.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ++||+|+|+ |.+|..++..+....-+.-+..+|.
T Consensus         6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di   39 (317)
T 3d0o_A            6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL   39 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            479999997 9999999988776543333446774

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=90.65  E-value=0.28  Score=43.67  Aligned_cols=31  Identities=19%  Similarity=0.215  Sum_probs=24.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      -+|.|+|++|.+|+.+++.+. ..+.++++..
T Consensus       157 ~~vlI~Ga~g~iG~~~~~~a~-~~G~~V~~~~  187 (345)
T 2j3h_A          157 ETVYVSAASGAVGQLVGQLAK-MMGCYVVGSA  187 (345)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEe
Confidence            479999999999999998766 4577876543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=90.64  E-value=3.1  Score=34.78  Aligned_cols=84  Identities=21%  Similarity=0.266  Sum_probs=51.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.              +++.+.   ..... +..|.+
T Consensus        10 k~vlITGas~giG~~~a~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~~   68 (253)
T 3qiv_A           10 KVGIVTGSGGGIGQAYAEALAR-EGAAVVV-ADINA--EAAEAVA--------------KQIVAD---GGTAISVAVDVS   68 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCEEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEE-EcCCH--HHHHHHH--------------HHHHhc---CCcEEEEEccCC
Confidence            4689999999999999999875 5788664 44421  1111111              111110   00111 346788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      .++.....+..+.+.  ++.+|+=..|.
T Consensus        69 ~~~~~~~~~~~~~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           69 DPESAKAMADRTLAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888887777766554  78888876654

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=90.59  E-value=2.9  Score=35.51  Aligned_cols=82  Identities=11%  Similarity=0.144  Sum_probs=51.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (257)
                      .++.|+|++|.+|+.+++.+.+ .+.+++...++..  ....++               .+.+.+    ...+   +..|
T Consensus         5 k~vlVTGas~gIG~aia~~l~~-~G~~vv~~~~r~~--~~~~~~---------------~~~~~~----~~~~~~~~~~D   62 (258)
T 3oid_A            5 KCALVTGSSRGVGKAAAIRLAE-NGYNIVINYARSK--KAALET---------------AEEIEK----LGVKVLVVKAN   62 (258)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHT----TTCCEEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHh----cCCcEEEEEcC
Confidence            4689999999999999998874 6888876555421  111111               011111    1222   3457


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .|.++...+.+..+.+.  ++.+|+=..|
T Consensus        63 v~~~~~v~~~~~~~~~~~g~id~lv~nAg   91 (258)
T 3oid_A           63 VGQPAKIKEMFQQIDETFGRLDVFVNNAA   91 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88888888877776553  6788876554

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=90.57  E-value=1.7  Score=37.48  Aligned_cols=30  Identities=30%  Similarity=0.377  Sum_probs=25.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus        19 k~vlVTGasggIG~~la~~l~~-~G~~V~~~   48 (303)
T 1yxm_A           19 QVAIVTGGATGIGKAIVKELLE-LGSNVVIA   48 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEE
Confidence            5799999999999999998875 57886654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=90.53  E-value=0.55  Score=40.38  Aligned_cols=86  Identities=14%  Similarity=0.098  Sum_probs=48.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHH-HHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLT-MVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~-~~l~~~~~~~~~DVvIDF  113 (257)
                      .+|.|+|+ |++|..-++.+.+. +.+++ ++++.. ..++..+..   ..++.. ...++ +.+      ..+|.||-.
T Consensus        32 k~VLVVGg-G~va~~ka~~Ll~~-GA~Vt-Vvap~~-~~~l~~l~~---~~~i~~i~~~~~~~dL------~~adLVIaA   98 (223)
T 3dfz_A           32 RSVLVVGG-GTIATRRIKGFLQE-GAAIT-VVAPTV-SAEINEWEA---KGQLRVKRKKVGEEDL------LNVFFIVVA   98 (223)
T ss_dssp             CCEEEECC-SHHHHHHHHHHGGG-CCCEE-EECSSC-CHHHHHHHH---TTSCEEECSCCCGGGS------SSCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEE-EECCCC-CHHHHHHHH---cCCcEEEECCCCHhHh------CCCCEEEEC
Confidence            58999996 99999999988754 55554 455432 223333332   122322 12222 223      368888877


Q ss_pred             CChHhHHHHHHHHHHcCCCeE
Q 025154          114 TDASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      |.-+.....+..+.+.|+++-
T Consensus        99 T~d~~~N~~I~~~ak~gi~VN  119 (223)
T 3dfz_A           99 TNDQAVNKFVKQHIKNDQLVN  119 (223)
T ss_dssp             CCCTHHHHHHHHHSCTTCEEE
T ss_pred             CCCHHHHHHHHHHHhCCCEEE
Confidence            754444444444445776543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=90.50  E-value=4.3  Score=34.77  Aligned_cols=84  Identities=15%  Similarity=0.133  Sum_probs=51.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .++.|+|++|.+|+.+++.+.+ .+.+++.. ++..  ....+..           ..+.+...     ..+. +..|.|
T Consensus        28 k~~lVTGas~GIG~aia~~l~~-~G~~V~~~-~r~~--~~~~~~~-----------~~~~~~~~-----~~~~~~~~Dv~   87 (277)
T 4fc7_A           28 KVAFITGGGSGIGFRIAEIFMR-HGCHTVIA-SRSL--PRVLTAA-----------RKLAGATG-----RRCLPLSMDVR   87 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEE-ESCH--HHHHHHH-----------HHHHHHHS-----SCEEEEECCTT
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHHH-----------HHHHHhcC-----CcEEEEEcCCC
Confidence            4689999999999999998874 57877653 4321  1111110           00011111     1222 345888


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+=..|
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lv~nAg  114 (277)
T 4fc7_A           88 APPAVMAAVDQALKEFGRIDILINCAA  114 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            888888887777655  7888886655

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=90.49  E-value=1.4  Score=41.80  Aligned_cols=138  Identities=16%  Similarity=0.151  Sum_probs=82.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcC--------------CCCCCeeeecCHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDM--------------EQPLEIPVMSDLT   95 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~--------------~~~~gv~v~~dl~   95 (257)
                      -.||+|-| .|.+|+..++.+. +.+.+++++.|+.     ..|-|..++...              ..+.+.... +.+
T Consensus       235 Gk~vaVQG-~GnVG~~aa~~L~-e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~-~~~  311 (450)
T 4fcc_A          235 GMRVSVSG-SGNVAQYAIEKAM-EFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL-EGQ  311 (450)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE-ETC
T ss_pred             CCEEEEeC-CChHHHHHHHHHH-hcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe-cCc
Confidence            36899999 5999999999876 5799999988743     234443332100              000122221 224


Q ss_pred             HHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCceEEEccCchH---HH
Q 025154           96 MVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GS  169 (257)
Q Consensus        96 ~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT-G-~s~e~~~~L~~~a~~~gipvl~spNfSl---Gv  169 (257)
                      +++.     .++||++=+.. ..-..+++....++|+.+|++-- + .++|..+.|   .++   .|+|+|-+..   ||
T Consensus       312 ~i~~-----~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA~~iL---~~r---GIl~~PD~~aNAGGV  380 (450)
T 4fcc_A          312 QPWS-----VPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELF---QQA---GVLFAPGKAANAGGV  380 (450)
T ss_dssp             CGGG-----SCCSEEEECSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHH---HHT---TCEEECHHHHTTHHH
T ss_pred             cccc-----CCccEEeeccccccccHHHHHHHHhcCceEEecCCCCCCCHHHHHHH---HHC---CCEEEChHHhcCccH
Confidence            4554     48999998764 34446888888889999998743 2 345443333   233   5677776653   55


Q ss_pred             HH-HHHHHHHhcCCCCCe
Q 025154          170 IL-LQQAAISASFHYKNV  186 (257)
Q Consensus       170 nl-l~~~a~~l~~~~~Di  186 (257)
                      .. -.+..+-+..+.|+-
T Consensus       381 i~S~~E~~qn~~~~~w~~  398 (450)
T 4fcc_A          381 ATSGLEMAQNAARLGWKA  398 (450)
T ss_dssp             HHHHHHHHHHHHTCCCCH
T ss_pred             hhhHHHHhhhcccCCCCH
Confidence            43 123344444455544

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=90.49  E-value=0.22  Score=44.18  Aligned_cols=97  Identities=13%  Similarity=0.111  Sum_probs=50.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e--cCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M--SDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~--~dl~~~l~~~~~~~~~DVvID  112 (257)
                      -+|.|+|++|.+|...++.+.. .+.++++...+.. ..+...-.|.    ...+ +  .++.+.+.+...+..+|++||
T Consensus       142 ~~VlV~Ga~g~iG~~~~~~a~~-~Ga~Vi~~~~~~~-~~~~~~~~Ga----~~~~~~~~~~~~~~~~~~~~~~g~Dvvid  215 (325)
T 3jyn_A          142 EIILFHAAAGGVGSLACQWAKA-LGAKLIGTVSSPE-KAAHAKALGA----WETIDYSHEDVAKRVLELTDGKKCPVVYD  215 (325)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-HTCEEEEEESSHH-HHHHHHHHTC----SEEEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHHHHcCC----CEEEeCCCccHHHHHHHHhCCCCceEEEE
Confidence            4799999889999999987664 5778776553211 0011000110    0111 1  122222221111235788888


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ++-.+.....+......|.=+++|.+
T Consensus       216 ~~g~~~~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          216 GVGQDTWLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             SSCGGGHHHHHTTEEEEEEEEECCCT
T ss_pred             CCChHHHHHHHHHhcCCCEEEEEecC
Confidence            87655444444444455555556654

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=90.47  E-value=2.7  Score=35.64  Aligned_cols=84  Identities=17%  Similarity=0.233  Sum_probs=51.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++....+..  ....+.              .+++.+.   ..... +..|++
T Consensus        27 k~vlVTGas~gIG~~la~~l~~-~G~~v~i~~~r~~--~~~~~~--------------~~~l~~~---~~~~~~~~~Dl~   86 (267)
T 4iiu_A           27 RSVLVTGASKGIGRAIARQLAA-DGFNIGVHYHRDA--AGAQET--------------LNAIVAN---GGNGRLLSFDVA   86 (267)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH--------------HHHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCch--HHHHHH--------------HHHHHhc---CCceEEEEecCC
Confidence            3699999999999999998875 5788765554321  011110              0111110   01222 345788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus        87 ~~~~~~~~~~~~~~~~g~id~li~nAg  113 (267)
T 4iiu_A           87 NREQCREVLEHEIAQHGAWYGVVSNAG  113 (267)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEECCC
Confidence            888887777766554  6777776655

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=90.47  E-value=0.45  Score=41.22  Aligned_cols=102  Identities=21%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             ccccccccc--CccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee
Q 025154           13 HHISQNVKA--KRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (257)
Q Consensus        13 ~~~~~~~~~--~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v   90 (257)
                      ||-|+-|.+  ++..+.+-.+.. ...+.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.          
T Consensus         5 ~~~~~~~~~~~~~~~~~~m~~~~-~k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~----------   69 (272)
T 4dyv_A            5 HHHSSGVDLGTENLYFQSMSKTG-KKIAIVTGAGSGVGRAVAVALAG-AGYGVAL-AGRRL--DALQETA----------   69 (272)
T ss_dssp             ------------------------CCEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH----------
T ss_pred             ccccccccCCcceeehhhhcCCC-CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----------
Confidence            444554432  333333322222 24578899999999999998875 5787664 44321  1111110          


Q ss_pred             ecCHHHHHhccccCCCcc-EEEEcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154           91 MSDLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus        91 ~~dl~~~l~~~~~~~~~D-VvIDFT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                           +.+.     .++. +..|.|.++...+.+..+.+.  ++.+|+=..|
T Consensus        70 -----~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg  111 (272)
T 4dyv_A           70 -----AEIG-----DDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAG  111 (272)
T ss_dssp             -----HHHT-----SCCEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             -----HHhC-----CCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence                 1111     1222 456888888888877766554  7888876554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=90.46  E-value=0.43  Score=42.87  Aligned_cols=31  Identities=32%  Similarity=0.417  Sum_probs=24.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      -+|.|+|++|.+|..+++.+. ..+.++++..
T Consensus       169 ~~VlV~Gg~g~iG~~~~~~a~-~~Ga~Vi~~~  199 (353)
T 4dup_A          169 ESVLIHGGTSGIGTTAIQLAR-AFGAEVYATA  199 (353)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHH-HcCCEEEEEe
Confidence            379999888999999998766 5688876654

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=90.40  E-value=0.54  Score=44.18  Aligned_cols=61  Identities=20%  Similarity=0.107  Sum_probs=42.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+... ..         ..+.....++++++.      .+|+|+-..
T Consensus       156 gktvGIIG-lG~IG~~vA~~l~-~~G~~V~~-yd~~~~-~~---------~~~~~~~~sl~ell~------~aDvV~lhv  216 (416)
T 3k5p_A          156 GKTLGIVG-YGNIGSQVGNLAE-SLGMTVRY-YDTSDK-LQ---------YGNVKPAASLDELLK------TSDVVSLHV  216 (416)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECTTCC-CC---------BTTBEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEe-eCHHHHHHHHHHH-HCCCEEEE-ECCcch-hc---------ccCcEecCCHHHHHh------hCCEEEEeC
Confidence            35899999 6999999999876 45888764 664310 00         112334578999996      699888554

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=90.38  E-value=0.26  Score=44.01  Aligned_cols=32  Identities=19%  Similarity=0.156  Sum_probs=25.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      .-+|.|+|++|.+|+.+++.+. ..+.++++..
T Consensus       167 g~~vlV~Gasg~iG~~~~~~a~-~~G~~Vi~~~  198 (343)
T 2eih_A          167 GDDVLVMAAGSGVSVAAIQIAK-LFGARVIATA  198 (343)
T ss_dssp             TCEEEECSTTSTTHHHHHHHHH-HTTCEEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHH-HCCCEEEEEe
Confidence            3589999999999999998776 4577877643

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=90.36  E-value=0.97  Score=38.88  Aligned_cols=53  Identities=25%  Similarity=0.211  Sum_probs=25.1

Q ss_pred             ccccccccccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEE
Q 025154           12 MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (257)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg   65 (257)
                      -||-.++-+....++..+-..-...++.|+|++|.+|+.+++.+++ .+.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~m~~l~gk~vlVTGas~gIG~aia~~la~-~G~~V~~   57 (266)
T 3uxy_A            5 HHHSSGVDLGTENLYFQSMQGFEGKVALVTGAAGGIGGAVVTALRA-AGARVAV   57 (266)
T ss_dssp             ---------------------CTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEE
T ss_pred             ccCCCCCCCCCCCcchhhhhCCCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEE
Confidence            3455555555444444332222234689999999999999998875 5777664

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=90.36  E-value=1.9  Score=36.66  Aligned_cols=80  Identities=21%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.. ++..  ....++.               +.+.     .... +..|.+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~-~r~~--~~~~~~~---------------~~~~-----~~~~~~~~D~~   63 (260)
T 1nff_A            8 KVALVSGGARGMGASHVRAMVA-EGAKVVFG-DILD--EEGKAMA---------------AELA-----DAARYVHLDVT   63 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ESCH--HHHHHHH---------------HHTG-----GGEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHHH---------------HHhh-----cCceEEEecCC
Confidence            4699999999999999998875 57887653 4321  1111110               1111     0122 345788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+=..|
T Consensus        64 ~~~~v~~~~~~~~~~~g~iD~lv~~Ag   90 (260)
T 1nff_A           64 QPAQWKAAVDTAVTAFGGLHVLVNNAG   90 (260)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888877777665543  6888876554

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.32  E-value=0.2  Score=44.31  Aligned_cols=87  Identities=15%  Similarity=0.187  Sum_probs=51.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--e-ecC---HHHHHhccccCCCccE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--V-MSD---LTMVLGSISQSKARAV  109 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v-~~d---l~~~l~~~~~~~~~DV  109 (257)
                      -+|.|+|++|.+|...++.+. ..+.++++.....    .. +++   .++|..  + +.+   +.+.+      ..+|+
T Consensus       154 ~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~~~~----~~-~~~---~~lGa~~~i~~~~~~~~~~~~------~g~D~  218 (321)
T 3tqh_A          154 DVVLIHAGAGGVGHLAIQLAK-QKGTTVITTASKR----NH-AFL---KALGAEQCINYHEEDFLLAIS------TPVDA  218 (321)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEECHH----HH-HHH---HHHTCSEEEETTTSCHHHHCC------SCEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEeccc----hH-HHH---HHcCCCEEEeCCCcchhhhhc------cCCCE
Confidence            379999988999999998765 5688888765321    11 111   012221  1 222   33333      37999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      +||++-.+.....++.....|.=+.+|.
T Consensus       219 v~d~~g~~~~~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          219 VIDLVGGDVGIQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             EEESSCHHHHHHHGGGEEEEEEEEECCS
T ss_pred             EEECCCcHHHHHHHHhccCCCEEEEeCC
Confidence            9999976666444443344454444543

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=90.28  E-value=2.5  Score=35.55  Aligned_cols=30  Identities=27%  Similarity=0.370  Sum_probs=25.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus        16 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~   45 (247)
T 1uzm_A           16 RSVLVTGGNRGIGLAIAQRLAA-DGHKVAVT   45 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            4799999999999999998875 57887654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=90.27  E-value=0.34  Score=43.58  Aligned_cols=95  Identities=13%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eec--CH--HHHHhccccCC-CccEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMS--DL--TMVLGSISQSK-ARAVV  110 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~--dl--~~~l~~~~~~~-~~DVv  110 (257)
                      +|.|.|++|.+|...++++. .-+.++++++++.....+..+++   ..+|.. +.+  +.  +++. ++.... .+|++
T Consensus       170 ~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~---~~lGa~~vi~~~~~~~~~~~-~~~~~~~~~Dvv  244 (357)
T 1zsy_A          170 SVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRL---KSLGAEHVITEEELRRPEMK-NFFKDMPQPRLA  244 (357)
T ss_dssp             EEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHH---HHTTCSEEEEHHHHHSGGGG-GTTSSSCCCSEE
T ss_pred             EEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHH---HhcCCcEEEecCcchHHHHH-HHHhCCCCceEE
Confidence            79999999999999998765 45888888886531100011111   122321 111  10  1111 111111 48999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      ||++-.+.....+..+...|.=+.+|
T Consensus       245 id~~g~~~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          245 LNCVGGKSSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             EESSCHHHHHHHHTTSCTTCEEEECC
T ss_pred             EECCCcHHHHHHHHhhCCCCEEEEEe
Confidence            99987655555444434455555555

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=90.27  E-value=3.2  Score=35.15  Aligned_cols=84  Identities=14%  Similarity=0.148  Sum_probs=50.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.              +++.+.   ...+. +..|.+
T Consensus        30 k~vlITGas~gIG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~~   88 (262)
T 3rkr_A           30 QVAVVTGASRGIGAAIARKLGS-LGARVVL-TARDV--EKLRAVE--------------REIVAA---GGEAESHACDLS   88 (262)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCEEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHh---CCceeEEEecCC
Confidence            4799999999999999998875 5788664 44321  1111110              111110   01122 346788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      .++.....+..+.+.  ++.+|+=..|.
T Consensus        89 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A           89 HSDAIAAFATGVLAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            888887777665443  58888766654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=90.25  E-value=1.9  Score=36.32  Aligned_cols=84  Identities=21%  Similarity=0.239  Sum_probs=48.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.......  ....++.              +++-..   ..+.. +..|++
T Consensus        22 k~vlItGasggiG~~la~~l~~-~G~~v~~~~r~~~--~~~~~~~--------------~~l~~~---~~~~~~~~~D~~   81 (274)
T 1ja9_A           22 KVALTTGAGRGIGRGIAIELGR-RGASVVVNYGSSS--KAAEEVV--------------AELKKL---GAQGVAIQADIS   81 (274)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCch--HHHHHHH--------------HHHHhc---CCcEEEEEecCC
Confidence            5799999999999999999875 4788776432120  1111110              011100   01122 345778


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~d~vi~~Ag  108 (274)
T 1ja9_A           82 KPSEVVALFDKAVSHFGGLDFVMSNSG  108 (274)
T ss_dssp             SHHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            887777666655443  6777765544

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=90.23  E-value=0.56  Score=42.32  Aligned_cols=94  Identities=20%  Similarity=0.176  Sum_probs=50.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--ee-e--cCHHHHHhccccCCCccEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PV-M--SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v-~--~dl~~~l~~~~~~~~~DVv  110 (257)
                      -+|.|+|++|.+|..+++.+.. .+.++++...+.   .....+.    .+|.  .+ +  .++.+.+.+.. ...+|++
T Consensus       165 ~~VlV~Ga~G~iG~~~~q~a~~-~Ga~Vi~~~~~~---~~~~~~~----~~Ga~~~~~~~~~~~~~~~~~~~-~~g~D~v  235 (362)
T 2c0c_A          165 KKVLVTAAAGGTGQFAMQLSKK-AKCHVIGTCSSD---EKSAFLK----SLGCDRPINYKTEPVGTVLKQEY-PEGVDVV  235 (362)
T ss_dssp             CEEEETTTTBTTHHHHHHHHHH-TTCEEEEEESSH---HHHHHHH----HTTCSEEEETTTSCHHHHHHHHC-TTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHh-CCCEEEEEECCH---HHHHHHH----HcCCcEEEecCChhHHHHHHHhc-CCCCCEE
Confidence            3799999889999999987664 578876544221   0111111    1121  11 1  23333332110 1358999


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ||++........+..+...|.=+.+|..
T Consensus       236 id~~g~~~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          236 YESVGGAMFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             EECSCTHHHHHHHHHEEEEEEEEECCCG
T ss_pred             EECCCHHHHHHHHHHHhcCCEEEEEeCC
Confidence            9988664444444444445554555543

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=90.21  E-value=0.84  Score=39.27  Aligned_cols=81  Identities=17%  Similarity=0.225  Sum_probs=49.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .++.|+|++|.+|+.+++.+.+ .+..++. +++..  ....                  ++.+++  ...+. +..|.|
T Consensus        28 k~vlVTGas~gIG~aia~~la~-~G~~V~~-~~r~~--~~~~------------------~~~~~~--~~~~~~~~~Dv~   83 (266)
T 3grp_A           28 RKALVTGATGGIGEAIARCFHA-QGAIVGL-HGTRE--DKLK------------------EIAADL--GKDVFVFSANLS   83 (266)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHH------------------HHHHHH--CSSEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHH------------------HHHHHh--CCceEEEEeecC
Confidence            3689999999999999998875 5777654 34321  1111                  111110  01222 335778


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      .++.....+..+.+.  ++.+|+=..|.
T Consensus        84 d~~~v~~~~~~~~~~~g~iD~lvnnAg~  111 (266)
T 3grp_A           84 DRKSIKQLAEVAEREMEGIDILVNNAGI  111 (266)
T ss_dssp             SHHHHHHHHHHHHHHHTSCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            888777777666554  67888766553

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=90.20  E-value=2.8  Score=35.72  Aligned_cols=84  Identities=20%  Similarity=0.235  Sum_probs=51.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++......   .+..+              .+.+.+.+.  ...+. +..|++
T Consensus        30 k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~---~~~~~--------------~~~~~~~~~--~~~~~~~~~D~~   89 (271)
T 4iin_A           30 KNVLITGASKGIGAEIAKTLAS-MGLKVWINYRSN---AEVAD--------------ALKNELEEK--GYKAAVIKFDAA   89 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSC---HHHHH--------------HHHHHHHHT--TCCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCC---HHHHH--------------HHHHHHHhc--CCceEEEECCCC
Confidence            4799999999999999999875 578877544322   11100              011111110  01222 345788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+=..|
T Consensus        90 ~~~~v~~~~~~~~~~~g~id~li~nAg  116 (271)
T 4iin_A           90 SESDFIEAIQTIVQSDGGLSYLVNNAG  116 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            888888777766554  7888876655

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=90.17  E-value=0.58  Score=42.27  Aligned_cols=61  Identities=23%  Similarity=0.266  Sum_probs=41.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| +|+||+.+++.+. .-++++. ++|+... ....       .. + .+.++++++.      .+|+|+...
T Consensus       146 g~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~d~~~~-~~~~-------~~-~-~~~~l~ell~------~aDvV~~~~  206 (331)
T 1xdw_A          146 NCTVGVVG-LGRIGRVAAQIFH-GMGATVI-GEDVFEI-KGIE-------DY-C-TQVSLDEVLE------KSDIITIHA  206 (331)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHH-HTTCEEE-EECSSCC-CSCT-------TT-C-EECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCcc-HHHH-------hc-c-ccCCHHHHHh------hCCEEEEec
Confidence            46899999 5999999999876 4688865 4665321 1110       11 2 2458999886      689988754

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=90.14  E-value=0.85  Score=40.97  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=25.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      -+|.|+|++|.+|+.+++.+. ..+.++++..
T Consensus       172 ~~vlV~GasggiG~~~~~~a~-~~Ga~Vi~~~  202 (351)
T 1yb5_A          172 ESVLVHGASGGVGLAACQIAR-AYGLKILGTA  202 (351)
T ss_dssp             CEEEEETCSSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHH-HCCCEEEEEe
Confidence            379999999999999998776 4678876543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=90.09  E-value=0.52  Score=43.08  Aligned_cols=61  Identities=26%  Similarity=0.261  Sum_probs=41.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|+||+.+++.+. .-++++.+ +|+..  ..  ..     ..++ -+.++++++.      .+|+|+-..
T Consensus       148 gktvgIiG-lG~IG~~vA~~l~-~~G~~V~~-~d~~~--~~--~~-----~~~~-~~~~l~ell~------~aDvV~l~~  208 (343)
T 2yq5_A          148 NLTVGLIG-VGHIGSAVAEIFS-AMGAKVIA-YDVAY--NP--EF-----EPFL-TYTDFDTVLK------EADIVSLHT  208 (343)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSC--CG--GG-----TTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEe-cCHHHHHHHHHHh-hCCCEEEE-ECCCh--hh--hh-----hccc-cccCHHHHHh------cCCEEEEcC
Confidence            35899999 6999999999876 45888764 66532  11  11     1122 2348999986      699988654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=90.05  E-value=1.7  Score=36.22  Aligned_cols=82  Identities=17%  Similarity=0.119  Sum_probs=48.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT  114 (257)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++. +++..  ....++.               +.+..   ...+. +..|++
T Consensus         7 k~vlVtGasggiG~~~a~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~~---~~~~~~~~~D~~   64 (251)
T 1zk4_A            7 KVAIITGGTLGIGLAIATKFVE-EGAKVMI-TGRHS--DVGEKAA---------------KSVGT---PDQIQFFQHDSS   64 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH---------------HHHCC---TTTEEEEECCTT
T ss_pred             cEEEEeCCCChHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHhhc---cCceEEEECCCC
Confidence            4799999999999999999875 5788765 34321  0111100               11110   00222 345788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus        65 ~~~~~~~~~~~~~~~~~~id~li~~Ag   91 (251)
T 1zk4_A           65 DEDGWTKLFDATEKAFGPVSTLVNNAG   91 (251)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            887777666655432  5777776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1diha1	162	c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re	5e-10
d1yl7a1	135	c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate re	2e-06
d1vm6a3	128	c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate red	4e-04
d1yl7a2	109	d.81.1.3 (A:106-214) Dihydrodipicolinate reductase	4e-04

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 54.8 bits (131), Expect = 5e-10
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 11/163 (6%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS 92
            +NI+V I GA   +GR  + A     G+++  A++            ++    +  V  
Sbjct: 2   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 61

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152
             ++     +      V IDFT      +++      G   V+           A+    
Sbjct: 62  QSSL----DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAA 117

Query: 153 DKASMGCLIAPTLSIGS-----ILLQQAAISASFHYKNVEIVE 190
               +  + A   S+             +   S  +   ++++
Sbjct: 118 AD--IAIVFAANFSMTFANGAVRSALWLSGKESGLFDMRDVLD 158

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 32/159 (20%)

Query: 37  KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
           +V + GA  ++G   V AV  A  + ++  +D+      +                    
Sbjct: 1   RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLL-------------------- 40

Query: 97  VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA- 155
                       VVIDFT    V  N++     G+ +VV       E    + ++     
Sbjct: 41  ------TDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKP 94

Query: 156 SMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
           +   LIAP  +       + +++ A         +E + 
Sbjct: 95  NTSVLIAPNFTSFVPGVLLAVRRIAERPGLTV-GLEPLL 132

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Length = 128

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 31/154 (20%)

Query: 37  KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
           K  I G    +G+  +  V   +G E+   +D                            
Sbjct: 2   KYGIVGYSGRMGQE-IQKVFSEKGHELVLKVD---------------------------- 32

Query: 97  VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156
            +  + +  +  VVIDF+    +   V     +    V+    ++ E +  L     +  
Sbjct: 33  -VNGVEELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVP 91

Query: 157 -MGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 189
            +        +IG++   +  +       + E V
Sbjct: 92  VVQAYSRTVFAIGALKAAEFLVGKDPGMYSFEEV 125

>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 109

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 166 SIGSILLQQAAISASFHYKNVEIVE 190
           +IG++L    A  A+  + + E++E
Sbjct: 1   AIGAVLSMHFAKQAARFFDSAEVIE 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	100.0
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	100.0
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	99.97
d1vm6a2	86	Dihydrodipicolinate reductase {Thermotoga maritima	99.94
d1yl7a2	109	Dihydrodipicolinate reductase {Mycobacterium tuber	99.93
d1diha2	110	Dihydrodipicolinate reductase {Escherichia coli [T	99.93
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	99.61
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	99.6
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	99.56
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	99.56
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	99.53
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	99.53
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	99.47
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	99.4
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	99.39
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.1
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.03
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.0
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	98.9
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.85
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.73
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	98.64
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.49
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.42
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.42
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.4
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	98.38
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.33
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.32
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.31
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	98.24
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	98.21
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	98.19
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.19
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.17
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	98.16
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	98.13
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.07
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.06
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.06
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	97.86
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.83
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.72
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.7
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.59
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.59
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.54
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.52
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.52
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.47
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.4
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.35
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.34
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.32
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.32
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	97.32
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.3
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.28
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.23
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.14
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.06
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.96
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.88
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.84
d1vjpa1	275	Hypothetical protein TM1419 {Thermotoga maritima [	96.81
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.56
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.54
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.43
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.38
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.3
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.21
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	96.2
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.14
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.11
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.1
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.08
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	96.07
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.02
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.96
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.94
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.91
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.89
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.87
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.82
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.77
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.75
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	95.72
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.7
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.65
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.44
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.42
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.4
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.34
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	95.33
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.33
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.28
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.25
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.25
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.15
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.98
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.9
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.83
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.79
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.79
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.78
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.72
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.69
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.65
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.6
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.54
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.47
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.4
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.38
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.25
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.02
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.99
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	93.83
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	93.71
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.41
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.36
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.27
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.23
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.22
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.08
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.02
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.0
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	92.95
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.84
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.83
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.82
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.81
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.8
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.66
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.61
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.6
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.54
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.53
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	92.43
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	92.31
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.12
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.07
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.07
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	91.99
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	91.99
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.94
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.94
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	91.92
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.75
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	91.71
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.5
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.38
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.35
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.2
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	91.13
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.03
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	91.03
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.01
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.99
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	90.97
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.73
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.6
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.56
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	90.52
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.49
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.3
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	90.14
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	90.11
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	90.07
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.94
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	89.93
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.84
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	89.71
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	89.53
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	89.26
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	88.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.85
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.8
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	88.76
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.44
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.27
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	88.14
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.1
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	88.02
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	87.81
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.55
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.38
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	87.25
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	87.19
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	86.86
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	86.86
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	86.76
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	86.76
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	86.67
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	86.62
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.59
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.58
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.33
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	86.32
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.08
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	85.85
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	85.79
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.76
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	85.67
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.65
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	85.26
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.22
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	85.07
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.92
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	84.88
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	84.86
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	84.8
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	84.53
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	84.47
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	84.46
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	84.39
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	84.38
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	84.35
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	84.24
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	84.17
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.1
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	83.84
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	83.77
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	83.7
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	83.59
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	83.58
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	83.47
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	83.44
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	83.37
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.34
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	83.19
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	82.92
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	82.49
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	82.46
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	82.13
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	82.07
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	82.03
d1ko7a1	129	HPr kinase/phoshatase HprK N-terminal domain {Stap	81.85
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	80.84
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	80.3
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	80.22

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.4e-42  Score=284.81  Aligned_cols=152  Identities=19%  Similarity=0.231  Sum_probs=133.8

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec---CCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      +++|||+|+||+|||||++++++.++++++|++++++   +..|.|.+++.+.. +.+++++++++++++      .+||
T Consensus         2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~-~~~~~~~~~~~~~~~------~~DV   74 (162)
T d1diha1           2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKD------DFDV   74 (162)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTT------SCSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccc-cCCceeeccHHHHhc------ccce
Confidence            5789999999999999999999999999999999995   35688999988874 789999999998885      7999


Q ss_pred             EEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH-HH----HHHHHHhcCCCC
Q 025154          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-LL----QQAAISASFHYK  184 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn-ll----~~~a~~l~~~~~  184 (257)
                      +||||+|+++.+++++|.++|+|+|+|||||+++|.+.|++++++  +|++||||||+|++ ++    +++++.+. .+|
T Consensus        75 iIDFs~p~~~~~~~~~a~~~~~~~ViGTTG~~~~~~~~i~~~a~~--ipi~~apN~SlGi~~~~~~~~~~~~~~~~-~~f  151 (162)
T d1diha1          75 FIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD--IAIVFAANFSMTFANGAVRSALWLSGKES-GLF  151 (162)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT--SCEEECSCCCHHHHHHHHHHHHHHTTCCS-SEE
T ss_pred             EEEeccHHHHHHHHHHHHhccceeEEecCCCcHHHHHHHHHHcCC--CCEEEEccccHHHHHHHHHHHHHHHHhhc-cCC
Confidence            999999999999999999999999999999999999999999999  99999999999984 32    23333333 356


Q ss_pred             C-eEEEeccCC
Q 025154          185 N-VEIVESRPN  194 (257)
Q Consensus       185 D-iEIiE~HH~  194 (257)
                      | +||+|+||-
T Consensus       152 d~~eI~E~HH~  162 (162)
T d1diha1         152 DMRDVLDLNNL  162 (162)
T ss_dssp             CHHHHTTGGGC
T ss_pred             CeeEEEecCCC
Confidence            7 599999993

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.3e-39  Score=264.17  Aligned_cols=131  Identities=21%  Similarity=0.254  Sum_probs=112.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      ||+|+||+||||+++++++.++++++|++++|..   .+.                  .....     .++||+||||+|
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~---~~~------------------~~~~~-----~~~DvvIDFS~p   54 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG---DPL------------------SLLTD-----GNTEVVIDFTHP   54 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT---CCT------------------HHHHT-----TTCSEEEECCCT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC---Cch------------------hhhcc-----ccCCEEEEcccH
Confidence            8999999999999999999999999999999852   222                  22232     479999999999


Q ss_pred             HhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHH-hhhcCceEEEccCchHHHHHHHHHHHHhcC---CCCCeEEEecc
Q 025154          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSIGSILLQQAAISASF---HYKNVEIVESR  192 (257)
Q Consensus       117 ~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~-a~~~gipvl~spNfSlGvnll~~~a~~l~~---~~~DiEIiE~H  192 (257)
                      +++.+++++|+++|+|+|+|||||+++|.+.|+++ ++.+++|+|||||||+|||++.++.+.+++   ++||+||+|.|
T Consensus        55 ~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~l~~~aa~~l~~~~diEiIe~h  134 (135)
T d1yl7a1          55 DVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLLAVRRIAERPGLTVGLEPLLDL  134 (135)
T ss_dssp             TTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHHHHHHGGGSCEEEESSGGGSCC
T ss_pred             HHHHHHHHHHHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHHHHHHHHHHHHHHhccccCCeeehhhc
Confidence            99999999999999999999999999999999985 333449999999999999986666555443   56899999999


Q ss_pred             C
Q 025154          193 P  193 (257)
Q Consensus       193 H  193 (257)
                      |
T Consensus       135 H  135 (135)
T d1yl7a1         135 H  135 (135)
T ss_dssp             C
T ss_pred             C
Confidence            9

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.3e-31  Score=213.42  Aligned_cols=123  Identities=18%  Similarity=0.179  Sum_probs=103.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+|+|++|||||++.+.+ ..+++++++.+|...                       .+.+      .++||+||||+
T Consensus         1 mki~i~G~~GrMG~~i~~~~-~~~~~~l~~~id~~~-----------------------~~~~------~~~DVvIDFS~   50 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNG-----------------------VEEL------DSPDVVIDFSS   50 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTE-----------------------EEEC------SCCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHH-hcCCCeEEEEECCCc-----------------------HHHh------ccCCEEEEecC
Confidence            79999999999999999866 567999999998531                       0112      37999999999


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCC---CCCeE-EEe
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNVE-IVE  190 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~---~~DiE-IiE  190 (257)
                      |+++.+++++|+++|+|+|+|||||+++|.+.|+++|++  +|++++||||+|++.+.++++.+...   +||+| |+|
T Consensus        51 p~~~~~~l~~~~~~~~p~ViGTTG~~~~~~~~i~~~ak~--~pv~~a~N~s~~~~~l~~~~~~~~~~~~~~~~~e~iie  127 (128)
T d1vm6a3          51 PEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE--VPVVQAYSRTVFAIGALKAAEFLVGKDPGMYSFEEVIF  127 (128)
T ss_dssp             GGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT--SEEEECSCTHHHHHHHHHHHHHHTTCCSEEECHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHhh--CCEEeeeccChHHHHHHHHHHHHHhhcCCCCCEEEEEe
Confidence            999999999999999999999999999999999999999  99999999999998766665554432   35554 444

>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=2.8e-27  Score=176.99  Aligned_cols=78  Identities=21%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             CchHHHHHHHHHHHHhcC--CCCCeEEEeccCCCCCCCCCccHHHHHHhhhccccCCCCCCCceeeeeecCCccee----
Q 025154          164 TLSIGSILLQQAAISASF--HYKNVEIVESRPNARVRYMTRTLISMQVCLRHIYLYPKFQNNNSFHTKRKLKIASS----  237 (257)
Q Consensus       164 NfSlGvnll~~~a~~l~~--~~~DiEIiE~HH~~K~DapSGTa~~l~~~~r~g~~~~r~~~~Igi~s~R~G~IvG~----  237 (257)
                      |||+|||++.++++.+.+  +.||+||+|.||++|+|+|||||++|+...         .++|+|+|+|.|+++|+    
T Consensus         1 NfSlGv~ll~~~~~~~~~~l~~~di~I~E~HH~~K~DaPSGTAl~l~~~i---------~~~i~i~S~R~g~~~G~H~v~   71 (86)
T d1vm6a2           1 NFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILLESAL---------GKSVPIHSLRVGGVPGDHVVV   71 (86)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCCSSCHHHHHHHHHT---------TSCCCEEEEECTTCCCEEEEE
T ss_pred             CccHHHHHHHHHHHHHHHhCcccCEEEehhhhhcCCCccchhHHHHHHHH---------HhhhhheeEEcCCCCEEEEEE
Confidence            999999998777655433  368999999999999999999999998653         24789999999999999    


Q ss_pred             eccCCcEEEEEee
Q 025154          238 IIGVGEILILSKI  250 (257)
Q Consensus       238 f~g~~E~iel~h~  250 (257)
                      |.+++|+|+|+|.
T Consensus        72 f~~~~E~i~i~H~   84 (86)
T d1vm6a2          72 FGNIGETIEIKHR   84 (86)
T ss_dssp             EECSSEEEEEEEE
T ss_pred             ecCCCcEEEEEEE
Confidence            8999999999996

>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=4.8e-27  Score=183.20  Aligned_cols=87  Identities=15%  Similarity=0.103  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEeccCCCCCCCCCccHHHHHHhhhc--------------ccc--CCCCCCCceeeee
Q 025154          166 SIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRH--------------IYL--YPKFQNNNSFHTK  229 (257)
Q Consensus       166 SlGvnll~~~a~~l~~~~~DiEIiE~HH~~K~DapSGTa~~l~~~~r~--------------g~~--~~r~~~~Igi~s~  229 (257)
                      |||||||+++++.+++++.|+||+|+||++|+|+|||||++|+....+              +..  ..+..++|+|+|+
T Consensus         1 SlGvnll~~l~~~aa~~~~dieI~E~HH~~K~DaPSGTAl~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~S~   80 (109)
T d1yl7a2           1 AIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAV   80 (109)
T ss_dssp             CHHHHHHHHHHHHHGGGCSEEEEEEEECTTCCEESCHHHHHHHHHHHHHTTTSCCCCCCCCEECTTTTCEEETTEEEEEE
T ss_pred             ChHHHHHHHHHHHHHhhCCCcEEEEcccccCCCCCchhHHHHHHHHHHhhcccccccceeEeccccccCCccCCceEEEE
Confidence            899999999999999888899999999999999999999999864321              111  1235678999999


Q ss_pred             ecCCccee----eccCCcEEEEEeecC
Q 025154          230 RKLKIASS----IIGVGEILILSKILP  252 (257)
Q Consensus       230 R~G~IvG~----f~g~~E~iel~h~~~  252 (257)
                      |+|+++|+    |.+++|+|+|+|.--
T Consensus        81 R~g~v~g~H~V~F~~~~E~i~l~H~a~  107 (109)
T d1yl7a2          81 RLAGLVAHQEVLFGTEGETLTIRHDSL  107 (109)
T ss_dssp             ECTTCCEEEEEEEEETTEEEEEEEEEC
T ss_pred             ecCCCcEEEEEEEcCCCcEEEEEEEec
Confidence            99999999    999999999999753

>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.1e-26  Score=181.48  Aligned_cols=86  Identities=20%  Similarity=0.256  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhcC---CCCCeEEEeccCCCCCCCCCccHHHHHHhh---------------hccccCCCCCCCceeee
Q 025154          167 IGSILLQQAAISASF---HYKNVEIVESRPNARVRYMTRTLISMQVCL---------------RHIYLYPKFQNNNSFHT  228 (257)
Q Consensus       167 lGvnll~~~a~~l~~---~~~DiEIiE~HH~~K~DapSGTa~~l~~~~---------------r~g~~~~r~~~~Igi~s  228 (257)
                      +|||||.++++.+++   ++||+||+|+||++|+|+|||||++|+...               +.+..+.|.+++|+|+|
T Consensus         1 IGvnll~~l~~~~a~~l~~~~dieI~E~HH~~K~DaPSGTAl~lae~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~S   80 (110)
T d1diha2           1 VGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFAT   80 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCCCSCCTTCEEEEE
T ss_pred             ChHHHHHHHHHHHHHhcccccChhhHHHHHhcCCCCCchHHHHHHHHHHHhhCccccccccccccccccCCCCCccceEE
Confidence            699997776555443   578999999999999999999999997642               34445678889999999


Q ss_pred             eecCCccee----eccCCcEEEEEeecC
Q 025154          229 KRKLKIASS----IIGVGEILILSKILP  252 (257)
Q Consensus       229 ~R~G~IvG~----f~g~~E~iel~h~~~  252 (257)
                      +|+|+++|+    |.+++|+|||+|.--
T Consensus        81 ~R~g~v~G~H~V~f~~~~E~i~i~H~A~  108 (110)
T d1diha2          81 VRAGDIVGEHTAMFADIGERLEITHKAS  108 (110)
T ss_dssp             EECTTCCEEEEEEEEETTEEEEEEEEEC
T ss_pred             eecCCccEEEEEEecCCCCEEEEEEEeC
Confidence            999999999    999999999999753

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=2.7e-15  Score=124.00  Aligned_cols=135  Identities=11%  Similarity=0.157  Sum_probs=108.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +|||||+|+ |+||+.+++.+...++++|+|++|... ..+....-.+.  +....+|+|+++++++    .++|+|+.+
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~----~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY--PESTKIHGSYESLLED----PEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC--CTTCEEESSHHHHHHC----TTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccc--ccceeecCcHHHhhhc----cccceeeec
Confidence            589999995 999999999999899999999998641 01111221121  2345689999999975    689999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHH
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAA  176 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a  176 (257)
                      |.+..+.+++..|+++|+|+++++| +.+.++.++|.++++++++.++++-|+  +-.+..++++.
T Consensus        74 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~r~~~~~~~~k~li  139 (184)
T d1ydwa1          74 LPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHPQEACMVREFA  139 (184)
T ss_dssp             CCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGCHHHHHHHHHT
T ss_pred             ccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEEEeeecChHHHHHHHHH
Confidence            9999999999999999999999999 688999999999999999998877766  34444455544

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.1e-14  Score=118.19  Aligned_cols=121  Identities=14%  Similarity=0.238  Sum_probs=102.3

Q ss_pred             CceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      +|||||+| +|.||+. +...+...++++|++++|+..  ..+..+.   ..++++.+++++++++      ++|+|+.+
T Consensus         1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~l~~------~~D~V~I~   68 (164)
T d1tlta1           1 KLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTR--AKALPIC---ESWRIPYADSLSSLAA------SCDAVFVH   68 (164)
T ss_dssp             CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSC--TTHHHHH---HHHTCCBCSSHHHHHT------TCSEEEEC
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechh--Hhhhhhh---hcccccccccchhhhh------hccccccc
Confidence            58999999 5999976 788888889999999999652  1222332   2457888999999885      79999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      |+|..+.+++..|+++|+||++.+| +.+.++.++|.++|+++|+.+.+.-|+-.
T Consensus        69 tp~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~  123 (164)
T d1tlta1          69 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRF  123 (164)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGG
T ss_pred             ccchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEEEEecccc
Confidence            9999999999999999999999998 77889999999999999998888776654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.56  E-value=1.5e-14  Score=118.73  Aligned_cols=121  Identities=14%  Similarity=0.065  Sum_probs=99.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +|||+|+| +|+||+.+++.+.+.++++|++++++...  . .      ...++..+++++++++      ++|+|+.+|
T Consensus         3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~--~-~------~~~~~~~~~~~~~~~~------~~D~Vvi~t   66 (170)
T d1f06a1           3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRAT--L-D------TKTPVFDVADVDKHAD------DVDVLFLCM   66 (170)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSC--C-S------SSSCEEEGGGGGGTTT------TCSEEEECS
T ss_pred             cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEecccc--c-c------cccccccchhhhhhcc------ccceEEEeC
Confidence            68999999 59999999999999999999999996421  1 0      1345666777777764      799999999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      .+..+.+++..|+++|+++|....  ..+.++.++|.++|+++|..++++..|.-|..-
T Consensus        67 p~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~  125 (170)
T d1f06a1          67 GSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGRNPDFTA  125 (170)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSCHHHHHH
T ss_pred             CCcccHHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCceEEEeceeccchhH
Confidence            999999999999999999885543  344677889999999999999988878777754

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=99.56  E-value=1.7e-14  Score=123.34  Aligned_cols=143  Identities=11%  Similarity=0.065  Sum_probs=111.0

Q ss_pred             CCCCCceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc
Q 025154           31 PPQSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~-~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (257)
                      |+..++||||+|+ |.||+ .++..+...++++|++++|+.. ..+...+-.+.. ...+..|+|+++++++    .++|
T Consensus        29 ~~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~-~~~~~~~~d~~ell~~----~~iD  102 (221)
T d1h6da1          29 PEDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD----PKID  102 (221)
T ss_dssp             CCCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC----TTCC
T ss_pred             CCCCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccc-cccccccCchhhhccc----ccce
Confidence            3456799999995 99997 5777778888999999999641 111222222221 2345568999999975    6899


Q ss_pred             EEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHh
Q 025154          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISA  179 (257)
Q Consensus       109 VvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l  179 (257)
                      +|+.+|.+..+.+.+..|+++|+||+++++ +.+.++..+|.++++++++.+++.-|+  +-...-+.++.+..
T Consensus       103 ~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~li~~~  176 (221)
T d1h6da1         103 AVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYNQFSAQLDHLAEAV  176 (221)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHH
T ss_pred             eeeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcEEEeeccccCHHHHHHHHHHHhh
Confidence            999999999999999999999999999998 788999999999999999999888775  44555566666543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=3.8e-14  Score=117.03  Aligned_cols=121  Identities=15%  Similarity=0.131  Sum_probs=98.9

Q ss_pred             CceEEEEcCCChHHHH-HHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRA-AVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      ++||||+| +|+||+. ++..+.+.++ ++|++++|+..  ..+..+.   +..+. .+|+|+++++++    .++|+|+
T Consensus         3 kirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ell~~----~~id~v~   72 (181)
T d1zh8a1           3 KIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFA---KMVGNPAVFDSYEELLES----GLVDAVD   72 (181)
T ss_dssp             CEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHH---HHHSSCEEESCHHHHHHS----SCCSEEE
T ss_pred             CcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccH--hhhhhhh---ccccccceeeeeeccccc----cccceee
Confidence            58999999 5999986 7887876554 79999999641  1122222   12333 478999999975    6799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL  165 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf  165 (257)
                      .+|+|..+.+++..|+++|+||++.+| +.+.+|.++|.++++++++.+.+.-|+
T Consensus        73 I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~  127 (181)
T d1zh8a1          73 LTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENF  127 (181)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGG
T ss_pred             ccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeec
Confidence            999999999999999999999999999 789999999999999999988887774

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=99.47  E-value=1.5e-13  Score=111.78  Aligned_cols=118  Identities=12%  Similarity=0.155  Sum_probs=96.4

Q ss_pred             CceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|||||+|+ |.||+. ++..+...++++++ ++|+..  ..+..+.   +.+++ .+++|++++++     .++|+|+.
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~~~~-~~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~-----~~iD~V~I   68 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLA---TRYRVSATCTDYRDVLQ-----YGVDAVMI   68 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHH---HHTTCCCCCSSTTGGGG-----GCCSEEEE
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEECCH--HHHHHHH---HhcccccccccHHHhcc-----cccceecc
Confidence            389999995 999965 78888888999987 677531  1122222   13444 36889999987     48999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                      +|.|..+.+++..|+++|+||++++| +.+.++.++|.+++++.|..+++..|
T Consensus        69 ~tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~  121 (167)
T d1xeaa1          69 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFN  121 (167)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECG
T ss_pred             cccccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999 78889999999999999999988766

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=5.2e-13  Score=109.10  Aligned_cols=131  Identities=15%  Similarity=0.109  Sum_probs=99.7

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      ..++||+|+|+ |.||+.+++.+...++.+++++++... .+....      ..+.. +.|+++++++    .++|+|+.
T Consensus         5 ~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~-~~~~~~------~~~~~-~~~~~e~l~~----~~iD~V~I   71 (172)
T d1lc0a1           5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVS-RRELGS------LDEVR-QISLEDALRS----QEIDVAYI   71 (172)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEEC-SSCCCE------ETTEE-BCCHHHHHHC----SSEEEEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccc-hHHHHH------hhccC-cCCHHHHHhC----CCcchhhh
Confidence            35799999995 999999999887766666666665211 011111      11222 4578999875    68999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHH
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAA  176 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a  176 (257)
                      .|+|+.+.+++..|+++|+||++.+| ..+.++.++|.++|+++|+.+.+.-|+  +-.+..+.++.
T Consensus        72 ~tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i  138 (172)
T d1lc0a1          72 CSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLKNIFLKDQDIF  138 (172)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGTTHHHHHHHHH
T ss_pred             cccccccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCeEEEecHHHhhHHHHHHHHHH
Confidence            99999999999999999999999999 778999999999999999998887775  33444444443

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.39  E-value=1.7e-12  Score=111.40  Aligned_cols=144  Identities=13%  Similarity=0.097  Sum_probs=106.4

Q ss_pred             cCCCCCCCceEEEEcCCCh----HHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccc
Q 025154           28 STNPPQSNIKVIINGAVKE----IGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS  102 (257)
Q Consensus        28 ~~~~~~~~ikV~V~Ga~Gr----MG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~  102 (257)
                      ++-|...+|||||+|+ |.    +++.++.++.+ .++++|+|++|+..  ..+..+...-.......|+|+++++++  
T Consensus         9 ~~~~~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~--   83 (237)
T d2nvwa1           9 STVPSSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KSSLQTIEQLQLKHATGFDSLESFAQY--   83 (237)
T ss_dssp             GSSGGGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HHHHHHHHHTTCTTCEEESCHHHHHHC--
T ss_pred             ccCCCCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCH--HHHHHHHHhcccccceeecchhhcccc--
Confidence            4556677899999996 54    77888887765 58899999998641  111222110001245678999999975  


Q ss_pred             cCCCccEEEEcCChHhHHHHHHHHHHcC------CCeEEeCC-CCCHHHHHHHHHHhhh-cCceEEEccC--chHHHHHH
Q 025154          103 QSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDK-ASMGCLIAPT--LSIGSILL  172 (257)
Q Consensus       103 ~~~~~DVvIDFT~p~~~~~~~~~a~~~G------i~vViGTT-G~s~e~~~~L~~~a~~-~gipvl~spN--fSlGvnll  172 (257)
                        .++|+|+..|.+..+.+.+..|+++|      +||+|++| +.+.+|.++|.++|++ ++++++++-|  |.-+++-+
T Consensus        84 --~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~~~R~~p~~~~~  161 (237)
T d2nvwa1          84 --KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQGRYNSVVGNI  161 (237)
T ss_dssp             --TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGCCHHHHHH
T ss_pred             --cccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeEEEEECCcCCHHHHHH
Confidence              68999999999999999999999987      59999999 7899999999988865 4677776655  45555555


Q ss_pred             HHHHHH
Q 025154          173 QQAAIS  178 (257)
Q Consensus       173 ~~~a~~  178 (257)
                      .++.+.
T Consensus       162 k~~i~~  167 (237)
T d2nvwa1         162 LRIYES  167 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555543

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=1.7e-09  Score=83.93  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=94.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      -||.|.|.+|+.|+.+.+...+ -+..+|+.+.+.+.|++         -.++|+|++.+|+.++    ..+|+-+-|-.
T Consensus         8 trVivQGiTG~~G~~ht~~m~~-yGT~iVaGVtPgkgG~~---------~~giPVf~tV~eAv~~----~~~d~SvIfVP   73 (121)
T d1oi7a1           8 TRVLVQGITGREGQFHTKQMLT-YGTKIVAGVTPGKGGME---------VLGVPVYDTVKEAVAH----HEVDASIIFVP   73 (121)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----SCCSEEEECCC
T ss_pred             CcEEEEcCCCcHHHHHHHHHHH-hCCceEeeeecCCCCcE---------EECCchHhhHHHHHHh----cCCeEEEEeeC
Confidence            4899999999999999998775 48999999987654433         2479999999999986    68999999999


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEE
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl  160 (257)
                      |..+.+-+..|++.|+++|+..| |...-+.-++.+.+++.++.++
T Consensus        74 p~~a~dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~~~li  119 (121)
T d1oi7a1          74 APAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI  119 (121)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence            99999999999999999987766 8887777788888888776543

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=3.9e-09  Score=81.64  Aligned_cols=112  Identities=17%  Similarity=0.263  Sum_probs=95.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .-||.|.|.||+-|+.+.+...+ -+..+||.+.+.+.|+.         -.|+|+|++.+|+.++    .++|+-+-|-
T Consensus         6 ~trVlvQGiTG~~G~~ht~~m~~-yGT~vVaGVtPgkgG~~---------~~giPVf~sV~eAv~~----~~~~~SvIfV   71 (119)
T d2nu7a1           6 NTKVICQGFTGSQGTFHSEQAIA-YGTKMVGGVTPGKGGTT---------HLGLPVFNTVREAVAA----TGATASVIYV   71 (119)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTEE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHH-hCCceEEEEccCCCCcc---------cCCCchhhHHHHHHHH----hCCCeEEEec
Confidence            35899999999999999997664 59999999987654443         3589999999999886    6899988899


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEE
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl  160 (257)
                      .|..+.+-+..|++.|+++++..| |....+.-++.+++++.++.++
T Consensus        72 Pp~~a~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~~li  118 (119)
T d2nu7a1          72 PAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI  118 (119)
T ss_dssp             CGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cHHHHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence            999999999999999999987766 8888777788999998777654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.00  E-value=5.8e-10  Score=92.34  Aligned_cols=92  Identities=16%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcch--------------hhhhcCCCCCCeeeecCHHHHHhc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI--------------GMVCDMEQPLEIPVMSDLTMVLGS  100 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~--------------g~~~g~~~~~gv~v~~dl~~~l~~  100 (257)
                      |+||||+| +||+||.++|++.++++++||++-|... ....              ...... ...++++..++.++++ 
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~g~~~~~~~-   76 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSP-NYEAFIAHRRGIRIYVPQQSIKKF-EESGIPVAGTVEDLIK-   76 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSC-SHHHHHHHHTTCCEECCGGGHHHH-HTTTCCCCCCHHHHHH-
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCC-cHHHHHhcccCcceeccCccceec-cccceecCCchhhhhh-
Confidence            89999999 5999999999999999999999988421 0000              000000 1345666777788775 


Q ss_pred             cccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       101 ~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                           ++|+|||+|..-...+.++..++.|+.+|+
T Consensus        77 -----~vDiViecTG~f~~~e~a~~hl~~G~KvIi  106 (178)
T d1b7go1          77 -----TSDIVVDTTPNGVGAQYKPIYLQLQRNAIF  106 (178)
T ss_dssp             -----HCSEEEECCSTTHHHHHHHHHHHTTCEEEE
T ss_pred             -----cCCEEEECCCCcCCHHHHHHHHHcCCEEEE
Confidence                 699999999888888999999999999988

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.90  E-value=2.4e-08  Score=78.12  Aligned_cols=109  Identities=15%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .-||.|.|.||+-|+.+.+...+ -+..+||++.+.+.|+.         -.|+|||++.+|+.++    .++|+-+-|-
T Consensus        15 ~TrVivQGiTG~~G~~ht~~m~~-YGT~iVaGVtPgKgG~~---------~~giPVf~tV~eA~~~----~~~daSvIfV   80 (130)
T d1euca1          15 NTKVICQGFTGKQGTFHSQQALE-YGTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYV   80 (130)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCeEEEEcCCCcHHHHHHHHHHH-hcCCeEEeeccCCCCcc---------ccCccchhhHHHHHHh----cCCcEEEEec
Confidence            35899999999999999998765 68999999987554433         2489999999999876    5899989999


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHH-hhhcCc
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF-CDKASM  157 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~-a~~~gi  157 (257)
                      .|..+.+-+..|+++|+++|+..| |...-+.-++.+. .++.++
T Consensus        81 Pp~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~  125 (130)
T d1euca1          81 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKT  125 (130)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCc
Confidence            999999999999999999987766 7776665566554 455333

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=2.9e-09  Score=87.53  Aligned_cols=94  Identities=21%  Similarity=0.266  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--------------CCCCeeeecCHHHHHh
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--------------QPLEIPVMSDLTMVLG   99 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~--------------~~~gv~v~~dl~~~l~   99 (257)
                      +++||||+| +||+||.+++++.++++++||++-|... ......+....              ...+.++..++.++++
T Consensus         1 M~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKP-DFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSC-SHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCC-hHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc
Confidence            368999999 5999999999999999999999998421 01111111000              0123344456666663


Q ss_pred             ccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       100 ~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                            ++|||||+|-.-...+.+...+++|+..|+
T Consensus        79 ------~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi  108 (172)
T d2czca2          79 ------KVDIIVDATPGGIGAKNKPLYEKAGVKAIF  108 (172)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCEEEE
T ss_pred             ------cCCEEEECCCCCCCHHHHHHHHHcCCCEEE
Confidence                  799999999988889999999999999887

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=98.73  E-value=1.4e-08  Score=83.25  Aligned_cols=93  Identities=22%  Similarity=0.283  Sum_probs=65.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--------------CCCCeeeecCHHHHHhc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--------------QPLEIPVMSDLTMVLGS  100 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~--------------~~~gv~v~~dl~~~l~~  100 (257)
                      |+||||.| +||+||.+.+++.++++++++++-|... ......+....              ...++++..+..+++. 
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-   77 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRP-DFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD-   77 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSC-SHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH-
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCc-HHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc-
Confidence            78999999 5999999999999999999999988421 00000000000              0123444445666654 


Q ss_pred             cccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       101 ~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                           ++|+|||+|-.-...+.+...+++|+.+|+
T Consensus        78 -----~vDvViEcTG~f~~~~~~~~hl~~G~K~vi  107 (171)
T d1cf2o1          78 -----EADIVIDCTPEGIGAKNLKMYKEKGIKAIF  107 (171)
T ss_dssp             -----TCSEEEECCSTTHHHHHHHHHHHTTCEEEE
T ss_pred             -----CCCEEEEccCCCCCHHHHHHHHHcCCCEEE
Confidence                 689999999877778888888899988776

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.64  E-value=1e-07  Score=74.41  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=83.3

Q ss_pred             CceEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +-.|+|+|++   |++|..+.+.+.+.-..++.. +.+..     .+      -.|++.|.+++++-+      .+|.++
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~p-VnP~~-----~~------i~G~~~y~sl~dlp~------~vDlvv   69 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYP-VNIKE-----EE------VQGVKAYKSVKDIPD------EIDLAI   69 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEE-ECSSC-----SE------ETTEECBSSTTSCSS------CCSEEE
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEE-eccCc-----cc------cCCeEeecchhhcCC------CCceEE
Confidence            3469999998   999999999876433345554 44421     12      247889999998863      799999


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeE-EeCCCCCH------HHHHHHHHHhhhcCceEEEccC
Q 025154          112 DFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vV-iGTTG~s~------e~~~~L~~~a~~~gipvl~spN  164 (257)
                      -|+.++.+.+.++.|.+.|++-+ +=+.||++      +..++|.+.|+++|++++ .||
T Consensus        70 i~vp~~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~-GPN  128 (129)
T d2csua1          70 IVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII-GPN  128 (129)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE-CSS
T ss_pred             EecChHHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEe-CCC
Confidence            99999999999999999999954 44557753      123468888999998765 777

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.49  E-value=3.6e-07  Score=73.57  Aligned_cols=101  Identities=18%  Similarity=0.252  Sum_probs=69.4

Q ss_pred             CCCceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEE
Q 025154           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVV  110 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVv  110 (257)
                      ..++||||+| +|++|+. +.+.+...|.++|+++.++...+... .++   .+.+++++. +++++++.. +..++|+|
T Consensus         2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~-~~a---~~~~i~~~~~~~d~l~~~~-~~~~iDiV   75 (157)
T d1nvmb1           2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL-ARA---QRMGVTTTYAGVEGLIKLP-EFADIDFV   75 (157)
T ss_dssp             CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH-HHH---HHTTCCEESSHHHHHHHSG-GGGGEEEE
T ss_pred             CCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccch-hhh---hhcCCcccccceeeeeecc-cccccCEE
Confidence            4579999999 6999985 67777788999999999864322211 111   245777654 466555310 01258899


Q ss_pred             EEcCChHhHHHH--HHHHHHcCCCeEEeCCC
Q 025154          111 IDFTDASTVYDN--VKQATAFGMRSVVYVPH  139 (257)
Q Consensus       111 IDFT~p~~~~~~--~~~a~~~Gi~vViGTTG  139 (257)
                      ++.|++..+.++  +..++++|+.+|--|+.
T Consensus        76 f~ATpag~h~~~~~~~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          76 FDATSASAHVQNEALLRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             EECSCHHHHHHHHHHHHHHCTTCEEEECSTT
T ss_pred             EEcCCchhHHHhHHHHHHHHcCCEEEEcccc
Confidence            988888777664  45668999999987764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.42  E-value=4.4e-07  Score=71.64  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=81.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+|+| +|.||+.+++.+.+ .++++.. ++... . ......    ..++.+.++++++..      .+|+||-...
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~-~g~~v~~-~~~~~-~-~~~~~~----~~~~~~~~~~~e~~~------~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRS-RGVEVVT-SLEGR-S-PSTIER----ARTVGVTETSEEDVY------SCPVVISAVT   65 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHH-TTCEEEE-CCTTC-C-HHHHHH----HHHHTCEECCHHHHH------TSSEEEECSC
T ss_pred             CEEEEEc-HHHHHHHHHHHHHH-CCCeEEE-EcCch-h-HHHHHh----hhcccccccHHHHHh------hcCeEEEEec
Confidence            7999999 59999999999875 5788765 33221 1 111111    113334567788885      7999998888


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      ++...+.+..+...--.+++-+|..+++..+++.+.+++  ...+.+|-|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~--~~~~d~~v~g  114 (152)
T d1i36a2          66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEK--GGFVDAAIMG  114 (152)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSS--SEEEEEEECS
T ss_pred             CchHHHHHHhhcccCCceeeccCcCCHHHHHHHHHHHhc--cCCCcccccC
Confidence            888888888887766677777777778888889888877  4456666443

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.42  E-value=9.9e-07  Score=67.45  Aligned_cols=105  Identities=15%  Similarity=0.230  Sum_probs=83.1

Q ss_pred             eEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .|+|+|++   +|.|..+.+.+. +.++++.. +.+.  +   .++      .|+++|.+++++-+      .+|+++-|
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~-~~g~~V~p-VnP~--~---~~i------~G~~~y~sl~~lp~------~~D~vvi~   63 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLL-SKGFEVLP-VNPN--Y---DEI------EGLKCYRSVRELPK------DVDVIVFV   63 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHH-HTTCEEEE-ECTT--C---SEE------TTEECBSSGGGSCT------TCCEEEEC
T ss_pred             EEEEEcccCCCCCcHHHHHHHHH-HCCCEEEE-Eccc--c---ccc------cCccccccchhccc------cceEEEEE
Confidence            69999987   889999999887 46788665 4443  1   122      47889999998864      79999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                      +.|+...+.++.|++.|++.|.-.+|...+   ++.++++++|+.++ .||
T Consensus        64 vp~~~~~~~l~~~~~~g~k~v~~~~g~~~~---~~~~~a~~~gi~vi-gpn  110 (116)
T d1y81a1          64 VPPKVGLQVAKEAVEAGFKKLWFQPGAESE---EIRRFLEKAGVEYS-FGR  110 (116)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEECTTSCCH---HHHHHHHHHTCEEE-CSC
T ss_pred             eCHHHHHHHHHHHHhcCCceEEeccchhhH---HHHHHHHHcCCEEE-cCC
Confidence            999999999999999999999888876543   46788899888655 465

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.40  E-value=1.3e-06  Score=71.07  Aligned_cols=97  Identities=21%  Similarity=0.122  Sum_probs=67.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec---CCCCcchhhhh----cCCCCCCeeeecCHHHHHhccccCCCc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIGMVC----DMEQPLEIPVMSDLTMVLGSISQSKAR  107 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d~g~~~----g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (257)
                      ||||+|+||||-.|+.+++.+..+|.+++..+...   ...|+...+..    +. ........++.+...      .++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~   73 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGI-VDLPLQPMSDVRDFS------ADV   73 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTT-CCCBEEEESCGGGTC------TTC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccc-cccccccchhhhhhh------ccc
Confidence            89999999999999999999999999999988753   23455544322    11 011222234444333      368


Q ss_pred             cEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       108 DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      |+++-+..+....+.+....+.|+.+|-=..
T Consensus        74 dvvf~alp~~~s~~~~~~~~~~~~~vIDlSa  104 (179)
T d2g17a1          74 DVVFLATAHEVSHDLAPQFLQAGCVVFDLSG  104 (179)
T ss_dssp             CEEEECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             ceeeccccchhHHHHhhhhhhcCceeecccc
Confidence            9888556667778889999999988875333

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.38  E-value=6.7e-07  Score=69.19  Aligned_cols=87  Identities=14%  Similarity=0.121  Sum_probs=68.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVv  110 (257)
                      +.||+|+|| |.+|+++++.+..+++++++|.+|..  ..|+.+         .|++|+  ++++++..     ...+++
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I---------~Gi~V~~~~~l~~~~~-----~~i~ia   67 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPV---------RGGVIEHVDLLPQRVP-----GRIEIA   67 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE---------TTEEEEEGGGHHHHST-----TTCCEE
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE---------CCEEEecHHHHHHHHh-----hcccEE
Confidence            579999996 99999999988778899999999943  334332         367775  56666665     478888


Q ss_pred             EEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154          111 IDFTDASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      |-..+.+...+.+..|.+.|++-+..
T Consensus        68 i~~i~~~~~~~I~d~l~~~gIk~I~~   93 (126)
T d2dt5a2          68 LLTVPREAAQKAADLLVAAGIKGILN   93 (126)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EEeCCHHHHHHHHHHHHHcCCCEEee
Confidence            87777888888999999999986654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.33  E-value=1.2e-06  Score=69.45  Aligned_cols=113  Identities=17%  Similarity=0.208  Sum_probs=75.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+++|+ |+||+.+++.+... +.++. +.++..  ....++.   .++++.++.|.+++++      .+|+||-...
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~-~~~i~-v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQT-PHELI-ISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILGIK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTS-SCEEE-EECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEec-cHHHHHHHHHHHhC-CCeEE-EEcChH--HhHHhhc---cccceeeechhhhhhh------ccceeeeecc
Confidence            79999995 99999999988654 56664 344321  1122232   2457778889999986      7999998888


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEE-ccCchH
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI-APTLSI  167 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~-spNfSl  167 (257)
                      |+...+.+.. ++.+..+|.-++|++.++   |++.... +.+++. -||...
T Consensus        67 p~~~~~vl~~-l~~~~~iis~~agi~~~~---l~~~l~~-~~~ivr~mPN~~~  114 (152)
T d2ahra2          67 PQLFETVLKP-LHFKQPIISMAAGISLQR---LATFVGQ-DLPLLRIMPNMNA  114 (152)
T ss_dssp             GGGHHHHHTT-SCCCSCEEECCTTCCHHH---HHHHHCT-TSCEEEEECCGGG
T ss_pred             hHhHHHHhhh-cccceeEecccccccHHH---HHhhhcc-cccchhhccchhh
Confidence            8877666553 566777776677998765   4443321 145553 377654

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=9.1e-07  Score=72.52  Aligned_cols=92  Identities=17%  Similarity=0.116  Sum_probs=61.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ||||+|+||||-.|+.+++++..+|.++|+.+..+...|+..+++.......-.....+.+++.+      +.|+++-.+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~------~~dvvf~a~   74 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK------NCDVLFTAL   74 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH------HCSEEEECC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhcc------ccceEEEcc
Confidence            89999999999999999999999999999999877777887765431100111112345666653      588877444


Q ss_pred             ChHhHHHHHHHHHHcCCCeE
Q 025154          115 DASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      ......+.+..  ..++.||
T Consensus        75 p~~~s~~~~~~--~~~~~VI   92 (176)
T d1vkna1          75 PAGASYDLVRE--LKGVKII   92 (176)
T ss_dssp             STTHHHHHHTT--CCSCEEE
T ss_pred             ccHHHHHHHHh--hccceEE
Confidence            44444454442  3555444

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.31  E-value=4.2e-06  Score=66.48  Aligned_cols=117  Identities=19%  Similarity=0.203  Sum_probs=78.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT-  114 (257)
                      |||+++| .|.||+.+++.+.+ .++++. ++|+..  ....++.    +.+..+..+++++.+      ++|++|-+- 
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~-~G~~V~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLK-AGYSLV-VSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITMLP   65 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEe-hhHHHHHHHHHHHH-CCCeEE-EEeCCc--chhHHHH----HhhhhhcccHHHHHh------CCCeEEEEcC
Confidence            7999999 59999999998874 688876 577531  1222332    346677889999886      699988764 


Q ss_pred             ChHhHHHHH------HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          115 DASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       115 ~p~~~~~~~------~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      .++.+.+.+      ...++.|. +|+-+|..+++...++.+.+++.|+..+=+| +|-|.
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~vdap-v~gg~  124 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGT-VLIDMSSIAPLASREISDALKAKGVEMLDAP-VSGGE  124 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHTTTCEEEECC-EESHH
T ss_pred             CHHHHHHHHhCCcchhhccCCCC-EEEECCCCCHHHHHHHHHHHHHcCCceeccc-ccCCh
Confidence            566666654      22223444 4444554667777888888888787766554 56555

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=98.24  E-value=2.1e-06  Score=67.20  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=82.3

Q ss_pred             eEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .|+|+||+   +|.|..+.+.+. +.++....+ .+...+..         -.|.++|.++.++-+      .+|+++-|
T Consensus        15 sIAVVGaS~~~~k~g~~v~~~L~-~~g~~~~~v-~~~~~~~~---------i~g~~~~~~l~~i~~------~iD~v~v~   77 (136)
T d1iuka_          15 TIAVLGAHKDPSRPAHYVPRYLR-EQGYRVLPV-NPRFQGEE---------LFGEEAVASLLDLKE------PVDILDVF   77 (136)
T ss_dssp             EEEEETCCSSTTSHHHHHHHHHH-HTTCEEEEE-CGGGTTSE---------ETTEECBSSGGGCCS------CCSEEEEC
T ss_pred             eEEEEeecCCCCCchHHHHHHHh-cCCCCceEE-Eeccccce---------eeceecccchhhccC------CCceEEEe
Confidence            69999987   789999999876 467765533 22111111         247889999998763      79999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      ..|+.+.+.++.|.+.|+..+.-.+|...+   ++.++|+++|+.++
T Consensus        78 ~p~~~v~~~v~~~~~~g~k~i~~q~G~~~~---e~~~~a~~~Gi~vV  121 (136)
T d1iuka_          78 RPPSALMDHLPEVLALRPGLVWLQSGIRHP---EFEKALKEAGIPVV  121 (136)
T ss_dssp             SCHHHHTTTHHHHHHHCCSCEEECTTCCCH---HHHHHHHHTTCCEE
T ss_pred             ccHHHHHHHHHHHHhhCCCeEEEecCccCH---HHHHHHHHcCCEEE
Confidence            999999999999999999999989997654   47888999999887

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.21  E-value=1.7e-06  Score=68.41  Aligned_cols=90  Identities=17%  Similarity=0.129  Sum_probs=62.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      +|||||+||||-.|+.+++.+.  ..|..+|..+..+...|+.+....     ....+. +++....     .+.|+++-
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~-----~~~~~~-~~~~~~~-----~~~d~vf~   70 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE-----SSLRVG-DVDSFDF-----SSVGLAFF   70 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT-----EEEECE-EGGGCCG-----GGCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc-----ccchhc-cchhhhh-----ccceEEEe
Confidence            6899999999999999999886  468999987766656666543211     122222 2222211     36888775


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEE
Q 025154          113 FTDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      ++......+....+.+.|+.||-
T Consensus        71 a~p~~~s~~~~~~~~~~g~~VID   93 (144)
T d2hjsa1          71 AAAAEVSRAHAERARAAGCSVID   93 (144)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCcchhhhhccccccCCceEEe
Confidence            55666778899999999988764

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.19  E-value=9.8e-07  Score=72.28  Aligned_cols=96  Identities=14%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .+|||+|+||||-.|+.+++++.++|.++|+.+......|+..+++.........+.....++...     .++|+++..
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Dvvf~a   78 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADF-----SNVDAVFCC   78 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCG-----GGCSEEEEC
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhh-----cccceeeec
Confidence            579999999999999999999999999999988766666777665432100112222222222221     368988855


Q ss_pred             CChHhHHHHHHHHHHcCCCeEE
Q 025154          114 TDASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      +......+.+....+.+ .+|.
T Consensus        79 lp~~~s~~~~~~l~~~~-~~v~   99 (183)
T d2cvoa1          79 LPHGTTQEIIKGLPQEL-KIVD   99 (183)
T ss_dssp             CSSSHHHHHHHTSCSSC-EEEE
T ss_pred             cccchHHHHHHHHHhcC-cccc
Confidence            55555566666555554 4443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.19  E-value=8.1e-07  Score=70.12  Aligned_cols=96  Identities=14%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      |||+++|+ |.||+.+++.+.+....++. ++|+..  .....+.   .++++.++++.+++       .++|+||-...
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~-v~~r~~--~~~~~l~---~~~~~~~~~~~~~v-------~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGA--EKRERLE---KELGVETSATLPEL-------HSDDVLILAVK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSH--HHHHHHH---HHTCCEEESSCCCC-------CTTSEEEECSC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEE-EEeCCh--hHHHHhh---hhcccccccccccc-------cccceEEEecC
Confidence            79999995 99999999987766556664 566531  1223333   24678888887664       26899998888


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCCHHHH
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETV  145 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~  145 (257)
                      |....+.++.....+.-+|+-..|.+.+++
T Consensus        67 P~~~~~v~~~l~~~~~~viS~~ag~~~~~l   96 (152)
T d1yqga2          67 PQDMEAACKNIRTNGALVLSVAAGLSVGTL   96 (152)
T ss_dssp             HHHHHHHHTTCCCTTCEEEECCTTCCHHHH
T ss_pred             HHHHHHhHHHHhhcccEEeecccCCCHHHH
Confidence            988777766554445545544568887553

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.17  E-value=1.7e-05  Score=62.99  Aligned_cols=113  Identities=15%  Similarity=0.146  Sum_probs=73.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |.||+++| .|.||..+++.+.+ .++++. ++|+..  .....+.    ..+.....++.+++.      .+|+++..-
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~-~g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLK-AGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVISML   65 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------SCSEEEECC
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHH-CCCeEE-EEECch--hhhhhhh----hhhccccchhhhhcc------ccCeeeecc
Confidence            67999999 69999999998875 578765 577531  1122222    345566778888874      688777643


Q ss_pred             -ChHhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          115 -DASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       115 -~p~~~~~~~~~------a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                       .+++..+.+..      .+..| .+|+-+|..+++...++.+.+++.|+..+=+|
T Consensus        66 ~~~~~~~~v~~~~~~~~~~l~~g-~iiid~st~~p~~~~~~~~~~~~~gi~~~dap  120 (162)
T d3cuma2          66 PASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAMLDAP  120 (162)
T ss_dssp             SCHHHHHHHHHSTTCHHHHSCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             cchhhHHHHHhccccccccCCCC-CEEEECCCCCHHHHHHHHHHHHHCCCcEEecc
Confidence             34443333221      12223 36666666778888888888888888777655

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.16  E-value=7.2e-06  Score=64.48  Aligned_cols=106  Identities=18%  Similarity=0.140  Sum_probs=81.6

Q ss_pred             ceEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID  112 (257)
                      -+|+|+|++   +|.|..+++.+.+ .++++.. +.+..     .++      .|.++|.+++++-+      .+|+++-
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~-~g~~v~p-VnP~~-----~~i------~G~~~~~sl~dlp~------~iD~v~i   80 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLE-HGYDVYP-VNPKY-----EEV------LGRKCYPSVLDIPD------KIEVVDL   80 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEE-ECTTC-----SEE------TTEECBSSGGGCSS------CCSEEEE
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHH-CCCEEEE-ECCcc-----ccc------CCCcccccccccCc------cceEEEE
Confidence            369999998   8999999998875 5788654 34431     222      47889999998764      7999999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccC
Q 025154          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spN  164 (257)
                      |..|+...+.++.|++.|++.|.=-+|...|   ++++.++++|+.++ .||
T Consensus        81 ~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~e---e~~~~a~~~gi~vi-g~~  128 (139)
T d2d59a1          81 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYNR---EASKKADEAGLIIV-ANR  128 (139)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEECTTCCCH---HHHHHHHHTTCEEE-ESC
T ss_pred             EeCHHHHHHHHHHHHHhCCCEEEEeccccCH---HHHHHHHHCCCEEE-cCC
Confidence            9999999999999999999988766654333   46667888887655 455

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=4.6e-06  Score=67.27  Aligned_cols=136  Identities=11%  Similarity=0.051  Sum_probs=79.8

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcCC---cEEEEEEecC-----CCCcchhh---hhcCCCCCCeeeecCHHHHHhcc
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSH-----SVGEDIGM---VCDMEQPLEIPVMSDLTMVLGSI  101 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~-----~~g~d~g~---~~g~~~~~gv~v~~dl~~~l~~~  101 (257)
                      +.+++|+|+| +|.+|+.+++.+.+++.   +.++++.++.     ..|.+...   +... ......-..+++.+.+.+
T Consensus         2 ~k~i~I~l~G-~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (168)
T d1ebfa1           2 TKVVNVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAA-LAASTTKTLPLDDLIAHL   79 (168)
T ss_dssp             CSEEEEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHH-HHTCCCBCCCHHHHHHHH
T ss_pred             CCEEEEEEEe-CCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhh-hhhcccccccHHHHHHHh
Confidence            3579999999 59999999998876543   5678888743     11111110   0000 000011122222222111


Q ss_pred             ccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CC--CHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154          102 SQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HI--QLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (257)
Q Consensus       102 ~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~--s~e~~~~L~~~a~~~gipvl~spNfSlGvnl  171 (257)
                      ......||++|.|.-+...++...++++|++||..== .+  +-++.++|.+++++++ .+.|-++..=|+-+
T Consensus        80 ~~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTANK~~la~~~~~~~~L~~~a~~~~-~~~yEatVgaGiPi  151 (168)
T d1ebfa1          80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNG-FVYHEATVGAGLAA  151 (168)
T ss_dssp             TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCC-CEECGGGTTTTSHH
T ss_pred             ccCCCceEEEEecCChHHHHHHHHHHHcCCeEEecCcccccCCHHHHHHHHHHHHHCC-cEEEeCeeeechhH
Confidence            1124678999999877777888999999999985321 22  3356677877777765 35555444444433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.07  E-value=1.6e-05  Score=62.80  Aligned_cols=102  Identities=14%  Similarity=0.174  Sum_probs=65.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      |||+|+|+ |+||+.+++.+. +.++++++ +|+..  ..+....    +.++  ...++++ .++      ++|+||-.
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~-~~g~~V~~-~d~~~--~~~~~a~----~~~~~~~~~~~~~-~~~------~~DiIila   64 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLR-RRGHYLIG-VSRQQ--STCEKAV----ERQLVDEAGQDLS-LLQ------TAKIIFLC   64 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGG-GGT------TCSEEEEC
T ss_pred             CEEEEEee-cHHHHHHHHHHH-HCCCEEEE-EECCc--hHHHHHH----Hhhccceeeeecc-ccc------cccccccc
Confidence            79999995 999999999876 56899875 67641  1111111    1222  2344554 443      79999977


Q ss_pred             CChHhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHHHHHhh
Q 025154          114 TDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCD  153 (257)
Q Consensus       114 T~p~~~~~~~~~a~~--~Gi~vViGTTG~s~e~~~~L~~~a~  153 (257)
                      +.++...+.+.....  ....+|+-+++........+.+...
T Consensus        65 vp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~  106 (165)
T d2f1ka2          65 TPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS  106 (165)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST
T ss_pred             CcHhhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhhc
Confidence            777777777766655  3566777776666655555555443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.06  E-value=3.7e-06  Score=69.15  Aligned_cols=128  Identities=15%  Similarity=0.208  Sum_probs=79.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------CCcchhhhhcCCCCCCeeeecCHHHHHhccccCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (257)
                      .|.||+|+|+ |.||.+++..+.. .+.++. .+++..        .+.....+-+..-+..+.++.|++++++      
T Consensus         6 ~m~KI~ViGa-G~wGtAlA~~La~-~g~~V~-l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~------   76 (189)
T d1n1ea2           6 YLNKAVVFGS-GAFGTALAMVLSK-KCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------   76 (189)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHT-TEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------
T ss_pred             eeceEEEECC-CHHHHHHHHHHHH-cCCeEE-EEEecHHHHHHHhhcccccccccccccccccccchhhhhccC------
Confidence            3568999996 9999999987764 455544 344320        0000000111111346778999999995      


Q ss_pred             CccEEEEcCChHhHHHHHHH--------HHHcCCCeEEeCCCCCHHHHH----HHHHHhhhcCceEEEccCchHHHH
Q 025154          106 ARAVVIDFTDASTVYDNVKQ--------ATAFGMRSVVYVPHIQLETVS----ALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       106 ~~DVvIDFT~p~~~~~~~~~--------a~~~Gi~vViGTTG~s~e~~~----~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      ++|++|-..+.....+.++.        .+..+.++|+.|=|+..+...    .|.+.-....+.++-.|||+--+.
T Consensus        77 ~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~  153 (189)
T d1n1ea2          77 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVA  153 (189)
T ss_dssp             TCSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHH
T ss_pred             CCCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHH
Confidence            78998855544444444433        357888999887787543322    233333344478889999998774

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=2.3e-05  Score=62.02  Aligned_cols=93  Identities=8%  Similarity=-0.034  Sum_probs=59.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc---CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHH-HHHhccccCCCccEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVV  110 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVv  110 (257)
                      |.||||+||||-.|+.+++.+.++   |-.+|+....+...|+.... .    .....+.+..+ +.+.      ++|++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~-~----~~~~~~~~~~~~~~~~------~~Div   69 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSF-G----GTTGTLQDAFDLEALK------ALDII   69 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGG-G----TCCCBCEETTCHHHHH------TCSEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccc-c----CCceeeecccchhhhh------cCcEE
Confidence            679999999999999999876655   66677765444433433221 1    11222222222 2343      79988


Q ss_pred             EEcCChHhHHHHHHHHHHcCCC-eEEeCC
Q 025154          111 IDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~Gi~-vViGTT  138 (257)
                      +-++..+.+.+....+.+.|.. +||=-.
T Consensus        70 F~a~~~~~s~~~~~~~~~~g~~~~VID~S   98 (146)
T d1t4ba1          70 VTCQGGDYTNEIYPKLRESGWQGYWIDAA   98 (146)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             EEecCchHHHHhhHHHHhcCCCeecccCC
Confidence            8555566678899999999986 444443

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=4.2e-05  Score=68.21  Aligned_cols=105  Identities=11%  Similarity=0.098  Sum_probs=80.0

Q ss_pred             CChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCeeeecCHHHHHhccccCCCccEEEEcC------Ch
Q 025154           44 VKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DA  116 (257)
Q Consensus        44 ~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT------~p  116 (257)
                      +||||..++|   ..+..++++++ +...|+++++++ +.  ..++|++.|++++++     ..+|++|-=.      .|
T Consensus        25 ~gKTa~gLlR---y~~~~~v~~V~-~~~aG~~~~~~l~g~--~~~IPIv~s~~~A~~-----~g~~~liiGvAp~GG~lp   93 (338)
T d2g0ta1          25 HAKTTYGLLR---HSRLFKPVCVV-AEHEGKMASDFVKPV--RYDVPVVSSVEKAKE-----MGAEVLIIGVSNPGGYLE   93 (338)
T ss_dssp             GGHHHHHHHH---HCSSEEEEEEE-SSCTTCBGGGTCC-C--CSCCBEESSHHHHHH-----TTCCEEEECCCSCCHHHH
T ss_pred             CchHhhhHHh---ccCCCeEEEEE-CCCCCCchhhhcCCC--CCCCCEeCCHHHHHh-----cCCCEEEEEecccCCcCC
Confidence            5788887776   35667676554 456799998855 43  568999999999998     5899888743      48


Q ss_pred             HhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (257)
Q Consensus       117 ~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl  160 (257)
                      +...+.+..|+++|+++|.|---+- .+..++.++|+++|+.++
T Consensus        94 ~~w~~~i~~Al~~Gl~IvsGLH~~L-~ddpel~~~A~~~g~~i~  136 (338)
T d2g0ta1          94 EQIATLVKKALSLGMDVISGLHFKI-SQQTEFLKIAHENGTRII  136 (338)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHHcCCeEEecchhhh-ccCHHHHHHHHhCCCEEE
Confidence            9999999999999999999876542 234678888888887776

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.83  E-value=7.3e-05  Score=59.16  Aligned_cols=92  Identities=12%  Similarity=-0.049  Sum_probs=58.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHH-HHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvI  111 (257)
                      |||||+||||-.|+.+++.+.+   .|..+++....+...|+... +.    .....+....+ +.+      .+.|+++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~-~~----~~~~~~~~~~~~~~~------~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPN-FG----KDAGMLHDAFDIESL------KQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCC-SS----SCCCBCEETTCHHHH------TTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccc-cC----Ccceeeecccchhhh------ccccEEE
Confidence            7999999999999999997764   45678876655444333211 11    11122222222 234      3789988


Q ss_pred             EcCChHhHHHHHHHHHHcCCC-eEEeCC
Q 025154          112 DFTDASTVYDNVKQATAFGMR-SVVYVP  138 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~-vViGTT  138 (257)
                      -.+..+.+.+.+..+.+.|+. +||=-+
T Consensus        70 ~alp~~~s~~~~~~l~~~g~~~~VIDlS   97 (147)
T d1mb4a1          70 TCQGGSYTEKVYPALRQAGWKGYWIDAA   97 (147)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred             EecCchHHHHHhHHHHHcCCceEEEeCC
Confidence            555566668888899999975 555443

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.72  E-value=3.8e-05  Score=60.76  Aligned_cols=92  Identities=13%  Similarity=0.131  Sum_probs=62.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .||||+||||-.|+++++++.++  |..++.....+...|+.....     ..........+...      .+.|+++-.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~-----~~~~~~~~~~~~~~------~~~d~~f~~   70 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFK-----DQDITIEETTETAF------EGVDIALFS   70 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEET-----TEEEEEEECCTTTT------TTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccccccc-----CCcccccccchhhh------hhhhhhhhc
Confidence            58999999999999999999988  667777665544445443321     11222333333333      367877755


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      +.+......+..+.+.|+.||-=..
T Consensus        71 ~~~~~s~~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          71 AGSSTSAKYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             cCccchhhHHhhhccccceehhcCh
Confidence            6677778888889999999885443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.70  E-value=0.00013  Score=58.72  Aligned_cols=126  Identities=16%  Similarity=0.081  Sum_probs=74.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--------cC-CCCCCeeeecCHHHHHhccccCCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--------DM-EQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--------g~-~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      |||+|+|+ |.||.+++..+... +.++.- +.+...-+-+..+.        +. .....+..++|++++++      +
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~-g~~V~l-~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~   71 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDN-GNEVRI-WGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE------N   71 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHH-CCEEEE-ECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT------T
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHh------c
Confidence            79999996 99999999988754 555442 22110000001110        00 01123445788999885      7


Q ss_pred             ccEEEEcCChHhHHHHHHHHHH--cCCCeEEeCCCCCHH------HHHHHHHHhh--hcCceEEEccCchHHHH
Q 025154          107 RAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHIQLE------TVSALSAFCD--KASMGCLIAPTLSIGSI  170 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~--~Gi~vViGTTG~s~e------~~~~L~~~a~--~~gipvl~spNfSlGvn  170 (257)
                      +|++|..+.+....+.+.....  .+.++|+-|.|+.+.      -.+.+++...  .....++-.|||+--+.
T Consensus        72 ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~  145 (180)
T d1txga2          72 AEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVA  145 (180)
T ss_dssp             CSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHH
T ss_pred             cchhhcccchhhhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHH
Confidence            9999977777777776665543  456777777775211      1223444332  22356777899998764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.59  E-value=0.00035  Score=54.14  Aligned_cols=119  Identities=13%  Similarity=0.079  Sum_probs=78.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-eee-------ecCHHHHHhccccCCCc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPV-------MSDLTMVLGSISQSKAR  107 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g-v~v-------~~dl~~~l~~~~~~~~~  107 (257)
                      -||.|+|| |+||+.+++.+. +.++++ -++|+..  ..+.++..   ..+ ..+       ....++.+      ...
T Consensus         3 K~IliiGa-G~~G~~~a~~L~-~~g~~V-~v~dr~~--~~a~~l~~---~~~~~~~~~~~~~~~~~~~~~i------~~~   68 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLT-DSGIKV-TVACRTL--ESAKKLSA---GVQHSTPISLDVNDDAALDAEV------AKH   68 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHH-TTTCEE-EEEESCH--HHHHHHHT---TCTTEEEEECCTTCHHHHHHHH------TTS
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCCEE-EEEECCh--HHHHHHHh---cccccccccccccchhhhHhhh------hcc
Confidence            48999996 999999999887 457885 4788641  11222221   111 111       12233444      368


Q ss_pred             cEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       108 DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                      |++|..+........+..+.+.+++++. .+ +..+....+.+.++..+..++..........
T Consensus        69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  129 (182)
T d1e5qa1          69 DLVISLIPYTFHATVIKSAIRQKKHVVT-TS-YVSPAMMELDQAAKDAGITVMNEIGYSAMAK  129 (182)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHTCEEEC-SS-CCCHHHHHTHHHHHHTTCEEECSCBCCHHHH
T ss_pred             ceeEeeccchhhhHHHHHHHhhccceee-cc-cCcHHHHHHHHHhccccceeehhhhcchhhh
Confidence            8989888888888899999999999763 33 3344567788888887777776555555443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=0.00012  Score=56.70  Aligned_cols=99  Identities=15%  Similarity=0.179  Sum_probs=59.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |||+|+|+ |.||..++..+.+ .++++.............. ..+.. ......+..+..+.+.      .+|++|-++
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCK-QGHEVQGWLRVPQPYCSVN-LVETDGSIFNESLTANDPDFLA------TSDLLLVTL   71 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEEECSSCCSEEEEE-EECTTSCEEEEEEEESCHHHHH------TCSEEEECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-CCCceEEEEcCHHHhhhhc-cccCCccccccccccchhhhhc------ccceEEEee
Confidence            79999996 9999999988764 6787765433221111110 00100 0111223333344443      799999888


Q ss_pred             ChHhHHHHHHHHHH---cCCCeEEeCCCCCHH
Q 025154          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLE  143 (257)
Q Consensus       115 ~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e  143 (257)
                      .+..+.+.++.+..   .+..+|+...|+..+
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             cccchHHHHHhhccccCcccEEeeccCcccHH
Confidence            77777666665543   467788888898653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00046  Score=55.63  Aligned_cols=88  Identities=22%  Similarity=0.243  Sum_probs=54.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------ecCHHHHHhccccCCC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~  106 (257)
                      +|.||+|+||+|..|+.+++.+.+ .++++.+....+..-..   .    .+.++.+       .+++++++.      +
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~-~g~~V~~~~R~~~~~~~---~----~~~~~~~~~gD~~d~~~l~~al~------~   67 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPS---E----GPRPAHVVVGDVLQAADVDKTVA------G   67 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCGGGSCS---S----SCCCSEEEESCTTSHHHHHHHHT------T
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEcChhhccc---c----cccccccccccccchhhHHHHhc------C
Confidence            367999999999999999998875 47899887642210000   0    0122222       234455563      7


Q ss_pred             ccEEEEcCC-----------hHhHHHHHHHHHHcCCCeEE
Q 025154          107 RAVVIDFTD-----------ASTVYDNVKQATAFGMRSVV  135 (257)
Q Consensus       107 ~DVvIDFT~-----------p~~~~~~~~~a~~~Gi~vVi  135 (257)
                      +|+||....           .+.....+..+.++|++-++
T Consensus        68 ~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i  107 (205)
T d1hdoa_          68 QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVV  107 (205)
T ss_dssp             CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEE
Confidence            899887642           12334566777778877443

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=9.6e-05  Score=59.67  Aligned_cols=34  Identities=38%  Similarity=0.457  Sum_probs=30.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .|||||.| .||+||.+.|++.++++++++++=|+
T Consensus         1 tikigING-FGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           1 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             CeEEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            37999999 59999999999999999999988774

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=97.52  E-value=5.2e-05  Score=61.41  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ++||||.| .||+||.+.|++.++++++++++-|+
T Consensus         1 kikIgING-FGRIGR~v~R~~~~~~~~~ivaINd~   34 (169)
T d1u8fo1           1 KVKVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDP   34 (169)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECS
T ss_pred             CcEEEEEC-CcHHHHHHHHHHHHCCCcEEEEecCC
Confidence            58999999 59999999999999999999999884

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.47  E-value=0.00012  Score=60.24  Aligned_cols=36  Identities=33%  Similarity=0.473  Sum_probs=30.5

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhc----CCcEEEEEEecC
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDSH   70 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~~   70 (257)
                      ++|||||.| .||+||.+.|.+.++    ++++++++.|+.
T Consensus         1 M~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~   40 (190)
T d1k3ta1           1 MPIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMN   40 (190)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESC
T ss_pred             CCeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCC
Confidence            468999999 599999999987754    578999999863

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.40  E-value=0.0013  Score=50.67  Aligned_cols=94  Identities=13%  Similarity=0.155  Sum_probs=62.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      .|.||+|+|++|.||+.+++.+. ..++++.. +|....                   .+.++.+      ..+|.++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~-~~G~~V~~-~d~~~~-------------------~~~~~~~------~~~~~v~~~   60 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLR-ASGYPISI-LDREDW-------------------AVAESIL------ANADVVIVS   60 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHH-TTTCCEEE-ECTTCG-------------------GGHHHHH------TTCSEEEEC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHH-HcCCCcEe-cccccc-------------------cccchhh------hhccccccc
Confidence            35699999967999999999886 46787764 564310                   1123334      368888888


Q ss_pred             CChHhHHHHHHHHHHcC--CCeEEeCCCCCHHHHHHHHHHhhh
Q 025154          114 TDASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDK  154 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~G--i~vViGTTG~s~e~~~~L~~~a~~  154 (257)
                      +.+....+.+......-  -.+|+-++....+..+++.+....
T Consensus        61 ~~~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~  103 (152)
T d2pv7a2          61 VPINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTG  103 (152)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCSS
T ss_pred             cchhhheeeeecccccccCCceEEEecccCHHHHHHHHHHccC
Confidence            88888777777766542  246666666676666666665433

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.35  E-value=0.0012  Score=52.09  Aligned_cols=119  Identities=12%  Similarity=0.137  Sum_probs=64.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----CCCCeeeecCHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~----~~~gv~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |||+|+| .|+||..+++.+.+ .++++. ++|+..  .....+....    .........+.+.++..+   ..++.++
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~~-~G~~V~-~~dr~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   73 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIAE-KGFKVA-VFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEEe-ehHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHHHcCCccccccchhhhhhhhHHHHhc---ccceEEE
Confidence            7999999 69999999999874 578875 577531  1111111100    011223344555554321   2455555


Q ss_pred             EcCChH-hHH---HHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154          112 DFTDAS-TVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (257)
Q Consensus       112 DFT~p~-~~~---~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp  163 (257)
                      +...+. ...   ..+...+..|.-+| -++-.+++...++.+..++.++..+-+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii-~~st~~~~~~~~~~~~l~~~~~~~ldap  128 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILV-DTGNAHFKDQGRRAQQLEAAGLRFLGMG  128 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEE-ECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EeecCcchhhhhhhhhhhhccccceec-ccCccchhHHHHHHHHHhhcceeEeccc
Confidence            554433 222   33344444554444 4444456666677777767677666554

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.34  E-value=0.0026  Score=50.28  Aligned_cols=125  Identities=10%  Similarity=0.138  Sum_probs=70.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -+|+++| .|.||..+++.+.+ .++++. ++|+..  ..+.++...+ .........+.+++.+..   ..+|++|-+-
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMND-HGFVVC-AFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSKL---KKPRRIILLV   74 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHH-TTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHHB---CSSCEEEECS
T ss_pred             CcEEEEe-EhHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHHHhccccccccchhhhhhhhhhh---cccceEEEec
Confidence            4799999 59999999999885 578876 577531  1122222110 011112223333333211   3678776553


Q ss_pred             -ChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154          115 -DASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (257)
Q Consensus       115 -~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn  170 (257)
                       .++.+.+.....+.   .|. +|+-+|..++++..++.+.+++.|+.++ .+.+|=|..
T Consensus        75 ~~~~~v~~v~~~l~~~~~~g~-iiid~sT~~~~~~~~~~~~~~~~g~~~l-dapvsGg~~  132 (176)
T d2pgda2          75 KAGQAVDNFIEKLVPLLDIGD-IIIDGGNSEYRDTMRRCRDLKDKGILFV-GSGVSGGED  132 (176)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEE-EEEEESHHH
T ss_pred             CchHHHHHHHHHHHhccccCc-EEEecCcchhHHHHHHHHHHHhcCCcee-ccccccCcc
Confidence             44555554444333   343 5555555667777777777777777666 455666663

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.32  E-value=0.00029  Score=56.98  Aligned_cols=33  Identities=30%  Similarity=0.374  Sum_probs=27.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~   69 (257)
                      |||||.| .||+||.+.|.+.+.  +++++|++=|+
T Consensus         1 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~   35 (172)
T d1rm4a1           1 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence            7999999 599999999987754  44999987764

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=97.32  E-value=0.00013  Score=59.20  Aligned_cols=33  Identities=39%  Similarity=0.457  Sum_probs=30.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +||||.| .||+||.+.+++.+.++++++++=|.
T Consensus         2 ikIgING-fGRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           2 VKVGING-FGRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEEES-CSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEEC-CCHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            7999999 59999999999999999999998774

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=0.0031  Score=53.19  Aligned_cols=139  Identities=19%  Similarity=0.207  Sum_probs=95.9

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhc------C----------------CcEEEEEEe--cCCCCcchhhhhcCC------
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKA------R----------------GMEVAGAID--SHSVGEDIGMVCDME------   83 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~------~----------------~~eLvg~vd--~~~~g~d~g~~~g~~------   83 (257)
                      +++||+|+|. |.-.+.+++-+..-      .                ++|+|+++|  .++.|+|+.+..-..      
T Consensus         1 ~kIrVaIvGv-GNcASslvqGieyyk~~~~~~~v~Glm~~~iggY~v~DIe~VaafDVD~~KVGkdlseAi~a~pN~t~~   79 (243)
T d1gr0a1           1 TEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIK   79 (243)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCC
T ss_pred             CceEEEEEcc-hHHHHHHHHHHHHHhcCCCccccccceecccCCccccceEEEEEEecCccccCCcHHHHHhcCCCCcee
Confidence            4799999995 99999999988521      1                459999998  457898887643110      


Q ss_pred             ----CCCCeeee-----------------------cCHHHHHhccccCCCccEEEEcC---ChHhHHHHHHHHHHcCCCe
Q 025154           84 ----QPLEIPVM-----------------------SDLTMVLGSISQSKARAVVIDFT---DASTVYDNVKQATAFGMRS  133 (257)
Q Consensus        84 ----~~~gv~v~-----------------------~dl~~~l~~~~~~~~~DVvIDFT---~p~~~~~~~~~a~~~Gi~v  133 (257)
                          .+.|+.|.                       .|+-+.+.+    .++||+|-|-   +-+++.-++..|++.|+.+
T Consensus        80 ~~d~p~~gv~V~~G~~LDg~~~~~~~~~~~~~~~~~dvv~~Lk~----~~~dVlvnylPvGse~A~~~YA~~al~Ag~aF  155 (243)
T d1gr0a1          80 IADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKE----AKVDVLVSYLPVGSEEADKFYAQCAIDAGVAF  155 (243)
T ss_dssp             CSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHH----TTCSEEEECCCTTCHHHHHHHHHHHHHHTCEE
T ss_pred             eCCCCCCCCEEeccCCccccchhhhcccCCCCccHHHHHHHHHh----cCCCEEEEecCCCcHHHHHHHHHHHHHcCceE
Confidence                12233221                       123334433    6899999985   4677888999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHhhhcCceEE----EccCchHHHHH-HHHHHHHh
Q 025154          134 VVYVPHIQLETVSALSAFCDKASMGCL----IAPTLSIGSIL-LQQAAISA  179 (257)
Q Consensus       134 ViGTTG~s~e~~~~L~~~a~~~gipvl----~spNfSlGvnl-l~~~a~~l  179 (257)
                      |=.++-|-.-+ .++.+..+++|+|++    .||| |-|+.+ +-++++.+
T Consensus       156 VN~iP~fIAsd-p~w~~kF~e~glpivGDDikspn-~AgvviDaiR~aKla  204 (243)
T d1gr0a1         156 VNALPVFIASD-PVWAKKFTDARVPIVGDDIKSPN-SAGVIIDAVRAAKIA  204 (243)
T ss_dssp             EECSSCCSTTS-HHHHHHHHHHTCEEEESSBCCHH-HHHHHHHHHHHHHHH
T ss_pred             EecccccccCC-HHHHHHHHHcCCcEEcccccccc-cchhHHHHHHHHHHH
Confidence            99999774322 346667788899998    4665 567765 44445444

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=97.30  E-value=0.00023  Score=57.64  Aligned_cols=34  Identities=32%  Similarity=0.455  Sum_probs=29.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh---cCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~   69 (257)
                      .|||||.| .||+||.+.|++.+   .++++++++=|+
T Consensus         1 tikigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           1 TIRVAING-YGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             CeEEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            37999999 59999999998875   578999998874

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.28  E-value=0.00023  Score=57.29  Aligned_cols=33  Identities=33%  Similarity=0.391  Sum_probs=30.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||||.| .||+||.+.+.+.+.++++++++=|+
T Consensus         1 tkigING-fGRIGR~v~R~~~~~~~~~iv~INd~   33 (166)
T d2b4ro1           1 TKLGING-FGRIGRLVFRAAFGRKDIEVVAINDP   33 (166)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECT
T ss_pred             CeEEEEC-CCHHHHHHHHHHhhCCCcEEEEECCC
Confidence            3899999 59999999999999999999998875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.23  E-value=0.002  Score=50.22  Aligned_cols=105  Identities=16%  Similarity=0.107  Sum_probs=62.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |.||+|+|+ |.||..+++.+.+. ...++.+ +|+..  .......    +.++  .+..+.++...     ..+|++|
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~-~D~~~--~~~~~a~----~~~~~~~~~~~~~~~~~-----~~~dlIi   67 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYG-YDINP--ESISKAV----DLGIIDEGTTSIAKVED-----FSPDFVM   67 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGGGGGG-----TCCSEEE
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEE-EECCh--HHHHHHH----Hhhcchhhhhhhhhhhc-----ccccccc
Confidence            457999995 99999999988754 3456554 67531  1111111    1222  23445554443     3789999


Q ss_pred             EcCChHhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHHHHHh
Q 025154          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFC  152 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~--~Gi~vViGTTG~s~e~~~~L~~~a  152 (257)
                      -.+.|+...+.+.....  ..-.+|+-+++-...-.+.+++..
T Consensus        68 la~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~  110 (171)
T d2g5ca2          68 LSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL  110 (171)
T ss_dssp             ECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             ccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhh
Confidence            88888888777766544  233466666554433344555443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.14  E-value=0.0027  Score=49.49  Aligned_cols=93  Identities=16%  Similarity=0.145  Sum_probs=56.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc----------C-CCCCCeeeecCHHHHHhccccC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----------M-EQPLEIPVMSDLTMVLGSISQS  104 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g----------~-~~~~gv~v~~dl~~~l~~~~~~  104 (257)
                      .||+|+|+ |.||..++..+.+ .++++. ++++..  .....+..          . .......+++|+++++.     
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~-~G~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----   71 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLAL-KGQSVL-AWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK-----   71 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT-----
T ss_pred             CEEEEECc-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc-----
Confidence            58999996 9999999988775 578766 555420  01111100          0 00122345678999885     


Q ss_pred             CCccEEEEcCChHhHHHHHHHHHH---cCCCeEEeCCCC
Q 025154          105 KARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHI  140 (257)
Q Consensus       105 ~~~DVvIDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~  140 (257)
                       ++|++|-++.+..+.+.+.....   .+. +|+...|.
T Consensus        72 -~aD~iii~v~~~~~~~~~~~i~~~l~~~~-~iv~~~g~  108 (184)
T d1bg6a2          72 -DADVILIVVPAIHHASIAANIASYISEGQ-LIILNPGA  108 (184)
T ss_dssp             -TCSEEEECSCGGGHHHHHHHHGGGCCTTC-EEEESSCC
T ss_pred             -CCCEEEEEEchhHHHHHHHHhhhccCCCC-EEEEeCCC
Confidence             79999988877766655544433   344 34445443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.06  E-value=0.004  Score=46.80  Aligned_cols=119  Identities=13%  Similarity=0.248  Sum_probs=67.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---cCHHHHHhccccCCCccEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVvI  111 (257)
                      |||.|+|+ |++|+.+++.+. ..+.+++ ++|...  ..+..+..   ..++.+ +   .|.+-+.+.  .-.++|.+|
T Consensus         1 M~IvI~G~-G~~G~~la~~L~-~~g~~v~-vid~d~--~~~~~~~~---~~~~~vi~Gd~~~~~~l~~~--~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLS-EKGHDIV-LIDIDK--DICKKASA---EIDALVINGDCTKIKTLEDA--GIEDADMYI   70 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHHHH---HCSSEEEESCTTSHHHHHHT--TTTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCCcc-eecCCh--hhhhhhhh---hhhhhhccCcccchhhhhhc--Chhhhhhhc
Confidence            79999995 999999999876 4577765 466431  11111211   223333 2   233322210  113688888


Q ss_pred             EcCChH-hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          112 DFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       112 DFT~p~-~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      -.|.-+ .-.-....+.+.|.+-++..+. +++..+.+    ++.|+..++.|.+-.+-
T Consensus        71 ~~t~~d~~N~~~~~~~k~~~~~~iI~~~~-~~~~~~~l----~~~G~d~vi~p~~~~a~  124 (132)
T d1lssa_          71 AVTGKEEVNLMSSLLAKSYGINKTIARIS-EIEYKDVF----ERLGVDVVVSPELIAAN  124 (132)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCCCEEEECS-STTHHHHH----HHTTCSEEECHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHcCCceEEEEec-CHHHHHHH----HHCCCCEEECHHHHHHH
Confidence            776443 3333445556778776665543 33343444    55677788888765443

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.96  E-value=0.0027  Score=49.21  Aligned_cols=115  Identities=17%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE-cCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID-FTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID-FT~  115 (257)
                      ||+++| .|+||..+++.+.+ .+..++ ..+..   .....+..   ..+. .....+.+.       ++|++|- ...
T Consensus         2 kIg~IG-lG~MG~~ma~~L~~-~g~~~~-~~~~~---~~~~~~~~---~~~~-~~~~~~~~~-------~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIG-LGAMGYPMAGHLAR-RFPTLV-WNRTF---EKALRHQE---EFGS-EAVPLERVA-------EARVIFTCLPT   64 (156)
T ss_dssp             CEEEEC-CSTTHHHHHHHHHT-TSCEEE-ECSST---HHHHHHHH---HHCC-EECCGGGGG-------GCSEEEECCSS
T ss_pred             eEEEEe-HHHHHHHHHHHHHh-CCCEEE-EeCCH---HHHHHHHH---HcCC-ccccccccc-------ceeEEEecccc
Confidence            799999 69999999999974 566543 23322   11111110   1111 122333332       4665553 334


Q ss_pred             hHhHHHHHHHHHHcC--CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154          116 ASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (257)
Q Consensus       116 p~~~~~~~~~a~~~G--i~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv  169 (257)
                      ++.+.......++..  -.+++-++..++++.+++.+.+++.|+.++=+| +|=|.
T Consensus        65 ~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldap-VsGg~  119 (156)
T d2cvza2          65 TREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAP-VSGGT  119 (156)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECC-EESHH
T ss_pred             hhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEecc-ccCch
Confidence            555554444443322  234455555667788888888888888777554 44454

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.0011  Score=53.23  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=27.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~   69 (257)
                      ||||.| .||+||.+.|.+.+  .+++++|++=|.
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            899999 59999999998875  568999988663

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=96.84  E-value=0.00089  Score=53.76  Aligned_cols=32  Identities=44%  Similarity=0.522  Sum_probs=27.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||||.| .||+||.+.|++. .++++++++=|.
T Consensus         1 ikigING-fGRIGR~~~R~l~-~~~i~iv~INd~   32 (168)
T d2g82a1           1 MKVGING-FGRIGRQVFRILH-SRGVEVALINDL   32 (168)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-HHTCCEEEEECS
T ss_pred             CEEEEEC-CcHHHHHHHHHHh-cCCCEEEEECCC
Confidence            7999999 5999999999765 568999998874

>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1419
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.0029  Score=54.50  Aligned_cols=137  Identities=15%  Similarity=0.221  Sum_probs=82.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh--------------------cCCcEEEEEEec--CCCCcchhhhhcC--------CC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK--------------------ARGMEVAGAIDS--HSVGEDIGMVCDM--------EQ   84 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~--------------------~~~~eLvg~vd~--~~~g~d~g~~~g~--------~~   84 (257)
                      |+||+|+|. |..++.+++-+..                    .++.+++|++|-  .+.|+++.+..-.        .+
T Consensus         2 mIrV~ivG~-GnvAStlv~Gl~~~k~g~~~~~G~p~~~~~~~~~~Dievvgg~DId~~kvgk~l~eai~~~~n~~~~~~~   80 (275)
T d1vjpa1           2 MVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS   80 (275)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCSS
T ss_pred             ceEEEEeec-cHHHHHHHHHHHHHHcCCCCCcCcccccccCCCCCCcEEEEEecCCcchhHHHHHHHHHhchhhhhhhhc
Confidence            899999997 9999999887631                    125689999993  3567665432200        00


Q ss_pred             --CC-----------------CeeeecCHHHHHhccc---cCCCccEEEEcCC-----h----H---------------h
Q 025154           85 --PL-----------------EIPVMSDLTMVLGSIS---QSKARAVVIDFTD-----A----S---------------T  118 (257)
Q Consensus        85 --~~-----------------gv~v~~dl~~~l~~~~---~~~~~DVvIDFT~-----p----~---------------~  118 (257)
                        ..                 +.....++.+.++++.   ++.+.||+|..++     |    +               +
T Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~v~~i~~di~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~i~a  160 (275)
T d1vjpa1          81 DPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTA  160 (275)
T ss_dssp             CCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCCH
T ss_pred             ccCcccceecCccccccccccccccccchHHHHHHHHHHHHhcchhheeecccccccCCCCcHHHHHHHhhccCccccCh
Confidence              00                 0111112222222110   2246789998421     1    1               4


Q ss_pred             HHHHHHHHH-----HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch--HHHHHHHH
Q 025154          119 VYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQ  174 (257)
Q Consensus       119 ~~~~~~~a~-----~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS--lGvnll~~  174 (257)
                      +.-++.+|+     +.|++.|-+|+-+... ...+.++++++|+|++ .--|.  +|-.++..
T Consensus       161 S~~YA~AAL~~~~~~aG~~fVN~~P~~ia~-~Pal~ela~~~gvPi~-GdD~Ksq~G~Tiv~~  221 (275)
T d1vjpa1         161 TQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVF-GDDGSPALGGLLVDL  221 (275)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEE-CSSBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCceeEeccCccccC-CHHHHHHHHHcCCcEE-cccchhhhhHHHHHH
Confidence            444555666     8899999999977643 3578899999998887 22233  48777644

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.56  E-value=0.00013  Score=56.42  Aligned_cols=90  Identities=8%  Similarity=-0.029  Sum_probs=47.7

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCChH
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~  117 (257)
                      |+++| +|+||+.+++.+.  .+.++..++++..  ..+..+..   ..+. .+.+++++.+      .+|+||-...|+
T Consensus         2 IgfIG-~G~mg~~l~~~L~--~~~~~~~v~~R~~--~~~~~l~~---~~~~-~~~~~~~~~~------~~DiVil~v~d~   66 (153)
T d2i76a2           2 LNFVG-TGTLTRFFLECLK--DRYEIGYILSRSI--DRARNLAE---VYGG-KAATLEKHPE------LNGVVFVIVPDR   66 (153)
T ss_dssp             CEEES-CCHHHHHHHHTTC------CCCEECSSH--HHHHHHHH---HTCC-CCCSSCCCCC---------CEEECSCTT
T ss_pred             EEEEe-CcHHHHHHHHHHH--hCCCEEEEEeCCh--hhhcchhh---cccc-cccchhhhhc------cCcEEEEeccch
Confidence            68999 5999999998774  3566666676531  11222321   2232 2445666653      689988777666


Q ss_pred             hHHHHHHHHHHcCCCeEEeCCCCCH
Q 025154          118 TVYDNVKQATAFGMRSVVYVPHIQL  142 (257)
Q Consensus       118 ~~~~~~~~a~~~Gi~vViGTTG~s~  142 (257)
                      ...+.+......+.-+|-.+++.+.
T Consensus        67 ~i~~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          67 YIKTVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             THHHHHTTTCCSSCCEEECCSSSCG
T ss_pred             hhhHHHhhhcccceeeeecccchhh
Confidence            6666555433345544443344443

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=96.54  E-value=0.00077  Score=54.27  Aligned_cols=31  Identities=35%  Similarity=0.484  Sum_probs=27.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ||||.| .||+||.+.+++.++ ++++|++-|+
T Consensus         2 kIgING-fGRIGR~~~R~~~~~-~~~ivaINd~   32 (169)
T d1dssg1           2 KIGING-FGRIGRLVLRAALEM-GAQVVAVNDP   32 (169)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHH-TCCEEEEECT
T ss_pred             eEEEEC-CcHHHHHHHHHHHhC-CCcEEEECCC
Confidence            899999 599999999988865 6899998885

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0063  Score=43.19  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=24.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -||+|+|. |+.|+.+++.+.+ .+.++. ++|.
T Consensus         6 K~v~ViGl-G~sG~s~a~~L~~-~g~~v~-~~D~   36 (93)
T d2jfga1           6 KNVVIIGL-GLTGLSCVDFFLA-RGVTPR-VMDT   36 (93)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHH-TTCCCE-EEES
T ss_pred             CEEEEEeE-CHHHHHHHHHHHH-CCCEEE-EeeC
Confidence            48999995 9999999998775 466665 4564

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.38  E-value=0.0029  Score=49.83  Aligned_cols=88  Identities=19%  Similarity=0.230  Sum_probs=56.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +..||+|+|+ |.||+.+++.+.. .+..-+-++.+..  ..+..++.   +++  +..++++.+.+.      ++|+||
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~-~g~~~i~v~nRt~--~ka~~l~~---~~~~~~~~~~~~~~~l~------~~Divi   89 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVD-RGVRAVLVANRTY--ERAVELAR---DLGGEAVRFDELVDHLA------RSDVVV   89 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHH-HCCSEEEEECSSH--HHHHHHHH---HHTCEECCGGGHHHHHH------TCSEEE
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHh-cCCcEEEEEcCcH--HHHHHHHH---hhhcccccchhHHHHhc------cCCEEE
Confidence            4569999996 9999999999876 4665555666531  12222321   223  233678888875      799999


Q ss_pred             EcCC-hH--hHHHHHHHHHHc---CCCeE
Q 025154          112 DFTD-AS--TVYDNVKQATAF---GMRSV  134 (257)
Q Consensus       112 DFT~-p~--~~~~~~~~a~~~---Gi~vV  134 (257)
                      -.|. |.  ...++++..++.   +.|++
T Consensus        90 ~atss~~~ii~~~~i~~~~~~r~~~~~~~  118 (159)
T d1gpja2          90 SATAAPHPVIHVDDVREALRKRDRRSPIL  118 (159)
T ss_dssp             ECCSSSSCCBCHHHHHHHHHHCSSCCCEE
T ss_pred             EecCCCCccccHhhhHHHHHhcccCCCeE
Confidence            8773 32  446777766643   45644

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.30  E-value=0.019  Score=46.08  Aligned_cols=122  Identities=19%  Similarity=0.186  Sum_probs=68.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh-cCCCCCCeeeecCHHHHHhcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSI  101 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~g~~~-g~~~~~gv~v~~dl~~~l~~~  101 (257)
                      |||+|+| .|.+|..++..++ ..+++++ ++|...             ......+.+ ..........++|+++++.  
T Consensus         1 MkI~ViG-lG~vGl~~a~~la-~~g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~--   75 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLS-ARGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL--   75 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHH-HTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--
T ss_pred             CEEEEEC-CCHhHHHHHHHHH-hCCCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh--
Confidence            7999999 5999999997665 5688877 677420             001111111 0001223456788999885  


Q ss_pred             ccCCCccEEEEcC-Ch------------HhHHHHHHHHHH---cCCCeEEeCC---CCCHHHHHH-HHHHhhh---cCce
Q 025154          102 SQSKARAVVIDFT-DA------------STVYDNVKQATA---FGMRSVVYVP---HIQLETVSA-LSAFCDK---ASMG  158 (257)
Q Consensus       102 ~~~~~~DVvIDFT-~p------------~~~~~~~~~a~~---~Gi~vViGTT---G~s~e~~~~-L~~~a~~---~gip  158 (257)
                          .+|+++-+- +|            ..+.+.+...++   .+.-+|+.+|   |++.+.... +++..+.   ..+.
T Consensus        76 ----~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~  151 (202)
T d1mv8a2          76 ----DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFG  151 (202)
T ss_dssp             ----TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBE
T ss_pred             ----hCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccccccccccc
Confidence                689877553 22            233344444444   3345777766   666655444 3333221   1256


Q ss_pred             EEEccCch
Q 025154          159 CLIAPTLS  166 (257)
Q Consensus       159 vl~spNfS  166 (257)
                      ++++|=|-
T Consensus       152 ~~~~PE~~  159 (202)
T d1mv8a2         152 VGTNPEFL  159 (202)
T ss_dssp             EEECCCCC
T ss_pred             chhhhhhh
Confidence            77777654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.21  E-value=0.0052  Score=49.40  Aligned_cols=82  Identities=17%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             ccccccccccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee
Q 025154           12 MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM   91 (257)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~   91 (257)
                      +++..+++|+.........|.-.-.+|+|+| +|++|+.+++.+. .=++++.+ +|+..  .          +.....+
T Consensus        19 i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG-~G~IG~~va~~l~-~~g~~v~~-~d~~~--~----------~~~~~~~   83 (181)
T d1qp8a1          19 IIQYGEKMKRGDYGRDVEIPLIQGEKVAVLG-LGEIGTRVGKILA-ALGAQVRG-FSRTP--K----------EGPWRFT   83 (181)
T ss_dssp             HHHHHHHHHTTCCCCCSCCCCCTTCEEEEES-CSTHHHHHHHHHH-HTTCEEEE-ECSSC--C----------CSSSCCB
T ss_pred             HHHHHHHHHcCCCCCCCCCCcccCceEEEec-cccccccceeeee-cccccccc-ccccc--c----------ccceeee
Confidence            3444556665444332233333446899999 5999999999766 55788764 56431  1          1122346


Q ss_pred             cCHHHHHhccccCCCccEEEEcC
Q 025154           92 SDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +++++++.      .+|+|+-..
T Consensus        84 ~~l~ell~------~sDiv~~~~  100 (181)
T d1qp8a1          84 NSLEEALR------EARAAVCAL  100 (181)
T ss_dssp             SCSHHHHT------TCSEEEECC
T ss_pred             echhhhhh------ccchhhccc
Confidence            78999995      799888654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0068  Score=51.60  Aligned_cols=91  Identities=18%  Similarity=0.169  Sum_probs=55.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-------eecCHHHHHhccccCCCcc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-------VMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-------v~~dl~~~l~~~~~~~~~D  108 (257)
                      |||.|+|++|-+|+.+++.+.++...++.+ +|.....  ...+..   ...+.       -.+++.+...     .++|
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~-ld~~~~~--~~~~~~---~~~~~~i~~Di~~~~~~~~~~~-----~~~d   69 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYG-LDIGSDA--ISRFLN---HPHFHFVEGDISIHSEWIEYHV-----KKCD   69 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEE-EESCCGG--GGGGTT---CTTEEEEECCTTTCSHHHHHHH-----HHCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEE-EeCCCcc--hhhhcc---CCCeEEEECccCChHHHHHHHH-----hCCC
Confidence            699999999999999999988776677765 4532111  111111   11221       1223333232     3699


Q ss_pred             EEEEcCCh------------------HhHHHHHHHHHHcCCCeEEeC
Q 025154          109 VVIDFTDA------------------STVYDNVKQATAFGMRSVVYV  137 (257)
Q Consensus       109 VvIDFT~p------------------~~~~~~~~~a~~~Gi~vViGT  137 (257)
                      +||.+...                  ..+...+..|.+.++..++-.
T Consensus        70 ~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~s  116 (342)
T d2blla1          70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS  116 (342)
T ss_dssp             EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ccccccccccccccccCCccccccccccccccccccccccccccccc
Confidence            99997531                  114456778888888877643

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0098  Score=50.81  Aligned_cols=30  Identities=20%  Similarity=0.412  Sum_probs=26.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      |||.|+|++|-.|+.+++.+.+. +.+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~-g~~V~~~   30 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIIL   30 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEE
Confidence            79999999999999999998864 7898874

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0086  Score=44.42  Aligned_cols=36  Identities=28%  Similarity=0.495  Sum_probs=27.5

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      .....||+|+|+ |..||+++.... .=++++. ++|+.
T Consensus         8 ~~~~~kigIlGg-GQL~rMla~aA~-~lG~~v~-v~d~~   43 (111)
T d1kjqa2           8 RPAATRVMLLGS-GELGKEVAIECQ-RLGVEVI-AVDRY   43 (111)
T ss_dssp             STTCCEEEEESC-SHHHHHHHHHHH-TTTCEEE-EEESS
T ss_pred             CCCCCEEEEEeC-CHHHHHHHHHHH-HCCCEEE-EEcCC
Confidence            344569999995 999999998765 4588875 56753

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.021  Score=46.32  Aligned_cols=94  Identities=18%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +.||.|.||||-.|+.+++.+.++..+ ++.++..++. ..+.....    .....+  +.+++++.+.+   ..+|++|
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~-~~~~~~~~----~i~~~~~D~~~~~~~~~~~---~~~d~vi   85 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL-TFDEEAYK----NVNQEVVDFEKLDDYASAF---QGHDVGF   85 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC-CCCSGGGG----GCEEEECCGGGGGGGGGGG---SSCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh-hhcccccc----eeeeeeecccccccccccc---ccccccc
Confidence            358999999999999999999887764 5665543221 11111100    111111  22333333211   3789988


Q ss_pred             EcCC---------------hHhHHHHHHHHHHcCCCeEEe
Q 025154          112 DFTD---------------ASTVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus       112 DFT~---------------p~~~~~~~~~a~~~Gi~vViG  136 (257)
                      ....               .......+++|.+.|+.-++-
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~  125 (232)
T d2bkaa1          86 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNL  125 (232)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccccccccccchhhhhhhcccccceeeecccccCcccccc
Confidence            7531               113345778889999985544

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.08  E-value=0.0023  Score=52.65  Aligned_cols=59  Identities=25%  Similarity=0.406  Sum_probs=41.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      |||.|+|++|-+|+.+++.+. ..++++++. ++..  .|            +.-..+++++++.    .++|+||.+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~-~~g~~Vi~~-~r~~--~D------------~~d~~~~~~~l~~----~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLK-GKNVEVIPT-DVQD--LD------------ITNVLAVNKFFNE----KKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHT-TSSEEEEEE-CTTT--CC------------TTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCEEEEe-echh--cc------------CCCHHHHHHHHHH----cCCCEEEeec
Confidence            899999999999999999876 578998763 4321  11            1112344566653    4789999885

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=96.07  E-value=0.002  Score=53.13  Aligned_cols=86  Identities=15%  Similarity=0.231  Sum_probs=49.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT-  114 (257)
                      |||.|.|++|-+|+.+++.+.+ .+ +++.+ +...  ..   +     ..++.-...+++++..    .++|+||.+. 
T Consensus         1 MKILItG~tGfiG~~l~~~L~~-~g-~~v~~-~~~~--~~---~-----~~Dl~~~~~~~~~i~~----~~~D~Vih~Aa   63 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAP-VG-NLIAL-DVHS--KE---F-----CGDFSNPKGVAETVRK----LRPDVIVNAAA   63 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTT-TS-EEEEE-CTTC--SS---S-----CCCTTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CC-CEEEE-ECCC--cc---c-----cCcCCCHHHHHHHHHH----cCCCEEEEecc
Confidence            7999999999999999998764 33 44433 3211  00   0     0011112234455543    4789999974 


Q ss_pred             --C-------h--------HhHHHHHHHHHHcCCCeEEeCC
Q 025154          115 --D-------A--------STVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       115 --~-------p--------~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                        .       |        ......+.+|.+.++.++.-+|
T Consensus        64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss  104 (298)
T d1n2sa_          64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYST  104 (298)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cccccccccCccccccccccccccchhhhhccccccccccc
Confidence              1       1        1223445666677777665443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.008  Score=43.42  Aligned_cols=90  Identities=9%  Similarity=0.065  Sum_probs=54.1

Q ss_pred             CCCCCCceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCH-HHHHhccccCCCc
Q 025154           30 NPPQSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-TMVLGSISQSKAR  107 (257)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl-~~~l~~~~~~~~~  107 (257)
                      ++...+.||-++|. |++|. .+++.+ .+.++++.| .|... ......+.    +.|+.++... .+.+      .++
T Consensus         3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L-~~~G~~VsG-SD~~~-~~~~~~L~----~~Gi~v~~g~~~~~i------~~~   68 (96)
T d1p3da1           3 PEMRRVQQIHFIGI-GGAGMSGIAEIL-LNEGYQISG-SDIAD-GVVTQRLA----QAGAKIYIGHAEEHI------EGA   68 (96)
T ss_dssp             CCCTTCCEEEEETT-TSTTHHHHHHHH-HHHTCEEEE-EESCC-SHHHHHHH----HTTCEEEESCCGGGG------TTC
T ss_pred             ccchhCCEEEEEEE-CHHHHHHHHHHH-HhCCCEEEE-EeCCC-ChhhhHHH----HCCCeEEECCccccC------CCC
Confidence            45667789999996 99994 456654 567898776 57431 22233333    3466664322 2233      267


Q ss_pred             cEEEEcCC-hHhHHHHHHHHHHcCCCeE
Q 025154          108 AVVIDFTD-ASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       108 DVvIDFT~-p~~~~~~~~~a~~~Gi~vV  134 (257)
                      |+||--+. |+... .+.+|.++|+|+|
T Consensus        69 d~vV~S~AI~~~np-el~~A~~~gipii   95 (96)
T d1p3da1          69 SVVVVSSAIKDDNP-ELVTSKQKRIPVI   95 (96)
T ss_dssp             SEEEECTTSCTTCH-HHHHHHHTTCCEE
T ss_pred             CEEEECCCcCCCCH-HHHHHHHcCCCEE
Confidence            87764332 44433 3666888888875

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.96  E-value=0.016  Score=49.74  Aligned_cols=32  Identities=28%  Similarity=0.289  Sum_probs=27.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .|||.|+|++|-+|+.+++.+.+ .+.++++ +|
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~-~g~~V~~-~d   46 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKH-EGHYVIA-SD   46 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEE-Ee
Confidence            58999999999999999999875 5788886 44

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.94  E-value=0.0069  Score=52.69  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=28.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||.|+|++|-+|+.+++.+.+. +.+++.++|.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~-g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKN-TQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHH-CSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeC
Confidence            69999999999999999998754 6777778874

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.91  E-value=0.1  Score=40.22  Aligned_cols=71  Identities=21%  Similarity=0.169  Sum_probs=44.2

Q ss_pred             CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhh---hhcCCCCCCeeeecCHHHHHhcccc
Q 025154           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGM---VCDMEQPLEIPVMSDLTMVLGSISQ  103 (257)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~g~---~~g~~~~~gv~v~~dl~~~l~~~~~  103 (257)
                      .+.+.||+|+|+ |..|+.++-.+...+=.+|+ .+|...   .|  .|...   +.+  ....+...+++++.+.    
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~--~~~~~~~~~~~~~~~~----   75 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVD--TNVSVRAEYSYEAALT----   75 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHTT--CCCCEEEECSHHHHHT----
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEE-EEEeccccchhHHHHHhhhccccC--CeeEEeccCchhhhhc----
Confidence            456789999997 99999999877766545866 777431   01  11111   111  1223344567777774    


Q ss_pred             CCCccEEEE
Q 025154          104 SKARAVVID  112 (257)
Q Consensus       104 ~~~~DVvID  112 (257)
                        ++|+||.
T Consensus        76 --~adiVvi   82 (154)
T d1pzga1          76 --GADCVIV   82 (154)
T ss_dssp             --TCSEEEE
T ss_pred             --CCCeEEE
Confidence              7898774

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.033  Score=43.53  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~   69 (257)
                      |-||.|.|+||.+|+...+.+.+.| .+++++....
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~   36 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   36 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            5689999999999999999998886 5899998763

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.87  E-value=0.024  Score=44.21  Aligned_cols=35  Identities=17%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~   69 (257)
                      |.||+|.|+||-+|+...+.+.+.| .++|++....
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~   37 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN   37 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC
Confidence            5799999999999999999998876 5999998764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.82  E-value=0.006  Score=47.36  Aligned_cols=72  Identities=14%  Similarity=0.109  Sum_probs=42.0

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (257)
                      ..+||+|+|+ |.+|..++-.+...+-..=+..+|...   .|  .|....... .........|++++-       ++|
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~-~~~~~~~~~d~~~~~-------~ad   74 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAF-TAPKKIYSGEYSDCK-------DAD   74 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGG-SCCCEEEECCGGGGT-------TCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccc-cCCceEeeccHHHhc-------ccc
Confidence            3579999996 999999998888765432244677431   01  122111111 122334456776652       789


Q ss_pred             EEEEcC
Q 025154          109 VVIDFT  114 (257)
Q Consensus       109 VvIDFT  114 (257)
                      ++|-..
T Consensus        75 ivvita   80 (146)
T d1ez4a1          75 LVVITA   80 (146)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            888643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.014  Score=45.46  Aligned_cols=95  Identities=15%  Similarity=0.156  Sum_probs=52.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeec--CHHHHHhccccCCCccEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMS--DLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv---~v~~--dl~~~l~~~~~~~~~DVvI  111 (257)
                      +|.|+|++|.+|...++.+ ..-++++++..+++.   .. +++   .++|.   .-++  |+.+.+.+...+..+|+++
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a-~~~G~~vi~~~~~~~---~~-~~~---~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~  102 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEE---GQ-KIV---LQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII  102 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHH---HH-HHH---HHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred             EEEEEeccccccccccccc-cccCccccccccccc---cc-ccc---cccCcccccccccccHHHHhhhhhccCCceEEe
Confidence            6999999999999999865 466899888776421   01 111   01221   1122  2323221111124578888


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      |++..+.....+......|.=+++|..+
T Consensus       103 d~~g~~~~~~~~~~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2         103 EMLANVNLSKDLSLLSHGGRVIVVGSRG  130 (174)
T ss_dssp             ESCHHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             ecccHHHHHHHHhccCCCCEEEEEecCC
Confidence            8776544333344444456556666553

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.75  E-value=0.13  Score=37.69  Aligned_cols=119  Identities=14%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e------cCHHHH-HhccccCCCcc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M------SDLTMV-LGSISQSKARA  108 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~------~dl~~~-l~~~~~~~~~D  108 (257)
                      |+.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  +.+.++.    ..+..+ +      +.++++ +      .++|
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~-~g~~vvv-id~d~--~~~~~~~----~~~~~~~~gd~~~~~~l~~a~i------~~a~   66 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHR-MGHEVLA-VDINE--EKVNAYA----SYATHAVIANATEENELLSLGI------RNFE   66 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHH-TTCCCEE-EESCH--HHHHHTT----TTCSEEEECCTTCTTHHHHHTG------GGCS
T ss_pred             EEEEECC-CHHHHHHHHHHHH-CCCeEEE-ecCcH--HHHHHHH----HhCCcceeeecccchhhhccCC------cccc
Confidence            6899995 9999999998874 5777664 66421  1111111    112211 1      122332 2      3678


Q ss_pred             EEEEc-CChHhH-HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154          109 VVIDF-TDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (257)
Q Consensus       109 VvIDF-T~p~~~-~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~  175 (257)
                      ++|-. +..+.. .-....+..++.+-++..+- +.+..+.|+    +.|+-.++.|-.-.|..|.+.+
T Consensus        67 ~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~-~~~~~~~l~----~~Gad~vi~p~~~~a~~la~~l  130 (134)
T d2hmva1          67 YVIVAIGANIQASTLTTLLLKELDIPNIWVKAQ-NYYHHKVLE----KIGADRIIHPEKDMGVKIAQSL  130 (134)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC-SHHHHHHHH----HHTCSEEECHHHHHHHHHHHHH
T ss_pred             EEEEEcCchHHhHHHHHHHHHHcCCCcEEeecc-cHhHHHHHH----HCCCCEEEChHHHHHHHHHHHH
Confidence            66543 333333 33334445666665655442 344445554    4578889999988887665444

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=95.72  E-value=0.15  Score=40.17  Aligned_cols=124  Identities=11%  Similarity=0.053  Sum_probs=67.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcC----C-cEEEEEEecCC-----CCcchhhhhcCC--CCCCeeeecCHHHHHhcc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKAR----G-MEVAGAIDSHS-----VGEDIGMVCDME--QPLEIPVMSDLTMVLGSI  101 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~----~-~eLvg~vd~~~-----~g~d~g~~~g~~--~~~gv~v~~dl~~~l~~~  101 (257)
                      .++||.|+||+|.+|+.++-.+++.+    + ....-.+|.+.     .|... ++....  ....+.++++..+.+.  
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~m-dl~d~a~~~~~~~~~~~~~~~~~~--   99 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM-ELEDSLYPLLREVSIGIDPYEVFE--   99 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHTTTCTTEEEEEEESCHHHHTT--
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhh-hhcccccccccCccccccchhhcc--
Confidence            46899999999999999998776432    1 11223445321     01110 111110  0124556788888885  


Q ss_pred             ccCCCccEEEEcC-C---hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHH
Q 025154          102 SQSKARAVVIDFT-D---ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (257)
Q Consensus       102 ~~~~~~DVvIDFT-~---p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~  177 (257)
                          ++||||-.. .   |.....-   .++.+.+++       .+..+.|.+.|.+ .+-|++..|-   +|++..++.
T Consensus       100 ----~aDvVvi~ag~~rkpg~tR~D---ll~~N~~I~-------k~~~~~i~~~a~~-~~~vlvv~NP---vd~~t~ia~  161 (175)
T d7mdha1         100 ----DVDWALLIGAKPRGPGMERAA---LLDINGQIF-------ADQGKALNAVASK-NVKVLVVGNP---CNTNALICL  161 (175)
T ss_dssp             ----TCSEEEECCCCCCCTTCCHHH---HHHHHHHHH-------HHHHHHHHHHSCT-TCEEEECSSS---HHHHHHHHH
T ss_pred             ----CCceEEEeeccCCCCCCcHHH---HHHHHHHHH-------HHHHHHHHhhCCC-CcEEEEecCc---HHHHHHHHH
Confidence                799888543 1   2111111   111122222       3555677777753 2678888994   666666554


Q ss_pred             H
Q 025154          178 S  178 (257)
Q Consensus       178 ~  178 (257)
                      .
T Consensus       162 k  162 (175)
T d7mdha1         162 K  162 (175)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.013  Score=47.13  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=25.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ||+|+|+ |.||+.|+..++ ..|++++ ++|.
T Consensus         6 kvaViGa-G~mG~~iA~~~a-~~G~~V~-l~D~   35 (192)
T d1f0ya2           6 HVTVIGG-GLMGAGIAQVAA-ATGHTVV-LVDQ   35 (192)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEE-EECS
T ss_pred             EEEEECc-CHHHHHHHHHHH-hCCCcEE-EEEC
Confidence            8999996 999999998766 5788866 6764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.65  E-value=0.021  Score=47.63  Aligned_cols=30  Identities=20%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ||.|+|++|-+|+.+++.+.+ .++++++ +|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~-~g~~V~~-id   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALS-QGIDLIV-FD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EE
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CcCEEEE-EE
Confidence            899999999999999998876 4899887 54

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.44  E-value=0.0067  Score=46.25  Aligned_cols=32  Identities=16%  Similarity=0.403  Sum_probs=25.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||+|+|++|.||+.+++.++ +.+++++-. ++
T Consensus         1 Mki~vigGaG~iG~alA~~la-~~G~~V~l~-~R   32 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLA-TLGHEIVVG-SR   32 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEE-ES
T ss_pred             CEEEEEeCCcHHHHHHHHHHH-HCCCEEEEE-EC
Confidence            799999657999999999887 568887743 44

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.022  Score=48.15  Aligned_cols=30  Identities=20%  Similarity=0.287  Sum_probs=26.6

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      -||.|+|++|-+|+.+++.+.+ .+.+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~-~g~~V~~~   31 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMM-DGHEVTVV   31 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEEE
Confidence            5899999999999999999875 58998875

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.40  E-value=0.022  Score=46.19  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ++.||.|+||+|.+|+.+++.+.+ .+.++.++..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~-~G~~V~~l~R   35 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLD-LGHPTFLLVR   35 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEC
Confidence            578999999999999999999875 5788887553

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.34  E-value=0.0045  Score=48.64  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=26.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~v   67 (257)
                      .|.+|.|.|++|.+|+.+++.+.+.. .+.+++..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~   36 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   36 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEc
Confidence            47799999999999999999988542 35555443

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.021  Score=47.70  Aligned_cols=30  Identities=20%  Similarity=0.215  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEE
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv   64 (257)
                      ++.||.|+|++|-.|+.+++.+.+. +.+++
T Consensus         1 ~kkkIlITG~tGfiG~~l~~~L~~~-g~~vi   30 (315)
T d1e6ua_           1 AKQRVFIAGHRGMVGSAIRRQLEQR-GDVEL   30 (315)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTC-TTEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHC-cCEEE
Confidence            3569999999999999999998764 55544

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.33  E-value=0.034  Score=45.53  Aligned_cols=34  Identities=24%  Similarity=0.228  Sum_probs=28.8

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .+.||.|+|++|-+|+.+++.+.+ .++++.++..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~-~G~~V~~~~R   35 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFR   35 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEEC
Confidence            467999999999999999998875 5788887654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.28  E-value=0.045  Score=42.05  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=26.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      ||+|+||+|++|+.++-.+...+-+.=...+|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            8999998899999999888766554444567753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.25  E-value=0.0064  Score=46.67  Aligned_cols=32  Identities=19%  Similarity=0.402  Sum_probs=25.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      |||+|+|+ |.+|+.++-.+...+-. ||+ .+|.
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~-L~Di   33 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDV   33 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEE-Eecc
Confidence            79999996 99999999888765433 554 6784

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.045  Score=44.92  Aligned_cols=93  Identities=19%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeeec--
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVMS--   92 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----~~g~~~~~gv~v~~--   92 (257)
                      -||+|+|+ |..|..++..+.. -|+.=..++|...                .|+.-.+     +........+..+.  
T Consensus        31 ~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~  108 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLAS-AGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  108 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHH-cCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhh
Confidence            48999996 9999999998874 4676666777321                1111111     11110111222221  


Q ss_pred             ----CHHHHHhccccCCCccEEEEcCCh-HhHHHHHHHHHHcCCCeEEe
Q 025154           93 ----DLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVY  136 (257)
Q Consensus        93 ----dl~~~l~~~~~~~~~DVvIDFT~p-~~~~~~~~~a~~~Gi~vViG  136 (257)
                          +....+      ...|++||.+.. +.....-++|.++++|+|.|
T Consensus       109 ~~~~~~~~~~------~~~divid~~d~~~~~~~in~~~~~~~ip~i~g  151 (247)
T d1jw9b_         109 LDDAELAALI------AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSG  151 (247)
T ss_dssp             CCHHHHHHHH------HTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             hhhccccccc------cccceeeeccchhhhhhhHHHHHHHhCCCcccc
Confidence                222333      368999999864 44456668888999999987

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.15  E-value=0.043  Score=46.67  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=26.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (257)
                      ||||.|+|++|-+|+.+++.+.+. .++++++ +|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~-~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV-LD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE-EE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE-Ee
Confidence            899999999999999999998765 3455554 55

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.98  E-value=0.018  Score=44.81  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=26.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +|.|+|++|.+|+..++.+. .-++++++.+.+
T Consensus        28 ~VlI~ga~g~vG~~~iqla~-~~g~~vi~~~~~   59 (183)
T d1pqwa_          28 RVLIHSATGGVGMAAVSIAK-MIGARIYTTAGS   59 (183)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HHTCEEEEEESS
T ss_pred             EEEEECCCCCcccccchhhc-cccccceeeecc
Confidence            69999999999999998765 568898887754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.0078  Score=46.70  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=24.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~   69 (257)
                      |||+|+|++|++|+.++-.+... +-..-+..+|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~   35 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecc
Confidence            79999998899999998766533 43333446674

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.026  Score=43.71  Aligned_cols=119  Identities=11%  Similarity=0.076  Sum_probs=61.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC-
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD-  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~-  115 (257)
                      +|+|.|+ |.+|...++.+. .-+.+.++ ++....-.+...-+|.   ..+..+.+.+.....   ...+|++||++. 
T Consensus        33 ~VlI~Ga-G~vG~~a~qlak-~~Ga~~i~-~~~~~~~~~~a~~lGa---d~~i~~~~~~~~~~~---~~~~D~vid~~g~  103 (168)
T d1uufa2          33 KVGVVGI-GGLGHMGIKLAH-AMGAHVVA-FTTSEAKREAAKALGA---DEVVNSRNADEMAAH---LKSFDFILNTVAA  103 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEEE-EESSGGGHHHHHHHTC---SEEEETTCHHHHHTT---TTCEEEEEECCSS
T ss_pred             EEEEecc-chHHHHHHHHhh-cccccchh-hccchhHHHHHhccCC---cEEEECchhhHHHHh---cCCCceeeeeeec
Confidence            6999996 999999998665 56888885 5532111121111111   112223333333221   146899999985 


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      +......+..+...|.-+++|.++-.........-..++  +.+.-+.+.+
T Consensus       104 ~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~--~~i~Gs~~~~  152 (168)
T d1uufa2         104 PHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKR--RAIAGSMIGG  152 (168)
T ss_dssp             CCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTT--CEEEECCSCC
T ss_pred             chhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCC--cEEEEEeecC
Confidence            444555555555556666676653222111112222344  6777655544

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.79  E-value=0.008  Score=47.48  Aligned_cols=103  Identities=15%  Similarity=0.131  Sum_probs=54.7

Q ss_pred             CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCC
Q 025154           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKA  106 (257)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~  106 (257)
                      -.|.+   +|+|+|+ |.+|...++.+. .-+.+-+-++|+...-.+..+-.|.   ..+..+  .++.+.+.++-.+..
T Consensus        25 ~~~g~---~VlI~Ga-G~vGl~~~q~ak-~~Ga~~Vi~~d~~~~r~~~a~~lGa---~~~i~~~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          25 IEMGS---SVVVIGI-GAVGLMGIAGAK-LRGAGRIIGVGSRPICVEAAKFYGA---TDILNYKNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             CCTTC---CEEEECC-SHHHHHHHHHHH-TTTCSCEEEECCCHHHHHHHHHHTC---SEEECGGGSCHHHHHHHHTTTSC
T ss_pred             CCCCC---EEEEEcC-Ccchhhhhhhhh-cccccccccccchhhhHHHHHhhCc---cccccccchhHHHHHHHHhhccC
Confidence            34555   5999996 999999998766 5676545567643100111111111   001111  223332221111234


Q ss_pred             ccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          107 RAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       107 ~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      +|++||++- ++.....+..+...|.-+++|.++
T Consensus        97 ~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          97 VDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             EEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             cceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence            888888884 444455555556666766777654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.79  E-value=0.12  Score=42.96  Aligned_cols=116  Identities=15%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC------------CCCeeeecCHHHH
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------------PLEIPVMSDLTMV   97 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~------------~~gv~v~~dl~~~   97 (257)
                      -.+|+|.| .|.+|+.+++.+. +.+.+++++.|+.     ..|-|+..+.....            ..+.....+.+++
T Consensus        31 g~~v~IqG-fGnVG~~~a~~L~-~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  108 (242)
T d1v9la1          31 GKTVAIQG-MGNVGRWTAYWLE-KMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAI  108 (242)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGG
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchh
Confidence            35899999 5999999999886 5689999998842     33555443321100            1122333455677


Q ss_pred             HhccccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus        98 l~~~~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      +.     .++||+|=+...... .+++.   +.+..+|++..  -++++..+.|    +++|  |+|.|-|.
T Consensus       109 ~~-----~~~DIliPcA~~~~I~~~~a~---~i~ak~IvegAN~p~t~~a~~~L----~~rg--I~~~PD~~  166 (242)
T d1v9la1         109 FK-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAERIL----YERG--VVVVPDIL  166 (242)
T ss_dssp             GG-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHHHHH----HTTT--CEEECHHH
T ss_pred             cc-----ccccEEeecchhccccHHHHH---hcccCEEEecCCCCCChhHHHHH----HhCC--eEEeCchh
Confidence            76     489999988754333 23332   45778998765  2455443333    3434  55556553

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.78  E-value=0.024  Score=44.45  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=26.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +|.|.|++|..|++.+++.. .-+.++++...+
T Consensus        32 ~VlV~ga~ggvG~~aiqlak-~~Ga~vi~~~~~   63 (182)
T d1v3va2          32 TVLVSAAAGAVGSVVGQIAK-LKGCKVVGAAGS   63 (182)
T ss_dssp             EEEESSTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             EEEEEeCCCchhHHHHHHHH-ccCCEEEEeCCC
Confidence            59999999999999998654 678999987753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.72  E-value=0.036  Score=39.39  Aligned_cols=84  Identities=17%  Similarity=0.171  Sum_probs=51.5

Q ss_pred             ceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC-HHHHHhccccCCCccEEEEc
Q 025154           36 IKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d-l~~~l~~~~~~~~~DVvIDF  113 (257)
                      |||=++|. |.+|.. +++ +..+.++.+.| .|... ......+.    ..|++++.. -.+.+      .++|+||--
T Consensus         2 ~~ihfiGI-gG~GMs~LA~-~L~~~G~~VsG-SD~~~-~~~t~~L~----~~Gi~i~~gh~~~~i------~~~d~vV~S   67 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVAL-HEFSNGNDVYG-SNIEE-TERTAYLR----KLGIPIFVPHSADNW------YDPDLVIKT   67 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHH-HHHHTTCEEEE-ECSSC-CHHHHHHH----HTTCCEESSCCTTSC------CCCSEEEEC
T ss_pred             cEEEEEeE-CHHHHHHHHH-HHHhCCCeEEE-EeCCC-ChhHHHHH----HCCCeEEeeeccccc------CCCCEEEEe
Confidence            79999996 999964 555 55578997765 56432 22222332    457777532 12223      268887744


Q ss_pred             CC-hHhHHHHHHHHHHcCCCeE
Q 025154          114 TD-ASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       114 T~-p~~~~~~~~~a~~~Gi~vV  134 (257)
                      +. |+. ...+.+|.++|+|+.
T Consensus        68 sAI~~~-npel~~A~~~gIpv~   88 (89)
T d1j6ua1          68 PAVRDD-NPEIVRARMERVPIE   88 (89)
T ss_dssp             TTCCTT-CHHHHHHHHTTCCEE
T ss_pred             cCcCCC-CHHHHHHHHcCCCcc
Confidence            42 333 344788889999875

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.69  E-value=0.022  Score=43.73  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=25.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      |||+|+|+ |++|..++-.+...+-+ ||+ .+|.
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di   33 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIA-LVDI   33 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEE-EECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEE-EEec
Confidence            79999996 99999999888766554 444 5774

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.65  E-value=0.0045  Score=48.68  Aligned_cols=32  Identities=34%  Similarity=0.477  Sum_probs=26.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +|.|.|++|.+|+..++.+. ..+++++++..+
T Consensus        30 ~VlI~ga~G~vG~~aiqlak-~~G~~vi~~~~~   61 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVAR-AMGLRVLAAASR   61 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             EEEEEeccccchhhhhhhhc-cccccccccccc
Confidence            69999999999999998654 568998887654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.60  E-value=0.048  Score=43.03  Aligned_cols=31  Identities=16%  Similarity=0.242  Sum_probs=25.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAG   65 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg   65 (257)
                      +.||.|+||||-+|+.+++.+.+++.. ++..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~   33 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIA   33 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEE
Confidence            469999999999999999999887765 4443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.54  E-value=0.022  Score=44.88  Aligned_cols=94  Identities=16%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee------ec-CHHHHHhccccCCCccE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV------MS-DLTMVLGSISQSKARAV  109 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v------~~-dl~~~l~~~~~~~~~DV  109 (257)
                      +|+|+|+ |.+|...++.+. .-+..-+-+.|+...-.+..+      ++|...      .+ ..+...... ....+|+
T Consensus        31 ~VlV~G~-G~iGl~a~~~ak-~~Ga~~Vi~~d~~~~r~~~a~------~~Ga~~~i~~~~~~~~~~~~~~~~-~~~G~d~  101 (174)
T d1e3ia2          31 TCAVFGL-GCVGLSAIIGCK-IAGASRIIAIDINGEKFPKAK------ALGATDCLNPRELDKPVQDVITEL-TAGGVDY  101 (174)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHH------HTTCSEEECGGGCSSCHHHHHHHH-HTSCBSE
T ss_pred             EEEEECC-ChHHHHHHHHHH-HhCCceeeeeccchHHHHHHH------HhCCCcccCCccchhhhhhhHhhh-hcCCCcE
Confidence            6999996 999999998765 557766666775321111221      222211      11 122222100 1146888


Q ss_pred             EEEcCChHhHHHHHHHHH-H-cCCCeEEeCCC
Q 025154          110 VIDFTDASTVYDNVKQAT-A-FGMRSVVYVPH  139 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~-~-~Gi~vViGTTG  139 (257)
                      +||++-.+.+.+....++ . .|.-+++|.++
T Consensus       102 vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2         102 SLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             EEESSCCHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             EEEecccchHHHHHHHHhhcCCeEEEecCCCC
Confidence            888885555555555554 4 26777777653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.47  E-value=0.019  Score=44.30  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=25.1

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      |-||+|+|+ |++|+.++-.+....-+ ||+ .+|.
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~Elv-L~D~   34 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIV-LEDI   34 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EEEe
Confidence            458999996 99999999877755443 555 6774

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.40  E-value=0.012  Score=45.22  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      |||+|+|+ |.+|+.++-.+...+-. ||+ .+|.
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~-L~Di   33 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMV-LIDV   33 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEec
Confidence            79999996 99999999877765543 444 6774

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.38  E-value=0.12  Score=42.72  Aligned_cols=117  Identities=15%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-------CCCCeeeecCHHHHHhccc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSIS  102 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~-------~~~gv~v~~dl~~~l~~~~  102 (257)
                      ..||+|-| .|++|+.+++.+.+..+..++++.|+.     ..|-|..++....       ...+.. +-+.++++.   
T Consensus        31 g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---  105 (234)
T d1b26a1          31 KATVAVQG-FGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLE---  105 (234)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCE-EECHHHHHT---
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccce-eeccccccc---
Confidence            46899999 599999999988766699999998843     3355544332110       001111 235677886   


Q ss_pred             cCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       103 ~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                        .++||+|=+...... .+++   -+...++|++..  -++++..+.   +.++   .|+|.|-|-.
T Consensus       106 --~~~DI~~PcA~~~~I~~~~a---~~l~~~~I~e~AN~p~t~~a~~~---L~~r---gI~~~PD~~a  162 (234)
T d1b26a1         106 --LDVDILVPAALEGAIHAGNA---ERIKAKAVVEGANGPTTPEADEI---LSRR---GILVVPDILA  162 (234)
T ss_dssp             --SCCSEEEECSCTTCBCHHHH---TTCCCSEEECCSSSCBCHHHHHH---HHHT---TCEEECHHHH
T ss_pred             --cccceeecchhcccccHHHH---HHhhhceEeecCCCCCCHHHHHH---HHHC---CeEEechHHh
Confidence              489999977665444 3333   355678898875  345543222   3333   4666676643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.25  E-value=0.018  Score=45.43  Aligned_cols=98  Identities=14%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecC-HHHHHhccccCCCccEEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSD-LTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~d-l~~~l~~~~~~~~~DVvIDF  113 (257)
                      .|+|+|+ |.+|...++.+. ..+..-|-++|....-.+...-.|.  ..-+..  .++ .+++.+. -....+|++||+
T Consensus        32 tVlI~G~-GgvGl~ai~~ak-~~G~~~Vi~vd~~~~kl~~Ak~~GA--~~~in~~~~~~~~~~~~~~-~~g~G~d~vi~~  106 (176)
T d1d1ta2          32 TCVVFGL-GGVGLSVIMGCK-SAGASRIIGIDLNKDKFEKAMAVGA--TECISPKDSTKPISEVLSE-MTGNNVGYTFEV  106 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHHHTC--SEEECGGGCSSCHHHHHHH-HHTSCCCEEEEC
T ss_pred             EEEEECC-CchhHHHHHHHH-HcCCceEEEecCcHHHHHHHHhcCC--cEEECccccchHHHHHHHH-hccccceEEEEe
Confidence            3999996 999999998766 4564433456643211222221111  000000  111 2222210 012479999999


Q ss_pred             CChHhHHHHHHHHH-Hc-CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQAT-AF-GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~-~~-Gi~vViGTTG  139 (257)
                      +....+......++ +. |+-+++|.+.
T Consensus       107 ~g~~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         107 IGHLETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             SCCHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             CCchHHHHHHHHHhhcCCeEEEEEEccc
Confidence            87666655544433 44 6777788764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.02  E-value=0.045  Score=44.08  Aligned_cols=63  Identities=21%  Similarity=0.189  Sum_probs=43.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .+|||+| +|++|+.+++.+. .=++++.+ +|+.. ..+...      ..++.-.+++++++.      .+|+|+-..
T Consensus        50 ktvgIiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~-~~~~~~------~~~~~~~~~l~~ll~------~sD~i~~~~  112 (193)
T d1mx3a1          50 ETLGIIG-LGRVGQAVALRAK-AFGFNVLF-YDPYL-SDGVER------ALGLQRVSTLQDLLF------HSDCVTLHC  112 (193)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHH-TTTCEEEE-ECTTS-CTTHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             ceEEEec-cccccccceeeee-ccccceee-ccCcc-cccchh------hhccccccchhhccc------cCCEEEEee
Confidence            5899999 5999999999876 55898875 56432 111111      224555779999996      689887543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.99  E-value=0.25  Score=37.59  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=25.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      .-||+|+|| |.+|+.++-.+...+-. ||+ .+|.
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~-L~Di   39 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDA   39 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEee
Confidence            359999997 99999999888766544 455 6774

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.83  E-value=0.18  Score=41.85  Aligned_cols=116  Identities=17%  Similarity=0.144  Sum_probs=71.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcC-------CCCCCeeeecCHHHHHhccc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDM-------EQPLEIPVMSDLTMVLGSIS  102 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~-------~~~~gv~v~~dl~~~l~~~~  102 (257)
                      ..+|+|.| .|++|+.+++.+.++-+..++++.|+.     ..|.|..++...       ..-.+... -+.++++.   
T Consensus        32 g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~---  106 (239)
T d1gtma1          32 GKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLE---  106 (239)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHH---
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-eccccccc---
Confidence            46899999 599999999988777799999999853     123343332210       00012222 25577887   


Q ss_pred             cCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       103 ~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                        .++||++-+...... .+++   -+.+..+|++-.  -++++..+.   +.++   .|+|.|-|-
T Consensus       107 --~~~DIl~PcA~~~~I~~~~a---~~i~ak~I~e~AN~p~t~ea~~~---L~~r---gI~~iPD~~  162 (239)
T d1gtma1         107 --LEVDVLAPAAIEEVITKKNA---DNIKAKIVAEVANGPVTPEADEI---LFEK---GILQIPDFL  162 (239)
T ss_dssp             --SCCSEEEECSCSCCBCTTGG---GGCCCSEEECCSSSCBCHHHHHH---HHHT---TCEEECHHH
T ss_pred             --ccccEEeeccccccccHHHH---HhccccEEEecCCCCCCHHHHHH---HHHC---CCEEecchh
Confidence              589999988754333 2233   356888998865  355543322   3333   456666554

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.71  E-value=0.032  Score=44.08  Aligned_cols=92  Identities=10%  Similarity=0.044  Sum_probs=56.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      .|.|.||+|.+|+..++.+. .-+.+.+.+++..   .+..                 .++..+    ..+|.+||.+.+
T Consensus        33 tVLI~gaaGgVG~~aiQlak-~~Ga~~vi~~~~~---~e~~-----------------~~l~~~----~gad~vi~~~~~   87 (187)
T d1vj1a2          33 TMVVSGAAGACGSLAGQIGH-LLGCSRVVGICGT---QEKC-----------------LFLTSE----LGFDAAVNYKTG   87 (187)
T ss_dssp             EEEESSTTSTTGGGHHHHHH-HTTCSEEEEEESS---HHHH-----------------HHHHHH----SCCSEEEETTSS
T ss_pred             EEEEECCCchhhHHHHHHHH-HcCCcceecccch---HHHH-----------------hhhhhc----ccceEEeeccch
Confidence            59999999999999998765 4566544433321   0000                 112211    368888988866


Q ss_pred             HhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcC
Q 025154          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (257)
Q Consensus       117 ~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~g  156 (257)
                      +.....-+ ....|+.+|+-+.|  .+..+..-+..+..|
T Consensus        88 ~~~~~~~~-~~~~GvDvv~D~vG--g~~~~~~~~~l~~~G  124 (187)
T d1vj1a2          88 NVAEQLRE-ACPGGVDVYFDNVG--GDISNTVISQMNENS  124 (187)
T ss_dssp             CHHHHHHH-HCTTCEEEEEESSC--HHHHHHHHTTEEEEE
T ss_pred             hHHHHHHH-HhccCceEEEecCC--chhHHHHhhhccccc
Confidence            55444444 34678999988887  344455444445533

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.41  E-value=0.05  Score=42.57  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=23.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      +|+|+|+ |.+|...++.+... +..-+.++|+.
T Consensus        30 ~VlV~Ga-GgvGl~a~~~ak~~-G~~~Vi~~d~~   61 (174)
T d1p0fa2          30 TCAVFGL-GGVGFSAIVGCKAA-GASRIIGVGTH   61 (174)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHH-TCSEEEEECSC
T ss_pred             EEEEECC-CchhHHHHHHHHHc-CCceeeccCCh
Confidence            5999996 99999999877644 55445567653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.36  E-value=0.07  Score=40.66  Aligned_cols=68  Identities=13%  Similarity=0.100  Sum_probs=40.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchh---hhhcCCCCCCeeeecCHHHHHhccccCCCc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIG---MVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g--~d~g---~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (257)
                      -||+|+|+ |++|..++-.+...+-.+|+ .+|....   |  .|..   .+..  ....+...+|++++.       ++
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~-l~D~~~~~~~~~~~Dl~~~~~~~~--~~~~i~~~~d~~~~~-------~a   70 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEG--FDVRVTGTNNYADTA-------NS   70 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEE-EECSSSSHHHHHHHHHHTTHHHHT--CCCCEEEESCGGGGT-------TC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEE-EEeeccccchhHHHHhhccccccC--CCCEEEecCcHHHhc-------CC
Confidence            48999996 99999999887766555755 4774310   1  1111   1111  112344467777753       68


Q ss_pred             cEEEEcC
Q 025154          108 AVVIDFT  114 (257)
Q Consensus       108 DVvIDFT  114 (257)
                      |++|...
T Consensus        71 dvvvita   77 (142)
T d1uxja1          71 DVIVVTS   77 (142)
T ss_dssp             SEEEECC
T ss_pred             CEEEEee
Confidence            9877543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.27  E-value=0.017  Score=45.48  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhcc---ccCCCccEEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSI---SQSKARAVVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~---~~~~~~DVvIDF  113 (257)
                      .|.|.||+|..|...++++. .-+.++++...+...   ...+.    .+|....-+.++...+.   .....+|++||.
T Consensus        26 ~VLV~gaaGgVG~~avQlAk-~~Ga~Viat~~s~~k---~~~~~----~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLN-KRGYDVVASTGNREA---ADYLK----QLGASEVISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHH-HHTCCEEEEESSSST---HHHHH----HHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             EEEEeCCcchHHHHHHHHHH-HcCCceEEEecCHHH---HHHHH----hhcccceEeccchhchhhhcccCCCceEEEec
Confidence            49999999999999998654 578999988764321   11111    12222212223221110   012368999999


Q ss_pred             CChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      --.+...+.+......|.-+++|.++
T Consensus        98 vgg~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          98 VGGKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             CCTHHHHHHHTTEEEEEEEEECCCSS
T ss_pred             CcHHHHHHHHHHhccCceEEEeeccC
Confidence            88777777777777777778888764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.23  E-value=0.073  Score=42.29  Aligned_cols=65  Identities=15%  Similarity=0.104  Sum_probs=43.4

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ...+|+|+| +|++|+.+++.+. .=++++. .+|+.....+...      ..++....++++++.      .+|+|+--
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~-~fg~~v~-~~d~~~~~~~~~~------~~~~~~~~~l~~~l~------~sD~v~~~  107 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLA-PFDVHLH-YTDRHRLPESVEK------ELNLTWHATREDMYP------VCDVVTLN  107 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHG-GGTCEEE-EECSSCCCHHHHH------HHTCEECSSHHHHGG------GCSEEEEC
T ss_pred             cccceeecc-ccccchhhhhhhh-ccCceEE-EEeeccccccccc------cccccccCCHHHHHH------hccchhhc
Confidence            457999999 5999999999775 4467755 4554321221111      234556789999995      69987654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.22  E-value=0.35  Score=39.39  Aligned_cols=76  Identities=26%  Similarity=0.353  Sum_probs=50.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      ++.|.|+++.+|+++++.+.+ .+.+++. .++..  ...                  +++.++    .... +..|+|.
T Consensus         7 ~~lITGas~GIG~aia~~l~~-~G~~V~~-~~r~~--~~l------------------~~~~~~----~~~~~~~~Dv~~   60 (242)
T d1ulsa_           7 AVLITGAAHGIGRATLELFAK-EGARLVA-CDIEE--GPL------------------REAAEA----VGAHPVVMDVAD   60 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHT----TTCEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHH----cCCeEEEEecCC
Confidence            578999999999999998874 5788664 45431  111                  122221    1121 5678999


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      ++...+.+..+.+.  ++.++|=..
T Consensus        61 ~~~v~~~~~~~~~~~g~iDilVnnA   85 (242)
T d1ulsa_          61 PASVERGFAEALAHLGRLDGVVHYA   85 (242)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEECC
Confidence            99998888887664  688887543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.08  E-value=0.38  Score=34.44  Aligned_cols=28  Identities=11%  Similarity=0.209  Sum_probs=22.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg   65 (257)
                      -||.|+|+ |+.|.+-++.+.+ .+.++.-
T Consensus        13 k~vlVvG~-G~va~~ka~~ll~-~ga~v~v   40 (113)
T d1pjqa1          13 RDCLIVGG-GDVAERKARLLLE-AGARLTV   40 (113)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTBEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCeEEE
Confidence            48999995 9999999998875 4676653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.02  E-value=0.25  Score=41.64  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      .+.+|+|+|++|.+|+.+++.+.+ .+.++.+.+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~-~G~~V~~l~R   35 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVH   35 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHh-CCCeEEEEEC
Confidence            456899999999999999999885 5889888764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.047  Score=42.19  Aligned_cols=97  Identities=16%  Similarity=0.137  Sum_probs=54.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEEEEcC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      +|.|+|+.|.+|+..++.+. ..+.++++...+..   ....+...+ ...+.-+  .|+.+-+.++..+..+|+++|+.
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak-~~Ga~Vi~~~~s~~---k~~~~~~lG-a~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~  105 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGTAQ---KAQSALKAG-AWQVINYREEDLVERLKEITGGKKVRVVYDSV  105 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHH-HHTCEEEEEESSHH---HHHHHHHHT-CSEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             EEEEEccccccchHHHHHHH-HhCCeEeecccchH---HHHHHHhcC-CeEEEECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence            69999999999999998665 57888887665321   011111010 0111112  23333332222234678888888


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      ..+............|.-+++|..
T Consensus       106 g~~~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2         106 GRDTWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             CGGGHHHHHHTEEEEEEEEECCCT
T ss_pred             cHHHHHHHHHHHhcCCeeeecccc
Confidence            776665555555556655555544

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.95  E-value=0.37  Score=39.17  Aligned_cols=78  Identities=22%  Similarity=0.236  Sum_probs=48.7

Q ss_pred             CCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (257)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (257)
                      +|+=..-++.|.|+++.+|+++++.+++ .+.+++. +++..  ...                  ++         -..+
T Consensus         2 ~psl~gK~~lITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~~------------------~~---------~~~~   50 (237)
T d1uzma1           2 KPPFVSRSVLVTGGNRGIGLAIAQRLAA-DGHKVAV-THRGS--GAP------------------KG---------LFGV   50 (237)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESSS--CCC------------------TT---------SEEE
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCc--chh------------------cC---------ceEE
Confidence            3443335789999999999999998874 6788764 44321  000                  00         1224


Q ss_pred             EEEcCChHhHHHHHHHHHHc--CCCeEEeCC
Q 025154          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      .+|.|.++...+.+..+.+.  ++.++|-..
T Consensus        51 ~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA   81 (237)
T d1uzma1          51 EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA   81 (237)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCSEEEEEC
T ss_pred             EEecCCHHHHHHHHHHHHHhcCCceEEEeee
Confidence            56677777777766666654  566666433

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.90  E-value=0.058  Score=42.22  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=26.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ..||+|+|+ |++|..++-.+...+-..=...+|.
T Consensus        19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~   52 (159)
T d2ldxa1          19 RCKITVVGV-GDVGMACAISILLKGLADELALVDA   52 (159)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            458999996 9999999988877655543446784

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.84  E-value=0.13  Score=39.82  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=24.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +|+|+|+ |.+|...++.+.. -+.+.+.++|+
T Consensus        31 ~VlI~G~-G~iG~~~~~~ak~-~g~~~v~~~~~   61 (174)
T d1f8fa2          31 SFVTWGA-GAVGLSALLAAKV-CGASIIIAVDI   61 (174)
T ss_dssp             EEEEESC-SHHHHHHHHHHHH-HTCSEEEEEES
T ss_pred             EEEEeCC-CHHHhhhhhcccc-cccceeeeecc
Confidence            6999997 9999999987654 46666777774

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.77  Score=34.78  Aligned_cols=95  Identities=18%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee---e--ecCHHHHHhcc--ccCCCccE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---V--MSDLTMVLGSI--SQSKARAV  109 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~---v--~~dl~~~l~~~--~~~~~~DV  109 (257)
                      +|+|+|+ |.||...++.+. ..+.+-+-++|+..   +--+++   .++|..   .  .++..+..+.+  -.+..+|+
T Consensus        29 ~VlI~G~-G~iG~~~~~~a~-~~G~~~Vi~~d~~~---~rl~~a---~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          29 KVLVCGA-GPIGMVTLLVAK-AMGAAQVVVTDLSA---TRLSKA---KEIGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCSEEEEEESCH---HHHHHH---HHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             EEEEECC-CccHHHHHHHHH-HcCCceEEeccCCH---HHHHHH---HHhCCcccccccccccccccccccccCCCCceE
Confidence            6999996 999999998765 45664444566431   001111   012211   1  12333322110  01135788


Q ss_pred             EEEcCChHhHHHHHHHHH-HcCCCeEEeCCC
Q 025154          110 VIDFTDASTVYDNVKQAT-AFGMRSVVYVPH  139 (257)
Q Consensus       110 vIDFT~p~~~~~~~~~a~-~~Gi~vViGTTG  139 (257)
                      +||++--+...+.+..++ ..|.-+++|.++
T Consensus       101 vid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2         101 TIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             EEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             EEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence            888886555555444444 444445555553

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.82  E-value=0.092  Score=40.25  Aligned_cols=92  Identities=12%  Similarity=0.029  Sum_probs=52.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee----cCHHHHHhccccCCCccEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+|.|+ |.+|...++.+.. -+...+.++++...-.+...-+|.  . .+..+    ++.++.+.+. ....+|++||
T Consensus        31 tVlI~Ga-GGvG~~aiq~ak~-~G~~~vi~~~~~~~k~~~ak~lGa--~-~~i~~~~~~~~~~~~~~~~-~~~g~D~vid  104 (176)
T d2fzwa2          31 VCAVFGL-GGVGLAVIMGCKV-AGASRIIGVDINKDKFARAKEFGA--T-ECINPQDFSKPIQEVLIEM-TDGGVDYSFE  104 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHHHTC--S-EEECGGGCSSCHHHHHHHH-TTSCBSEEEE
T ss_pred             EEEEecc-hhHHHHHHHHHHH-HhcCceEEEcccHHHHHHHHHhCC--c-EEEeCCchhhHHHHHHHHH-cCCCCcEeee
Confidence            5999997 8999999987665 466666666653211122111111  0 11111    2333333211 1136899999


Q ss_pred             cCChHhHHHHHHHHHHcCCCeE
Q 025154          113 FTDASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~Gi~vV  134 (257)
                      ++-...+.+.+..+++.|.-++
T Consensus       105 ~~G~~~~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         105 CIGNVKVMRAALEACHKGWGVS  126 (176)
T ss_dssp             CSCCHHHHHHHHHTBCTTTCEE
T ss_pred             cCCCHHHHHHHHHhhcCCceeE
Confidence            9877777777777777765544

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.81  E-value=0.037  Score=43.90  Aligned_cols=96  Identities=19%  Similarity=0.203  Sum_probs=53.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC-HHHHHhccccCCCccEEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d-l~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      +|.|.|++|.+|...++.+ +.-+.++++...++. -.+...-.|.  . .+.-+++ .++.... .....+|+|+|---
T Consensus        34 ~VLI~gaaGGVG~~aiQla-k~~Ga~Viat~~s~~-k~~~~~~lGa--~-~vi~~~~~~~~~~~~-~~~~gvD~vid~vg  107 (176)
T d1xa0a2          34 PVLVTGATGGVGSLAVSML-AKRGYTVEASTGKAA-EHDYLRVLGA--K-EVLAREDVMAERIRP-LDKQRWAAAVDPVG  107 (176)
T ss_dssp             CEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCTT-CHHHHHHTTC--S-EEEECC----------CCSCCEEEEEECST
T ss_pred             EEEEEeccchHHHHHHHHH-HHcCCceEEecCchH-HHHHHHhccc--c-eeeecchhHHHHHHH-hhccCcCEEEEcCC
Confidence            5999999999999999865 467999998776432 1111111111  1 1111222 2222211 12247899999765


Q ss_pred             hHhHHHHHHHHHHcCCCeEEeCC
Q 025154          116 ASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       116 p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      -+.....+......|.=+++|.+
T Consensus       108 g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         108 GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             chhHHHHHHHhCCCceEEEeecc
Confidence            55555555555555655567765

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.1  Score=44.67  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=24.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      +|.|+|++|-.|+.+++.+.+. +.+++++.
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~-g~~V~~~~   32 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEK-GYEVHGIK   32 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC-cCEEEEEE
Confidence            3559999999999999999864 88988654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.66  E-value=0.076  Score=40.72  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=48.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e--cCH-HHHHhccccCCCccEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M--SDL-TMVLGSISQSKARAVVID  112 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~--~dl-~~~l~~~~~~~~~DVvID  112 (257)
                      +|+|+|++|.+|...++.+... +..-+-++++.....+...-.|.    ...+ +  .|+ +++.+ ...+..+|++||
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~~-~~~~~~~d~vid  103 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAGA----DYVINASMQDPLAEIRR-ITESKGVDAVID  103 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHH-HTTTSCEEEEEE
T ss_pred             EEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHcCC----ceeeccCCcCHHHHHHH-Hhhcccchhhhc
Confidence            5999998899999999877755 44334455542101111110110    0111 1  122 22222 111235788888


Q ss_pred             cCChHhHHHHH-HHHHHcCCCeEEeCC
Q 025154          113 FTDASTVYDNV-KQATAFGMRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~-~~a~~~Gi~vViGTT  138 (257)
                      ++-.....+.+ ..+...|.=+++|.+
T Consensus       104 ~~g~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2         104 LNNSEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             SCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             ccccchHHHhhhhhcccCCEEEEeccc
Confidence            88655444443 333445555556654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.61  E-value=1.1  Score=34.75  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=24.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |||+|+| .|.+|-.++..+ + .+++++ ++|.
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a-~g~~V~-g~Di   30 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-S-LQNEVT-IVDI   30 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-T-TTSEEE-EECS
T ss_pred             CEEEEEC-CChhHHHHHHHH-H-CCCcEE-EEEC
Confidence            7999999 599999988544 4 589987 5673

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.60  E-value=0.074  Score=40.72  Aligned_cols=30  Identities=33%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +|+|+|+ |.||...++.+. ..+.++++ +|+
T Consensus        29 ~vlV~G~-G~vG~~~~~~ak-~~Ga~vi~-v~~   58 (170)
T d1e3ja2          29 TVLVIGA-GPIGLVSVLAAK-AYGAFVVC-TAR   58 (170)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEEE-EES
T ss_pred             EEEEEcc-cccchhhHhhHh-hhcccccc-cch
Confidence            6999995 999999998665 56788775 554

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.54  E-value=0.062  Score=46.25  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=29.0

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      -|||.|+|++|-+|+.+++.+.++.+.+|++ +|
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~-~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVI-VD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEE-EE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEE-Ee
Confidence            3699999999999999999998888999885 54

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.53  E-value=0.1  Score=40.82  Aligned_cols=45  Identities=20%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             cCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           21 AKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        21 ~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .|+..+++.-|.   -||+|+|+ |++|+.++-.+....-+.=+..+|.
T Consensus         9 ~~~~~~~~~~~~---~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~   53 (160)
T d1i0za1           9 APVAEEEATVPN---NKITVVGV-GQVGMACAISILGKSLADELALVDV   53 (160)
T ss_dssp             CCSSCSCCCCCS---SEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             cCcCcccccCCC---CeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            344445555553   39999996 9999999988876655443447784

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.43  E-value=0.16  Score=38.57  Aligned_cols=33  Identities=27%  Similarity=0.241  Sum_probs=24.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -||+|+|+ |.+|..++-.+...+-..=+..+|.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~   34 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDV   34 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEec
Confidence            38999997 9999999988776544332346773

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.31  E-value=0.15  Score=40.91  Aligned_cols=61  Identities=15%  Similarity=0.062  Sum_probs=41.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      -.+|+|+| +|++|+.+++.+. .=++++.+ +|+..  ......      .++ ...++++++.      .+|+++-.
T Consensus        43 gk~vgIiG-~G~IG~~va~~l~-~fg~~V~~-~d~~~--~~~~~~------~~~-~~~~l~~~l~------~sDii~~~  103 (197)
T d1j4aa1          43 DQVVGVVG-TGHIGQVFMQIME-GFGAKVIT-YDIFR--NPELEK------KGY-YVDSLDDLYK------QADVISLH  103 (197)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSC--CHHHHH------TTC-BCSCHHHHHH------HCSEEEEC
T ss_pred             CCeEEEec-ccccchhHHHhHh-hhcccccc-cCccc--cccccc------cee-eecccccccc------cccccccc
Confidence            35899999 6999999999875 56888875 56432  111111      112 2468999996      68988754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.12  E-value=0.42  Score=39.14  Aligned_cols=81  Identities=22%  Similarity=0.191  Sum_probs=51.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|.|+++.+|+++++.+++ .+..|+. +++..  .+..+..              +++.++    ...+   +..|.
T Consensus        11 ~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~~--------------~~~~~~----~g~~~~~~~~Dv   68 (260)
T d1h5qa_          11 TIIVTGGNRGIGLAFTRAVAA-AGANVAV-IYRSA--ADAVEVT--------------EKVGKE----FGVKTKAYQCDV   68 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTEEEEE-EESSC--TTHHHHH--------------HHHHHH----HTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHH----hCCceEEEEccC
Confidence            578899999999999998875 6888664 44431  1111111              111111    1222   45688


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.++.....+..+.+.  ++.++|-..|
T Consensus        69 ~~~~~v~~~~~~~~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          69 SNTDIVTKTIQQIDADLGPISGLIANAG   96 (260)
T ss_dssp             TCHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcEeccccc
Confidence            9999998888887764  5777765443

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.07  E-value=0.27  Score=41.33  Aligned_cols=30  Identities=27%  Similarity=0.509  Sum_probs=25.5

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      +| |.|+|++|-+|+.+++.+.+ .+.+++++
T Consensus         2 K~-ILVTGatGfIG~~lv~~Ll~-~g~~V~~~   31 (347)
T d1z45a2           2 KI-VLVTGGAGYIGSHTVVELIE-NGYDCVVA   31 (347)
T ss_dssp             CE-EEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CE-EEEeCCCcHHHHHHHHHHHH-CcCeEEEE
Confidence            44 88999999999999999885 47888874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.07  E-value=0.71  Score=37.67  Aligned_cols=81  Identities=11%  Similarity=0.133  Sum_probs=52.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|.|+++.+|+++++.+++ .+..|+. +++..  +...+.              .+++.++    ...+   +..|.
T Consensus         7 ~~lITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~--------------~~~l~~~----~g~~~~~~~~Dv   64 (251)
T d1vl8a_           7 VALVTGGSRGLGFGIAQGLAE-AGCSVVV-ASRNL--EEASEA--------------AQKLTEK----YGVETMAFRCDV   64 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH--------------HHHHHHH----HCCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH--------------HHHHHHH----hCCcEEEEEccC
Confidence            578999999999999998874 5787654 45421  111111              0122211    1233   34688


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.++...+.+..+.+.  ++.++|=..|
T Consensus        65 ~~~~~v~~~~~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          65 SNYEEVKKLLEAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            9999998888888764  6888886554

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.99  E-value=0.31  Score=39.50  Aligned_cols=82  Identities=13%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVI  111 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvI  111 (257)
                      |..|.|.|+++.+|+++++.+.+  ..+..|+.........++                  ++++...   ..++. +.+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~------------------~~~~~~~---~~~~~~~~~   60 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE------------------LEDLAKN---HSNIHILEI   60 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH------------------HHHHHHH---CTTEEEEEC
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH------------------HHHHHhc---CCcEEEEEE
Confidence            45699999999999999998864  567887754322211111                  1222221   01222 456


Q ss_pred             EcCChHhHHHHHHHH---HH-cCCCeEEeC
Q 025154          112 DFTDASTVYDNVKQA---TA-FGMRSVVYV  137 (257)
Q Consensus       112 DFT~p~~~~~~~~~a---~~-~Gi~vViGT  137 (257)
                      |.|.++...+.+...   .+ .++.+++--
T Consensus        61 Dvs~~~~v~~~~~~i~~~~~~~~iDiLvnN   90 (248)
T d1snya_          61 DLRNFDAYDKLVADIEGVTKDQGLNVLFNN   90 (248)
T ss_dssp             CTTCGGGHHHHHHHHHHHHGGGCCSEEEEC
T ss_pred             EeccHHHHHHHHhhhHHHhhcCCcceEEee
Confidence            788888877766653   23 357777644

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.99  E-value=0.093  Score=40.24  Aligned_cols=33  Identities=30%  Similarity=0.428  Sum_probs=26.0

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      |||+|+||+|.+|+.++-.+...+-+ ||+ .+|.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~-L~D~   34 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLV-LIGR   34 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEE-EEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccc-cccc
Confidence            79999998899999999888766533 544 6764

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.94  E-value=0.24  Score=41.48  Aligned_cols=118  Identities=10%  Similarity=0.145  Sum_probs=72.3

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcC---------C------CCCCeeeecCHH
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDM---------E------QPLEIPVMSDLT   95 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~---------~------~~~gv~v~~dl~   95 (257)
                      .||+|.| .|++|+..++.+.+ .+.+++++.|+.     ..|-|..++...         .      ...+... -+.+
T Consensus        37 ~~v~IQG-fGnVG~~~a~~L~e-~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  113 (255)
T d1bgva1          37 KTVALAG-FGNVAWGAAKKLAE-LGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQF-FPGE  113 (255)
T ss_dssp             CEEEECC-SSHHHHHHHHHHHH-HTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEE-EETC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHH-cCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCcee-echh
Confidence            5899999 59999999998874 589999998842     335554332210         0      0001111 1234


Q ss_pred             HHHhccccCCCccEEEEcCChHh-HHHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCceEEEccCch
Q 025154           96 MVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus        96 ~~l~~~~~~~~~DVvIDFT~p~~-~~~~~~~a~~~Gi~vViGTT-G-~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      +++.     .++||+|=+..... ..+++......|+.+|++-. + ++++..+   .+.+++|  |++.|-+-
T Consensus       114 ~~~~-----~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~---~ll~~~g--I~vvPD~l  177 (255)
T d1bgva1         114 KPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALR---FLMQQPN--MVVAPSKA  177 (255)
T ss_dssp             CGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHH---HHHHCTT--CEEECHHH
T ss_pred             hccc-----ccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHHH---HHHHhcC--CEEehHhh
Confidence            4555     48999886654333 36778888888999999865 3 4554322   2334434  55556553

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.94  E-value=0.048  Score=42.14  Aligned_cols=30  Identities=33%  Similarity=0.309  Sum_probs=24.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      +|+|+|+ |.+|...++.+. ..++++++ +|.
T Consensus        30 ~vlI~Ga-G~vG~~a~q~ak-~~G~~vi~-~~~   59 (168)
T d1piwa2          30 KVGIVGL-GGIGSMGTLISK-AMGAETYV-ISR   59 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HHTCEEEE-EES
T ss_pred             EEEEECC-CCcchhHHHHhh-hccccccc-ccc
Confidence            6999996 999999998665 56899876 554

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=91.92  E-value=0.76  Score=37.98  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKA   58 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~   58 (257)
                      |||.|+|++|-.|+.+++.+.+.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~   23 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAG   23 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC
Confidence            79999999999999999988753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.75  E-value=0.37  Score=37.14  Aligned_cols=123  Identities=14%  Similarity=0.062  Sum_probs=59.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--ee-e--cCHHHHH---hccccCCCcc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PV-M--SDLTMVL---GSISQSKARA  108 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v-~--~dl~~~l---~~~~~~~~~D  108 (257)
                      +|.|+|| |.+|...++.+. .-+.+-|-++|+..   +--+++   .++|.  .+ +  .+..+..   .++..+..+|
T Consensus        31 ~VlV~Ga-G~iG~~~~~~ak-~~Ga~~Vi~~~~~~---~~~~~a---~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          31 TVVIQGA-GPLGLFGVVIAR-SLGAENVIVIAGSP---NRLKLA---EEIGADLTLNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTBSEEEEEESCH---HHHHHH---HHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             EEEEECC-Cccchhheeccc-cccccccccccccc---cccccc---ccccceEEEeccccchHHHHHHHHHhhCCCCce
Confidence            6999996 999999998665 56774444455421   001111   01221  11 1  2222221   1111123588


Q ss_pred             EEEEcCChHhHHHH-HHHHHHcCCCeEEeCCCCC-HHHHHHHHHHhhhcCceEEEccCchHH
Q 025154          109 VVIDFTDASTVYDN-VKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPTLSIG  168 (257)
Q Consensus       109 VvIDFT~p~~~~~~-~~~a~~~Gi~vViGTTG~s-~e~~~~L~~~a~~~gipvl~spNfSlG  168 (257)
                      ++||++-...+.+. +..+...|.=+++|..+-. +-.......+.. +++.+.-+-+++.-
T Consensus       103 vvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~-k~l~i~G~~~~~~~  163 (182)
T d1vj0a2         103 FILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVL-KNATFKGIWVSDTS  163 (182)
T ss_dssp             EEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTT-TTCEEEECCCCCHH
T ss_pred             EEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHH-CCcEEEEEEeCCHH
Confidence            99998854444444 4444445555566644211 101112222222 23777766666554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=91.71  E-value=0.14  Score=40.84  Aligned_cols=65  Identities=17%  Similarity=0.166  Sum_probs=43.2

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|+| +|++|+.+++.+. .=++++.+ +|+.....+...      ..+...++++++++.      .+|+|+...
T Consensus        47 g~tvgIiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~~~~~~~~------~~~~~~~~~l~~ll~------~sD~v~l~~  111 (191)
T d1gdha1          47 NKTLGIYG-FGSIGQALAKRAQ-GFDMDIDY-FDTHRASSSDEA------SYQATFHDSLDSLLS------VSQFFSLNA  111 (191)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEEE-ECSSCCCHHHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             ccceEEee-cccchHHHHHHHH-hhcccccc-ccccccccchhh------cccccccCCHHHHHh------hCCeEEecC
Confidence            36899999 5999999999765 56788764 564321111111      123345678999996      689887654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.50  E-value=0.097  Score=40.18  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHh
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTK   57 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~   57 (257)
                      ||||.|+||+|..|+.++-.+.+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~   25 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGN   25 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHH
Confidence            78999999999999999987763

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.38  E-value=1.1  Score=36.38  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=50.2

Q ss_pred             eE-EEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEE
Q 025154           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (257)
Q Consensus        37 kV-~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (257)
                      || .|.|+++.+|+++++.++ ..+..|+. .++..  ..+.++.              +++-+     ...+   +..|
T Consensus         3 KValITGas~GIG~aia~~la-~~Ga~V~i-~~r~~--~~l~~~~--------------~~l~~-----~g~~~~~~~~D   59 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLG-KEGLRVFV-CARGE--EGLRTTL--------------KELRE-----AGVEADGRTCD   59 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence            45 678999999999999887 46788654 45431  1111111              11111     1223   3568


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeCC
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      .|.++...+.+..+.+.  ++.++|-..
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnnA   87 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNNA   87 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence            89999999988888764  578888443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.35  E-value=0.78  Score=37.66  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=52.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|.|+++.+|+++++.+++ .+.+++....+..  ..+.++               .+.+.+    ...+   +..|.
T Consensus         9 ~alITGas~GIG~aia~~la~-~G~~Vv~~~r~~~--~~~~~~---------------~~~~~~----~g~~~~~~~~Dv   66 (261)
T d1geea_           9 VVVITGSSTGLGKSMAIRFAT-EKAKVVVNYRSKE--DEANSV---------------LEEIKK----VGGEAIAVKGDV   66 (261)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTCEEEEEECCT
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcH--HHHHHH---------------HHHHHh----cCCcEEEEEccC
Confidence            577889999999999998874 6888775432210  011111               111211    2333   34588


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.++...+.+..+.+.  ++.++|=..|
T Consensus        67 t~~~~v~~~~~~~~~~~G~iDiLVnnAG   94 (261)
T d1geea_          67 TVESDVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEeeccce
Confidence            9999998888888765  7888886654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.20  E-value=0.82  Score=37.92  Aligned_cols=32  Identities=19%  Similarity=0.206  Sum_probs=26.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||.|+|++|-+|+.+++.+.+ .+.++.+ +++
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~-~g~~V~~-~~r   40 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQT-MGATVKG-YSL   40 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EEC
Confidence            6999999999999999998875 5788664 553

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.13  E-value=0.068  Score=41.10  Aligned_cols=27  Identities=19%  Similarity=0.476  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCChHHHHHHHHHHhcC
Q 025154           33 QSNIKVIINGAVKEIGRAAVIAVTKAR   59 (257)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~   59 (257)
                      ..||||.|+||+|.+|+.++-.+...+
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            358999999999999999998887544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.03  E-value=0.72  Score=37.64  Aligned_cols=79  Identities=24%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      .+.|.|+++.+|+++++.+++ .+.+|+. .+++.  ..+                  +++.+++.  .++. +..|.|.
T Consensus         7 ~alVTGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l------------------~~~~~~~~--~~~~~~~~Dvt~   62 (256)
T d1k2wa_           7 TALITGSARGIGRAFAEAYVR-EGARVAI-ADINL--EAA------------------RATAAEIG--PAACAIALDVTD   62 (256)
T ss_dssp             EEEEETCSSHHHHHHHHHHHH-TTEEEEE-EESCH--HHH------------------HHHHHHHC--TTEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHHhC--CceEEEEeeCCC
Confidence            578999999999999998874 6888664 45421  111                  11221110  1222 4568899


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      ++...+.+..+.+.  ++.++|-..|
T Consensus        63 ~~~v~~~~~~~~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          63 QASIDRCVAELLDRWGSIDILVNNAA   88 (256)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCccEEEeecc
Confidence            99998888888764  7888886554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.25  Score=38.93  Aligned_cols=60  Identities=23%  Similarity=0.110  Sum_probs=40.8

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      -.+|+|+| +|++|+.+++.+. .-++++.+ +|+..  ..        ......-+.++++++.      .+|+++-.
T Consensus        44 ~~~vgiiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~--~~--------~~~~~~~~~~l~ell~------~sDii~i~  103 (188)
T d1sc6a1          44 GKKLGIIG-YGHIGTQLGILAE-SLGMYVYF-YDIEN--KL--------PLGNATQVQHLSDLLN------MSDVVSLH  103 (188)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSC--CC--------CCTTCEECSCHHHHHH------HCSEEEEC
T ss_pred             ceEEEEee-cccchhhhhhhcc-cccceEee-ccccc--cc--------hhhhhhhhhhHHHHHh------hccceeec
Confidence            46899999 6999999999765 56888765 45421  10        0112334568999996      68987743

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.01  E-value=0.96  Score=34.95  Aligned_cols=71  Identities=20%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             CceEEEEcCCChHHHH--HHHHHHhcCC---cEEEEEEecCCC-----Ccchhhhh-cCCCCCCeeeecCHHHHHhcccc
Q 025154           35 NIKVIINGAVKEIGRA--AVIAVTKARG---MEVAGAIDSHSV-----GEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQ  103 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~--i~~~i~~~~~---~eLvg~vd~~~~-----g~d~g~~~-g~~~~~gv~v~~dl~~~l~~~~~  103 (257)
                      .|||+|+|+ |..|..  ++..+...+.   -||+ .+|.+..     ..+..... ....+..+..++|+++++.    
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~----   75 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVII----   75 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT----
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEE-EEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhccc----
Confidence            479999996 999965  3334554444   3665 5674310     01111111 1112345666789999995    


Q ss_pred             CCCccEEEEc
Q 025154          104 SKARAVVIDF  113 (257)
Q Consensus       104 ~~~~DVvIDF  113 (257)
                        ++|+||.-
T Consensus        76 --dad~Vv~~   83 (171)
T d1obba1          76 --DADFVINT   83 (171)
T ss_dssp             --TCSEEEEC
T ss_pred             --CCCeEeee
Confidence              89988754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.99  E-value=0.59  Score=38.11  Aligned_cols=81  Identities=17%  Similarity=0.145  Sum_probs=50.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      .+.|.|+++.+|+++++.+++ .+..++ ++++..  +...++               .+.+..   ..++. +..|.|.
T Consensus         8 ~alVTGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~~~~~---------------~~~~~~---~~~~~~~~~Dv~~   65 (251)
T d1zk4a1           8 VAIITGGTLGIGLAIATKFVE-EGAKVM-ITGRHS--DVGEKA---------------AKSVGT---PDQIQFFQHDSSD   65 (251)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHH---------------HHHHCC---TTTEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH---------------HHHhCC---CCcEEEEEccCCC
Confidence            577889999999999998874 578865 445421  111111               111110   01222 3468899


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      ++...+.+..+.+.  ++.++|-.-|
T Consensus        66 ~~~v~~~~~~~~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          66 EDGWTKLFDATEKAFGPVSTLVNNAG   91 (251)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCceEEEeccc
Confidence            99988888887764  6788875443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=90.97  E-value=0.25  Score=39.47  Aligned_cols=61  Identities=16%  Similarity=0.131  Sum_probs=40.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      ..+|+|+| +|++|+.+++.+. .=++++.+ +|+....  ..       ...+ -+.++++++.      .+|+++-..
T Consensus        45 ~ktvgIiG-~G~IG~~va~~l~-~fg~~v~~-~d~~~~~--~~-------~~~~-~~~~l~~l~~------~~D~v~~~~  105 (199)
T d1dxya1          45 QQTVGVMG-TGHIGQVAIKLFK-GFGAKVIA-YDPYPMK--GD-------HPDF-DYVSLEDLFK------QSDVIDLHV  105 (199)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHH-HTTCEEEE-ECSSCCS--SC-------CTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             ceeeeeee-ccccccccccccc-ccceeeec-cCCccch--hh-------hcch-hHHHHHHHHH------hcccceeee
Confidence            35899999 6999999999876 45788764 6643110  00       1111 2468999986      689877543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.73  E-value=1.4  Score=35.94  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (257)
                      .++.|+|+++.||+++++.+++ .+..|+. +++..  ..+.++.              +++-+     ...+   ...|
T Consensus         7 K~alITGas~GIG~aia~~la~-~G~~V~i-~~r~~--~~l~~~~--------------~~~~~-----~~~~~~~~~~D   63 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAG-LGARVYT-CSRNE--KELDECL--------------EIWRE-----KGLNVEGSVCD   63 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCCceEEEee
Confidence            3689999999999999998874 6787664 44421  1111111              11111     1222   2468


Q ss_pred             cCChHhHHHHHHHHHHc--C-CCeEEeCC
Q 025154          113 FTDASTVYDNVKQATAF--G-MRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--G-i~vViGTT  138 (257)
                      +|.++...+.+..+.+.  | +.+++-..
T Consensus        64 ~s~~~~~~~~~~~~~~~~~g~idilinna   92 (258)
T d1ae1a_          64 LLSRTERDKLMQTVAHVFDGKLNILVNNA   92 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHTTSCCCEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence            99999998888877764  3 66777443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.60  E-value=0.78  Score=34.87  Aligned_cols=94  Identities=11%  Similarity=0.032  Sum_probs=48.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee----cCHHHHHhccccCCCccEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVID  112 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVvID  112 (257)
                      .|+|+|+ |.+|...+..+... +...|-++++...-.+...-.|.   ..+..+    +..++..... ....+|++||
T Consensus        31 tVlV~Ga-GG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~Ga---~~~i~~~~~~~~~~~~~~~~-~~~G~D~vid  104 (176)
T d2jhfa2          31 TCAVFGL-GGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGA---TECVNPQDYKKPIQEVLTEM-SNGGVDFSFE  104 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC---SEEECGGGCSSCHHHHHHHH-TTSCBSEEEE
T ss_pred             EEEEECC-CCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHhCC---eeEEecCCchhHHHHHHHHH-hcCCCCEEEe
Confidence            4999997 88999999877754 54444456543111111111111   011111    1233333211 1136899999


Q ss_pred             cCChHhHHHHHHHHHHcC-CCeEEe
Q 025154          113 FTDASTVYDNVKQATAFG-MRSVVY  136 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~G-i~vViG  136 (257)
                      ++-.....+.....+..+ .-++++
T Consensus       105 ~~G~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2         105 VIGRLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             cCCchhHHHHHHHHHhcCCcceEEe
Confidence            987666666555555543 333433

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.33  Score=43.42  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=25.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||.|+|+ |.+|..+++.+. ..|+.=+-++|.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~-~~Gvg~i~lvD~   69 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLA-LSGFRQIHVIDM   69 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHH-TTTCCCEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEEC
Confidence            49999996 999999999987 456655667773

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=90.52  E-value=0.18  Score=40.70  Aligned_cols=109  Identities=17%  Similarity=0.262  Sum_probs=66.1

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      .||+|.| .|++|+.+++.+.+ .+.+|+ +.|...  ..+....    ..+... -+.++++.     .++||++=+..
T Consensus        28 k~v~IqG-~G~VG~~~A~~L~~-~Gakvv-v~d~d~--~~~~~~~----~~g~~~-~~~~~~~~-----~~~DI~iPcA~   92 (201)
T d1c1da1          28 LTVLVQG-LGAVGGSLASLAAE-AGAQLL-VADTDT--ERVAHAV----ALGHTA-VALEDVLS-----TPCDVFAPCAM   92 (201)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCEE-CCGGGGGG-----CCCSEEEECSC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHH-CCCEEE-EecchH--HHHHHHH----hhcccc-cCcccccc-----ccceeeecccc
Confidence            5899999 59999999998775 688887 455421  1111111    123332 24567776     48999987665


Q ss_pred             hHhH-HHHHHHHHHcCCCeEEeCCC--CCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          116 ASTV-YDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       116 p~~~-~~~~~~a~~~Gi~vViGTTG--~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      .... .+++.   +.+..+|+|-..  ++.+..   .+.-++.  .|+|.|-|-.
T Consensus        93 ~~~I~~~~a~---~i~ak~i~e~AN~p~~~~~~---~~~L~~r--gI~~iPD~la  139 (201)
T d1c1da1          93 GGVITTEVAR---TLDCSVVAGAANNVIADEAA---SDILHAR--GILYAPDFVA  139 (201)
T ss_dssp             SCCBCHHHHH---HCCCSEECCSCTTCBCSHHH---HHHHHHT--TCEECCHHHH
T ss_pred             cccccHHHHh---hhhhheeeccCCCCcchhhH---HHHhccc--ceEEEehhhh
Confidence            4433 23333   557899998762  454432   2333443  4677887764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.49  E-value=0.13  Score=40.38  Aligned_cols=97  Identities=7%  Similarity=0.036  Sum_probs=53.5

Q ss_pred             EEEE-cCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeec-----CHHHHHhccc--cCCC
Q 025154           38 VIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMS-----DLTMVLGSIS--QSKA  106 (257)
Q Consensus        38 V~V~-Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv---~v~~-----dl~~~l~~~~--~~~~  106 (257)
                      |.|+ |++|.+|+..++.+. .-++++++++.....-.+..+.+   .++|.   ..++     ++.+.+.++.  .+..
T Consensus        32 vli~~ga~g~vG~~aiqlAk-~~Ga~vI~~v~~~~~~~~~~~~~---~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          32 WFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASL---KELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             EEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHH---HHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             EEEEeCCCchHHHHHHHHHh-hcCCeEEEEEecccccchHHhhh---hhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            6675 778999999998665 56899999886432111111111   01221   1111     1111111000  1135


Q ss_pred             ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      +|+++|+...+.....+......|.=+++|.+
T Consensus       108 vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~  139 (189)
T d1gu7a2         108 AKLALNCVGGKSSTGIARKLNNNGLMLTYGGM  139 (189)
T ss_dssp             EEEEEESSCHHHHHHHHHTSCTTCEEEECCCC
T ss_pred             ceEEEECCCcchhhhhhhhhcCCcEEEEECCc
Confidence            89999988777766666666666666666743

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=1  Score=36.74  Aligned_cols=82  Identities=15%  Similarity=0.250  Sum_probs=52.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE---EEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vIDF  113 (257)
                      .+.|.|+++.+|+++++.+++ .+..++.. ++..  ..+.++.              +++.+.   ..+..+   ..|.
T Consensus        12 v~lITGas~GIG~aiA~~la~-~G~~Vv~~-~r~~--~~l~~~~--------------~~l~~~---~~~~~~~~~~~Dl   70 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQ-QGLKVVGC-ARTV--GNIEELA--------------AECKSA---GYPGTLIPYRCDL   70 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEEE-ESCH--HHHHHHH--------------HHHHHT---TCSSEEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-ECCH--HHHHHHH--------------HHHHhc---CCCceEEEEEccC
Confidence            388999999999999999885 68887654 4321  1111111              111110   011233   3588


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.++.....+..+.+.  ++.++|=..|
T Consensus        71 s~~~~v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          71 SNEEDILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            9999999988888775  6888876654

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.24  Score=39.66  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=27.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      |||+++| ++..|..+.+.+.+ .++++++++.
T Consensus         1 MkI~~~G-~~~~~~~~l~~L~~-~~~~i~~V~t   31 (203)
T d2bw0a2           1 MKIAVIG-QSLFGQEVYCHLRK-EGHEVVGVFT   31 (203)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred             CEEEEEc-CCHHHHHHHHHHHH-CCCcEEEEEc
Confidence            7999999 69999999998874 5899999986

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.82  Score=41.78  Aligned_cols=103  Identities=14%  Similarity=0.079  Sum_probs=59.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-----------C-Ccchhh---------hhcCCCCCCee-eecC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----------V-GEDIGM---------VCDMEQPLEIP-VMSD   93 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----------~-g~d~g~---------~~g~~~~~gv~-v~~d   93 (257)
                      .||.|+|+ |..|..+++.+. .+|+.=+-++|...           . ..|+|.         +..+.....+. +..+
T Consensus        26 s~VlvvG~-gglG~Ei~knLv-l~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~  103 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES  103 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHH-TTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred             CCEEEECC-CHHHHHHHHHHH-HhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence            48999996 999999999987 56776666777321           0 112211         21211011122 3345


Q ss_pred             HHHHHhccc-cCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC-CC
Q 025154           94 LTMVLGSIS-QSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP-HI  140 (257)
Q Consensus        94 l~~~l~~~~-~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT-G~  140 (257)
                      +++.++... --..+||||+... ++.....-..|.++++|+|.+-+ |+
T Consensus       104 ~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~  153 (529)
T d1yova1         104 PENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGL  153 (529)
T ss_dssp             HHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             chhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence            555432100 0025799998774 44556677888899999986533 53

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.94  E-value=0.61  Score=38.27  Aligned_cols=79  Identities=20%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      .+.|.|+++.+|+++++.+++ .+.+|+ +++++.  ..+.                  ++.+++.+..... +..|.|.
T Consensus         8 valITGas~GIG~aia~~la~-~Ga~V~-i~~r~~--~~~~------------------~~~~~l~~~~~~~~~~~Dv~~   65 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVR-YGAKVV-IADIAD--DHGQ------------------KVCNNIGSPDVISFVHCDVTK   65 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHH------------------HHHHHHCCTTTEEEEECCTTC
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCEEE-EEECCH--HHHH------------------HHHHHhcCCCceEEEEccCCC
Confidence            477889999999999998874 588865 455431  1111                  1111110001111 3458899


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYV  137 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGT  137 (257)
                      ++.....+..+.+.  ++.++|-.
T Consensus        66 ~~~v~~~~~~~~~~~g~iD~lVnn   89 (268)
T d2bgka1          66 DEDVRNLVDTTIAKHGKLDIMFGN   89 (268)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCcceeccc
Confidence            99988888877664  68888743

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.84  E-value=1.1  Score=33.92  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=22.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      +|+|+|+ |.+|-..+..+.. .+...+-++|+.
T Consensus        31 ~VlI~G~-Gg~g~~~~~~~~~-~g~~~Vi~~~~~   62 (175)
T d1cdoa2          31 TCAVFGL-GAVGLAAVMGCHS-AGAKRIIAVDLN   62 (175)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCSEEEEECSC
T ss_pred             EEEEEec-CCccchHHHHHHH-Hhhchheeecch
Confidence            5999996 8899988877665 455445556653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.71  E-value=0.43  Score=40.77  Aligned_cols=114  Identities=11%  Similarity=0.092  Sum_probs=68.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCC-------CCCeeeecCHHHHHhccc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ-------PLEIPVMSDLTMVLGSIS  102 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~-------~~gv~v~~dl~~~l~~~~  102 (257)
                      ..+|+|-| .|++|+..++.+. +.+.+++++.|+.     ..|-|+.++.....       ..+..+  +.+++++   
T Consensus        36 gktvaIqG-fGnVG~~~A~~L~-e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~--~~~~~~~---  108 (293)
T d1hwxa1          36 DKTFAVQG-FGNVGLHSMRYLH-RFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKI--YEGSILE---  108 (293)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCB--CCSCGGG---
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeeccccccc--CCccccc---
Confidence            46899999 5999999999887 5699999999842     34556554431100       011122  2235665   


Q ss_pred             cCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       103 ~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                        .++||+|=+...... .+++.   +.+..+|++--  -.+++..+.|    +++  .|++.|-|-
T Consensus       109 --~~~DIliPaA~~~~I~~~~a~---~l~ak~I~EgAN~P~t~eA~~~L----~~~--gI~viPD~l  164 (293)
T d1hwxa1         109 --VDCDILIPAASEKQLTKSNAP---RVKAKIIAEGANGPTTPQADKIF----LER--NIMVIPDLY  164 (293)
T ss_dssp             --CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHH----HHT--TCEEECHHH
T ss_pred             --CCccEEeeccccccccHHHHH---HHhhCEEeccCCCCCCcchHHHH----HHC--CCEEeChhh
Confidence              489999977643333 22332   45788998865  2455443333    333  456666554

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.73  Score=38.27  Aligned_cols=85  Identities=15%  Similarity=0.132  Sum_probs=47.9

Q ss_pred             eEE-EEcCCChHHHHHHHHHHhcCCcEEE--EEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccc-cCCCcc-EEE
Q 025154           37 KVI-INGAVKEIGRAAVIAVTKARGMEVA--GAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKARA-VVI  111 (257)
Q Consensus        37 kV~-V~Ga~GrMG~~i~~~i~~~~~~eLv--g~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~-~~~~~D-VvI  111 (257)
                      ||+ |.||++.+|+++++.+++ .+..++  ....+..  +....               +++...++. ....+. +..
T Consensus         3 kVvlITGassGIG~a~A~~la~-~Ga~v~~v~~~~~~~--~~~~~---------------l~~~~~~~~~~~~~~~~~~~   64 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLAS-DPSQSFKVYATLRDL--KTQGR---------------LWEAARALACPPGSLETLQL   64 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHT-CTTCCEEEEEEESCG--GGTHH---------------HHHHHHHTTCCTTSEEEEEC
T ss_pred             CEEEEccCCCHHHHHHHHHHHH-CCCCeEEEEEecCCh--hhhHH---------------HHHHHHHHhccCCceEEEec
Confidence            565 459999999999998875 455533  3333221  11111               111111100 001122 346


Q ss_pred             EcCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG  139 (257)
                      |.|.++.....+..+.+.++.+++-..|
T Consensus        65 Dv~~~~~~~~~~~~~~~g~idilvnnag   92 (285)
T d1jtva_          65 DVRDSKSVAAARERVTEGRVDVLVCNAG   92 (285)
T ss_dssp             CTTCHHHHHHHHHTCTTSCCSEEEECCC
T ss_pred             cccchHhhhhhhhhccccchhhhhhccc
Confidence            7888888888777777777877766543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.26  E-value=1.4  Score=36.90  Aligned_cols=88  Identities=25%  Similarity=0.238  Sum_probs=51.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      .+.|.|+++.+|+++++.++ ..++.++ +.|...   +.....        .-...++++.+++ ......+..|.+.+
T Consensus         9 valITGas~GIG~aiA~~la-~~Ga~Vv-i~d~~~---~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~d~~~~   74 (302)
T d1gz6a_           9 VVLVTGAGGGLGRAYALAFA-ERGALVV-VNDLGG---DFKGVG--------KGSSAADKVVEEI-RRRGGKAVANYDSV   74 (302)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEE-EECCCB---CTTSCB--------CCSHHHHHHHHHH-HHTTCEEEEECCCG
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEE-EEeCCc---hhhhhh--------hhHHHHHHHHHHH-hhcccccccccchH
Confidence            47788999999999999887 5678765 344321   000000        0001112222110 00245678889988


Q ss_pred             HhHHHHHHHHHHc--CCCeEEeCC
Q 025154          117 STVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       117 ~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      +...+.+..+.+.  ++.++|=--
T Consensus        75 ~~~~~~v~~~~~~~G~iDiLVnNA   98 (302)
T d1gz6a_          75 EAGEKLVKTALDTFGRIDVVVNNA   98 (302)
T ss_dssp             GGHHHHHHHHHHHTSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECC
Confidence            8888888777764  588887543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=88.97  E-value=2  Score=34.96  Aligned_cols=80  Identities=15%  Similarity=0.175  Sum_probs=50.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|.|+++.+|+++++.+++ .+..|+. .++..  +.+.++.              +++-+     ....   +..|.
T Consensus        10 ~alITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~Dv   66 (259)
T d2ae2a_          10 TALVTGGSRGIGYGIVEELAS-LGASVYT-CSRNQ--KELNDCL--------------TQWRS-----KGFKVEASVCDL   66 (259)
T ss_dssp             EEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCEEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCCceEEEeeC
Confidence            578999999999999998875 5788654 45421  1111111              11111     1222   34688


Q ss_pred             CChHhHHHHHHHHHHc---CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF---GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~---Gi~vViGTTG  139 (257)
                      |.++...+.+..+.+.   .+.+++-..|
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          67 SSRSERQELMNTVANHFHGKLNILVNNAG   95 (259)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCceEEEECCc
Confidence            9999988888777552   3788886554

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.85  E-value=0.58  Score=35.70  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=25.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||+|+|+ |+.|+.++-.+....=.||+ .+|.
T Consensus         4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~-L~Di   35 (150)
T d1t2da1           4 AKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDI   35 (150)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCeEE-EEec
Confidence            59999996 99999999877765545655 7884

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.80  E-value=0.32  Score=37.05  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=24.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (257)
                      -||+|+|+ |.+|..++-.+....-. ||+ .+|.
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di   34 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDA   34 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEec
Confidence            38999996 99999999877765433 555 6774

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.76  E-value=0.2  Score=42.98  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=26.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      |||.|+|++|-+|+.+++.+.+ .+.+++++
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~-~g~~V~~i   31 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSK-KNYEVCIV   31 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEEE
Confidence            6999999999999999998885 67888764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.44  E-value=2  Score=34.66  Aligned_cols=79  Identities=28%  Similarity=0.410  Sum_probs=49.8

Q ss_pred             eE-EEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEE
Q 025154           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (257)
Q Consensus        37 kV-~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (257)
                      || .|.|+++.+|+++++.+++ .+..++ +.+++.  ..+.++.              +++-+     ...+   +..|
T Consensus         2 KValITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~~--------------~~i~~-----~g~~~~~~~~D   58 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVK-DGFAVA-IADYND--ATAKAVA--------------SEINQ-----AGGHAVAVKVD   58 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECC
T ss_pred             CEEEEcCCccHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence            66 6779999999999999875 588865 455431  1111111              11111     1222   3468


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeCC
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      .|.++...+.+..+.+.  ++.++|=..
T Consensus        59 v~~~~~v~~~~~~~~~~~g~iDilVnnA   86 (255)
T d1gega_          59 VSDRDQVFAAVEQARKTLGGFDVIVNNA   86 (255)
T ss_dssp             TTSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCccEEEecc
Confidence            89999998888888763  577887443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.27  E-value=0.14  Score=39.39  Aligned_cols=95  Identities=16%  Similarity=0.126  Sum_probs=47.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEEEEcC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .|.|+|+ |.+|...++.+... +...+.++|+...-.+...-.|.   ..+..+  +++++.++. .....+|++||++
T Consensus        35 ~vli~Ga-G~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~~~~~~ga---~~~i~~~~~~~~~~~~~-~~~~g~d~vid~~  108 (172)
T d1h2ba2          35 YVAIVGV-GGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAERLGA---DHVVDARRDPVKQVMEL-TRGRGVNVAMDFV  108 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHHTTC---SEEEETTSCHHHHHHHH-TTTCCEEEEEESS
T ss_pred             EEEEeCC-ChHHHHHHHHHHhh-cCcccccccchhHHHHHHhhccc---ceeecCcccHHHHHHHh-hCCCCceEEEEec
Confidence            5999996 99999999877654 44445556643100111110110   011111  223333321 1223588888888


Q ss_pred             ChHhHHHHHHHH-HHcCCCeEEeC
Q 025154          115 DASTVYDNVKQA-TAFGMRSVVYV  137 (257)
Q Consensus       115 ~p~~~~~~~~~a-~~~Gi~vViGT  137 (257)
                      --....+....+ ...|.-+++|-
T Consensus       109 g~~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         109 GSQATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             CCHHHHHHGGGGEEEEEEEEECCC
T ss_pred             CcchHHHHHHHHHhCCCEEEEEeC
Confidence            655444444443 34444445553

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=88.14  E-value=2.4  Score=34.21  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=48.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      .+.|.|+++.+|+++++.++ ..+..|+ +.++..   +..++.               +.+.      ..=+-.|.|.+
T Consensus         7 ~alITGas~GIG~aia~~la-~~G~~V~-~~~~~~---~~~~~~---------------~~~~------~~~~~~Dv~~~   60 (248)
T d2d1ya1           7 GVLVTGGARGIGRAIAQAFA-REGALVA-LCDLRP---EGKEVA---------------EAIG------GAFFQVDLEDE   60 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEE-EEESST---THHHHH---------------HHHT------CEEEECCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEE-EEECCH---HHHHHH---------------HHcC------CeEEEEeCCCH
Confidence            57899999999999999887 4678765 455431   111111               1111      11145678888


Q ss_pred             HhHHHHHHHHHHc--CCCeEEeC
Q 025154          117 STVYDNVKQATAF--GMRSVVYV  137 (257)
Q Consensus       117 ~~~~~~~~~a~~~--Gi~vViGT  137 (257)
                      +...+.+..+.+.  ++.++|-.
T Consensus        61 ~~v~~~~~~~~~~~G~iDiLVnn   83 (248)
T d2d1ya1          61 RERVRFVEEAAYALGRVDVLVNN   83 (248)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEe
Confidence            8888888777664  67887743

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.10  E-value=2.8  Score=33.73  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=50.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|.|+++.+|+++++.++ ..+..++. .+... .+..                  ++.+++    ...+   +..|.
T Consensus         7 valVTGas~GIG~aia~~la-~~Ga~V~~-~~~~~-~~~~------------------~~~~~~----~g~~~~~~~~Dv   61 (247)
T d2ew8a1           7 LAVITGGANGIGRAIAERFA-VEGADIAI-ADLVP-APEA------------------EAAIRN----LGRRVLTVKCDV   61 (247)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEE-EESSC-CHHH------------------HHHHHH----TTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCc-hHHH------------------HHHHHH----cCCcEEEEEeeC
Confidence            46788999999999999887 56787664 45421 1111                  111211    1122   45688


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.++.....+..+.+.  ++.++|=.-|
T Consensus        62 s~~~~v~~~~~~~~~~~G~iDilVnnAG   89 (247)
T d2ew8a1          62 SQPGDVEAFGKQVISTFGRCDILVNNAG   89 (247)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            9999998888888764  6888876544

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=1.6  Score=34.64  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=24.0

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |.|+|++|-+|+.+++.+.+. +...|.++|.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~-g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhC-CCCeEEEEEC
Confidence            789999999999999998866 5433344663

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.81  E-value=1.3  Score=36.22  Aligned_cols=82  Identities=16%  Similarity=0.185  Sum_probs=52.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE---EEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vID  112 (257)
                      -++.|.|+++.+|+++++.+++ .+.+|+. .+++. .+.+.++               .+.+.+    ...++   ..|
T Consensus        19 K~~lITGas~GIG~aia~~la~-~Ga~Vvi-~~~~~-~~~~~~~---------------~~~~~~----~g~~~~~~~~D   76 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGR-RGCKVIV-NYANS-TESAEEV---------------VAAIKK----NGSDAACVKAN   76 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESSC-HHHHHHH---------------HHHHHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EeCCc-hHHHHHH---------------HHHHHh----hCCceeeEeCC
Confidence            3688999999999999998874 5888764 33321 0111111               111211    23333   357


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .+.++.+.+.+..+.+.  ++.+++-..|
T Consensus        77 ~~~~~~v~~~~~~~~~~~g~idilV~nag  105 (272)
T d1g0oa_          77 VGVVEDIVRMFEEAVKIFGKLDIVCSNSG  105 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCccccccc
Confidence            88999999888887664  6888887765

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=1.4  Score=35.59  Aligned_cols=80  Identities=20%  Similarity=0.356  Sum_probs=50.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      .+.|.|+++.+|+++++.+.+ .+..++. .++..  +.+.++.               +.+..    ...-+..|.|.+
T Consensus         6 ~alITGas~GIG~a~a~~l~~-~G~~Vv~-~~r~~--~~l~~~~---------------~~~~~----~~~~~~~Dv~~~   62 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLAA-RGAKVIG-TATSE--NGAQAIS---------------DYLGA----NGKGLMLNVTDP   62 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHHH---------------HHHGG----GEEEEECCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EeCCH--HHHHHHH---------------HHhCC----CCcEEEEEecCH
Confidence            466779999999999998874 5888763 45421  1111111               11110    112256788889


Q ss_pred             HhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          117 STVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       117 ~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      +...+.+..+.+.  ++.++|-.-|
T Consensus        63 ~~v~~~~~~~~~~~g~iDilVnnAg   87 (243)
T d1q7ba_          63 ASIESVLEKIRAEFGEVDILVNNAG   87 (243)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             HHhhhhhhhhhcccCCcceehhhhh
Confidence            8888888887764  5777776543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=1  Score=36.41  Aligned_cols=32  Identities=34%  Similarity=0.554  Sum_probs=25.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .++.|.|+++.+|+++++.+.+ .+.+++. +++
T Consensus         8 K~~lITGas~GIG~aia~~la~-~G~~V~~-~~r   39 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHA-TGARVVA-VSR   39 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EEC
Confidence            3688999999999999998874 6788664 454

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.25  E-value=1.1  Score=36.08  Aligned_cols=81  Identities=14%  Similarity=0.142  Sum_probs=48.2

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF  113 (257)
                      -.|.|.|+++.+|+++++.++++.. ..|+.. .++.  ..+.++.               +...     .++. +..|.
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~-~R~~--~~~~~l~---------------~~~~-----~~~~~~~~Dv   60 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIAT-ARDV--EKATELK---------------SIKD-----SRVHVLPLTV   60 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEE-ESSG--GGCHHHH---------------TCCC-----TTEEEEECCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEE-eCCH--HHHHHHH---------------HhhC-----CceEEEEEec
Confidence            4688999999999999999886532 355543 3321  1111111               0000     1222 35578


Q ss_pred             CChHhHHHHHHHHHH----cCCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATA----FGMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~----~Gi~vViGTTG  139 (257)
                      |.++...+.+..+.+    .++.+++-.-|
T Consensus        61 s~~~~v~~~~~~i~~~~~~~~idilinnAG   90 (250)
T d1yo6a1          61 TCDKSLDTFVSKVGEIVGSDGLSLLINNAG   90 (250)
T ss_dssp             TCHHHHHHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeEEEEEcCc
Confidence            888888777776654    24888885443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.19  E-value=0.34  Score=39.90  Aligned_cols=31  Identities=16%  Similarity=0.331  Sum_probs=26.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ||.|.|++|-+|+.+++.+.+ .++++.++..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~-~g~~V~~~~r   32 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLE-KGYRVHGLVA   32 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CcCEEEEEEC
Confidence            799999999999999998875 4899987653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.86  E-value=2.1  Score=34.68  Aligned_cols=79  Identities=22%  Similarity=0.266  Sum_probs=49.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      .+.|.|+++.+|+++++.++ ..+.+++. .++..  ....                  ++.+++.  ..+. +..|.|.
T Consensus         8 ~alITGas~GIG~aia~~la-~~G~~V~~-~~r~~--~~~~------------------~~~~~~~--~~~~~~~~Dv~~   63 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMV-AEGAKVVF-GDILD--EEGK------------------AMAAELA--DAARYVHLDVTQ   63 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHH------------------HHHHHTG--GGEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECCH--HHHH------------------HHHHHhh--CcceEEEeecCC
Confidence            46788999999999999887 46888654 55421  1111                  1111100  0111 4467888


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      ++...+.++.+.+.  ++.+++-..|
T Consensus        64 ~~~v~~~~~~~~~~~g~idilinnAG   89 (244)
T d1nffa_          64 PAQWKAAVDTAVTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEECCc
Confidence            88888888777663  5777775543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=86.86  E-value=0.21  Score=39.30  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=24.8

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      -||+|+|+ |-||+.++..++ ..|++++ ++|.
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a-~~G~~V~-l~D~   35 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSA-SKGTPIL-MKDI   35 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHH-HTTCCEE-EECS
T ss_pred             CEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEEC
Confidence            37999996 999999997666 5688876 6774

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=86.76  E-value=1.1  Score=36.18  Aligned_cols=76  Identities=21%  Similarity=0.299  Sum_probs=50.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|.|+++.+|+.+++.+. ..+++++. .++.  .++.                  +++.++    .+.+   +..|+
T Consensus         7 ~alItGas~GIG~aia~~l~-~~G~~V~~-~~r~--~~~~------------------~~~~~~----~~~~~~~~~~Dl   60 (241)
T d2a4ka1           7 TILVTGAASGIGRAALDLFA-REGASLVA-VDRE--ERLL------------------AEAVAA----LEAEAIAVVADV   60 (241)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-HTTCEEEE-EESC--HHHH------------------HHHHHT----CCSSEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EECC--HHHH------------------HHHHHH----cCCceEEEEecC
Confidence            57788999999999999887 46888874 3432  1111                  122221    1222   45688


Q ss_pred             CChHhHHHHHHHHHH--cCCCeEEeCC
Q 025154          114 TDASTVYDNVKQATA--FGMRSVVYVP  138 (257)
Q Consensus       114 T~p~~~~~~~~~a~~--~Gi~vViGTT  138 (257)
                      |.++...+.+..+.+  -++.+++--.
T Consensus        61 s~~~~i~~~~~~i~~~~g~iDiLinnA   87 (241)
T d2a4ka1          61 SDPKAVEAVFAEALEEFGRLHGVAHFA   87 (241)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred             CCHHHHHHHHHHHHHHhCCccEecccc
Confidence            888888888877766  4588777643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=86.76  E-value=1.9  Score=35.06  Aligned_cols=78  Identities=19%  Similarity=0.254  Sum_probs=49.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|.|+++.+|+++++.+++ .+..|+ ++++..  +.+.++               .+.+.+    ...+   +..|.
T Consensus         7 ~alITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~---------------~~~~~~----~g~~~~~~~~Dv   63 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAE-EGTAIA-LLDMNR--EALEKA---------------EASVRE----KGVEARSYVCDV   63 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHH---------------HHHHHT----TTSCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH---------------HHHHHh----cCCcEEEEEccC
Confidence            578889999999999998874 678765 455431  111111               111111    1222   45688


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYV  137 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGT  137 (257)
                      |.++...+.+..+.+.  ++.++|-.
T Consensus        64 ~~~~~v~~~~~~~~~~~g~iDilVnn   89 (260)
T d1zema1          64 TSEEAVIGTVDSVVRDFGKIDFLFNN   89 (260)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeehhh
Confidence            9999888888887664  67777743

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=86.67  E-value=0.19  Score=41.58  Aligned_cols=110  Identities=10%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT  114 (257)
                      -.+|+|.| .|++|+.+++.+. +.+.+++.. |.+.  ..+..+..   ..+.. .-+.++++.     .++||++=+.
T Consensus        39 g~~v~IqG-~GnVG~~~a~~L~-~~Gakvv~~-d~~~--~~~~~~~~---~~g~~-~~~~~~~~~-----~~cDIl~PcA  104 (230)
T d1leha1          39 GLAVSVQG-LGNVAKALCKKLN-TEGAKLVVT-DVNK--AAVSAAVA---EEGAD-AVAPNAIYG-----VTCDIFAPCA  104 (230)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-HTTCEEEEE-CSCH--HHHHHHHH---HHCCE-ECCGGGTTT-----CCCSEEEECS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEee-cccH--HHHHHHHH---hcCCc-ccCCccccc-----ccccEecccc
Confidence            36899999 5999999999876 468988854 3211  11111111   12222 235567776     5899999776


Q ss_pred             ChHhHH-HHHHHHHHcCCCeEEeCC--CCC-HHHHHHHHHHhhhcCceEEEccCchH
Q 025154          115 DASTVY-DNVKQATAFGMRSVVYVP--HIQ-LETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       115 ~p~~~~-~~~~~a~~~Gi~vViGTT--G~s-~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      ...... +++   -+.+..+|+|-.  +++ +|..+.|   .++   .|+|.|-|-.
T Consensus       105 ~~~~I~~~~~---~~l~ak~Ive~ANn~~t~~ea~~~L---~~r---GI~~iPD~la  152 (230)
T d1leha1         105 LGAVLNDFTI---PQLKAKVIAGSADNQLKDPRHGKYL---HEL---GIVYAPDYVI  152 (230)
T ss_dssp             CSCCBSTTHH---HHCCCSEECCSCSCCBSSHHHHHHH---HHH---TCEECCHHHH
T ss_pred             cccccChHHh---hccCccEEEecccCCCCCchHHHHH---Hhh---CcEEEeehhh
Confidence            544332 233   255788999876  455 3332223   233   5677776643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=4.2  Score=33.64  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|+|+++.+|+++++.+++ .+..|+. .++..  ....+..              +++.+.+.......   +..|.
T Consensus        14 valITGas~GIG~aia~~la~-~Ga~Vvi-~~r~~--~~l~~~~--------------~el~~~~~~~~~~~~~~~~~Dv   75 (297)
T d1yxma1          14 VAIVTGGATGIGKAIVKELLE-LGSNVVI-ASRKL--ERLKSAA--------------DELQANLPPTKQARVIPIQCNI   75 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHTSCTTCCCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhhhccccCceEEEEeccC
Confidence            588999999999999998875 5888664 45421  1111110              11111000001222   34578


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.++...+.+..+.+.  ++.++|=..|
T Consensus        76 s~~~~v~~~~~~~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          76 RNEEEVNNLVKSTLDTFGKINFLVNNGG  103 (297)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCeEEEEeecc
Confidence            8999998888887764  6788875443

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.59  E-value=2.6  Score=34.24  Aligned_cols=79  Identities=20%  Similarity=0.179  Sum_probs=49.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      .+.|.|+++.+|+++++.+++ .+.+++ +.++..  +...                  ++.+++.  .++. +..|.|.
T Consensus         7 ~alVTGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~~~------------------~~~~~~~--~~~~~~~~Dv~~   62 (254)
T d1hdca_           7 TVIITGGARGLGAEAARQAVA-AGARVV-LADVLD--EEGA------------------ATARELG--DAARYQHLDVTI   62 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHH------------------HHHHTTG--GGEEEEECCTTC
T ss_pred             EEEEeCcCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHH------------------HHHHHhC--CceEEEEcccCC
Confidence            588999999999999999874 588865 455421  1111                  1111100  0111 3567788


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      ++...+.+..+.+.  ++.++|=.-|
T Consensus        63 ~~~v~~~~~~~~~~~g~iDilVnnAg   88 (254)
T d1hdca_          63 EEDWQRVVAYAREEFGSVDGLVNNAG   88 (254)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCccEEEecCc
Confidence            88888888777653  5777775433

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=2.4  Score=34.30  Aligned_cols=80  Identities=19%  Similarity=0.154  Sum_probs=51.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|.|+++.+|+++++.++ ..+..|+. .++..  +.+.++.              +++-+     ...+   +..|.
T Consensus        13 ~alITGas~GIG~aia~~la-~~Ga~V~~-~~r~~--~~~~~~~--------------~~l~~-----~g~~~~~~~~Dv   69 (255)
T d1fmca_          13 CAIITGAGAGIGKEIAITFA-TAGASVVV-SDINA--DAANHVV--------------DEIQQ-----LGGQAFACRCDI   69 (255)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-TTTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECCT
T ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCEEEE-EECCH--HHHHHHH--------------HHHHH-----cCCcEEEEEccC
Confidence            67899999999999999887 56888664 44421  1111111              11111     1222   45678


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      |.++...+.+..+.+.  ++.+++-..|
T Consensus        70 s~~~~~~~~~~~~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          70 TSEQELSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             TCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEeeeCCc
Confidence            8888888888887764  6888877654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.33  E-value=0.51  Score=39.64  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=28.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      --||.|+|++|-+|+.+++.+.++ ++++.+.+.
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~-G~~V~~~vR   43 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEH-GYKVRGTAR   43 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEeC
Confidence            358999999999999999988754 899998774

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.32  E-value=1.8  Score=34.84  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=48.0

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEcC
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDFT  114 (257)
                      |.|.|+++.+|+++++.+++ .+..++-...+..  +...++               .+.++.    ...+   +..|.|
T Consensus         4 ~lITGas~GIG~a~a~~la~-~Ga~V~i~~~~~~--~~~~~~---------------~~~~~~----~g~~~~~~~~Dv~   61 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGK-AGCKVLVNYARSA--KAAEEV---------------SKQIEA----YGGQAITFGGDVS   61 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----HTCEEEEEECCTT
T ss_pred             EEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH---------------HHHHHH----cCCcEEEEeCCCC
Confidence            57889999999999998874 6888764332220  111111               111111    1122   345788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      .++...+.+..+.+.  ++.++|=..
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDiLVnnA   87 (244)
T d1edoa_          62 KEADVEAMMKTAIDAWGTIDVVVNNA   87 (244)
T ss_dssp             SHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCCCcccccc
Confidence            888888888777664  577777443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.08  E-value=2.6  Score=34.21  Aligned_cols=81  Identities=15%  Similarity=0.138  Sum_probs=51.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (257)
                      ..+.|.|+++.+|+++++.+++ .+..|+. +++..  ..+.++.              +++-.     ...+   +..|
T Consensus         9 K~alVTGas~GIG~aiA~~la~-~Ga~V~~-~~r~~--~~l~~~~--------------~~~~~-----~~~~~~~~~~D   65 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAG-FGAVIHT-CARNE--YELNECL--------------SKWQK-----KGFQVTGSVCD   65 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCceEEEecc
Confidence            3688999999999999998875 5787664 44421  1111111              11111     1222   3568


Q ss_pred             cCChHhHHHHHHHHHHc--C-CCeEEeCCC
Q 025154          113 FTDASTVYDNVKQATAF--G-MRSVVYVPH  139 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--G-i~vViGTTG  139 (257)
                      .|.++.....+..+.+.  | +.+++-..|
T Consensus        66 v~~~~~v~~~~~~~~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          66 ASLRPEREKLMQTVSSMFGGKLDILINNLG   95 (259)
T ss_dssp             TTSHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCccccccccc
Confidence            88999988888877653  4 788876544

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.85  E-value=3.7  Score=31.30  Aligned_cols=104  Identities=9%  Similarity=0.104  Sum_probs=63.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc--
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF--  113 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF--  113 (257)
                      =+|+|+.=+|.++..+...+. ..++-+.-.+..   |.++          ++    +..++++.+.++++..+++-+  
T Consensus        21 G~valiSqSG~l~~~~~~~~~-~~g~G~s~~vs~---Gn~~----------~~----~~~d~l~~l~~D~~t~~i~l~~E   82 (161)
T d2csua2          21 GNVAFISQSGALGAGIVYKTI-KEDIGFSKFISV---GNMA----------DV----DFAELMEYLADTEEDKAIALYIE   82 (161)
T ss_dssp             CSEEEEESCHHHHHHHHHHHH-HTTCEESEEEEC---TTCC----------SS----CHHHHHHHHTTCSSCCEEEEEES
T ss_pred             CCEEEEECCHHHHHHHHHHHH-hCCCCeeEEEec---CCcc----------cc----CHHHHHHHHhcCCCCcEEEEEec
Confidence            369999999999999998665 457766555542   2111          11    233343333334566776665  


Q ss_pred             --CChHhHHHHHHHHHHcCCCeEEeCCCCCHH--------------HHHHHHHHhhhcCce
Q 025154          114 --TDASTVYDNVKQATAFGMRSVVYVPHIQLE--------------TVSALSAFCDKASMG  158 (257)
Q Consensus       114 --T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e--------------~~~~L~~~a~~~gip  158 (257)
                        ..|+...+.++.+. .++|+|+-.+|-+++              ..+..+++.++.|+-
T Consensus        83 ~~~~~~~f~~~~r~~~-~~Kpvv~~k~G~s~~g~~aa~sHtga~ag~~~~~~a~~~~aGvi  142 (161)
T d2csua2          83 GVRNGKKFMEVAKRVT-KKKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVL  142 (161)
T ss_dssp             CCSCHHHHHHHHHHHH-HHSCEEEEECC------------------CHHHHHHHHHHTTCE
T ss_pred             CCcCHHHHHHHHHHHh-ccCCeeEEEeecccccccccccccccccccHHHHHHHHHHCCce
Confidence              47888888888875 568999887664432              123466777774443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=85.79  E-value=3.1  Score=33.70  Aligned_cols=80  Identities=23%  Similarity=0.317  Sum_probs=49.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDF  113 (257)
                      .+.|.|+++.+|+++++.+++ .+..|+ +.+++.  +...+..              +++.+.   .....   +..|.
T Consensus         6 ~alITGas~GIG~aia~~la~-~Ga~V~-i~~r~~--~~l~~~~--------------~~~~~~---~~~~~~~~~~~Dv   64 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAA-EGAKLS-LVDVSS--EGLEASK--------------AAVLET---APDAEVLTTVADV   64 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH--------------HHHHHH---CTTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH--------------HHHHhh---CCCCeEEEEeccC
Confidence            577889999999999998874 678865 455431  1111110              111110   01222   34588


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYV  137 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGT  137 (257)
                      |.++.....+..+.+.  ++.++|-.
T Consensus        65 t~~~~v~~~~~~~~~~~G~iDiLVnn   90 (258)
T d1iy8a_          65 SDEAQVEAYVTATTERFGRIDGFFNN   90 (258)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            9999988888877663  57887743

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.76  E-value=2.2  Score=34.49  Aligned_cols=81  Identities=17%  Similarity=0.190  Sum_probs=48.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE---EEEc
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vIDF  113 (257)
                      .+.|.|+++.+|+++++.++ ..+..++. .++.. .....++.              +++.+.    ....+   ..|.
T Consensus         6 ~alITGas~GIG~aiA~~la-~~Ga~V~~-~~r~~-~~~~~~~~--------------~~~~~~----~g~~~~~~~~Dv   64 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALA-AQGADIVL-NGFGD-AAEIEKVR--------------AGLAAQ----HGVKVLYDGADL   64 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHH-HTTCEEEE-ECCSC-HHHHHHHH--------------HHHHHH----HTSCEEEECCCT
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HCCCEEEE-EeCCc-HHHHHHHH--------------HHHHHh----cCCcEEEEECCC
Confidence            46788999999999999887 46787653 33321 01111110              111111    12333   3588


Q ss_pred             CChHhHHHHHHHHHHc--CCCeEEeCC
Q 025154          114 TDASTVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       114 T~p~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      |.++...+.+..+.+.  ++.++|=.-
T Consensus        65 ~~~~~v~~~~~~~~~~~G~iDiLVnnA   91 (260)
T d1x1ta1          65 SKGEAVRGLVDNAVRQMGRIDILVNNA   91 (260)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcEEEeec
Confidence            8888888888777653  578887443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.67  E-value=1.4  Score=35.76  Aligned_cols=80  Identities=13%  Similarity=0.110  Sum_probs=49.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p  116 (257)
                      .+.|.|+++.+|+++++.+++ .+..++ +.+++.  ...                  +++.+++. ....-+..|.+.+
T Consensus         8 ~alITGas~GIG~aia~~la~-~Ga~V~-~~~~~~--~~~------------------~~~~~~~~-~~~~~~~~Dv~~~   64 (253)
T d1hxha_           8 VALVTGGASGVGLEVVKLLLG-EGAKVA-FSDINE--AAG------------------QQLAAELG-ERSMFVRHDVSSE   64 (253)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-TTCEEE-EECSCH--HHH------------------HHHHHHHC-TTEEEECCCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHH------------------HHHHHHhC-CCeEEEEeecCCH
Confidence            577889999999999998874 678865 445421  111                  11111100 0111234577888


Q ss_pred             HhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          117 STVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       117 ~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      +...+.+..+.+.  ++.+++-..|
T Consensus        65 ~~~~~~~~~~~~~~g~iDilVnnAG   89 (253)
T d1hxha_          65 ADWTLVMAAVQRRLGTLNVLVNNAG   89 (253)
T ss_dssp             HHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCeEEeccc
Confidence            8888888777654  6777776654

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.65  E-value=0.85  Score=40.22  Aligned_cols=88  Identities=17%  Similarity=0.230  Sum_probs=58.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC--HHHHHhccccCCCccEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID  112 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVvID  112 (257)
                      ..+|.+.|| |.-|+..++.+. ..++++++++|.....+  ++.     -.|+||.+.  +.+....    ..-.+.|+
T Consensus        38 ~~~~~l~g~-~~~~~~~~~~~~-~~~~~v~~~~d~~~~~~--~~~-----~~g~pv~s~~~~~~~~~~----~~~~~~v~  104 (395)
T d2py6a1          38 ATRLVILGT-KGFGAHLMNVRH-ERPCEVIAAVDDFRYHS--GEL-----YYGLPIISTDRFTELATH----DRDLVALN  104 (395)
T ss_dssp             GCEEEEECS-SSTHHHHHSCSS-SCSSEEEEEECTTTTTS--CCE-----ETTEEEECHHHHHHHHHT----CTTEEEEE
T ss_pred             CceEEEEcC-chhHHHHHHHHH-HCCceEEEEecCchhhc--Cce-----ecceEeecHHHhhhhhhc----cCcEEEEE
Confidence            358999996 999999998654 67899999999642111  111     247888642  2233332    23348888


Q ss_pred             cCChHhHHHHH-HHHHHcCCCeEE
Q 025154          113 FTDASTVYDNV-KQATAFGMRSVV  135 (257)
Q Consensus       113 FT~p~~~~~~~-~~a~~~Gi~vVi  135 (257)
                      ++.+....... ..+.+.|+|.+-
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~  128 (395)
T d2py6a1         105 TCRYDGPKRFFDQICRTHGIPHLN  128 (395)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCCEEE
T ss_pred             eccccchhhHHHHHHHhcCCcccc
Confidence            88777776655 666788887753

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.26  E-value=0.89  Score=35.06  Aligned_cols=73  Identities=16%  Similarity=0.085  Sum_probs=41.4

Q ss_pred             CceEEEEcCCC--hHHHHHHHHHHhcCCcE--EEEEEecCCC---Ccchhh-----hhcCCCCCCeeeecCHHHHHhccc
Q 025154           35 NIKVIINGAVK--EIGRAAVIAVTKARGME--VAGAIDSHSV---GEDIGM-----VCDMEQPLEIPVMSDLTMVLGSIS  102 (257)
Q Consensus        35 ~ikV~V~Ga~G--rMG~~i~~~i~~~~~~e--Lvg~vd~~~~---g~d~g~-----~~g~~~~~gv~v~~dl~~~l~~~~  102 (257)
                      +|||+|+|| |  ..+..++..+...+.+.  =+..+|....   ++-...     +.....+..+..++|..+.++   
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~---   76 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALD---   76 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT---
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcC---
Confidence            589999997 7  55577777777666542  2345664210   111111     111111234445788888874   


Q ss_pred             cCCCccEEEEcC
Q 025154          103 QSKARAVVIDFT  114 (257)
Q Consensus       103 ~~~~~DVvIDFT  114 (257)
                         ++|+||.-.
T Consensus        77 ---gaDvVv~ta   85 (169)
T d1s6ya1          77 ---GADFVTTQF   85 (169)
T ss_dssp             ---TCSEEEECC
T ss_pred             ---CCCEEEEcc
Confidence               789888654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.22  E-value=0.96  Score=33.73  Aligned_cols=116  Identities=14%  Similarity=0.128  Sum_probs=57.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--e-e--cCHHHHHhccccCCCccEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--V-M--SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v-~--~dl~~~l~~~~~~~~~DVvI  111 (257)
                      +|+|.|+ |.+|...++.+. ..+.++++ ++....-.+...      .+|..  + +  +++.+.+.+.  ....|.+|
T Consensus        30 ~vlv~G~-G~iG~~a~~~a~-~~g~~v~~-~~~~~~r~~~~k------~~Ga~~~~~~~~~~~~~~~~~~--~~~~~~~v   98 (168)
T d1rjwa2          30 WVAIYGI-GGLGHVAVQYAK-AMGLNVVA-VDIGDEKLELAK------ELGADLVVNPLKEDAAKFMKEK--VGGVHAAV   98 (168)
T ss_dssp             EEEEECC-STTHHHHHHHHH-HTTCEEEE-ECSCHHHHHHHH------HTTCSEEECTTTSCHHHHHHHH--HSSEEEEE
T ss_pred             EEEEeec-ccchhhhhHHHh-cCCCeEec-cCCCHHHhhhhh------hcCcceecccccchhhhhcccc--cCCCceEE
Confidence            6999996 999999887665 56778654 443210111111      12221  1 1  2333332210  13466667


Q ss_pred             EcCChHhHHHHHHHHH-HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          112 DFTDASTVYDNVKQAT-AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       112 DFT~p~~~~~~~~~a~-~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      +++......+....++ ..|.=+++|.++-+ .......-.-++  +.++-+.+.+
T Consensus        99 ~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~-~~~~~~~~~~~~--~~i~gs~~~~  151 (168)
T d1rjwa2          99 VTAVSKPAFQSAYNSIRRGGACVLVGLPPEE-MPIPIFDTVLNG--IKIIGSIVGT  151 (168)
T ss_dssp             ESSCCHHHHHHHHHHEEEEEEEEECCCCSSE-EEEEHHHHHHTT--CEEEECCSCC
T ss_pred             eecCCHHHHHHHHHHhccCCceEecccccCC-CCCCHHHHHHCC--cEEEEEeeCC
Confidence            7775555555555555 45555555554321 111222223444  7777665554

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.07  E-value=1.5  Score=35.61  Aligned_cols=78  Identities=19%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCC-ccEEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA-RAVVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~-~DVvIDFT~  115 (257)
                      .+.|.|+++.+|+++++.+++ .+.+|+. .++..  +.+                  +++.+++   .+ .=+..|.|.
T Consensus         8 ~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~------------------~~~~~~~---~~~~~~~~Dvs~   62 (250)
T d1ydea1           8 VVVVTGGGRGIGAGIVRAFVN-SGARVVI-CDKDE--SGG------------------RALEQEL---PGAVFILCDVTQ   62 (250)
T ss_dssp             EEEEETCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHHC---TTEEEEECCTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHhc---CCCeEEEccCCC
Confidence            588999999999999998874 5788664 45421  111                  1111110   01 114567888


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      ++.....+..+.+.  ++.++|-..|
T Consensus        63 ~~~v~~~~~~~~~~~g~iDilVnnAG   88 (250)
T d1ydea1          63 EDDVKTLVSETIRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            88888887777663  5777775443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.92  E-value=2.6  Score=34.36  Aligned_cols=83  Identities=12%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCc-cEEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDFT~  115 (257)
                      .+.|.|++|.+|+++++.++ ..+.+|+. ++++.  ....+..              +++.++.  .... -+..|++.
T Consensus        27 ~alITGas~GIG~aiA~~la-~~Ga~Vii-~~r~~--~~l~~~~--------------~~l~~~~--g~~~~~~~~D~~~   86 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLS-SLGAQCVI-ASRKM--DVLKATA--------------EQISSQT--GNKVHAIQCDVRD   86 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEE-EESCH--HHHHHHH--------------HHHHHHH--SSCEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHH-HcCCEEEE-EECCH--HHHHHHH--------------HHHHHhc--CCceEEEEecccC
Confidence            47889999999999999887 46888774 44321  1111111              1121110  0111 13457888


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      ++.....+..+.+.  ++.+++-..|
T Consensus        87 ~~~v~~~~~~~~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          87 PDMVQNTVSELIKVAGHPNIVINNAA  112 (294)
T ss_dssp             HHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             hHHHHHHhhhhhhhccccchhhhhhh
Confidence            88887777666553  4777776554

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.88  E-value=2.9  Score=31.61  Aligned_cols=70  Identities=6%  Similarity=-0.009  Sum_probs=37.5

Q ss_pred             ceEEEEcCCChHHHHHH--HHHHhcCC--cEEEEEEecCCC-Ccchhh----hhcCCCCCCeeeecCHHHHHhccccCCC
Q 025154           36 IKVIINGAVKEIGRAAV--IAVTKARG--MEVAGAIDSHSV-GEDIGM----VCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~--~~i~~~~~--~eLvg~vd~~~~-g~d~g~----~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (257)
                      |||+|+|| |..|...+  ..+....+  ..-+..+|.... .+.+.+    ...  .+..+.++++.++.++      +
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~--~~~~~~~t~~~~~~l~------~   71 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK--DRFKVLISDTFEGAVV------D   71 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT--TSSEEEECSSHHHHHT------T
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhc--cCceEEEecCcccccC------C
Confidence            79999997 86664443  22332332  223446774310 000111    111  2345666788888885      7


Q ss_pred             ccEEEEcC
Q 025154          107 RAVVIDFT  114 (257)
Q Consensus       107 ~DVvIDFT  114 (257)
                      +|+||--.
T Consensus        72 aDvVVita   79 (162)
T d1up7a1          72 AKYVIFQF   79 (162)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEec
Confidence            89877543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=84.86  E-value=0.5  Score=37.11  Aligned_cols=58  Identities=29%  Similarity=0.553  Sum_probs=39.1

Q ss_pred             ccceeeeeccccccccccCccccccCCCC------------CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154            4 LGCQFHCRMHHISQNVKAKRFISCSTNPP------------QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .||..-| |.    ++-..+..+|+-||.            ..+-||+|+|+ |=.|-..+..+. ..+++++ +++.
T Consensus         5 i~C~~~C-~~----~~~~~~~~~C~~Np~~g~e~~~~~~~~~~~k~V~IIGa-GPAGL~AA~~la-~~G~~Vt-l~E~   74 (179)
T d1ps9a3           5 IGCNQAC-LD----QIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGA-GPAGLAFAINAA-ARGHQVT-LFDA   74 (179)
T ss_dssp             CCCCTTT-HH----HHHTTCCCCCSSCTTTTCTTTSCCCSCSSCCEEEEECC-SHHHHHHHHHHH-TTTCEEE-EEES
T ss_pred             cccHHHH-hh----HhhcCCeeEEeeCccccCccccccCCCCCCcEEEEECc-cHHHHHHHHHHH-hhccceE-EEec
Confidence            4676666 11    222334556876654            45679999996 999999998765 5678765 6774

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.80  E-value=4.7  Score=32.32  Aligned_cols=78  Identities=14%  Similarity=0.140  Sum_probs=47.2

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEcC
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDFT  114 (257)
                      +.|.|+++.+|+++++.++ ..+..|+ ++++..  ..+.++.               +.+.+    ...+   +..|+|
T Consensus        13 alITGas~GIG~a~a~~la-~~Ga~V~-~~~r~~--~~l~~~~---------------~~l~~----~g~~~~~~~~Dvt   69 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLA-KSVSHVI-CISRTQ--KSCDSVV---------------DEIKS----FGYESSGYAGDVS   69 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHT-TTSSEEE-EEESSH--HHHHHHH---------------HHHHT----TTCCEEEEECCTT
T ss_pred             EEEeCCCCHHHHHHHHHHH-HcCCEEE-EEECCH--HHHHHHH---------------HHHHh----cCCcEEEEEccCC
Confidence            5577999999999999886 5678765 455431  1111111               11111    1222   456788


Q ss_pred             ChHhHHHHHHHHHHc--CCCeEEeCC
Q 025154          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      .++...+.+..+.+.  ++.++|-..
T Consensus        70 ~~~~v~~~~~~~~~~~g~iDilvnna   95 (251)
T d2c07a1          70 KKEEISEVINKILTEHKNVDILVNNA   95 (251)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCceeeeecc
Confidence            888888888777654  566776543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.53  E-value=1.2  Score=34.89  Aligned_cols=31  Identities=29%  Similarity=0.264  Sum_probs=22.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      .|+|+|| |.+|...++.+.. -+..-+.++|+
T Consensus        28 tVlV~Ga-G~vGl~a~~~ak~-~ga~~Vi~~d~   58 (195)
T d1kola2          28 TVYVAGA-GPVGLAAAASARL-LGAAVVIVGDL   58 (195)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCSEEEEEES
T ss_pred             EEEEECc-CHHHHHHHHHHHh-hcccceeeecc
Confidence            6999996 9999988876654 45544555664

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.47  E-value=3.1  Score=33.61  Aligned_cols=85  Identities=20%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      .+.|.|+++.+|+++++.++ ..+.+|+ +.+++.  ..+.++.              +++.+.-....++. +..|.|.
T Consensus         7 valVTGas~GIG~aia~~la-~~Ga~V~-~~~r~~--~~l~~~~--------------~~l~~~~~~~~~~~~~~~Dvt~   68 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFA-REGAKVT-ITGRHA--ERLEETR--------------QQILAAGVSEQNVNSVVADVTT   68 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHH-HTTCEEE-EEESCH--HHHHHHH--------------HHHHHTTCCGGGEEEEECCTTS
T ss_pred             EEEEeCcCCHHHHHHHHHHH-HCCCEEE-EEECCH--HHHHHHH--------------HHHHhcCCCcCceEEEEccCCC
Confidence            35677999999999999887 4688865 445431  1111111              11111000000111 3568899


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      ++...+.+..+.+.  ++.++|-..|
T Consensus        69 ~~~v~~~~~~~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          69 DAGQDEILSTTLGKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEeecccc
Confidence            99888888887764  6888875544

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.46  E-value=0.56  Score=40.00  Aligned_cols=88  Identities=10%  Similarity=-0.031  Sum_probs=53.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      -+++|+| +|.+++.+++++.....++=+-++++..  .....+...-...++.+..+.++.+.      .+||||-.|.
T Consensus       126 ~~l~iiG-aG~QA~~~~~al~~~~~i~~i~v~~r~~--e~~~~~~~~~~~~~~~~~~~~~~a~~------~aDiV~taT~  196 (320)
T d1omoa_         126 SVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISASVQPAEEAS------RCDVLVTTTP  196 (320)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEEECCHHHHT------SSSEEEECCC
T ss_pred             cEEEEec-CcccHHHHHHHHHHHhhhhhcccccCCH--HHHHHHHHHHHhcCCccccchhhhhc------cccEEEEecc
Confidence            4799999 5999999999988766677777787531  11111111101234555556667664      7999886663


Q ss_pred             -hHhHHHHHHHHHHcCCCeE
Q 025154          116 -ASTVYDNVKQATAFGMRSV  134 (257)
Q Consensus       116 -p~~~~~~~~~a~~~Gi~vV  134 (257)
                       .+.+.+  ...++.|.+|.
T Consensus       197 s~~P~~~--~~~l~~G~hv~  214 (320)
T d1omoa_         197 SRKPVVK--AEWVEEGTHIN  214 (320)
T ss_dssp             CSSCCBC--GGGCCTTCEEE
T ss_pred             Ccccccc--hhhcCCCCeEe
Confidence             111111  12357787765

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=84.39  E-value=2.4  Score=34.74  Aligned_cols=75  Identities=12%  Similarity=0.014  Sum_probs=49.1

Q ss_pred             CCCeeeecCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 025154           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (257)
Q Consensus        85 ~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi--~vViGTTG~s~e~~~~L~~~a~~~gipvl~  161 (257)
                      +.|+.+++|..++++      ++|++|-.. .++...+.++..+++-.  .+|+-++..+.....++.+..++.++.++=
T Consensus       126 e~Gv~v~~d~~Eav~------~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~  199 (242)
T d2b0ja2         126 DVGLKVTSDDREAVE------GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITS  199 (242)
T ss_dssp             GGTCEEESCHHHHHT------TCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             HCCCEEECCHHHHHh------cCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEEC
Confidence            356788899999885      799988776 34555666655544332  255555555666677787777777788763


Q ss_pred             ccCc
Q 025154          162 APTL  165 (257)
Q Consensus       162 spNf  165 (257)
                      ...|
T Consensus       200 ~hp~  203 (242)
T d2b0ja2         200 YHPG  203 (242)
T ss_dssp             CBCS
T ss_pred             CCcc
Confidence            3333

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.38  E-value=0.48  Score=39.39  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=26.7

Q ss_pred             eE-EEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        37 kV-~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      || .|+|++|-+|+.+++.+.+ .+++++++.-
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~-~g~~V~~i~r   33 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLE-KGYEVHGIVR   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CEEEEecCCcHHHHHHHHHHHH-CcCEEEEEEC
Confidence            78 6999999999999999886 5899888653

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.35  E-value=0.49  Score=37.93  Aligned_cols=31  Identities=35%  Similarity=0.468  Sum_probs=26.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      ||.|+|++|.+|+++++.+.+ .+.+|+. +|+
T Consensus         4 kVlITGas~GIG~aia~~l~~-~G~~V~~-~~~   34 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKK-NGYTVLN-IDL   34 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTEEEEE-EES
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CCCEEEE-EEC
Confidence            799999999999999999885 5888664 564

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=84.24  E-value=3.2  Score=30.48  Aligned_cols=117  Identities=13%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCCCeee-e---cCHHHHHhccccCCCccEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~g~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVvI  111 (257)
                      .|.|+|+ |++|+.+++.+.+. +.+++.+-..+. ......+..    ..++.+ +   .+.+ .+.+ +.-.++|++|
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~-~~~v~vId~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~-~L~~-a~i~~a~~vi   76 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQR-GQNVTVISNLPEDDIKQLEQRL----GDNADVIPGDSNDSS-VLKK-AGIDRCRAIL   76 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHH----CTTCEEEESCTTSHH-HHHH-HTTTTCSEEE
T ss_pred             EEEEECC-CHHHHHHHHHHHHc-CCCEEEEeccchhHHHHHHHhh----cCCcEEEEccCcchH-HHHH-hccccCCEEE
Confidence            5899995 99999999988754 677664432210 000111111    234433 2   2332 2221 0013688888


Q ss_pred             EcCC-hHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154          112 DFTD-ASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (257)
Q Consensus       112 DFT~-p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSl  167 (257)
                      -.|. .+.....+..+.+.  .+++|+-+  .+++..+.+    ++.|+-.+++|....
T Consensus        77 ~~~~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l----~~~Gad~vi~p~~~~  129 (153)
T d1id1a_          77 ALSDNDADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKI----KMVHPDIILSPQLFG  129 (153)
T ss_dssp             ECSSCHHHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHH----HTTCCSEEECHHHHH
T ss_pred             EccccHHHHHHHHHHHHHhCCCCceEEEE--cCHHHHHHH----HHCCCCEEECHHHHH
Confidence            6664 33334444445453  34555433  234444445    456788888885443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.17  E-value=3.8  Score=32.70  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=47.6

Q ss_pred             EEEEcCCChHHHHHHHHHHhcCCcE------EEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---
Q 025154           38 VIINGAVKEIGRAAVIAVTKARGME------VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---  108 (257)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~e------Lvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---  108 (257)
                      |.|.|+++.+|+++++.+++. +..      .+...++..  .++.++.              +++-+     ....   
T Consensus         4 vlITGas~GIG~aia~~la~~-G~~~~~~~~~v~~~~r~~--~~l~~~~--------------~~~~~-----~g~~~~~   61 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTA--ADLEKIS--------------LECRA-----EGALTDT   61 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCH--HHHHHHH--------------HHHHT-----TTCEEEE
T ss_pred             EEEccCCCHHHHHHHHHHHHh-CccccccCcEEEEEeCCH--HHHHHHH--------------HHHHh-----cCCcEEE
Confidence            468899999999999988753 443      233444321  1111111              11111     1222   


Q ss_pred             EEEEcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          109 VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       109 VvIDFT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      +..|.|.++...+.+..+.+.  ++.+++=..|
T Consensus        62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg   94 (240)
T d2bd0a1          62 ITADISDMADVRRLTTHIVERYGHIDCLVNNAG   94 (240)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             EEecCCCHHHHHHHHHHHHHHcCCcceeecccc
Confidence            345888999888888877664  5778875544

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.10  E-value=0.43  Score=39.88  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=26.5

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (257)
                      -||.|+|++|-+|+.+++.+.+ .+.+++++.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~-~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLE-AGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHH-CcCEEEEEE
Confidence            3899999999999999999885 478888753

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.84  E-value=1.5  Score=34.71  Aligned_cols=65  Identities=23%  Similarity=0.309  Sum_probs=41.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~  115 (257)
                      .+|+|+| +|--|++++..+. +.++.++-++.+.  +.... .+   ..-|..+ -+++++..      .+|++.-.++
T Consensus        17 k~IaViG-YGsQG~AhAlNLr-DSG~~V~VGLr~g--s~s~~-~A---~~~Gf~v-~~~~eA~~------~aDiim~L~P   81 (182)
T d1np3a2          17 KKVAIIG-YGSQGHAHACNLK-DSGVDVTVGLRSG--SATVA-KA---EAHGLKV-ADVKTAVA------AADVVMILTP   81 (182)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHH-HTTCCEEEECCTT--CHHHH-HH---HHTTCEE-ECHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEe-eCcHhHHHHhhhh-hcCCCEEEEcCCC--CccHH-HH---hhhcccc-ccHHHHhh------hcCeeeeecc
Confidence            5899999 7999999999876 6788887666432  11111 11   1223333 36667764      6898775553

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.77  E-value=0.62  Score=35.28  Aligned_cols=32  Identities=25%  Similarity=0.229  Sum_probs=25.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      ||+|+|++|+.|+.++-.+...+-..=...+|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D   33 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVD   33 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence            89999988999999998888765554334677

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.70  E-value=2  Score=34.63  Aligned_cols=30  Identities=37%  Similarity=0.604  Sum_probs=24.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      .++.|.|+++.+|+++++.++ ..+.+++..
T Consensus         6 K~alITGas~GIG~aia~~la-~~Ga~V~~~   35 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALH-ASGAKVVAV   35 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEE
Confidence            367899999999999999887 468887653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.59  E-value=2.6  Score=34.28  Aligned_cols=83  Identities=20%  Similarity=0.231  Sum_probs=50.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEE
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID  112 (257)
                      -.+.|.|+++.+|+++++.+++ .+..|+. .++..  ..+.++.               +.+.+.. .....   +..|
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~l-~~r~~--~~l~~~~---------------~~l~~~~-~~~~~~~~~~~D   65 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQ-EGANVTI-TGRSS--ERLEETR---------------QIILKSG-VSEKQVNSVVAD   65 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH---------------HHHHTTT-CCGGGEEEEECC
T ss_pred             CEEEEeCcCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH---------------HHHHhcC-CCCCceEEEEcc
Confidence            3688889999999999998874 5787654 44421  1111111               1111000 00111   4568


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeCC
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      .|.++.....+..+.+.  ++.+++-..
T Consensus        66 vs~~~~v~~~~~~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          66 VTTEDGQDQIINSTLKQFGKIDVLVNNA   93 (272)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCceEEEeCC
Confidence            89999988888887764  688887543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.58  E-value=0.59  Score=38.95  Aligned_cols=31  Identities=23%  Similarity=0.229  Sum_probs=26.4

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      |.+|.|+|++|-+|+.+++.+.+ .+.++.++
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~-~g~~V~~~   46 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLK-LDQKVVGL   46 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHH-CcCEEEEE
Confidence            45889999999999999998875 58898874

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=0.93  Score=34.61  Aligned_cols=32  Identities=9%  Similarity=0.264  Sum_probs=24.9

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      .+|.|+|+ |..+|+++-.+.+ .+.+ +-++++.
T Consensus        19 k~vlIlGa-GGaarai~~al~~-~g~~-i~I~nRt   50 (170)
T d1nyta1          19 LRILLIGA-GGASRGVLLPLLS-LDCA-VTITNRT   50 (170)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCE-EEEECSS
T ss_pred             CEEEEECC-cHHHHHHHHHhcc-cceE-EEeccch
Confidence            58999996 9999999988775 4677 5566653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.44  E-value=0.63  Score=38.15  Aligned_cols=83  Identities=16%  Similarity=0.108  Sum_probs=50.0

Q ss_pred             CceEE-EEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEE
Q 025154           35 NIKVI-INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (257)
Q Consensus        35 ~ikV~-V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID  112 (257)
                      -+||+ |.|+++.+|+++++.+++..+..++.. +++.  ....+..              +++-++   ..++. +..|
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~-~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~D   61 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLT-ARDV--TRGQAAV--------------QQLQAE---GLSPRFHQLD   61 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEE-ESSH--HHHHHHH--------------HHHHHT---TCCCEEEECC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEE-ECCH--HHHHHHH--------------HHHHhc---CCcEEEEEEe
Confidence            36885 679999999999999887667776643 3321  1111110              111110   01233 3468


Q ss_pred             cCChHhHHHHHHHHHHc--CCCeEEeC
Q 025154          113 FTDASTVYDNVKQATAF--GMRSVVYV  137 (257)
Q Consensus       113 FT~p~~~~~~~~~a~~~--Gi~vViGT  137 (257)
                      .|.++...+.+..+.+.  ++.++|--
T Consensus        62 vs~~~sv~~~~~~~~~~~g~iDiLVnN   88 (275)
T d1wmaa1          62 IDDLQSIRALRDFLRKEYGGLDVLVNN   88 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred             cCCHHHHHHHHHHHHHhcCCcEEEEEc
Confidence            88888888887777653  57777743

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.37  E-value=1.4  Score=34.39  Aligned_cols=62  Identities=19%  Similarity=0.188  Sum_probs=40.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF  113 (257)
                      ..+|+|+| +|++|+.+++.+. .=++++.+ +|+.. ..+...      ..++. +.++++++.      .+|+|+-.
T Consensus        44 ~k~vgiiG-~G~IG~~va~~~~-~fg~~v~~-~d~~~-~~~~~~------~~~~~-~~~l~ell~------~sDiv~~~  105 (184)
T d1ygya1          44 GKTVGVVG-LGRIGQLVAQRIA-AFGAYVVA-YDPYV-SPARAA------QLGIE-LLSLDDLLA------RADFISVH  105 (184)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHH-TTTCEEEE-ECTTS-CHHHHH------HHTCE-ECCHHHHHH------HCSEEEEC
T ss_pred             ceeeeecc-ccchhHHHHHHhh-hccceEEe-ecCCC-ChhHHh------hcCce-eccHHHHHh------hCCEEEEc
Confidence            35899999 5999999999765 45787764 56431 111111      11222 468999996      69987744

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.34  E-value=2.8  Score=33.78  Aligned_cols=85  Identities=19%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      .+.|.|+++.+|+++++.+++ .+..++. +++..  +...+..              +++.+.. ...++. +..|.|.
T Consensus         5 valITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~~--------------~~l~~~~-~~~~~~~~~~Dv~~   65 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLL-KGAKVAL-VDWNL--EAGVQCK--------------AALHEQF-EPQKTLFIQCDVAD   65 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHTTTS-CGGGEEEEECCTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHhc-CCCcEEEEEeecCC
Confidence            467889999999999998874 6888654 44421  1111110              1111100 000111 3458888


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVPHI  140 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTTG~  140 (257)
                      ++...+.+..+.+.  ++.+++-..|.
T Consensus        66 ~~~v~~~~~~~~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          66 QQQLRDTFRKVVDHFGRLDILVNNAGV   92 (254)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCcCeecccccc
Confidence            88888888877653  57888876653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.19  E-value=2.3  Score=34.75  Aligned_cols=84  Identities=25%  Similarity=0.301  Sum_probs=50.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcCC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT~  115 (257)
                      .+.|.|+++.+|+++++.+++ .+..++ +.++..  ..+.++.              +++.+.-....++. +..|.|.
T Consensus         6 ~alITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~~--------------~~i~~~~~~~~~~~~~~~Dv~~   67 (274)
T d1xhla_           6 SVIITGSSNGIGRSAAVIFAK-EGAQVT-ITGRNE--DRLEETK--------------QQILKAGVPAEKINAVVADVTE   67 (274)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH--------------HHHHHTTCCGGGEEEEECCTTS
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH--------------HHHHHcCCCCcceEEEEeeCCC
Confidence            578999999999999998875 588866 445431  1111111              11111000000111 4568899


Q ss_pred             hHhHHHHHHHHHHc--CCCeEEeCC
Q 025154          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (257)
Q Consensus       116 p~~~~~~~~~a~~~--Gi~vViGTT  138 (257)
                      ++...+.+..+.+.  ++.+++-..
T Consensus        68 ~~~v~~~~~~~~~~~G~iDilVnnA   92 (274)
T d1xhla_          68 ASGQDDIINTTLAKFGKIDILVNNA   92 (274)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCceEEEeec
Confidence            99988888877754  577887543

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.92  E-value=1.9  Score=34.79  Aligned_cols=73  Identities=12%  Similarity=0.106  Sum_probs=44.4

Q ss_pred             eEEEE-cCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EE
Q 025154           37 KVIIN-GAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VV  110 (257)
Q Consensus        37 kV~V~-Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---Vv  110 (257)
                      ||+|+ |+++.+|+++++.+++  ..+..++. ++++.  ..+.++.              +++..+   ..+..   +.
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~-~~r~~--~~l~~~~--------------~~l~~~---~~~~~~~~~~   66 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLV-SARSE--SMLRQLK--------------EELGAQ---QPDLKVVLAA   66 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEE-EESCH--HHHHHHH--------------HHHHHH---CTTSEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEE-EECCH--HHHHHHH--------------HHHHhh---cCCceEEEEE
Confidence            56555 9999999999999875  47888775 44321  1111111              111110   01222   34


Q ss_pred             EEcCChHhHHHHHHHHHHc
Q 025154          111 IDFTDASTVYDNVKQATAF  129 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~  129 (257)
                      .|.|.++.....+..+.+.
T Consensus        67 ~Dvs~~~~v~~l~~~~~~~   85 (259)
T d1oaaa_          67 ADLGTEAGVQRLLSAVREL   85 (259)
T ss_dssp             CCTTSHHHHHHHHHHHHHS
T ss_pred             ccCCCHHHHHHHHHHHHHh
Confidence            6889999999888887764

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.49  E-value=0.74  Score=37.91  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=27.4

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (257)
                      -++.|+||+|-+|+.+++.+.+ .+++++++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~-~g~~V~~~~r   33 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLG-KGYEVHGLIR   33 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CEEEEeCCccHHHHHHHHHHHH-CcCEEEEEEC
Confidence            4688999999999999999875 6899887664

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.46  E-value=1.9  Score=34.90  Aligned_cols=86  Identities=23%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             CCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc--
Q 025154           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA--  108 (257)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D--  108 (257)
                      |=+++ .+.|.|+++.+|+++++.++ ..+++++-..++..  +...++               .+.+.+    ...+  
T Consensus         3 ~L~GK-~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~--~~~~~~---------------~~~~~~----~g~~~~   59 (259)
T d1ja9a_           3 PLAGK-VALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSS--KAAEEV---------------VAELKK----LGAQGV   59 (259)
T ss_dssp             TTTTC-EEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTCCEE
T ss_pred             CCCCC-EEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCCh--HHHHHH---------------HHHHHH----cCCCce
Confidence            33443 57899999999999999887 46888874444321  111111               111211    1233  


Q ss_pred             -EEEEcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          109 -VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       109 -VvIDFT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                       +..|++.++...+.+..+.+.  ++.++|-..|
T Consensus        60 ~~~~D~~~~~~v~~~~~~~~~~~g~idilinnag   93 (259)
T d1ja9a_          60 AIQADISKPSEVVALFDKAVSHFGGLDFVMSNSG   93 (259)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             EecCCCCCHHHHHHHHHHHHHHcCCCcEEEeccc
Confidence             456888888888877776653  5666765544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.13  E-value=3  Score=30.93  Aligned_cols=28  Identities=36%  Similarity=0.425  Sum_probs=22.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (257)
                      +|+|.|+ |.+|...++.+. .-+.+++++
T Consensus        30 ~VlV~Ga-G~vG~~~~~~ak-~~G~~Vi~~   57 (166)
T d1llua2          30 WVAISGI-GGLGHVAVQYAR-AMGLHVAAI   57 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEEEE
T ss_pred             EEEEeec-cccHHHHHHHHH-HcCCcccee
Confidence            6999996 999999998765 457887754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=82.07  E-value=0.45  Score=36.54  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=24.7

Q ss_pred             ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (257)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (257)
                      .||.|+|+ |.++++++..+.+ .++.-+-++++.
T Consensus        18 ~~vlIlGa-GGaarai~~aL~~-~g~~~I~I~nR~   50 (167)
T d1npya1          18 AKVIVHGS-GGMAKAVVAAFKN-SGFEKLKIYARN   50 (167)
T ss_dssp             SCEEEECS-STTHHHHHHHHHH-TTCCCEEEECSC
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-CCCCEEEEeccc
Confidence            58999995 9999999988764 465444566653

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=82.03  E-value=0.13  Score=40.55  Aligned_cols=93  Identities=15%  Similarity=0.150  Sum_probs=56.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCH--HHHHhccccCCCccEEEEcC
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVIDFT  114 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl--~~~l~~~~~~~~~DVvIDFT  114 (257)
                      .|.|.|++|..|+..++.+. .-+.++++...++.. .+.-.-+|.   ..+.-+++.  .+.+.+    ...|++||+-
T Consensus        34 ~vlV~gasGGVG~~aiQlAk-~~Ga~Via~~~~~~k-~~~~~~lGa---d~vi~~~~~~~~~~l~~----~~~~~vvD~V  104 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLH-KLGYQVVAVSGREST-HEYLKSLGA---SRVLPRDEFAESRPLEK----QVWAGAIDTV  104 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCGGG-HHHHHHHTE---EEEEEGGGSSSCCSSCC----CCEEEEEESS
T ss_pred             cEEEEEccccchHHHHHHHH-HcCCCeEEEecchhH-HHHHHhhcc---ccccccccHHHHHHHHh----hcCCeeEEEc
Confidence            59999999999999998665 579999987754311 111111111   011112221  112221    4579999998


Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCC
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVP  138 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTT  138 (257)
                      --+.....+......|.=+.+|..
T Consensus       105 gg~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2         105 GDKVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             CHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             chHHHHHHHHHhccccceEeeccc
Confidence            766666666666667777777755

>d1ko7a1 c.98.2.1 (A:1-129) HPr kinase/phoshatase HprK N-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: HprK N-terminal domain-like
family: HPr kinase/phoshatase HprK N-terminal domain
domain: HPr kinase/phoshatase HprK N-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=81.85  E-value=0.4  Score=35.27  Aligned_cols=50  Identities=2%  Similarity=0.005  Sum_probs=40.8

Q ss_pred             ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (257)
Q Consensus       115 ~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS  166 (257)
                      .++...+.++.+.+.++|.++=|.|+...+  .+.++|++.++|++.+|==+
T Consensus        65 ~~~~~~~~i~~l~~~~~~~lIit~g~~~p~--~li~~a~~~~iPll~t~~~t  114 (129)
T d1ko7a1          65 PDEERKGRMRKLCRPETPAIIVTRDLEPPE--ELIEAAKEHETPLITSKIAT  114 (129)
T ss_dssp             CHHHHTTHHHHHCCTTCCCEEECTTCCCCH--HHHHHHHHTTCCEEECCSCH
T ss_pred             CcHHHHHHHHHHhCCCCcEEEEECCCCCCH--HHHHHHHHhCCeEEEeCCcH
Confidence            466667888999999999999999987543  68888999999999888433

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.84  E-value=1.5  Score=32.90  Aligned_cols=28  Identities=25%  Similarity=0.263  Sum_probs=24.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHhcCCcEEEE
Q 025154           37 KVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (257)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg   65 (257)
                      ||+|++.+|..|-..+..+. ..+++|..
T Consensus         5 rvaiit~sGG~~~l~aD~~~-~~Gl~l~~   32 (163)
T d2csua3           5 KVAIMTNAGGPGVLTADELD-KRGLKLAT   32 (163)
T ss_dssp             EEEEEESCHHHHHHHHHHHH-TTTCEECC
T ss_pred             eEEEEECChHHHHHHHHHHH-HcCCccCC
Confidence            89999999999999999775 66888854

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.30  E-value=1.1  Score=30.59  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=24.7

Q ss_pred             CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (257)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (257)
                      |.+|+|+|+ |..||+++.+.. .=++++. ++|+
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~-~LG~~v~-vldp   32 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGE-PLGIAVW-PVGL   32 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHG-GGTEEEE-EECT
T ss_pred             CCEEEEEcC-CHHHHHHHHHHH-HcCCEEE-EEcC
Confidence            568999995 999999998654 5578766 4554

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=80.22  E-value=4.6  Score=32.22  Aligned_cols=99  Identities=17%  Similarity=0.157  Sum_probs=49.9

Q ss_pred             ceEEE-EcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchh----hhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154           36 IKVII-NGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG----MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (257)
Q Consensus        36 ikV~V-~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g----~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv  110 (257)
                      |.|+| .|+++++|+++++.++ ..+.+++-...+..  ..+.    ++........+.+..|.......  .....+..
T Consensus         2 ~pVAlITGas~GIG~aiA~~la-~~Ga~V~i~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~   76 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLH-AEGYAVCLHYHRSA--AEANALSATLNARRPNSAITVQADLSNVATA--PVSGADGS   76 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSCBC--CCC----C
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCCH--HHHHHHHHHHHhhcCCceEEEEeeccccccc--cccccccc
Confidence            45655 5999999999999887 56888775443321  1111    11100001111222221111100  00012234


Q ss_pred             EEcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154          111 IDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (257)
Q Consensus       111 IDFT~p~~~~~~~~~a~~~--Gi~vViGTTG  139 (257)
                      .|.|.++...+.+..+.+.  ++.++|-..|
T Consensus        77 ~dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG  107 (284)
T d1e7wa_          77 APVTLFTRCAELVAACYTHWGRCDVLVNNAS  107 (284)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCEEEecCC
Confidence            5667778777777776654  6888886554