Citrus Sinensis ID: 025188

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MGSGSRGLLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATEASSSSSSFTGGDSINPLASSSVNGAAFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK
ccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHcc
ccccccEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHcccccccHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHcc
mgsgsrglllcksssslvflipsftcnnlrfNKTIANSRAHRmateassssssftggdsinplasssvngaafssssssVIDFLSLCHRLKTTKragwvkrnvnnpesiADHMYRMGLMGLImadipgidrdkcIKMAIVHDIAEAivgditpsdgipkeekSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK
mgsgsrglLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATeassssssftGGDSINPLASSSVNGAAFSSSSSSVIDFLSLCHRLKttkragwvkrnvnnpesiADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEaivgditpsdgipkeeksqreREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK
MGSGSRGLLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATEAssssssFTGGDSINPLasssvngaafssssssVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK
*******LLLCKSSSSLVFLIPSFTCNNLRFNKTIA*******************************************VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDIT****************AITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYEN*****LEEFFQSTAGKFQTELGKAWAAE*******
**********CKSSSSLVFLIPSFTCNNLR**************************************************IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRR**
MGSGSRGLLLCKSSSSLVFLIPSFTCNNLRFNKTIANSR*****************GDSINPLASSSV***********VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGI********EREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK
****SRGLLLCKSSSSLVFLIPSFTCNNLRFNKTIA***************************************SSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRR**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSGSRGLLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATEASSSSSSFTGGDSINPLASSSVNGAAFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
Q1LUI2200 HD domain-containing prot yes no 0.621 0.795 0.503 2e-42
Q54FK1190 HD domain-containing prot yes no 0.691 0.931 0.494 6e-42
Q66L17201 HD domain-containing prot N/A no 0.640 0.815 0.470 2e-41
P87242198 HD domain-containing prot yes no 0.703 0.909 0.470 3e-40
P38331238 HD domain-containing prot yes no 0.683 0.735 0.417 3e-36
Q7Z4H3204 HD domain-containing prot yes no 0.667 0.838 0.517 2e-35
P53144215 HD domain-containing prot no no 0.667 0.795 0.410 4e-35
Q0P565205 HD domain-containing prot yes no 0.671 0.839 0.489 3e-34
Q3SXD3199 HD domain-containing prot yes no 0.644 0.829 0.520 2e-33
>sp|Q1LUI2|HDDC2_DANRE HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1 Back     alignment and function desciption
 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 115/163 (70%), Gaps = 4/163 (2%)

Query: 79  SVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMA 138
           +++ F+ L  +LK   R GWV RN+  PES++DHMYRM +M L + DI  +++++C+K+A
Sbjct: 3   NMLQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLA 61

Query: 139 IVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENST 198
           +VHD+AE IVGDI P+D + K EK +RE++A+ ++  LL  G R KEI  LW EYE  S+
Sbjct: 62  LVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSS 120

Query: 199 AEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFQ 239
            EAK+VK+ D  EMI+QA EYE  +GK   L+EFF ST GKF 
Sbjct: 121 PEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKFH 163

Danio rerio (taxid: 7955)
>sp|Q54FK1|HDDC2_DICDI HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1 Back     alignment and function description
>sp|Q66L17|HDDC2_XENLA HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1 Back     alignment and function description
>sp|P87242|YC0H_SCHPO HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4G3.17 PE=3 SV=1 Back     alignment and function description
>sp|P38331|YB92_YEAST HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR242W PE=1 SV=1 Back     alignment and function description
>sp|Q7Z4H3|HDDC2_HUMAN HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1 Back     alignment and function description
>sp|P53144|YGK1_YEAST HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGL101W PE=1 SV=1 Back     alignment and function description
>sp|Q0P565|HDDC2_BOVIN HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1 Back     alignment and function description
>sp|Q3SXD3|HDDC2_MOUSE HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
359484823235 PREDICTED: HD domain-containing protein 0.878 0.957 0.674 8e-91
297821635257 metal-dependent phosphohydrolase HD doma 0.968 0.964 0.672 3e-88
42570897257 Metal-dependent phosphohydrolase [Arabid 0.968 0.964 0.668 3e-88
110742669254 hypothetical protein [Arabidopsis thalia 0.968 0.976 0.668 4e-88
297743717196 unnamed protein product [Vitis vinifera] 0.746 0.974 0.787 7e-87
449506227226 PREDICTED: HD domain-containing protein 0.824 0.933 0.723 3e-85
224091859207 predicted protein [Populus trichocarpa] 0.691 0.855 0.836 1e-84
226495659246 LOC100281836 precursor [Zea mays] gi|195 0.734 0.764 0.75 5e-84
449454091230 PREDICTED: HD domain-containing protein 0.710 0.791 0.785 8e-83
356498793198 PREDICTED: HD domain-containing protein 0.75 0.969 0.728 1e-80
>gi|359484823|ref|XP_002272377.2| PREDICTED: HD domain-containing protein 2 homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  339 bits (869), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 170/252 (67%), Positives = 200/252 (79%), Gaps = 27/252 (10%)

Query: 13  SSSSLVFL-IPSFTCNNLRFN--KTIA-----NSRAHRMATEASSSSSSFTGGDSINPLA 64
           S SS VFL +P+   + LRFN  +TI      +SR   MA+EASSS++    GD +    
Sbjct: 2   SGSSRVFLGVPTLASSQLRFNSFRTITITSTPSSRVFGMASEASSSAN----GDGV---- 53

Query: 65  SSSVNGAAFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMA 124
                      S+SS IDFL+LCHRLKTTKRAGWVKR VNNPES+ADHM+RMGLM LI +
Sbjct: 54  -----------SASSAIDFLTLCHRLKTTKRAGWVKREVNNPESVADHMFRMGLMALIAS 102

Query: 125 DIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAK 184
           D+ G+DR+KC+KMAIVHDIAEAIVGDITPSDGIPK EKS+REREA+ +MC LLG+G+RAK
Sbjct: 103 DMTGVDRNKCVKMAIVHDIAEAIVGDITPSDGIPKMEKSRREREALDHMCNLLGEGSRAK 162

Query: 185 EIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGK 244
           EI ELW EYEENS+ EAK+VKDFDK EMILQA+EYENEQGKDL+EFF STAGKFQTE+GK
Sbjct: 163 EIAELWTEYEENSSLEAKVVKDFDKVEMILQALEYENEQGKDLDEFFTSTAGKFQTEVGK 222

Query: 245 AWAAEIVSRRKK 256
           AWA+EI SRRK+
Sbjct: 223 AWASEIASRRKE 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297821635|ref|XP_002878700.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324539|gb|EFH54959.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42570897|ref|NP_973522.1| Metal-dependent phosphohydrolase [Arabidopsis thaliana] gi|50253436|gb|AAT71920.1| At2g23820 [Arabidopsis thaliana] gi|58331781|gb|AAW70388.1| At2g23820 [Arabidopsis thaliana] gi|330252401|gb|AEC07495.1| Metal-dependent phosphohydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110742669|dbj|BAE99246.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297743717|emb|CBI36600.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449506227|ref|XP_004162687.1| PREDICTED: HD domain-containing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224091859|ref|XP_002309375.1| predicted protein [Populus trichocarpa] gi|222855351|gb|EEE92898.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|226495659|ref|NP_001148228.1| LOC100281836 precursor [Zea mays] gi|195616818|gb|ACG30239.1| HDDC2 protein [Zea mays] gi|223943231|gb|ACN25699.1| unknown [Zea mays] gi|413935853|gb|AFW70404.1| HDDC2 protein [Zea mays] Back     alignment and taxonomy information
>gi|449454091|ref|XP_004144789.1| PREDICTED: HD domain-containing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356498793|ref|XP_003518233.1| PREDICTED: HD domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
TAIR|locus:2061421257 AT2G23820 [Arabidopsis thalian 0.968 0.964 0.636 1.8e-80
TAIR|locus:2028746258 AT1G26160 [Arabidopsis thalian 0.683 0.678 0.731 5.6e-68
UNIPROTKB|Q7Z4H3204 HDDC2 "HD domain-containing pr 0.613 0.769 0.527 4.6e-41
UNIPROTKB|Q0P565205 HDDC2 "HD domain-containing pr 0.613 0.765 0.515 1.6e-40
UNIPROTKB|F1S2V3205 HDDC2 "Uncharacterized protein 0.613 0.765 0.521 1.6e-40
MGI|MGI:1916942199 Hddc2 "HD domain containing 2" 0.613 0.788 0.527 2e-40
UNIPROTKB|F1N9Z8199 HDDC2 "Uncharacterized protein 0.609 0.783 0.530 3.3e-40
UNIPROTKB|F1PX39200 HDDC2 "Uncharacterized protein 0.578 0.74 0.546 3.3e-40
RGD|1307562199 Hddc2 "HD domain containing 2" 0.613 0.788 0.521 4.2e-40
ZFIN|ZDB-GENE-050522-394200 hddc2 "HD domain containing 2" 0.613 0.785 0.509 4.2e-40
TAIR|locus:2061421 AT2G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 159/250 (63%), Positives = 189/250 (75%)

Query:     8 LLLCKSSSSLVFLIPSFTCNNLRFNKTIANSRAHRMATEAXXXXXXFTGGDSIN-PLXXX 66
             +  CKS S LVFL+PSFT +++RF  + A + +   A          +G  S++ P    
Sbjct:     7 VFFCKSLS-LVFLVPSFTRSHIRFTYSAAGASSPNRAIHCMASDSPQSGDGSVSSPPNVA 65

Query:    67 XXXXXXXXXXXXXVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI 126
                           IDFLSLC RLKTT RAGW+KR+V +PESIADHMYRMGLM LI +DI
Sbjct:    66 AVPSSSSSSSASSAIDFLSLCTRLKTTPRAGWIKRDVKDPESIADHMYRMGLMALISSDI 125

Query:   127 PGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEI 186
             PG++RDKC+KMAIVHDIAEAIVGDITPS GI KEEK++RE EA+ +MCKLLG G RAKEI
Sbjct:   126 PGVNRDKCMKMAIVHDIAEAIVGDITPSCGISKEEKNRRESEALEHMCKLLGGGERAKEI 185

Query:   187 DELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAW 246
              ELW EYEENS+ EAK+VKDFDK E+ILQA+EYE +QGKDLEEFFQSTAGKFQT +GKAW
Sbjct:   186 AELWREYEENSSPEAKVVKDFDKVELILQALEYEQDQGKDLEEFFQSTAGKFQTNIGKAW 245

Query:   247 AAEIVSRRKK 256
             A+EIVSRR+K
Sbjct:   246 ASEIVSRRRK 255
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2028746 AT1G26160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z4H3 HDDC2 "HD domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P565 HDDC2 "HD domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2V3 HDDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1916942 Hddc2 "HD domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9Z8 HDDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PX39 HDDC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1307562 Hddc2 "HD domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-394 hddc2 "HD domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3SXD3HDDC2_MOUSENo assigned EC number0.52070.64450.8291yesno
Q7Z4H3HDDC2_HUMANNo assigned EC number0.51700.66790.8382yesno
Q1LUI2HDDC2_DANRENo assigned EC number0.50300.62100.795yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.4__305__AT2G23820.2
annotation not avaliable (257 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
pfam13023163 pfam13023, HD_3, HD domain 3e-56
COG1896193 COG1896, COG1896, Predicted hydrolases of HD super 7e-41
pfam01966111 pfam01966, HD, HD domain 2e-09
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 1e-04
>gnl|CDD|221899 pfam13023, HD_3, HD domain Back     alignment and domain information 
 Score =  176 bits (450), Expect = 3e-56
 Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 87  CHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI--PGIDRDKCIKMAIVHDIA 144
             +LK  KR GW++     PES+A+H + + LM L++A+    G+D  + IKM ++HD+ 
Sbjct: 1   ADKLKFVKRQGWLQDGSR-PESVAEHSWHVALMALLLAEYAGEGVDIARVIKMLLIHDLV 59

Query: 145 EAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIV 204
           E   GDI   D + K+EK +REREA   +  LL    + +E+  LW E+E   T EA+  
Sbjct: 60  EIDAGDIISPDKLDKKEKEEREREAAERIFGLL-PEDQGEELRALWDEFEAGETPEARFA 118

Query: 205 KDFDKAEMILQAVEYE----NEQGKDLEEFFQSTAGKFQTEL 242
           K  D+ E ILQ +EYE          L + +   + K     
Sbjct: 119 KALDRLEPILQNLEYEGDSWAAFEVTLSQVYGRNSTKLAEGS 160

HD domains are metal dependent phosphohydrolases. Length = 163
>gnl|CDD|224808 COG1896, COG1896, Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
KOG3197210 consensus Predicted hydrolases of HD superfamily [ 100.0
PF13023165 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B. 100.0
PRK03826195 5'-nucleotidase; Provisional 100.0
COG1896193 Predicted hydrolases of HD superfamily [General fu 100.0
PF12917215 HD_2: HD containing hydrolase-like enzyme ; PDB: 3 99.93
PRK10119231 putative hydrolase; Provisional 98.46
cd00077145 HDc Metal dependent phosphohydrolases with conserv 98.0
smart00471124 HDc Metal dependent phosphohydrolases with conserv 97.92
TIGR00295164 conserved hypothetical protein TIGR00295. This set 97.8
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 97.78
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 97.53
PRK12705508 hypothetical protein; Provisional 97.31
PRK12703339 tRNA 2'-O-methylase; Reviewed 96.98
PRK12704520 phosphodiesterase; Provisional 96.61
COG2206344 c-di-GMP phosphodiesterase class II (HD-GYP domain 96.57
COG1418222 Predicted HD superfamily hydrolase [General functi 96.56
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 96.41
PRK00106535 hypothetical protein; Provisional 96.27
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 96.06
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 95.81
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 95.78
TIGR00488158 putative HD superfamily hydrolase of NAD metabolis 95.34
COG1713187 Predicted HD superfamily hydrolase involved in NAD 92.11
COG4341186 Predicted HD phosphohydrolase [General function pr 85.5
PF08668196 HDOD: HDOD domain; InterPro: IPR013976 This domain 84.03
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-56  Score=385.13  Aligned_cols=179  Identities=61%  Similarity=1.033  Sum_probs=171.4

Q ss_pred             CcHHHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCCCCC
Q 025188           76 SSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSD  155 (256)
Q Consensus        76 ~~~~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~~~~  155 (256)
                      +..++++|+.++++||+++|+||+.+||++|||||+|||||++++|++.+ .|||.+||++|||+||++|+++|||+|.+
T Consensus        23 ~~~sil~FL~l~~~LK~~~RTGWv~~gv~~pESIadHMYRM~llaml~~d-~~vnr~rC~kiAlVHD~AEslVgditP~~  101 (210)
T KOG3197|consen   23 SSKSILQFLDLLGRLKTTPRTGWVKRGVNEPESIADHMYRMALLAMLIKD-PGVNRERCMKIALVHDIAESLVGDITPSD  101 (210)
T ss_pred             CchHHHHHHHHHHHhccCCCccccccCCCCcchHHHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            33479999999999999999999999999999999999999999999999 59999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHh
Q 025188          156 GIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQS  233 (256)
Q Consensus       156 ~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn--~~l~ef~~~  233 (256)
                      ++++++|+++|-+|++.|++.|++++.++||.+||.|||++.|+||+|||++||++|++||++|++.+|  .++++|| +
T Consensus       102 ~vsKeeK~rre~eamk~ic~~l~~~~~akEi~elw~eYE~~ss~Eak~VKdlDK~eMi~QafEYE~~~ng~~~lq~F~-s  180 (210)
T KOG3197|consen  102 GVSKEEKHRREFEAMKYICQLLIGELRAKEITELWLEYEEASSLEAKFVKDLDKFEMIVQAFEYEKKHNGEKDLQQFF-S  180 (210)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCchhHHHHHhhHHHHHHHHHHHHHHHhcccchHHHHH-H
Confidence            999999999999999999999976789999999999999999999999999999999999999999764  4899999 8


Q ss_pred             hcccccCHHHHHHHHHHHHhhcC
Q 025188          234 TAGKFQTELGKAWAAEIVSRRKK  256 (256)
Q Consensus       234 ~~~~i~t~~~k~~~~~i~~~r~~  256 (256)
                      +.++|+||.+|+|.++|+++|.|
T Consensus       181 t~g~~~~~~vk~w~~el~~~R~~  203 (210)
T KOG3197|consen  181 TVGKFKTPEVKKWVSELLEERQK  203 (210)
T ss_pred             hcccccChHHHHHHHHHHHHHHH
Confidence            89999999999999999999964

>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B Back     alignment and domain information
>PRK03826 5'-nucleotidase; Provisional Back     alignment and domain information
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism Back     alignment and domain information
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism] Back     alignment and domain information
>COG4341 Predicted HD phosphohydrolase [General function prediction only] Back     alignment and domain information
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
4dmb_A204 X-Ray Structure Of Human Hepatitus C Virus Ns5a-Tra 2e-30
2cqz_A177 Crystal Structure Of Ph0347 Protein From Pyrococcus 3e-22
1xx7_A184 Conserved Hypothetical Protein From Pyrococcus Furi 4e-20
1yoy_A175 Predicted Coding Region Af1432 From Archaeoglobus F 1e-09
1ynb_A173 Crystal Structure Of Genomics Apc5600 Length = 173 2e-09
3kh1_A200 Crystal Structure Of Predicted Metal-Dependent Phos 1e-07
>pdb|4DMB|A Chain A, X-Ray Structure Of Human Hepatitus C Virus Ns5a-Transactivated Protein 2 At The Resolution 1.9a, Northeast Structural Genomics Consortium (Nesg) Target Hr6723 Length = 204 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 4/161 (2%)
Query: 80  VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAI 139
           ++ FL L  +LK   R GWV RNV  PES++DH YR  +   ++ D   +++D+C+++A+
Sbjct: 17  LLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHXYRXAVXAXVIKD-DRLNKDRCVRLAL 75
Query: 140 VHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTA 199
           VHD AE IVGDI P+D IPKEEK +RE EA   + +LL +  R KE+ ELW EYE  S+A
Sbjct: 76  VHDXAECIVGDIAPADNIPKEEKHRREEEAXKQITQLLPEDLR-KELYELWEEYETQSSA 134
Query: 200 EAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 238
           EAK VK  D+ E ILQA EYE+ + K   L++F+ STAGKF
Sbjct: 135 EAKFVKQLDQCEXILQASEYEDLEHKPGRLQDFYDSTAGKF 175
>pdb|2CQZ|A Chain A, Crystal Structure Of Ph0347 Protein From Pyrococcus Horikoshii Ot3 Length = 177 Back     alignment and structure
>pdb|1XX7|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu- 403030-001 Length = 184 Back     alignment and structure
>pdb|1YOY|A Chain A, Predicted Coding Region Af1432 From Archaeoglobus Fulgidus Length = 175 Back     alignment and structure
>pdb|1YNB|A Chain A, Crystal Structure Of Genomics Apc5600 Length = 173 Back     alignment and structure
>pdb|3KH1|A Chain A, Crystal Structure Of Predicted Metal-Dependent Phosphohydrolase (Zp_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 At 1.37 A Resolution Length = 200 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
4dmb_A204 HD domain-containing protein 2; structural genomic 4e-60
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 4e-55
2cqz_A177 177AA long hypothetical protein; hypothetical prot 6e-54
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 1e-51
1ynb_A173 Hypothetical protein AF1432; structural genomics, 6e-49
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 9e-42
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 3e-30
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Length = 204 Back     alignment and structure
 Score =  188 bits (477), Expect = 4e-60
 Identities = 88/194 (45%), Positives = 125/194 (64%), Gaps = 4/194 (2%)

Query: 65  SSSVNGAAFSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMA 124
           +S  +       + S++ FL L  +LK   R GWV RNV  PES++DHMYRM +M +++ 
Sbjct: 2   ASVSSATFSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIK 61

Query: 125 DIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAK 184
           D   +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL      K
Sbjct: 62  D-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLP-EDLRK 119

Query: 185 EIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGK--DLEEFFQSTAGKFQTEL 242
           E+ ELW EYE  S+AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF    
Sbjct: 120 ELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPE 179

Query: 243 GKAWAAEIVSRRKK 256
                +E+ + R  
Sbjct: 180 IVQLVSELEAERST 193
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Length = 184 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 177 Back     alignment and structure
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Length = 200 Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Length = 173 Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Length = 201 Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Length = 216 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
4dmb_A204 HD domain-containing protein 2; structural genomic 100.0
1ynb_A173 Hypothetical protein AF1432; structural genomics, 100.0
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 100.0
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 100.0
2cqz_A177 177AA long hypothetical protein; hypothetical prot 100.0
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 100.0
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 100.0
2gz4_A207 Hypothetical protein ATU1052; structural genomics, 99.95
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 98.49
3dto_A223 BH2835 protein; all alpha-helical protein, structu 98.34
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 98.26
2qgs_A225 Protein Se1688; alpha-helical protein, structural 98.17
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 98.14
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 98.13
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 97.96
3tm8_A328 BD1817, uncharacterized protein; HD-GYP, phosphodi 97.38
2hek_A 371 Hypothetical protein; predominantly alpha helical 97.21
3hc1_A305 Uncharacterized HDOD domain protein; HDOD domain p 96.46
2o08_A188 BH1327 protein; putative HD superfamily hydrolase, 95.56
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 95.5
2ogi_A196 Hypothetical protein SAG1661; structural genomics, 95.4
2dqb_A 376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 94.19
2q14_A 410 Phosphohydrolase; BT4208, HD domain, structural ge 92.69
3m1t_A275 Putative phosphohydrolase; structural genomics, jo 90.75
3ljx_A288 MMOQ response regulator; structural genomics, PSI- 89.68
3nr1_A178 HD domain-containing protein 3; stringent response 89.2
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 86.13
3i7a_A281 Putative metal-dependent phosphohydrolase; YP_9268 84.21
1vqr_A297 Hypothetical protein CJ0248; HD-domain/pdease-like 81.36
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1e-54  Score=381.91  Aligned_cols=181  Identities=48%  Similarity=0.814  Sum_probs=171.9

Q ss_pred             CCCCcHHHHHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhhhhhhhcCCC
Q 025188           73 FSSSSSSVIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDIT  152 (256)
Q Consensus        73 ~~~~~~~~~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~~vD~~Kvv~MALiHDL~Ea~tGDI~  152 (256)
                      ....++++++|+.++++||+++||||+.+|++++|||||||||||+||+++++. ++|++||++|||+||++|++||||+
T Consensus        10 ~~~~~~~~~~Fl~~~~~LK~i~R~g~~~~gv~~~ESVAEHS~~vAliA~~l~~~-~vD~~r~~~maL~HDl~E~~tGDit   88 (204)
T 4dmb_A           10 SGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDD-RLNKDRCVRLALVHDMAECIVGDIA   88 (204)
T ss_dssp             ---CHHHHHHHHHHHHHGGGCBCHHHHHTTCSSCCBHHHHHHHHHHHHHHSCCT-TSCHHHHHHHHHHTTTTHHHHCCCC
T ss_pred             cccCHHHHHHHHHHHHHhccCccCCCcCCCCCCCCcHHHHHHHHHHHHHHHccc-cCCHHHHHHHHHhcchHHhhcCCCc
Confidence            345789999999999999999999999999977899999999999999999975 6999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHH
Q 025188          153 PSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGK--DLEEF  230 (256)
Q Consensus       153 ~~~~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~--~l~ef  230 (256)
                      |+++++++.|+++|++|+++++++| |++++++|.+||.|||+++|+||+|||++|||++++||++|++.||.  ++++|
T Consensus        89 p~k~~~~~~k~~~E~~A~~~l~~~L-P~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~llqa~ey~~~Gn~~~~l~~f  167 (204)
T 4dmb_A           89 PADNIPKEEKHRREEEAMKQITQLL-PEDLRKELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDF  167 (204)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTHHH
T ss_pred             cccccchhhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHH
Confidence            8888899999999999999999999 88899999999999999999999999999999999999999999998  99999


Q ss_pred             HHhhcccccCHHHHHHHHHHHHhhc
Q 025188          231 FQSTAGKFQTELGKAWAAEIVSRRK  255 (256)
Q Consensus       231 ~~~~~~~i~t~~~k~~~~~i~~~r~  255 (256)
                      |.++.++|+||.+++|+++|+++|+
T Consensus       168 f~~~~~~~~~~~~~~~~~~l~~~r~  192 (204)
T 4dmb_A          168 YDSTAGKFNHPEIVQLVSELEAERS  192 (204)
T ss_dssp             HHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999996
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Back     alignment and structure
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Back     alignment and structure
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Back     alignment and structure
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens} Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0 Back     alignment and structure
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} Back     alignment and structure
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 256
d1xx7a_172 a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyr 3e-58
d1ynba1167 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {A 3e-55
d2paqa1186 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escheric 2e-41
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Length = 172 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Oxetanocin-like protein PF0395
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  180 bits (459), Expect = 3e-58
 Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 16/181 (8%)

Query: 81  IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADI-----PGIDRDKCI 135
           ID + L  +LK   R GW+ + V NPES+ADH YR+  + L++A+        ID +K +
Sbjct: 2   IDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKAL 61

Query: 136 KMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEE 195
           K+AI+HD+ EAI+ D+ P        K + E +A+  +           E  EL+ EY +
Sbjct: 62  KIAIIHDLGEAIITDL-PLSAQKYLNKEEAEAKALKDVLP---------EYTELFEEYSK 111

Query: 196 NSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 255
             T E ++VK  DK +MI+QA EYE    K+L EF+ +     + E+ + +  EI+   +
Sbjct: 112 ALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISR-YLREIIEEVR 170

Query: 256 K 256
           +
Sbjct: 171 R 171
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 167 Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Length = 186 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
d1xx7a_172 Oxetanocin-like protein PF0395 {Pyrococcus furiosu 100.0
d1ynba1167 Hypothetical protein AF1432 {Archaeon Archaeoglobu 100.0
d2paqa1186 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562 100.0
d2gz4a1200 Hypothetical protein Atu1052 {Agrobacterium tumefa 98.74
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 98.56
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 98.48
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 98.39
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 98.38
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 98.31
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 98.31
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Oxetanocin-like protein PF0395
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.2e-46  Score=318.56  Aligned_cols=164  Identities=37%  Similarity=0.574  Sum_probs=145.4

Q ss_pred             HHHHHHHhHhccccccCccCCCCCCCCcHHhHHHHHHHHHHHhccCC-----CCCHHHHHHHHHhhhhhhhhhcCCCCCC
Q 025188           81 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIP-----GIDRDKCIKMAIVHDIAEAIVGDITPSD  155 (256)
Q Consensus        81 ~~Fl~~~~~LK~i~R~Gw~~~gi~~~ESVAEHS~rvAliAllLa~~~-----~vD~~Kvv~MALiHDL~Ea~tGDI~~~~  155 (256)
                      ++|+.++++||+++|+||+.+|+++|||||||||+||+||+++++..     ++|++||++|||+||++|++||||+.+.
T Consensus         2 ~~fl~~~~~Lk~~~R~GW~~~gv~~~EsVAeHs~~vA~ia~~la~~~~~~~~~vd~~k~~~maL~HDl~E~~~GDip~~~   81 (172)
T d1xx7a_           2 IDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSA   81 (172)
T ss_dssp             HHHHHHHHHTTTSBCHHHHHHTCSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCHHH
T ss_pred             hHHHHHHHHHcCCcccccccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHhhhHHHHcCCCCccc
Confidence            68999999999999999999999999999999999999999998642     6999999999999999999999996543


Q ss_pred             CCChHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhhc
Q 025188          156 GIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKDLEEFFQSTA  235 (256)
Q Consensus       156 ~v~~~~K~~~E~~A~~~L~~lL~p~~~~~ei~~Lw~EyE~~~T~EAklVK~aDkLe~llQa~ey~~~gn~~l~ef~~~~~  235 (256)
                      + ....|++.|.+++..++    +     ++.++|.|||+++|+||++||++|||++++||++|++.||.++++|+++. 
T Consensus        82 ~-~~~~~~~~e~~~~~~l~----~-----~~~~l~~eye~~~s~Ea~~vk~~DkL~~~lqa~~y~~~g~~~~~ef~~~~-  150 (172)
T d1xx7a_          82 Q-KYLNKEEAEAKALKDVL----P-----EYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNAL-  150 (172)
T ss_dssp             H-TTSCHHHHHHHHHHHHC----G-----GGHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGGGHH-
T ss_pred             h-hhhhHHHHHHHHHHHhc----c-----hhHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH-
Confidence            2 33456677877777652    2     47789999999999999999999999999999999999999999999865 


Q ss_pred             ccccCHHHHHHHHHHHHhhc
Q 025188          236 GKFQTELGKAWAAEIVSRRK  255 (256)
Q Consensus       236 ~~i~t~~~k~~~~~i~~~r~  255 (256)
                      .++.++.++.|+.+|.++|.
T Consensus       151 ~~i~~~~~~~~~~~l~~e~~  170 (172)
T d1xx7a_         151 EDLEKLEISRYLREIIEEVR  170 (172)
T ss_dssp             HHHTTSGGGGGCHHHHHHHH
T ss_pred             HhhchHhHHHHHHHHHHHHH
Confidence            56777888999999999885
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure