Citrus Sinensis ID: 025189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIKSDIAKDKKPY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHcccccEEcccccccEEEEEEEEEEccEEEEEEEccccccccccHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHccEEEEEccccccccccccHHHHHHHccHHHHHHHHHHccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHcccEEEEccccccccccEEEEEEEEccEEEEEEEccccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHHcEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHccccccccEEEEEccccccccccccEEccccccHHHHHHHHHHHHHcccccccEccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgkggvgksstVNSVIGERVVTVnsfqsealrpvmvsrskggftlniidtpglveagyVNYQALELIKGFLLNKTIDVLLYAdrldayrvddLDRQIIKAVTGTFGKQIWRKSLLVLTHaqlcppdglnydvycSKRSDALLKTIRLGaglgkhefedyAVPVALVensgrcsknendekilpngnawIPTLVKGITDvatnksksivvdkklidgsgsddkgkmwipaVIGLQWLILKWIEGAIksdiakdkkpy
Flexible Loop (DISEMBL)
mgkggvgksstvnsvigervvtvnsfqsealrpvMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVtgtfgkqiwRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSknendekilpngnaWIPTLVKGITDvatnksksivvdkklidgsgsddkgkMWIPAVIGLQWLILKWIEGaiksdiakdkkpy
Low Complexity Region (SEG)
MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIKSDIAKDKKPY
Disordered region (IsUnstruct)
**************VIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC*******KILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIK**********
Disordered Region (DISOPRED)
MGKGGVGKSSTVNSVIGERVV****************RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVAT************************WIPAVIGLQWLILKWIEGAI***********
Disordered Region (DISEMBL)
**********TVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIKSDIAKDKKPY
Disordered Region (DISPRO)
*****VGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIKSDIAKDK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIKSDIAKDKKPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
O23680	297	Translocase of chloroplas	yes	no	0.996	0.858	0.705	1e-104
Q41009	310	Translocase of chloroplas	N/A	no	0.992	0.819	0.644	1e-92
Q38906	313	Translocase of chloroplas	no	no	0.996	0.814	0.621	7e-92
Q9LUS2	1089	Translocase of chloroplas	no	no	0.734	0.172	0.343	5e-29
Q9SLF3	1206	Translocase of chloroplas	no	no	0.734	0.155	0.353	4e-28
O81283	1503	Translocase of chloroplas	no	no	0.746	0.127	0.334	2e-26
Q552Z6	449	GTP-binding protein A OS=	yes	no	0.808	0.461	0.308	3e-21
Q6S5G3	793	Translocase of chloroplas	no	no	0.734	0.237	0.328	2e-20
A5PKB7	341	GTPase IMAP family member	yes	no	0.480	0.360	0.316	1e-05
P70224	277	GTPase IMAP family member	yes	no	0.519	0.480	0.266	4e-05

>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/255 (70%), Positives = 215/255 (84%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
            LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDDKGK  IP +IG Q+LI+K 
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYLIVKM 281

Query: 241 IEGAIKSDIAKDKKP 255
           I+GAI++DI    KP
Sbjct: 282 IQGAIRNDIKTSGKP 296

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Binds GTP, GDP, XTP, but not ATP. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast, especially during early development stages.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1

 Score =  339 bits (870), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 165/256 (64%), Positives = 204/256 (79%), Gaps = 2/256 (0%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNS+IGERVV+++ FQSE  RPVMVSRS+ GFTLNIIDTPGL+E GY+N
Sbjct: 45  MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
             AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPDGL YD + SKRS+ALL+ +R GA L K + +   +PV L+ENSGRC+KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLIL-K 239
           +LPNG AWIP LV+ IT+VA NKS+SI VDK LIDG   + +GK+WIP +  LQ+L L K
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAK 283

Query: 240 WIEGAIKSDIAKDKKP 255
            IE  I+ DIA + KP
Sbjct: 284 PIEALIRRDIATETKP 299

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis.

Pisum sativum (taxid: 3888)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2

 Score =  337 bits (863), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 159/256 (62%), Positives = 203/256 (79%), Gaps = 1/256 (0%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNSVIGE+   V++FQSE LRP +VSR++ GFTLNIIDTPGL+E GYVN
Sbjct: 44  MGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVN 103

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
            QA+ +IK FLLN TIDVLLY DRLD YRVDDLDRQ++ A+T  FGK+IW+KS LVLTHA
Sbjct: 104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHA 163

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPDGLNY+ + SKRS+ALLK I+ GA L K + + +++PV LVENSGRC KNE+DEK
Sbjct: 164 QFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEK 223

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQW-LILK 239
           ILP G +WIP L   IT+++ N +K+I VDKKL++G   +++GK  IP +   Q+ L++K
Sbjct: 224 ILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283

Query: 240 WIEGAIKSDIAKDKKP 255
            +  AIKSD++++ KP
Sbjct: 284 PLVRAIKSDVSRESKP 299

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 13/201 (6%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA---G 57
           +GK GVGKS+T+NS+  E  ++ ++FQ    +   +     G  + +IDTPGL+ +    
Sbjct: 462 LGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQ 521

Query: 58  YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
           + N + L+ ++ F+     D++LY DRLD    D  D  +++ +T  FG  IW  +++ L
Sbjct: 522 HKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGL 581

Query: 118 THAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
           THA   PPDG N     YD++ ++RS  + + IR  AG  +        PV+LVEN   C
Sbjct: 582 THAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSAC 636

Query: 173 SKNENDEKILPNGNAWIPTLV 193
             N   +++LPNG  W P L+
Sbjct: 637 RTNRAGQRVLPNGQVWKPHLL 657

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 13/201 (6%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA---G 57
           +GK GVGKS+T+NS+  E     ++FQ    R   V     G  + +IDTPGL+ +    
Sbjct: 580 LGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQ 639

Query: 58  YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
             N + L  +K F+     D++LY DRLD    D  D  +++ ++  FG  IW  +++ L
Sbjct: 640 AKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGL 699

Query: 118 THAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
           THA   PPDG N     YD++ ++RS  + + IR  AG  +        PV+LVEN   C
Sbjct: 700 THAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSAC 754

Query: 173 SKNENDEKILPNGNAWIPTLV 193
             N   +++LPNG  W P L+
Sbjct: 755 RTNRAGQRVLPNGQVWKPHLL 775

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 12/203 (5%)

Query: 1    MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-- 58
            +GK GVGKS+T+NS++G ++ ++++F         +S +  G  +  IDTPGL  A    
Sbjct: 861  LGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQ 920

Query: 59   -VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
              N + L  +K  +     D++LY DRLD    D  +  +++ +T + G  IW+ +++ L
Sbjct: 921  STNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTL 980

Query: 118  THAQLCPPDG-----LNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAV--PVALVENSG 170
            THA   PPDG     L+YDV+ ++ S  + ++I  G  +G     + ++  PV+LVEN  
Sbjct: 981  THAASAPPDGPSGTPLSYDVFVAQCSHIVQQSI--GQAVGDLRLMNPSLMNPVSLVENHP 1038

Query: 171  RCSKNENDEKILPNGNAWIPTLV 193
             C KN    K+LPNG  W   L+
Sbjct: 1039 LCRKNREGVKVLPNGQTWRSQLL 1061

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Required for chloroplast biogenesis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 17/224 (7%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--Y 58
           +G+ GVGKSST+N+V G  +  V+S +S    P   SR   GF LNIIDTPG +++    
Sbjct: 157 LGRTGVGKSSTLNTVFGIDI-PVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGEL 215

Query: 59  VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 118
           V+   +  I+ +L  KTI  +L+ ++    R D   + +I   T   G Q+WR + +VLT
Sbjct: 216 VDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLT 275

Query: 119 HAQLCPPDGLNYDVYCS--------KRSDALLKTIR-----LGAGLGKHEFEDYAVPVAL 165
           +A    PD   YD +          K  +A     R     + A L + ++    +PV  
Sbjct: 276 YANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDDYPPKHIPVYA 334

Query: 166 VENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVV 209
           +ENS RC +NE  +++L +G   +  L+ G+  +   K+  + +
Sbjct: 335 MENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMVDPKTAFLFM 378

Dictyostelium discoideum (taxid: 44689)

>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 13/201 (6%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL----VEA 56
           +GK GVGKS+T+NS+ G+     ++F+    R   V  +  G  +  IDTPG       +
Sbjct: 172 LGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSS 231

Query: 57  GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 116
              N + L  IK ++  +  DV+LY DRLD   +   D  +++ +T  FG  IW  ++LV
Sbjct: 232 TRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILV 291

Query: 117 LTHAQLCPP----DGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
           +TH+           +NY+ Y  +R D +   I       K E      PV LVEN   C
Sbjct: 292 MTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLVENHPSC 346

Query: 173 SKNENDEKILPNGNAWIPTLV 193
            KN   E +LPNG  W P  +
Sbjct: 347 KKNLAGEYVLPNGVVWKPQFM 367

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 19/142 (13%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG-----GFTLNIIDTPGLV 54
           +GK G GKS+T NS++G RV     F+S+ + RPV  +  +G     G  L +IDTP ++
Sbjct: 99  VGKSGSGKSATGNSILGRRV-----FESKLSARPVTQAFQQGCRAWEGRELQVIDTPDIL 153

Query: 55  E---AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 111
               AG+   Q +       L K   VLL        R  + D+Q+   +   FGK I  
Sbjct: 154 SPWAAGWATAQGVGEAGTGSLPKQYAVLLVT---QLGRFTEEDQQVAGRLEEVFGKGILA 210

Query: 112 KSLLVLTHAQLCPPDGLNYDVY 133
           +++LV T  +    DG + + Y
Sbjct: 211 RTILVFTRKEDL--DGRSLETY 230

Bos taurus (taxid: 9913)

>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKGGFTLNIIDTPGLV--EAG 57
           +G+ G GKS+T NS++G++            R   + SR   G+ + ++DTP +   E  
Sbjct: 9   VGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDIFSSEIP 68

Query: 58  YVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 116
             +   +E  + F+L+      LL   +L  + + D   Q + AV   FGKQ+  ++++V
Sbjct: 69  RTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQD--SQALAAVKRLFGKQVMARTVVV 126

Query: 117 LTHAQLCPPDGLNYDVYCS 135
            T  +    D L   V+C+
Sbjct: 127 FTRQEDLAGDSLQDYVHCT 145

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
224130760	297	predicted protein [Populus trichocarpa]	0.992	0.855	0.740	1e-108
224068264	297	predicted protein [Populus trichocarpa]	0.992	0.855	0.720	1e-105
118489141	297	unknown [Populus trichocarpa x Populus d	0.992	0.855	0.716	1e-105
255548149	297	aig1, putative [Ricinus communis] gi|223	0.980	0.845	0.733	1e-105
297848432	297	hypothetical protein ARALYDRAFT_311338 [	0.996	0.858	0.713	1e-104
15217705	297	translocase of chloroplast 33 [Arabidops	0.996	0.858	0.705	1e-102
14596163	297	similar to GTP-binding protein [Arabidop	0.996	0.858	0.701	1e-102
21780153	297	toc33 protein [Orychophragmus violaceus]	0.996	0.858	0.682	1e-101
21780151	297	toc33-like protein [Orychophragmus viola	0.996	0.858	0.678	1e-100
147833616	310	hypothetical protein VITISV_028305 [Viti	0.992	0.819	0.686	8e-99

>gi|224130760|ref|XP_002320920.1| predicted protein [Populus trichocarpa] gi|222861693|gb|EEE99235.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/254 (74%), Positives = 223/254 (87%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNS++GERVV V+SFQSE  RPVMVSR + GFTLNIIDTPGLVE GYVN
Sbjct: 42  MGKGGVGKSSTVNSLLGERVVNVSSFQSEGFRPVMVSRDRAGFTLNIIDTPGLVEGGYVN 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           YQALELIK FLLNKTI+VLLY DRLDAYRVDDLD+QII A+T +FGK+IW KSLLVLTHA
Sbjct: 102 YQALELIKRFLLNKTINVLLYVDRLDAYRVDDLDKQIISAITDSFGKEIWNKSLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           QLCPPD L+YDV+C +RS+A+LKTIR+GA + K +FED AVPV LVENSGRC+KNENDEK
Sbjct: 162 QLCPPDDLSYDVFCGRRSEAVLKTIRMGAQIRKRDFEDSAVPVGLVENSGRCNKNENDEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
           ILPNG+AWIP+LVK I  VATN  KS++VD+KL++GS S+D+GK++IP ++G+QWL++KW
Sbjct: 222 ILPNGDAWIPSLVKEIVGVATNGKKSLLVDEKLVNGSESNDRGKIFIPLILGVQWLLVKW 281

Query: 241 IEGAIKSDIAKDKK 254
           I+  IK DI K  K
Sbjct: 282 IQREIKKDIVKGGK 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068264|ref|XP_002302691.1| predicted protein [Populus trichocarpa] gi|222844417|gb|EEE81964.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/254 (72%), Positives = 223/254 (87%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNS+ GER V V+SFQSE  RPVMVSR++ GFTLNIIDTPGLVE GYV+
Sbjct: 42  MGKGGVGKSSTVNSLFGERAVNVSSFQSEGFRPVMVSRNRAGFTLNIIDTPGLVEGGYVS 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           YQAL++IK FLLNKTI VLLY DRLDAYRVDDLD+QII A++ +FGK+IW KSLLVLTHA
Sbjct: 102 YQALDMIKRFLLNKTIHVLLYVDRLDAYRVDDLDKQIIGAISDSFGKEIWSKSLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           QLCPPD L+YDV+C++RS+A+LKTIR+GA + K +FED A+PV LVENSGRC+KNENDEK
Sbjct: 162 QLCPPDDLSYDVFCARRSEAVLKTIRMGARIRKRDFEDSAIPVGLVENSGRCNKNENDEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
           ILPNG+AWIP+LVK I  VATN  K++VVD+KL++GS S+D+GK++IP ++G+QWL++KW
Sbjct: 222 ILPNGDAWIPSLVKEIILVATNGKKALVVDEKLVNGSESNDRGKIFIPLILGIQWLLVKW 281

Query: 241 IEGAIKSDIAKDKK 254
           I+  IK DIAK  K
Sbjct: 282 IQREIKKDIAKGGK 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489141|gb|ABK96377.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/254 (71%), Positives = 223/254 (87%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNS+ GER V V+SFQSE  RPVMVSR++ GFTLNIIDTPGLVE GYV+
Sbjct: 42  MGKGGVGKSSTVNSLFGERAVNVSSFQSEGFRPVMVSRNRAGFTLNIIDTPGLVEGGYVS 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           YQAL++IK FLLNKTI VLLY DRLDAYRVDDLD+QII A++ +FGK+IW KSLLVLTHA
Sbjct: 102 YQALDMIKRFLLNKTIHVLLYVDRLDAYRVDDLDKQIIGAISDSFGKEIWSKSLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           QLCPPD L+YDV+C++RS+A+LKTIR+GA + K +FED A+PV LVENSGRC+KNENDEK
Sbjct: 162 QLCPPDDLSYDVFCARRSEAVLKTIRMGARIRKRDFEDSAIPVGLVENSGRCNKNENDEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
           ILP+G+AWIP+LVK I  VATN  K++VVD+KL++GS S+D+GK++IP ++G+QWL++KW
Sbjct: 222 ILPSGDAWIPSLVKEIILVATNGKKALVVDEKLVNGSESNDRGKIFIPLILGIQWLLVKW 281

Query: 241 IEGAIKSDIAKDKK 254
           I+  IK DIAK  K
Sbjct: 282 IQREIKKDIAKGGK 295

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548149|ref|XP_002515131.1| aig1, putative [Ricinus communis] gi|223545611|gb|EEF47115.1| aig1, putative [Ricinus communis]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/251 (73%), Positives = 218/251 (86%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGERVV VNSF +E  RPVMVSR++ GFTLNIIDTPGLVE GYV+
Sbjct: 42  LGKGGVGKSSTVNSLIGERVVNVNSFSAEVSRPVMVSRNRAGFTLNIIDTPGLVEGGYVS 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           YQALELIK FLLNKTIDVLLY DRLDAYRVDDLD+QI+ A++ +FGK+IWRKSLLVLTHA
Sbjct: 102 YQALELIKRFLLNKTIDVLLYVDRLDAYRVDDLDKQIVTAISDSFGKEIWRKSLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           QLCPPD L YD + ++RS+++LKTIR G+ + K +FED A+PV LVENSGRC KNE DEK
Sbjct: 162 QLCPPDDLIYDDFSARRSESVLKTIRAGSRMRKRDFEDSAIPVGLVENSGRCKKNETDEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
           ILPNG AWIP+LVK I  VATN +KSI VDKKLIDGS S+D+GK+ IP ++G+QWL++KW
Sbjct: 222 ILPNGTAWIPSLVKEIIGVATNGNKSITVDKKLIDGSESNDRGKVLIPVILGVQWLLVKW 281

Query: 241 IEGAIKSDIAK 251
           I+ AIK DIA+
Sbjct: 282 IQSAIKDDIAR 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848432|ref|XP_002892097.1| hypothetical protein ARALYDRAFT_311338 [Arabidopsis lyrata subsp. lyrata] gi|297337939|gb|EFH68356.1| hypothetical protein ARALYDRAFT_311338 [Arabidopsis lyrata subsp. lyrata]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/255 (71%), Positives = 217/255 (85%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+NKTIDVLLY DRLD YRVD+LD+Q++KA+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNKTIDVLLYVDRLDVYRVDELDKQVVKAITQTFGKEIWFKTLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
            LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDDKGK  IP +IG+Q+LI+K 
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGVQYLIVKM 281

Query: 241 IEGAIKSDIAKDKKP 255
           I+GAI++DI    KP
Sbjct: 282 IQGAIRNDIKTSGKP 296

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217705|ref|NP_171730.1| translocase of chloroplast 33 [Arabidopsis thaliana] gi|186478055|ref|NP_001117215.1| translocase of chloroplast 33 [Arabidopsis thaliana] gi|75097959|sp|O23680.1|TOC33_ARATH RecName: Full=Translocase of chloroplast 33, chloroplastic; Short=AtToc33; AltName: Full=33 kDa chloroplast outer envelope protein; AltName: Full=Plastid protein import 1 gi|2317911|gb|AAC24375.1| similar to GTP-binding protein [Arabidopsis thaliana] gi|11557973|emb|CAC17698.1| atToc33 protein [Arabidopsis thaliana] gi|15912341|gb|AAL08304.1| At1g02280/T7I23.11 [Arabidopsis thaliana] gi|105830154|gb|ABF74715.1| At1g02280 [Arabidopsis thaliana] gi|332189288|gb|AEE27409.1| translocase of chloroplast 33 [Arabidopsis thaliana] gi|332189289|gb|AEE27410.1| translocase of chloroplast 33 [Arabidopsis thaliana]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/255 (70%), Positives = 215/255 (84%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
            LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDDKGK  IP +IG Q+LI+K 
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYLIVKM 281

Query: 241 IEGAIKSDIAKDKKP 255
           I+GAI++DI    KP
Sbjct: 282 IQGAIRNDIKTSGKP 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14596163|gb|AAK68809.1| similar to GTP-binding protein [Arabidopsis thaliana]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/255 (70%), Positives = 214/255 (83%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TF K+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFAKEIWCKTLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
            LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDDKGK  IP +IG Q+LI+K 
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYLIVKM 281

Query: 241 IEGAIKSDIAKDKKP 255
           I+GAI++DI    KP
Sbjct: 282 IQGAIRNDIKTSGKP 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21780153|gb|AAM77648.1| toc33 protein [Orychophragmus violaceus]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/255 (68%), Positives = 212/255 (83%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSST NS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTANSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDV LY DRLD YRVD+LD+Q+++A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVFLYVDRLDVYRVDELDKQVVQAITQTFGKEIWCKTLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD+L KTIR G+ + K +FED A+ V   ENSGRCSKNE +EK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLFKTIRAGSKMRKQQFEDSAIEVVYAENSGRCSKNEKEEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
            LPNG AWIP+LVK IT VATN+ K+I VDKK++DGS SDD+GK  IP +IG QW I+K 
Sbjct: 222 ALPNGEAWIPSLVKAITYVATNQRKAIHVDKKMVDGSYSDDRGKKLIPLIIGAQWFIVKM 281

Query: 241 IEGAIKSDIAKDKKP 255
           I+GAI++DI    KP
Sbjct: 282 IQGAIRNDIKTSGKP 296

Source: Orychophragmus violaceus

Species: Orychophragmus violaceus

Genus: Orychophragmus

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21780151|gb|AAM77647.1| toc33-like protein [Orychophragmus violaceus]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/255 (67%), Positives = 211/255 (82%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSST NS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTANSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDVLLY DRLD YRVD+LDRQ+++A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDRQVVQAITQTFGKEIWCKTLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y  + SKRSD+ LKTIR G+ + K +FED A+ V   ENSGRCSKNE +EK
Sbjct: 162 QFSPPDELSYGTFSSKRSDSFLKTIRTGSKMRKQQFEDSAIEVVYAENSGRCSKNEKEEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
            LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDD+GK  IP ++  Q+ I++ 
Sbjct: 222 ALPNGEAWIPGLVKAITDVATNQRKAIHVDKKMVDGSYSDDRGKKLIPLIMAAQYFIVEM 281

Query: 241 IEGAIKSDIAKDKKP 255
           I+GAI++DI    KP
Sbjct: 282 IQGAIRNDIKTSGKP 296

Source: Orychophragmus violaceus

Species: Orychophragmus violaceus

Genus: Orychophragmus

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833616|emb|CAN63847.1| hypothetical protein VITISV_028305 [Vitis vinifera]

 Score =  365 bits (938), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 175/255 (68%), Positives = 213/255 (83%), Gaps = 1/255 (0%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNS+IGER V V++FQSE  RPVMVSRS+ GFTLNIIDTPGLVE GYVN
Sbjct: 43  MGKGGVGKSSTVNSIIGERAVAVSAFQSEGPRPVMVSRSRAGFTLNIIDTPGLVEGGYVN 102

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
            QALE+IK FLLNKTIDVLLY DRLDAYRVD+LDRQ++KA+T +FGK+IWR+ ++VLTHA
Sbjct: 103 DQALEIIKRFLLNKTIDVLLYVDRLDAYRVDNLDRQVVKAITDSFGKEIWRRGVVVLTHA 162

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           QL PPDGLNY+ + SKRS+AL+K +R GA L K + +D  +PV LVENSGRC KNE+DEK
Sbjct: 163 QLSPPDGLNYEDFFSKRSEALMKVVRSGARLRKQDIQDSGIPVVLVENSGRCHKNESDEK 222

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQW-LILK 239
           ILPNG AWIP LVK ITD  +N SK I+VDKKLI+G   +++GK+ IP ++  Q+  I+K
Sbjct: 223 ILPNGTAWIPNLVKTITDAVSNGSKGILVDKKLIEGPNPNERGKLLIPFILAFQYFFIVK 282

Query: 240 WIEGAIKSDIAKDKK 254
            I+ AIKSD+AK++K
Sbjct: 283 RIQRAIKSDMAKERK 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2204923	297	TOC33 "translocon at the outer	0.996	0.858	0.705	8.7e-95
UNIPROTKB|Q41009	310	TOC34 "Translocase of chloropl	0.992	0.819	0.644	1.8e-85
TAIR|locus:2175259	313	TOC34 "translocon at the outer	0.996	0.814	0.621	4.4e-84
TAIR|locus:2089348	1089	TOC120 "translocon outer compl	0.734	0.172	0.343	7.8e-27
TAIR|locus:2059929	1206	TOC132 "multimeric translocon	0.734	0.155	0.353	8.4e-26
TAIR|locus:2132298	1503	TOC159 "translocon at the oute	0.726	0.123	0.338	1.2e-25
DICTYBASE|DDB_G0275441	449	gtpA "GTP-binding protein, HSR	0.789	0.449	0.333	2.2e-21
TAIR|locus:2149204	793	Toc90 "translocon at the outer	0.722	0.233	0.333	1.1e-19
ZFIN|ZDB-GENE-051113-204	301	zgc:122993 "zgc:122993" [Danio	0.507	0.431	0.251	2.1e-06
UNIPROTKB|E1BTV5	197	Gga.30379 "Uncharacterized pro	0.457	0.593	0.285	7.3e-06

TAIR|locus:2204923 TOC33 "translocon at the outer envelope membrane of chloroplasts 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 180/255 (70%), Positives = 215/255 (84%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
             +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct:    42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query:    61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
             +QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct:   102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161

Query:   121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
             Q  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct:   162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221

Query:   181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKW 240
              LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDDKGK  IP +IG Q+LI+K 
Sbjct:   222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYLIVKM 281

Query:   241 IEGAIKSDIAKDKKP 255
             I+GAI++DI    KP
Sbjct:   282 IQGAIRNDIKTSGKP 296

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009707 "chloroplast outer membrane" evidence=IEA;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=TAS

UNIPROTKB|Q41009 TOC34 "Translocase of chloroplast 34" [Pisum sativum (taxid:3888)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 165/256 (64%), Positives = 204/256 (79%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
             MGKGGVGKSSTVNS+IGERVV+++ FQSE  RPVMVSRS+ GFTLNIIDTPGL+E GY+N
Sbjct:    45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104

Query:    61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
               AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHA
Sbjct:   105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164

Query:   121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
             Q  PPDGL YD + SKRS+ALL+ +R GA L K + +   +PV L+ENSGRC+KN++DEK
Sbjct:   165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223

Query:   181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLIL-K 239
             +LPNG AWIP LV+ IT+VA NKS+SI VDK LIDG   + +GK+WIP +  LQ+L L K
Sbjct:   224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAK 283

Query:   240 WIEGAIKSDIAKDKKP 255
              IE  I+ DIA + KP
Sbjct:   284 PIEALIRRDIATETKP 299

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2175259 TOC34 "translocon at the outer envelope membrane of chloroplasts 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 159/256 (62%), Positives = 203/256 (79%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
             MGKGGVGKSSTVNSVIGE+   V++FQSE LRP +VSR++ GFTLNIIDTPGL+E GYVN
Sbjct:    44 MGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVN 103

Query:    61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
              QA+ +IK FLLN TIDVLLY DRLD YRVDDLDRQ++ A+T  FGK+IW+KS LVLTHA
Sbjct:   104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHA 163

Query:   121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
             Q  PPDGLNY+ + SKRS+ALLK I+ GA L K + + +++PV LVENSGRC KNE+DEK
Sbjct:   164 QFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEK 223

Query:   181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWL-ILK 239
             ILP G +WIP L   IT+++ N +K+I VDKKL++G   +++GK  IP +   Q+L ++K
Sbjct:   224 ILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283

Query:   240 WIEGAIKSDIAKDKKP 255
              +  AIKSD++++ KP
Sbjct:   284 PLVRAIKSDVSRESKP 299

GO:0005525 "GTP binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0009707 "chloroplast outer membrane" evidence=IDA;TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=TAS

GO:0045036 "protein targeting to chloroplast" evidence=RCA;TAS

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009536 "plastid" evidence=IDA

GO:0019750 "chloroplast localization" evidence=TAS

TAIR|locus:2089348 TOC120 "translocon outer complex protein 120" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 7.8e-27, P = 7.8e-27
 Identities = 69/201 (34%), Positives = 110/201 (54%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--- 57
             +GK GVGKS+T+NS+  E  ++ ++FQ    +   +     G  + +IDTPGL+ +    
Sbjct:   462 LGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQ 521

Query:    58 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
             + N + L+ ++ F+     D++LY DRLD    D  D  +++ +T  FG  IW  +++ L
Sbjct:   522 HKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGL 581

Query:   118 THAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
             THA   PPDG N     YD++ ++RS  + + IR  AG  +        PV+LVEN   C
Sbjct:   582 THAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSAC 636

Query:   173 SKNENDEKILPNGNAWIPTLV 193
               N   +++LPNG  W P L+
Sbjct:   637 RTNRAGQRVLPNGQVWKPHLL 657

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS;IDA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA;IDA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2059929 TOC132 "multimeric translocon complex in the outer envelope membrane 132" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 71/201 (35%), Positives = 106/201 (52%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-- 58
             +GK GVGKS+T+NS+  E     ++FQ    R   V     G  + +IDTPGL+ +    
Sbjct:   580 LGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQ 639

Query:    59 -VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
               N + L  +K F+     D++LY DRLD    D  D  +++ ++  FG  IW  +++ L
Sbjct:   640 AKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGL 699

Query:   118 THAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
             THA   PPDG N     YD++ ++RS  + + IR  AG  +        PV+LVEN   C
Sbjct:   700 THAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMR-----LMNPVSLVENHSAC 754

Query:   173 SKNENDEKILPNGNAWIPTLV 193
               N   +++LPNG  W P L+
Sbjct:   755 RTNRAGQRVLPNGQVWKPHLL 775

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS;IDA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2132298 TOC159 "translocon at the outer envelope membrane of chloroplasts 159" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 67/198 (33%), Positives = 109/198 (55%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-- 58
             +GK GVGKS+T+NS++G ++ ++++F         +S +  G  +  IDTPGL  A    
Sbjct:   861 LGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQ 920

Query:    59 -VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
               N + L  +K  +     D++LY DRLD    D  +  +++ +T + G  IW+ +++ L
Sbjct:   921 STNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTL 980

Query:   118 THAQLCPPDG-----LNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAV--PVALVENSG 170
             THA   PPDG     L+YDV+ ++ S  + ++I  G  +G     + ++  PV+LVEN  
Sbjct:   981 THAASAPPDGPSGTPLSYDVFVAQCSHIVQQSI--GQAVGDLRLMNPSLMNPVSLVENHP 1038

Query:   171 RCSKNENDEKILPNGNAW 188
              C KN    K+LPNG  W
Sbjct:  1039 LCRKNREGVKVLPNGQTW 1056

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=RCA;IMP;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0009536 "plastid" evidence=IDA

DICTYBASE|DDB_G0275441 gtpA "GTP-binding protein, HSR1-related domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 255 (94.8 bits), Expect = 2.2e-21, P = 2.2e-21
 Identities = 73/219 (33%), Positives = 115/219 (52%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA-G-Y 58
             +G+ GVGKSST+N+V G  +  V+S +S    P   SR   GF LNIIDTPG +++ G  
Sbjct:   157 LGRTGVGKSSTLNTVFGIDI-PVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGEL 215

Query:    59 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 118
             V+   +  I+ +L  KTI  +L+ ++    R D   + +I   T   G Q+WR + +VLT
Sbjct:   216 VDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLT 275

Query:   119 HAQLCPPDGLNYDVY--------CSKRSDA-LLKTIRLGAG-LGKHEFEDYA---VPVAL 165
             +A    PD   YD +          K  +A  L+  +  AG L +   +DY    +PV  
Sbjct:   276 YANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDDYPPKHIPVYA 334

Query:   166 VENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKS 204
             +ENS RC +NE  +++L +G   +  L+ G+  +   K+
Sbjct:   335 MENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMVDPKT 373

GO:0005525 "GTP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2149204 Toc90 "translocon at the outer envelope membrane of chloroplasts 90" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 66/198 (33%), Positives = 101/198 (51%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL--VEAGY 58
             +GK GVGKS+T+NS+ G+     ++F+    R   V  +  G  +  IDTPG   + +  
Sbjct:   172 LGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSS 231

Query:    59 V--NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 116
                N + L  IK ++  +  DV+LY DRLD   +   D  +++ +T  FG  IW  ++LV
Sbjct:   232 TRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILV 291

Query:   117 LTHAQLCPP--DG--LNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
             +TH+       +G  +NY+ Y  +R D +   I     +   + E+   PV LVEN   C
Sbjct:   292 MTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIH--QAVSDTKLEN---PVLLVENHPSC 346

Query:   173 SKNENDEKILPNGNAWIP 190
              KN   E +LPNG  W P
Sbjct:   347 KKNLAGEYVLPNGVVWKP 364

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=IMP

ZFIN|ZDB-GENE-051113-204 zgc:122993 "zgc:122993" [Danio rerio (taxid:7955)]

 Score = 132 (51.5 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 34/135 (25%), Positives = 64/135 (47%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYV 59
             +GK GVGKSS+ N+++GE         S       + +S   G ++++IDTPG       
Sbjct:    60 LGKTGVGKSSSGNTILGENRFACKKSLSAVTNTSSIEKSVTNGRSVSVIDTPGFFCTKLS 119

Query:    60 NYQ-ALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
               Q A E  +   L+ + +   L+    D  R  + + +I+  V   FGK++ +  +++ 
Sbjct:   120 KEQLAFEFARSVYLSASGVHAFLFVVPFD--RFTEQEEEILNKVEQVFGKKVLKHVIILF 177

Query:   118 THAQLCPPDGLNYDV 132
             TH   C  + +  ++
Sbjct:   178 THGDECDRENIQKEI 192

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BTV5 Gga.30379 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 122 (48.0 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 36/126 (28%), Positives = 69/126 (54%)

Query:     1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF---TLNIIDTPGLVEAG 57
             +GK G GKS+T N+++G  V    S  S++      S+++G F   T+ ++DTPGL +  
Sbjct:    16 VGKTGSGKSATGNTILGMEVF--ESKLSDSSVTSDYSKAEGSFYGRTIEVVDTPGLFDTR 73

Query:    58 YVNYQALELIKGFL--LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL 115
               N +  E IK  L  L+  +  +++  +L   R+   ++++++ VT  F  +  R ++L
Sbjct:    74 EGNLKTAEKIKNGLRYLSTGVHAIVFVMQLG--RITKEEQEVVEWVTKIFHIEAQRYTVL 131

Query:   116 VLTHAQ 121
             + T A+
Sbjct:   132 LFTRAE 137

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23680	TOC33_ARATH	3, ., 6, ., 5, ., -	0.7058	0.9960	0.8585	yes	no
Q41009	TOC34_PEA	3, ., 6, ., 5, ., -	0.6445	0.9921	0.8193	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.5	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIV0229 hypothetical protein (298 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	1e-139
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	1e-105
pfam04548	211	pfam04548, AIG1, AIG1 family	3e-37
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	7e-37
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	2e-10
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-09
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	4e-05
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	8e-05
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	2e-04
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	3e-04
cd00880	161	cd00880, Era_like, E	3e-04
TIGR00157	245	TIGR00157, TIGR00157, ribosome small subunit-depen	0.001
cd11383	140	cd11383, YfjP, YfjP GTPase	0.001

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score =  393 bits (1010), Expect = e-139
 Identities = 169/256 (66%), Positives = 210/256 (82%), Gaps = 1/256 (0%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNS+IGER+ TV++FQSE LRP+MVSR++ GFTLNIIDTPGL+E GY+N
Sbjct: 44  MGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN 103

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
            QA+ +IK FLL KTIDVLLY DRLDAYRVD LD Q+I+A+T +FGK IWRKSL+VLTHA
Sbjct: 104 DQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHA 163

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPDGL Y+ + SKRS+ALL+ I  GAGL K +++D+ +PVALVENSGRC KNE+DEK
Sbjct: 164 QFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEK 223

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLIL-K 239
           ILP+G  WIP L+K IT+V +N SK I VDKKLIDG   +++GKM+IP +  +Q+L++ K
Sbjct: 224 ILPDGTPWIPKLMKEITEVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVK 283

Query: 240 WIEGAIKSDIAKDKKP 255
            I  AI +DIA +KK 
Sbjct: 284 PIRRAIHADIANEKKD 299

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score =  303 bits (779), Expect = e-105
 Identities = 110/212 (51%), Positives = 138/212 (65%), Gaps = 2/212 (0%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA--GY 58
           +GK GVGKSST+NS+ GER V+V++FQSE LRP  VSR+  GF LNIIDTPGL+E+    
Sbjct: 37  LGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTVDGFKLNIIDTPGLLESQDQR 96

Query: 59  VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 118
           VN + L +IK FL  KTIDV+LY DRLD YRVD+LD  +++A+T +FG  IWR +++VLT
Sbjct: 97  VNRKILSIIKRFLKKKTIDVVLYVDRLDMYRVDNLDVPLLRAITDSFGPSIWRNAIVVLT 156

Query: 119 HAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNEND 178
           HAQ  PPDG N   +   R  A  K I   A        D   PV LVENS RC KN   
Sbjct: 157 HAQSSPPDGPNGTPFSYDRFVAQRKHIVQQAIQQAAGDPDLENPVVLVENSPRCKKNRQG 216

Query: 179 EKILPNGNAWIPTLVKGITDVATNKSKSIVVD 210
           EK+LPNG  W+P L+   T V      +I++D
Sbjct: 217 EKVLPNGTVWLPQLLLLCTSVKLLSEANILLD 248

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  130 bits (328), Expect = 3e-37
 Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 32/213 (15%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEA------LRPVMVSRSKGGFTLNIIDTPGLV 54
           +GK G GKS+T NS++G +      F+S+           +VSR+  G  +N+IDTPGL 
Sbjct: 6   VGKTGNGKSATGNSILGRKA-----FESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLF 60

Query: 55  EAGYVN-YQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK 112
           +    N + + E+I+  LL +     +L    L   R  + + Q ++ +   FG +I   
Sbjct: 61  DLSVSNDFISKEIIRCLLLAEPGPHAVLLV--LSLGRFTEEEEQALRTLQELFGSKILDY 118

Query: 113 SLLVLTHAQLCPPDGLNYDVYCSKRS-DALLKTIRLGAGL--------GKHEFEDYA--- 160
            ++V T       D L  D Y S    + L + +R   G            E E+     
Sbjct: 119 MIVVFTRKDDLEDDSL--DDYLSDGCPEFLKEVLRECGGRYVLFNNKADGEEKEEQVQQL 176

Query: 161 ---VPVALVENSGRCSKNENDEKILPNGNAWIP 190
              V   + EN G+   N+  EKI   G     
Sbjct: 177 LALVEAIVKENGGKPYTNDLYEKIKEEGERLRE 209

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score =  137 bits (346), Expect = 7e-37
 Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 8/201 (3%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-- 58
           +GK GVGKS+T+NS+ GE   + ++F         +     G  + +IDTPGL  +    
Sbjct: 124 LGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQ 183

Query: 59  -VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
             N + L  +K F+     D++LY DRLD    D  D  +++ +T   G  IW  +++ L
Sbjct: 184 SKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL 243

Query: 118 THAQLCPPDG-----LNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRC 172
           THA   PPDG     L+YDV+ ++RS  + + I    G  +    +   PV+LVEN   C
Sbjct: 244 THAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDLRLMNPNLMNPVSLVENHPAC 303

Query: 173 SKNENDEKILPNGNAWIPTLV 193
            KN   +K+LPNG  W P L+
Sbjct: 304 RKNRAGQKVLPNGQVWKPHLL 324

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 17/129 (13%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV-------SRSKGGFTLNIIDTPGL 53
           +GK G GKS+T N+++G +V     F+S+ L    V       S    G  +N+IDTPGL
Sbjct: 6   VGKTGNGKSATGNTILGRKV-----FESK-LSASGVTKTCQKESAVWDGRRVNVIDTPGL 59

Query: 54  VEAGYVNYQ-ALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 111
            +      Q + E+I+   L+       L    L  +  +  + Q ++ +   FG+++  
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLGRFTEE--EEQAVEELQELFGEKVLD 117

Query: 112 KSLLVLTHA 120
            ++++ T  
Sbjct: 118 HTIVLFTRG 126

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGY 58
           +G+GGVGKSS +N+++G  V  V+        P +  +   KG   L ++DTPGL E G 
Sbjct: 3   VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGG 62

Query: 59  VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 118
                 EL +  L  +  D++L          ++  + +I       G  I    +LV  
Sbjct: 63  --LGREELARLLL--RGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPI----ILVGN 114

Query: 119 HAQLCPPD 126
              L    
Sbjct: 115 KIDLLEER 122

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +G+  VGKS+ +N++ G +V  V+ +      P+ +     G  + ++DTPGL+E G   
Sbjct: 5   VGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPI-LGVLGLGRQIILVDTPGLIE-GASE 62

Query: 61  YQALELIKGFLLN-KTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIW 110
            + +E    FL   +  D++L    +DA   + + D +I++ +     K I 
Sbjct: 63  GKGVEGFNRFLEAIREADLILLV--VDASEGLTEDDEEILEELEKLPKKPII 112

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MG  G GKSS +N++    V  V+           +  S  G  L + DTPGL +    +
Sbjct: 45  MGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD 104

Query: 61  YQALELIKGFLLNKTIDVLLYADRLD-AYRVD-DLDRQIIKAVTGTFGKQIWRKSLLVLT 118
            +  +L +   L K   VL      D A   D D  R +I          + ++ L V+T
Sbjct: 105 AEHRQLYRD-YLPKLDLVLWLIKADDRALGTDEDFLRDVI-------ILGLDKRVLFVVT 156

Query: 119 HA 120
            A
Sbjct: 157 QA 158

Length = 296

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALR--------PVMVSRSKGGFTLNIIDTPG 52
           +G+ GVGKS+ +N+++ E         SE L           +     GG+   IIDTPG
Sbjct: 170 LGQSGVGKSTLINALLPELNQKTGEI-SEKLGRGRHTTTHVELFPLPGGGW---IIDTPG 225

Query: 53  LVEAGYVNYQALELIKGF 70
               G  + +  +L++ F
Sbjct: 226 FRSLGLAHLEPEDLVQAF 243

Length = 301

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 12/78 (15%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL--------RPVMVSRSKGGFTLNIIDTPG 52
            G+ GVGKS+ +N+++ E  +      SE L           +     GG    +IDTPG
Sbjct: 41  AGQSGVGKSTLLNALLPELDLRTGEI-SEKLGRGRHTTTHVELFPLPGGGL---LIDTPG 96

Query: 53  LVEAGYVNYQALELIKGF 70
             E G  +    EL + F
Sbjct: 97  FRELGLWHLDPEELAEYF 114

Length = 161

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 10/126 (7%)

Query: 2   GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS-RSKGGFTLNIIDTPGLVEAGYVN 60
           G+  VGKSS +N+++G+ V  V+        PV           + +IDTPGL E G   
Sbjct: 4   GRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEG--G 61

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
                + +   +    D++L     D   V++  +  +    G       +  LLVL   
Sbjct: 62  LGRERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGLLRERG-------KPVLLVLNKI 114

Query: 121 QLCPPD 126
            L P  
Sbjct: 115 DLVPES 120

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 1   MGKGGVGKSSTVNSVIGE------RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV 54
            G+ GVGKSS +N++          + +           V +    GG    I DTPG  
Sbjct: 126 AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGGL---IADTPGFN 182

Query: 55  EAGYVNYQALELIKGF 70
           E G  + +  +L +GF
Sbjct: 183 EFGLWHLEPEQLTQGF 198

Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option) [Protein synthesis, Translation factors]. Length = 245

>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 1  MGKGGVGKSSTVNSVIGE---RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG 57
          MGK G GKSS  N++ G     V         A   V      GG  L ++D PG+ E G
Sbjct: 3  MGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVW---QTGGDGLVLLDLPGVGERG 59

Query: 58 YVNYQALELIKGFLLNKTIDVLL-------YADRLDAYRVDD 92
            + +  EL +  L     D++L        A   D      
Sbjct: 60 RRDREYEELYRRLL--PEADLVLWLLDADDRALAADHDFYLL 99

The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	100.0
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	100.0
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	100.0
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.97
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.95
COG3596	296	Predicted GTPase [General function prediction only	99.9
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.83
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.77
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.77
COG1159	298	Era GTPase [General function prediction only]	99.76
COG1160	444	Predicted GTPases [General function prediction onl	99.74
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.73
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.7
COG0486	454	ThdF Predicted GTPase [General function prediction	99.66
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.66
COG1160	444	Predicted GTPases [General function prediction onl	99.65
PRK00089	292	era GTPase Era; Reviewed	99.65
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.64
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.63
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.63
COG0218	200	Predicted GTPase [General function prediction only	99.63
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.63
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.63
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.62
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.62
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.61
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.61
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.6
PRK15494	339	era GTPase Era; Provisional	99.6
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.59
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.59
PRK00093	435	GTP-binding protein Der; Reviewed	99.59
PRK03003	472	GTP-binding protein Der; Reviewed	99.58
PRK12299	335	obgE GTPase CgtA; Reviewed	99.57
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.56
PRK12298	390	obgE GTPase CgtA; Reviewed	99.56
PRK03003	472	GTP-binding protein Der; Reviewed	99.56
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.56
PRK12297	424	obgE GTPase CgtA; Reviewed	99.53
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.53
PRK00093	435	GTP-binding protein Der; Reviewed	99.53
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.53
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.53
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.52
COG1084	346	Predicted GTPase [General function prediction only	99.52
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.51
PRK11058	426	GTPase HflX; Provisional	99.5
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.49
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.49
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.48
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.48
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.47
PRK12296	500	obgE GTPase CgtA; Reviewed	99.47
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.47
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.46
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.46
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.46
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.46
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.46
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.45
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.44
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.44
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.44
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.44
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.44
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.44
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.44
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.44
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.43
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.43
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.43
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.43
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.43
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.43
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.43
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.43
PRK04213	201	GTP-binding protein; Provisional	99.42
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.42
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.42
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.42
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.42
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.42
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.42
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.41
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.41
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.41
PLN03118	211	Rab family protein; Provisional	99.41
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.4
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.4
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.4
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.4
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.4
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.4
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.39
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.39
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.39
cd00881	189	GTP_translation_factor GTP translation factor fami	99.39
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.39
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.39
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.39
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.39
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.38
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.38
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.38
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.38
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.38
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.38
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.37
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.37
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.37
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.37
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.37
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.37
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.37
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.37
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.36
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.36
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.36
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.36
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.36
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.36
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.36
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.35
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.35
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.35
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.35
PLN03110	216	Rab GTPase; Provisional	99.35
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.35
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.35
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.35
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.35
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.35
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.35
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.35
PTZ00369	189	Ras-like protein; Provisional	99.35
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.35
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.34
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.34
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.34
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.34
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.34
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.33
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.33
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.33
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.33
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.32
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.32
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.32
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.32
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.32
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.32
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.32
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.31
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.31
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.31
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.31
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.31
PTZ00133	182	ADP-ribosylation factor; Provisional	99.3
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.3
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.3
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.3
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.3
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.29
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.29
PLN00223	181	ADP-ribosylation factor; Provisional	99.29
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.29
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.29
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.29
CHL00071	409	tufA elongation factor Tu	99.29
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.29
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.28
PLN03108	210	Rab family protein; Provisional	99.28
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.28
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.27
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.26
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.26
COG2262	411	HflX GTPases [General function prediction only]	99.26
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.24
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.24
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.23
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.23
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.22
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.22
PRK05306	787	infB translation initiation factor IF-2; Validated	99.2
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.19
COG0536	369	Obg Predicted GTPase [General function prediction	99.18
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.18
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.17
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.16
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.16
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.16
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.15
PLN00023	334	GTP-binding protein; Provisional	99.14
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.14
KOG0395	196	consensus Ras-related GTPase [General function pre	99.14
PLN03127	447	Elongation factor Tu; Provisional	99.14
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.13
PRK12317	425	elongation factor 1-alpha; Reviewed	99.13
PRK09866	741	hypothetical protein; Provisional	99.13
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.12
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.11
PLN03126	478	Elongation factor Tu; Provisional	99.11
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.11
COG1100	219	GTPase SAR1 and related small G proteins [General	99.1
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.1
PRK10218	607	GTP-binding protein; Provisional	99.09
PRK12736	394	elongation factor Tu; Reviewed	99.09
PRK00049	396	elongation factor Tu; Reviewed	99.09
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.08
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.08
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.06
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.06
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.06
CHL00189	742	infB translation initiation factor 2; Provisional	99.05
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.05
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.05
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.04
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.04
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.04
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.03
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.03
PRK09601	364	GTP-binding protein YchF; Reviewed	99.02
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.02
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.01
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.0
PTZ00258	390	GTP-binding protein; Provisional	99.0
PRK12735	396	elongation factor Tu; Reviewed	98.99
COG1163	365	DRG Predicted GTPase [General function prediction	98.99
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.99
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.99
PRK12739	691	elongation factor G; Reviewed	98.98
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	98.98
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.97
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.96
PRK00007	693	elongation factor G; Reviewed	98.96
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.95
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.94
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.93
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.92
PRK04004	586	translation initiation factor IF-2; Validated	98.91
KOG0394	210	consensus Ras-related GTPase [General function pre	98.9
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.89
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.89
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.89
PRK13351	687	elongation factor G; Reviewed	98.88
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.87
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.86
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.86
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.86
PRK12740	668	elongation factor G; Reviewed	98.85
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.85
PRK12288	347	GTPase RsgA; Reviewed	98.82
PRK12289	352	GTPase RsgA; Reviewed	98.82
PRK09602	396	translation-associated GTPase; Reviewed	98.82
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.8
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.8
COG1162	301	Predicted GTPases [General function prediction onl	98.78
PRK05433	600	GTP-binding protein LepA; Provisional	98.76
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.76
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	98.74
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	98.73
PTZ00416	836	elongation factor 2; Provisional	98.73
PTZ00141	446	elongation factor 1- alpha; Provisional	98.73
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.73
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	98.71
COG1161	322	Predicted GTPases [General function prediction onl	98.7
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.67
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.65
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.64
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.63
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.62
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	98.59
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.58
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.57
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	98.56
PRK00098	298	GTPase RsgA; Reviewed	98.55
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.55
KOG2486	320	consensus Predicted GTPase [General function predi	98.53
PRK13796	365	GTPase YqeH; Provisional	98.53
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.52
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.51
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.49
PRK07560	731	elongation factor EF-2; Reviewed	98.48
PLN00043	447	elongation factor 1-alpha; Provisional	98.47
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	98.46
COG2229	187	Predicted GTPase [General function prediction only	98.46
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.46
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.45
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.45
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	98.44
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.41
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.35
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.35
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.33
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.32
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.31
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.31
PTZ00099	176	rab6; Provisional	98.29
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	98.24
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.24
KOG1145	683	consensus Mitochondrial translation initiation fac	98.23
PRK13768	253	GTPase; Provisional	98.2
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.18
PRK14845	1049	translation initiation factor IF-2; Provisional	98.14
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.13
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.13
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.12
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.12
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.11
KOG4252	246	consensus GTP-binding protein [Signal transduction	98.1
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.03
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.02
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.02
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.01
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	97.99
KOG0090	238	consensus Signal recognition particle receptor, be	97.97
KOG0410	410	consensus Predicted GTP binding protein [General f	97.97
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.94
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.93
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.92
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	97.88
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.87
PRK14974	336	cell division protein FtsY; Provisional	97.86
PRK10416	318	signal recognition particle-docking protein FtsY;	97.84
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.84
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.81
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.81
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.8
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.78
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.77
KOG3886	295	consensus GTP-binding protein [Signal transduction	97.76
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.76
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	97.7
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	97.67
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.66
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.65
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.64
cd03112	158	CobW_like The function of this protein family is u	97.63
KOG2484	435	consensus GTPase [General function prediction only	97.61
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.58
PRK01889	356	GTPase RsgA; Reviewed	97.57
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.55
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.55
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.53
PRK10867	433	signal recognition particle protein; Provisional	97.53
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.47
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.42
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.28
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.25
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.23
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.22
TIGR00959	428	ffh signal recognition particle protein. This mode	97.2
COG3523	1188	IcmF Type VI protein secretion system component Va	97.18
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	97.17
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.15
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.14
cd03110	179	Fer4_NifH_child This protein family's function is	97.1
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	96.99
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.97
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.97
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	96.89
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	96.86
cd03111	106	CpaE_like This protein family consists of proteins	96.85
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.81
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	96.8
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.66
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.59
KOG0461	522	consensus Selenocysteine-specific elongation facto	96.54
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.47
cd02036	179	MinD Bacterial cell division requires the formatio	96.45
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.43
PRK14737	186	gmk guanylate kinase; Provisional	96.42
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.41
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.39
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.36
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	96.36
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.34
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.31
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.28
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	96.28
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.24
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	96.24
PF00004	132	AAA: ATPase family associated with various cellula	96.22
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.2
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.14
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.09
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	96.09
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.06
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	95.93
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.91
PRK00300	205	gmk guanylate kinase; Provisional	95.88
PRK14738	206	gmk guanylate kinase; Provisional	95.87
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.86
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	95.84
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.82
PF05879	742	RHD3: Root hair defective 3 GTP-binding protein (R	95.66
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	95.64
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.54
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	95.54
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.49
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	95.38
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	95.38
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.33
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.32
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.31
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.31
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.3
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	95.27
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.27
PRK11537	318	putative GTP-binding protein YjiA; Provisional	95.27
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.26
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.25
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.24
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.23
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.23
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.22
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.2
COG4525	259	TauB ABC-type taurine transport system, ATPase com	95.18
KOG0465	721	consensus Mitochondrial elongation factor [Transla	95.15
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.14
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.14
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	95.13
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.12
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.11
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.1
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.09
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.09
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.08
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.07
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.06
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.05
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.05
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.04
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.03
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.03
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.03
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.03
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.02
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	95.02
KOG1673	205	consensus Ras GTPases [General function prediction	95.01
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.0
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	94.99
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	94.95
PHA02518	211	ParA-like protein; Provisional	94.94
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	94.93
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	94.91
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	94.9
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	94.88
KOG0054	1381	consensus Multidrug resistance-associated protein/	94.87
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	94.86
COG4988	559	CydD ABC-type transport system involved in cytochr	94.86
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	94.85
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	94.85
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	94.84
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	94.84
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	94.84
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	94.83
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	94.82
cd03215	182	ABC_Carb_Monos_II This family represents domain II	94.81
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	94.79
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	94.78
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	94.77
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	94.77
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	94.77
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	94.77
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	94.76
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	94.76
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	94.74
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	94.74
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	94.72
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	94.72
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	94.71
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.71
PRK10908	222	cell division protein FtsE; Provisional	94.71
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	94.7
PRK11545	163	gntK gluconate kinase 1; Provisional	94.7
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.7
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	94.69
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	94.69
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	94.68
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	94.67
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.66
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	94.65
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	94.64
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	94.64
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	94.64
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	94.64
PRK13695	174	putative NTPase; Provisional	94.63
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	94.63
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.62
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	94.62
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	94.61
KOG4181	491	consensus Uncharacterized conserved protein [Funct	94.61
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	94.61
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	94.61
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	94.6
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	94.59
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	94.59
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	94.59

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=100.00  E-value=6.3e-60  Score=409.58  Aligned_cols=256  Identities=66%  Similarity=1.086  Sum_probs=238.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|++|+||||++|+|+|+.++.++.+.+++..+.......+|+.++||||||+.+....++++.+.++.++...++|+||
T Consensus        44 vGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVL  123 (313)
T TIGR00991        44 MGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLL  123 (313)
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEE
Confidence            69999999999999999998888887777666666666789999999999999998766777777777777777999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcccCccccccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYA  160 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  160 (256)
                      ||.++|..|+++.|.++++.|++.||+++|+++|||+||+|..++++.++++|+.++++.++++|+++++..+..++...
T Consensus       124 yV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~  203 (313)
T TIGR00991       124 YVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFP  203 (313)
T ss_pred             EEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhccccccccccc
Confidence            99999988899999999999999999999999999999999988899999999999999999999999888777777788


Q ss_pred             chHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCCCccccchhhccCCCCCCCCcchhhHHHHHHHHH-HH
Q 025189          161 VPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLI-LK  239 (256)
Q Consensus       161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~  239 (256)
                      +|+.++||++.|.+|+.+|++||+++.|++.|++++++.+.+.++++++|++++++++||.++|+||||++++|||| +|
T Consensus       204 ~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (313)
T TIGR00991       204 IPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVK  283 (313)
T ss_pred             CCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCCeEecHHHccCCCCCcccccHHHHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 79


Q ss_pred             HHHHHHHHhhhhcCCCC
Q 025189          240 WIEGAIKSDIAKDKKPY  256 (256)
Q Consensus       240 ~~~~~~~~~~~~~~~~~  256 (256)
                      ||+++|++||+++++|.
T Consensus       284 ~~~~~~~~~~~~~~~~~  300 (313)
T TIGR00991       284 PIRRAIHADIANEKKDA  300 (313)
T ss_pred             HHHHHHHHHHhhccCcc
Confidence            99999999999999873

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=100.00  E-value=2.6e-46  Score=347.10  Aligned_cols=245  Identities=31%  Similarity=0.503  Sum_probs=216.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~~~~d   77 (256)
                      +|+||+|||||+|+|+|+.++.++...+.|..+.......+|..+.||||||+.++...   ..++++.+..++...++|
T Consensus       124 VGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpD  203 (763)
T TIGR00993       124 LGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPD  203 (763)
T ss_pred             ECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCC
Confidence            69999999999999999988877776555666666666778999999999999987532   245666777777767899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC-----CchhHhhhhccHHHHHHHHHhcccC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG-----LNYDVYCSKRSDALLKTIRLGAGLG  152 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~-----~~~~~~~~~~~~~l~~~i~~~~~~~  152 (256)
                      +||||++++..+.+.++..+++.|++.||+++|+++|||+|++|..++++     .++++|+.++.+.++++|++|++..
T Consensus       204 VVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Irq~~g~~  283 (763)
T TIGR00993       204 IVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDL  283 (763)
T ss_pred             EEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHHHhcCcc
Confidence            99999999865666688899999999999999999999999999987765     6899999999999999999998755


Q ss_pred             ccccccCCchHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHH-HhhhCCCCccccchhhccCCCCCCCCcchhhHHH
Q 025189          153 KHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGIT-DVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVI  231 (256)
Q Consensus       153 ~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  231 (256)
                      ....+..++|+.++||++.|.+|+.+|++||++..|++.|+..|. ..+.+++.+++.+++++++++++.++++|+||++
T Consensus       284 ~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~~~plp~  363 (763)
T TIGR00993       284 RLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSRAPPLPY  363 (763)
T ss_pred             eecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCcccccccCCchHH
Confidence            545556789999999999999999999999999999999999999 8999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHHHHHH
Q 025189          232 GLQWLI-LKWIEGAI  245 (256)
Q Consensus       232 ~~~~~~-~~~~~~~~  245 (256)
                      ++|||| +|++-+.=
T Consensus       364 ~ls~ll~~r~~~k~~  378 (763)
T TIGR00993       364 LLSWLLQSRAHPKLP  378 (763)
T ss_pred             HHHHHhhcCCCCCCh
Confidence            999999 89865543

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=100.00  E-value=1.6e-37  Score=265.65  Aligned_cols=209  Identities=46%  Similarity=0.702  Sum_probs=175.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc---CcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~---~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|++|||||||+|+|+|...+.++.+.++|..+..+....+|..+++|||||+++...   .++.+++.+++++...++|
T Consensus        37 vG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~id  116 (249)
T cd01853          37 LGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPD  116 (249)
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCC
Confidence            6999999999999999999888888888888888888888999999999999998732   3456777777787777899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHH-HHHHHHHhcccCcccc
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDA-LLKTIRLGAGLGKHEF  156 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~-l~~~i~~~~~~~~~~~  156 (256)
                      ++|||.++|..|++..|..+++.|.+.||.++|+++++|+||+|..++++.....+..++... ...++.++.++.+ ..
T Consensus       117 vIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  195 (249)
T cd01853         117 VVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAA-GD  195 (249)
T ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhc-cC
Confidence            999999999888999999999999999999999999999999999888877655555444433 3444445544443 23


Q ss_pred             ccCCchHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCCCccccc
Q 025189          157 EDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVD  210 (256)
Q Consensus       157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~~~~~~~  210 (256)
                      ....+|+.+++|++.|.+|+.+|++||+++.|++.|+..|.........+++++
T Consensus       196 ~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~~~~~~~~~~  249 (249)
T cd01853         196 PRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKLLSEANILLD  249 (249)
T ss_pred             ccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhccccccccC
Confidence            346799999999999999999999999999999999999999988877666653

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.97  E-value=5.3e-30  Score=215.00  Aligned_cols=176  Identities=29%  Similarity=0.402  Sum_probs=137.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh--hcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--LNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d   77 (256)
                      +|+||+||||++|+|+|...+..+. ..++|..+..+...++|+.++||||||+.|+...++++.+.|.+|+  +.+++|
T Consensus         6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~h   85 (212)
T PF04548_consen    6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPH   85 (212)
T ss_dssp             ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ES
T ss_pred             ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCe
Confidence            6999999999999999999877663 4577888999889999999999999999999888888888898876  568999


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhcc-HHHHHHHHHhcc-c---C
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRS-DALLKTIRLGAG-L---G  152 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~-~---~  152 (256)
                      +||||++++  |++..+...++.+.+.||+++|++++||+|++|....  ..+++|+++.. ..+++++++|++ |   +
T Consensus        86 a~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R~~~f~  161 (212)
T PF04548_consen   86 AFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGRYHVFN  161 (212)
T ss_dssp             EEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTCEEECC
T ss_pred             EEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCEEEEEe
Confidence            999998888  9999999999999999999999999999999987533  34899998544 679999998863 3   2


Q ss_pred             cc-------cccc----CCchHHHHhcCCCCCCCCcCcc
Q 025189          153 KH-------EFED----YAVPVALVENSGRCSKNENDEK  180 (256)
Q Consensus       153 ~~-------~~~~----~~ip~~~~~n~~~~~~~~~~~~  180 (256)
                      +.       ..|.    .+|+.++.+|++.||+++.+++
T Consensus       162 n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~  200 (212)
T PF04548_consen  162 NKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEE  200 (212)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHH
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHH
Confidence            22       0111    5799999999999998876554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.95  E-value=1e-26  Score=192.71  Aligned_cols=146  Identities=24%  Similarity=0.335  Sum_probs=123.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh--hcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--LNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d   77 (256)
                      +|+||+|||||+|+|+|+..+..+. ..++|..+..+...++|+.++||||||+++.........+.+.+++  +.+++|
T Consensus         6 vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~   85 (196)
T cd01852           6 VGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPH   85 (196)
T ss_pred             ECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCE
Confidence            6999999999999999998765553 3467888888888889999999999999997655555566666654  357999


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcc
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG  150 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  150 (256)
                      +||||++++  +++..+..+++.+++.||+++|+++++|+|++|..  .+.++++|++.....+++++++|+.
T Consensus        86 ~illVi~~~--~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l--~~~~~~~~~~~~~~~l~~l~~~c~~  154 (196)
T cd01852          86 AFLLVVPLG--RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL--EGGTLEDYLENSCEALKRLLEKCGG  154 (196)
T ss_pred             EEEEEEECC--CcCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc--CCCcHHHHHHhccHHHHHHHHHhCC
Confidence            999998877  58999999999999999999999999999999975  3348899998878899999999863

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.90  E-value=2.7e-23  Score=175.48  Aligned_cols=182  Identities=24%  Similarity=0.326  Sum_probs=137.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|+||+|||||||+||+.+..+++..+.++....+....+++..+++|||||++|+...+.++.+.++..+  ++.|++|
T Consensus        45 ~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL  122 (296)
T COG3596          45 MGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVL  122 (296)
T ss_pred             ecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEE
Confidence            69999999999999998877777777777776666667788899999999999999888888888888877  7899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHH--hc--ccCcccc
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRL--GA--GLGKHEF  156 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~--~~--~~~~~~~  156 (256)
                      ++++.++ |.-..|.+++..+.-....   +++++++|++|...+ +.+|+.-...++..++++++.  |.  ++...  
T Consensus       123 ~l~~~~d-raL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p-~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~--  195 (296)
T COG3596         123 WLIKADD-RALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP-GREWDSAGHQPSPAIKQFIEEKAEALGRLFQE--  195 (296)
T ss_pred             EeccCCC-ccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc-ccccccccCCCCHHHHHHHHHHHHHHHHHHhh--
Confidence            9999988 5445566666665544333   799999999998643 345555555567788888853  21  22111  


Q ss_pred             ccCCchHHHHhcCCCCCCCCcCcccCCCCCCc-hHHHHHHHHHhhhCCCCccccc
Q 025189          157 EDYAVPVALVENSGRCSKNENDEKILPNGNAW-IPTLVKGITDVATNKSKSIVVD  210 (256)
Q Consensus       157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W-~~~L~~~~i~~~~~~~~~~~~~  210 (256)
                         .-|+        |+..        ...+| +..|...+++.+|.++|..++.
T Consensus       196 ---V~pV--------~~~~--------~r~~wgl~~l~~ali~~lp~e~rs~~a~  231 (296)
T COG3596         196 ---VKPV--------VAVS--------GRLPWGLKELVRALITALPVEARSPLAA  231 (296)
T ss_pred             ---cCCe--------EEec--------cccCccHHHHHHHHHHhCcccccchhhh
Confidence               1222        3322        12459 9999999999999999998876

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.83  E-value=2.4e-22  Score=179.19  Aligned_cols=196  Identities=16%  Similarity=0.169  Sum_probs=123.6

Q ss_pred             CCCCCCCHHHHHHHHhC-----CCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIG-----ERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g-----~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (256)
                      +|.+|+||||+||+|.|     +..|.++..+.++....+.+..+.+  +++||.||.+.+.+..++|++.+.-    ..
T Consensus        41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pn--v~lWDlPG~gt~~f~~~~Yl~~~~~----~~  114 (376)
T PF05049_consen   41 TGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPN--VTLWDLPGIGTPNFPPEEYLKEVKF----YR  114 (376)
T ss_dssp             EESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TT--EEEEEE--GGGSS--HHHHHHHTTG----GG
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCC--CeEEeCCCCCCCCCCHHHHHHHccc----cc
Confidence            49999999999999988     2345555544444333334444554  6999999999998888899987752    48


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC--CCCCCCchhHhhhhccHHHHHHHHHhcccCc
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL--CPPDGLNYDVYCSKRSDALLKTIRLGAGLGK  153 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  153 (256)
                      +|+||++   .+.|+++.+..+++.++++-     +++++|.||+|.  ...+......|.+  .+.++++.+.|.....
T Consensus       115 yD~fiii---~s~rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~Dl~~~~~~~p~~f~~--e~~L~~IR~~c~~~L~  184 (376)
T PF05049_consen  115 YDFFIII---SSERFTENDVQLAKEIQRMG-----KKFYFVRTKVDSDLYNERRRKPRTFNE--EKLLQEIRENCLENLQ  184 (376)
T ss_dssp             -SEEEEE---ESSS--HHHHHHHHHHHHTT------EEEEEE--HHHHHHHHHCC-STT--H--HTHHHHHHHHHHHHHH
T ss_pred             cCEEEEE---eCCCCchhhHHHHHHHHHcC-----CcEEEEEecccccHhhhhccCCcccCH--HHHHHHHHHHHHHHHH
Confidence            9999988   34599999999999999884     899999999974  2111111122222  3345555555543211


Q ss_pred             cccccCCchHHHHhcCCCCCCCCcCcccCCCCCCc-hHHHHHHHHHhhhCCCCccccc------hhhccCCCCCCCCcch
Q 025189          154 HEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW-IPTLVKGITDVATNKSKSIVVD------KKLIDGSGSDDKGKMW  226 (256)
Q Consensus       154 ~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W-~~~L~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  226 (256)
                       .......+++++++...              ..| |+.|.+++...+|.++|+.++.      +++|+.++.+.++++|
T Consensus       185 -k~gv~~P~VFLVS~~dl--------------~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw  249 (376)
T PF05049_consen  185 -KAGVSEPQVFLVSSFDL--------------SKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIW  249 (376)
T ss_dssp             -CTT-SS--EEEB-TTTT--------------TSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHH
T ss_pred             -HcCCCcCceEEEeCCCc--------------ccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence             11123467777766532              238 9999999999999999999987      6788888889999998


Q ss_pred             h
Q 025189          227 I  227 (256)
Q Consensus       227 ~  227 (256)
                      .
T Consensus       250 ~  250 (376)
T PF05049_consen  250 L  250 (376)
T ss_dssp             H
T ss_pred             H
Confidence            7

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.77  E-value=1.1e-18  Score=144.76  Aligned_cols=181  Identities=18%  Similarity=0.178  Sum_probs=107.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC----CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF----QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~----~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|+|||||+|+|+|......+..    ..+|.....+.. -....+++|||||+++.....+++++.+.    ..++
T Consensus         7 ~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~----~~~~   81 (197)
T cd04104           7 TGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMK----FSEY   81 (197)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhC----ccCc
Confidence            69999999999999999643221111    112222222211 12347899999999987655555654432    2578


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcccCcccc
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEF  156 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~  156 (256)
                      |++|+|  .+ .+++..+..+++.+.+. +    +++++|+||+|...+....-..-...+++.++++.+.+..... ..
T Consensus        82 d~~l~v--~~-~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~  152 (197)
T cd04104          82 DFFIII--SS-TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ-EA  152 (197)
T ss_pred             CEEEEE--eC-CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH-Hc
Confidence            999998  33 37899999999988886 3    7899999999985322110000000012233333333322111 00


Q ss_pred             ccCCchHHHHhcCCCCCCCCcCcccCCCCCCc-hHHHHHHHHHhhhCCCCcccc
Q 025189          157 EDYAVPVALVENSGRCSKNENDEKILPNGNAW-IPTLVKGITDVATNKSKSIVV  209 (256)
Q Consensus       157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W-~~~L~~~~i~~~~~~~~~~~~  209 (256)
                      .....+++++++..              ...| ++.|.++++..+|+++|+.+.
T Consensus       153 ~~~~p~v~~vS~~~--------------~~~~~~~~l~~~~~~~l~~~~~~~~~  192 (197)
T cd04104         153 GVSEPPVFLVSNFD--------------PSDYDFPKLRETLLKDLPAHKRHVFL  192 (197)
T ss_pred             CCCCCCEEEEeCCC--------------hhhcChHHHHHHHHHHhhHHHHHHHH
Confidence            11123444444321              1338 999999999999999887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.77  E-value=7.6e-18  Score=127.72  Aligned_cols=110  Identities=19%  Similarity=0.386  Sum_probs=85.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH--HHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ--ALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~--~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||+|+|++.+.+.++..+++|..+......+++..+.++||||+.+.......  ....+.+.+  ..+|+
T Consensus         5 iG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~   82 (116)
T PF01926_consen    5 IGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI--SKSDL   82 (116)
T ss_dssp             EESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--CTESE
T ss_pred             ECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--HHCCE
Confidence            59999999999999999877788888888888877777889999999999999886544331  222222222  68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      ++||++.+. ..++.+.++++.|+ .     .+|+++|+||
T Consensus        83 ii~vv~~~~-~~~~~~~~~~~~l~-~-----~~~~i~v~NK  116 (116)
T PF01926_consen   83 IIYVVDASN-PITEDDKNILRELK-N-----KKPIILVLNK  116 (116)
T ss_dssp             EEEEEETTS-HSHHHHHHHHHHHH-T-----TSEEEEEEES
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHh-c-----CCCEEEEEcC
Confidence            999988664 45566778888784 1     2899999997

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.76  E-value=8e-18  Score=144.16  Aligned_cols=117  Identities=20%  Similarity=0.319  Sum_probs=96.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH-HHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL-ELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~-~~i~~~l~~~~~d~v   79 (256)
                      +|+++||||||+|+|+|++++.+|+.+.||+.........+..++.++||||+..+...-.+++ +.....+  .++|++
T Consensus        12 iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl--~dvDli   89 (298)
T COG1159          12 IGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL--KDVDLI   89 (298)
T ss_pred             EcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh--ccCcEE
Confidence            6999999999999999999999999999999998888888899999999999998754333322 2222223  699999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      |||++.+. .++..|..+++.+++..     .|+++++||.|...+
T Consensus        90 lfvvd~~~-~~~~~d~~il~~lk~~~-----~pvil~iNKID~~~~  129 (298)
T COG1159          90 LFVVDADE-GWGPGDEFILEQLKKTK-----TPVILVVNKIDKVKP  129 (298)
T ss_pred             EEEEeccc-cCCccHHHHHHHHhhcC-----CCeEEEEEccccCCc
Confidence            99977764 38889999999988832     799999999998643

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.74  E-value=1.8e-17  Score=149.15  Aligned_cols=115  Identities=23%  Similarity=0.283  Sum_probs=93.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHh--hhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF--LLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~--l~~~~~d~   78 (256)
                      +|+++||||||+|+|+|+..+.|++++++|++..+...++.++.+.+|||+|+.+.+.  +...+.++.-  ....++|+
T Consensus         9 VGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~~l~~~i~~Qa~~Ai~eADv   86 (444)
T COG1160           9 VGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--DELQELIREQALIAIEEADV   86 (444)
T ss_pred             ECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--hHHHHHHHHHHHHHHHhCCE
Confidence            6999999999999999999999999999999999999999999999999999986441  1222222211  12368999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|||++... -+++.|..+.+.|.+.     ++|+++|+||+|..
T Consensus        87 ilfvVD~~~-Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~  125 (444)
T COG1160          87 ILFVVDGRE-GITPADEEIAKILRRS-----KKPVILVVNKIDNL  125 (444)
T ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEEcccCc
Confidence            999954432 3899999999998854     38999999999974

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.73  E-value=3e-17  Score=130.46  Aligned_cols=117  Identities=17%  Similarity=0.280  Sum_probs=85.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.++||||||+|+|+|.. +.+++++++|.+.......+++..+.++||||+++......+- +..++++....+|+++
T Consensus         6 vG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee-~v~~~~l~~~~~D~ii   83 (156)
T PF02421_consen    6 VGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEE-RVARDYLLSEKPDLII   83 (156)
T ss_dssp             EESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHH-HHHHHHHHHTSSSEEE
T ss_pred             ECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHH-HHHHHHHhhcCCCEEE
Confidence            5999999999999999998 5789999999999888889999999999999998864332211 1223445557899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG  127 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~  127 (256)
                      +|+  |+.++ +.+..+..++.+.-     .|+++|+||+|....++
T Consensus        84 ~Vv--Da~~l-~r~l~l~~ql~e~g-----~P~vvvlN~~D~a~~~g  122 (156)
T PF02421_consen   84 VVV--DATNL-ERNLYLTLQLLELG-----IPVVVVLNKMDEAERKG  122 (156)
T ss_dssp             EEE--EGGGH-HHHHHHHHHHHHTT-----SSEEEEEETHHHHHHTT
T ss_pred             EEC--CCCCH-HHHHHHHHHHHHcC-----CCEEEEEeCHHHHHHcC
Confidence            994  44344 34455666666653     89999999999864443

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01894 EngA1 EngA1 subfamily

Probab=99.70  E-value=2.3e-16  Score=124.57  Aligned_cols=115  Identities=21%  Similarity=0.261  Sum_probs=83.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|+|||||+|+|++......+..+++|...........+..+.+|||||+.+... ...........++  .++|++
T Consensus         3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d~i   80 (157)
T cd01894           3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEADVI   80 (157)
T ss_pred             cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCCEE
Confidence            6999999999999999987666666677777777777778889999999999986533 1112222222222  579999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++... ..+..+..+.+.+.+..     .|+++|+||+|+.
T Consensus        81 i~v~d~~~-~~~~~~~~~~~~~~~~~-----~piiiv~nK~D~~  118 (157)
T cd01894          81 LFVVDGRE-GLTPADEEIAKYLRKSK-----KPVILVVNKVDNI  118 (157)
T ss_pred             EEEEeccc-cCCccHHHHHHHHHhcC-----CCEEEEEECcccC
Confidence            99977654 34455556666665432     8999999999985

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.66  E-value=6.8e-16  Score=139.43  Aligned_cols=115  Identities=23%  Similarity=0.356  Sum_probs=89.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH-HHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~-~~~~~i~~~l~~~~~d~v   79 (256)
                      +|++|||||||+|+|++++.+.|++.++||++.......++|.++.++||.|+.++...-+ .-.+.-++  ....+|++
T Consensus       223 iG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~--~i~~ADlv  300 (454)
T COG0486         223 IGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK--AIEEADLV  300 (454)
T ss_pred             ECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH--HHHhCCEE
Confidence            6999999999999999999999999999999999999999999999999999997643222 11111111  22589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      |||++.+. ..++.+..+++.+    ..+  +++++|+||+|+..
T Consensus       301 L~v~D~~~-~~~~~d~~~~~~~----~~~--~~~i~v~NK~DL~~  338 (454)
T COG0486         301 LFVLDASQ-PLDKEDLALIELL----PKK--KPIIVVLNKADLVS  338 (454)
T ss_pred             EEEEeCCC-CCchhhHHHHHhc----ccC--CCEEEEEechhccc
Confidence            99965553 2567777777622    222  79999999999964

>TIGR00436 era GTP-binding protein Era

Probab=99.66  E-value=1.1e-15  Score=132.73  Aligned_cols=114  Identities=17%  Similarity=0.263  Sum_probs=81.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH-HHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~-~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|++.+.++..+++|..........++.++.+|||||+.+...... ...+.....+  .++|++
T Consensus         6 iG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~aDvv   83 (270)
T TIGR00436         6 LGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GGVDLI   83 (270)
T ss_pred             ECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hhCCEE
Confidence            6999999999999999998878888888888766555555677899999999986532211 1222222223  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++.+..  ...+..+++.+...     ..|+++|+||+|+.
T Consensus        84 l~VvD~~~~--~~~~~~i~~~l~~~-----~~p~ilV~NK~Dl~  120 (270)
T TIGR00436        84 LFVVDSDQW--NGDGEFVLTKLQNL-----KRPVVLTRNKLDNK  120 (270)
T ss_pred             EEEEECCCC--CchHHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence            999777642  22234555555442     27999999999985

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.65  E-value=3.7e-16  Score=140.82  Aligned_cols=126  Identities=21%  Similarity=0.319  Sum_probs=98.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (256)
                      +|++++|||||+|+|+|++...+++.+++|++......+++|+.+.++||.|+..-....+  +.++.++..-....+|+
T Consensus       184 iGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~v  263 (444)
T COG1160         184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADV  263 (444)
T ss_pred             EeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCE
Confidence            6999999999999999999999999999999999999999999999999999987543322  22222222223358999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV  132 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~  132 (256)
                      +++|++... .++++|.+++..+.+..     +.+++|+||||+.+.+....++
T Consensus       264 vllviDa~~-~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~  311 (444)
T COG1160         264 VLLVIDATE-GISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEE  311 (444)
T ss_pred             EEEEEECCC-CchHHHHHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHH
Confidence            999955543 38999999999888774     8999999999986443333333

>PRK00089 era GTPase Era; Reviewed

Probab=99.65  E-value=2.2e-15  Score=132.25  Aligned_cols=115  Identities=20%  Similarity=0.318  Sum_probs=83.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|+.++.++..+.+|..........++.++.++||||+.+....-.+ ........+  ..+|++
T Consensus        11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~--~~~D~i   88 (292)
T PRK00089         11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL--KDVDLV   88 (292)
T ss_pred             ECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH--hcCCEE
Confidence            69999999999999999998877877766665554444446689999999999875422111 122222222  689999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++++. .++..+..+++.+...     ..|+++|+||+|+.
T Consensus        89 l~vvd~~~-~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~  126 (292)
T PRK00089         89 LFVVDADE-KIGPGDEFILEKLKKV-----KTPVILVLNKIDLV  126 (292)
T ss_pred             EEEEeCCC-CCChhHHHHHHHHhhc-----CCCEEEEEECCcCC
Confidence            99988775 4677777777766632     27999999999985

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.64  E-value=4.5e-15  Score=117.43  Aligned_cols=113  Identities=17%  Similarity=0.253  Sum_probs=79.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++.|.. +.++..+++|........++++..+.+|||||+.+......+. .....++...++|+++
T Consensus         2 ~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~d~vi   79 (158)
T cd01879           2 VGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE-KVARDFLLGEKPDLIV   79 (158)
T ss_pred             CCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH-HHHHHHhcCCCCcEEE
Confidence            6999999999999999986 4566667777777666777888899999999998754322110 1112233235899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++.+.  . +....++..+.+.     -+++++|+||+|+.
T Consensus        80 ~v~d~~~--~-~~~~~~~~~~~~~-----~~~~iiv~NK~Dl~  114 (158)
T cd01879          80 NVVDATN--L-ERNLYLTLQLLEL-----GLPVVVALNMIDEA  114 (158)
T ss_pred             EEeeCCc--c-hhHHHHHHHHHHc-----CCCEEEEEehhhhc
Confidence            9976653  2 2333444444432     27999999999985

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.63  E-value=7.5e-15  Score=115.67  Aligned_cols=114  Identities=25%  Similarity=0.356  Sum_probs=81.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc-HHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|+||||++|++++...+.++..+++|..........++..+++|||||+.+..... .........++  ..+|++
T Consensus         7 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~~~   84 (157)
T cd04164           7 VGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI--EEADLV   84 (157)
T ss_pred             ECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH--hhCCEE
Confidence            699999999999999998766666667777776666667788899999999998764321 11111222222  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++|++++. +.+..+..++..   ..    .+|+++|+||+|+.+
T Consensus        85 v~v~d~~~-~~~~~~~~~~~~---~~----~~~vi~v~nK~D~~~  121 (157)
T cd04164          85 LFVIDASR-GLDEEDLEILEL---PA----DKPIIVVLNKSDLLP  121 (157)
T ss_pred             EEEEECCC-CCCHHHHHHHHh---hc----CCCEEEEEEchhcCC
Confidence            99988875 445555554443   21    279999999999853

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.63  E-value=1.4e-15  Score=122.56  Aligned_cols=116  Identities=20%  Similarity=0.187  Sum_probs=77.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcC----cHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYV----NYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~----~~~~~~~i~~~l~~~~   75 (256)
                      +|++|||||||+|+|.+... .++..+.+|..+......++ +.++.+|||||+.+....    ...+...+      .+
T Consensus         2 iG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~------~~   74 (176)
T cd01881           2 VGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI------RR   74 (176)
T ss_pred             CCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH------hc
Confidence            69999999999999999875 45666667777766666777 899999999998653221    11223233      47


Q ss_pred             CcEEEEEEeCCCCC-----CCH-HHHHHHHHHHhhcCC-----cccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYR-----VDD-LDRQIIKAVTGTFGK-----QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r-----~~~-~~~~~~~~l~~~~g~-----~~~~~~ivv~Tk~D~~  123 (256)
                      +|++++|++.++..     ... ....+...+......     ...+|+++|+||+|+.
T Consensus        75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~  133 (176)
T cd01881          75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD  133 (176)
T ss_pred             cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence            99999997776531     111 222233334332211     1238999999999985

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=3.6e-15  Score=121.52  Aligned_cols=114  Identities=23%  Similarity=0.298  Sum_probs=85.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhhcC-C
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLLNK-T   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~~~-~   75 (256)
                      +|+|+|||||+||+|+|+. .|.+|..++.|+....+..  ++. +.+||.||+|-...+.   +.+-..+.+++..+ .
T Consensus        30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~  106 (200)
T COG0218          30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRAN  106 (200)
T ss_pred             EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchh
Confidence            5999999999999999965 6899999998887765543  332 6899999999754333   23445555666432 4


Q ss_pred             CcEEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           76 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        76 ~d~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ..+++++  +|..+ ..+.|.++++.+.+.-     .++++|+||+|..+
T Consensus       107 L~~vvll--iD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~  149 (200)
T COG0218         107 LKGVVLL--IDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKLK  149 (200)
T ss_pred             heEEEEE--EECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCC
Confidence            6666666  45544 6777999999998874     89999999999863

>cd01850 CDC_Septin CDC/Septin

Probab=99.63  E-value=7.9e-15  Score=127.70  Aligned_cols=116  Identities=19%  Similarity=0.345  Sum_probs=77.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC--------CCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS--------FQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG   69 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~--------~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~   69 (256)
                      +|.+|+|||||+|+|++......+.        ...++ ..........+|  .+++||||||+++... +....+.|.+
T Consensus        10 vG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~~~~i~~   88 (276)
T cd01850          10 VGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDCWKPIVD   88 (276)
T ss_pred             EcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhhHHHHHH
Confidence            6999999999999999987654432        11111 122233344566  4689999999998632 1111111111


Q ss_pred             --------------------hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           70 --------------------FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        70 --------------------~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                                          .+.+.++|++||+++.....+...|.++++.+.+.      .++++|+||+|+.
T Consensus        89 yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l  156 (276)
T cd01850          89 YIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence                                11234689999997766545788888888888652      7999999999985

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01898 Obg Obg subfamily

Probab=99.63  E-value=3.4e-15  Score=119.82  Aligned_cols=116  Identities=17%  Similarity=0.199  Sum_probs=78.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-EEEEEeCCCCCCCCcC----cHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYV----NYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~liDTPG~~~~~~~----~~~~~~~i~~~l~~~~   75 (256)
                      ||.+|||||||+|+|.+... .++..+.+|..+......+++. .+.+|||||+.+....    ...+++.+      ..
T Consensus         6 vG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~------~~   78 (170)
T cd01898           6 VGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI------ER   78 (170)
T ss_pred             ECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH------Hh
Confidence            69999999999999998764 4555555566665555566665 8999999998653221    22233333      37


Q ss_pred             CcEEEEEEeCCCC-CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~-r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++++|+++++. ...+....+.+.+.+.......+|+++|+||+|+.
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  127 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL  127 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence            8999999777653 12233345556665543221237899999999985

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.62  E-value=6.9e-15  Score=135.61  Aligned_cols=116  Identities=22%  Similarity=0.215  Sum_probs=90.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC-cHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++...+.++..+++|.........++|..+.+|||||+...... .+.+......++  ..+|++
T Consensus         5 vG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~ad~v   82 (429)
T TIGR03594         5 VGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EEADVI   82 (429)
T ss_pred             ECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hhCCEE
Confidence            69999999999999999987778888888888888888899999999999998643211 122222222223  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++|++... .++..+..+.+.+.+.     .+|+++|+||+|+..
T Consensus        83 l~vvD~~~-~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~  121 (429)
T TIGR03594        83 LFVVDGRE-GLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK  121 (429)
T ss_pred             EEEEeCCC-CCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence            99977654 4778888888888764     289999999999853

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.62  E-value=9.5e-15  Score=119.08  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=79.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhhc-CC
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLLN-KT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~~-~~   75 (256)
                      +|.+|+|||||+|+|++.. ...++...++|..+..+..  + ..+.+|||||++......   ..+...+..++.. ..
T Consensus        24 vG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (179)
T TIGR03598        24 AGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKREN  100 (179)
T ss_pred             EcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChh
Confidence            6999999999999999975 4455555566665554432  2 368999999997654322   2233333444432 35


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++++|++.+. +++..+..+++.+...     .+|+++|+||+|+.
T Consensus       101 ~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~  142 (179)
T TIGR03598       101 LKGVVLLMDIRH-PLKELDLEMLEWLRER-----GIPVLIVLTKADKL  142 (179)
T ss_pred             hcEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence            799999977664 5777887777666543     27899999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.61  E-value=1.2e-14  Score=116.42  Aligned_cols=117  Identities=19%  Similarity=0.248  Sum_probs=76.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH--HHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL--ELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~--~~i~~~l~~~~~d~   78 (256)
                      +|.+||||||++|+|++... .++..+.+|.........+++.++++|||||+.+.........  ..+.. + ....|+
T Consensus         6 ~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~-~-~~~~d~   82 (168)
T cd01897           6 AGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA-L-AHLRAA   82 (168)
T ss_pred             EcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHH-H-HhccCc
Confidence            69999999999999999864 3444445565555555566788999999999965332221111  11111 1 123689


Q ss_pred             EEEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|++.++.. +. +....+++.+.+.+..   .|+++|+||+|+.
T Consensus        83 ~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~---~pvilv~NK~Dl~  126 (168)
T cd01897          83 VLFLFDPSETCGYSLEEQLSLFEEIKPLFKN---KPVIVVLNKIDLL  126 (168)
T ss_pred             EEEEEeCCcccccchHHHHHHHHHHHhhcCc---CCeEEEEEccccC
Confidence            99997776532 22 3334566777665422   7999999999985

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04163 Era Era subfamily

Probab=99.61  E-value=1.5e-14  Score=114.52  Aligned_cols=115  Identities=18%  Similarity=0.284  Sum_probs=80.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH-HHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL-ELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~-~~i~~~l~~~~~d~v   79 (256)
                      +|.+|+||||++|+++|...+.++....++...........+..+.+|||||+.+......... ......  ...+|++
T Consensus         9 ~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~i   86 (168)
T cd04163           9 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA--LKDVDLV   86 (168)
T ss_pred             ECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH--HHhCCEE
Confidence            6999999999999999998766665555555444444455668899999999987654332222 111111  2689999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++.... +...+..+.+.+...     ..++++|+||+|+.
T Consensus        87 ~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~  124 (168)
T cd04163          87 LFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV  124 (168)
T ss_pred             EEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence            999777752 456666676666554     16899999999984

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.60  E-value=2e-14  Score=114.96  Aligned_cols=118  Identities=23%  Similarity=0.336  Sum_probs=79.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+||||++|+|++......+..++++..........++..+.+|||||+.+......  +.............+|+
T Consensus         8 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~   87 (174)
T cd01895           8 IGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADV   87 (174)
T ss_pred             EcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCe
Confidence            6999999999999999987655566666666666566677888899999999986532111  11111111111258999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|++.+. ..+.....+++.+...   +  .++++|+||+|+.+
T Consensus        88 vi~v~d~~~-~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~  127 (174)
T cd01895          88 VLLVIDATE-GITEQDLRIAGLILEE---G--KALVIVVNKWDLVE  127 (174)
T ss_pred             EEEEEeCCC-CcchhHHHHHHHHHhc---C--CCEEEEEeccccCC
Confidence            999977664 3444455555444332   2  79999999999853

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK15494 era GTPase Era; Provisional

Probab=99.60  E-value=1.6e-14  Score=129.37  Aligned_cols=115  Identities=18%  Similarity=0.244  Sum_probs=82.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|...+.++....+|..........++.++.+|||||+.+... ......+.....+  .++|++
T Consensus        58 vG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l--~~aDvi  135 (339)
T PRK15494         58 IGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL--HSADLV  135 (339)
T ss_pred             EcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh--hhCCEE
Confidence            6999999999999999998776777666776666666678889999999999975422 2222222222222  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |+|++... .+...+..+++.+.+.-     .+.++|+||+|+.
T Consensus       136 l~VvD~~~-s~~~~~~~il~~l~~~~-----~p~IlViNKiDl~  173 (339)
T PRK15494        136 LLIIDSLK-SFDDITHNILDKLRSLN-----IVPIFLLNKIDIE  173 (339)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHhcC-----CCEEEEEEhhcCc
Confidence            99976443 46677667777665431     5778999999984

>cd00880 Era_like Era (E

Probab=99.59  E-value=3.7e-14  Score=110.94  Aligned_cols=115  Identities=28%  Similarity=0.424  Sum_probs=77.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|++|+||||++|+|++......+...++|........... +..+.+|||||+.+...........+...+  ..+|++
T Consensus         2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~i   79 (163)
T cd00880           2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLI   79 (163)
T ss_pred             cCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEE
Confidence            69999999999999999876555556666666665555554 678999999999987654442222222222  579999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++.+.. .......+.......     ..++++|+||+|+.
T Consensus        80 l~v~~~~~~-~~~~~~~~~~~~~~~-----~~~~ivv~nK~D~~  117 (163)
T cd00880          80 LFVVDADLR-ADEEEEKLLELLRER-----GKPVLLVLNKIDLL  117 (163)
T ss_pred             EEEEeCCCC-CCHHHHHHHHHHHhc-----CCeEEEEEEccccC
Confidence            999777652 233333322222222     27899999999985

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.59  E-value=1.9e-14  Score=132.66  Aligned_cols=117  Identities=22%  Similarity=0.364  Sum_probs=87.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||+|+|+|.+...++..+++|..+.......+|..+.+|||||+.+......  +.....+..-....+|+
T Consensus       178 vG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~  257 (429)
T TIGR03594       178 IGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV  257 (429)
T ss_pred             ECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence            6999999999999999988766777778888777777778888999999999977543321  11111111101258999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|++... ..+..+..++..+.+. +    +++++|+||+|+.
T Consensus       258 ~ilV~D~~~-~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~  296 (429)
T TIGR03594       258 VLLVLDATE-GITEQDLRIAGLILEA-G----KALVIVVNKWDLV  296 (429)
T ss_pred             EEEEEECCC-CccHHHHHHHHHHHHc-C----CcEEEEEECcccC
Confidence            999988775 5777887777766553 2    7999999999985

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.59  E-value=2e-14  Score=132.91  Aligned_cols=115  Identities=22%  Similarity=0.222  Sum_probs=88.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++...+.++..+++|.........++|..+.+|||||+.+... ....+......++  .++|++
T Consensus         7 vG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i   84 (435)
T PRK00093          7 VGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI--EEADVI   84 (435)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence            6999999999999999998777788888888888888888999999999999986322 1111221222222  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |+|++... +++..+..+.+.+.+.     .+|+++|+||+|..
T Consensus        85 l~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~  122 (435)
T PRK00093         85 LFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP  122 (435)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence            99987764 4677777777777765     27999999999964

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.58  E-value=2.6e-14  Score=133.43  Aligned_cols=115  Identities=18%  Similarity=0.251  Sum_probs=86.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCC-cCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG-YVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~-~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++...+.++..+++|.........++|..+.+|||||+.... .....+......++  ..+|++
T Consensus        44 vG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~aD~i  121 (472)
T PRK03003         44 VGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM--RTADAV  121 (472)
T ss_pred             EcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence            699999999999999998776677777788877777778899999999999986422 11222222222222  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |+|++.++ +.+..+..+.+.+...     .+|+++|+||+|+.
T Consensus       122 l~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~  159 (472)
T PRK03003        122 LFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE  159 (472)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence            99988875 4566677777777643     28999999999984

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.57  E-value=3.5e-14  Score=126.70  Aligned_cols=116  Identities=20%  Similarity=0.226  Sum_probs=84.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (256)
                      ||.+|||||||+|+|.+... .+++++.+|..+......+ ++.+++++||||+.+.....    ..+++.+      .+
T Consensus       164 VG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi------e~  236 (335)
T PRK12299        164 VGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI------ER  236 (335)
T ss_pred             EcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh------hh
Confidence            69999999999999999764 5788888898888887777 56789999999998754432    2344444      47


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++++|+++++....+....+.+.|......-..+|+++|+||+|+.
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~  284 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL  284 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence            899999988775322233344556565542211237999999999985

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.56  E-value=3.8e-14  Score=130.86  Aligned_cols=114  Identities=21%  Similarity=0.280  Sum_probs=82.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++...+.++.++++|.........++|.++.+|||||+.+....-+. .......++  ..+|++
T Consensus       209 vG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~--~~aD~i  286 (442)
T TIGR00450       209 VGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI--KQADLV  286 (442)
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH--hhCCEE
Confidence            69999999999999999887778888888888877788889999999999999764311111 111111122  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++.++ +.+..+. ++..+..   .+  +|+++|+||+|+.
T Consensus       287 l~V~D~s~-~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~  323 (442)
T TIGR00450       287 IYVLDASQ-PLTKDDF-LIIDLNK---SK--KPFILVLNKIDLK  323 (442)
T ss_pred             EEEEECCC-CCChhHH-HHHHHhh---CC--CCEEEEEECccCC
Confidence            99988765 3444443 4443332   12  7999999999984

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.56  E-value=3.3e-14  Score=129.19  Aligned_cols=116  Identities=21%  Similarity=0.234  Sum_probs=84.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (256)
                      ||.+|||||||+|+|++... .++.++.+|..+......+.+ .+++++||||+.+.....    ..+++.+      .+
T Consensus       165 VG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i------~r  237 (390)
T PRK12298        165 LGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL------ER  237 (390)
T ss_pred             EcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH------Hh
Confidence            69999999999999999875 788889999999888877764 579999999998754332    2333333      48


Q ss_pred             CcEEEEEEeCC---CCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLD---AYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d---~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++|+|++++   .....+....+++.+......-..+|.++|+||+|+.
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~  288 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL  288 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence            99999997665   2122234455666666542211237999999999984

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.56  E-value=4.7e-14  Score=131.70  Aligned_cols=117  Identities=22%  Similarity=0.290  Sum_probs=87.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC--cHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV--NYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~--~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.....++..+++|..+......++|..+.+|||||+......  ..+....++.......+|+
T Consensus       217 iG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~  296 (472)
T PRK03003        217 VGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEV  296 (472)
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCE
Confidence            69999999999999999986667777888887777777788999999999998653221  1233333332112268999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++ +.+..+..++..+...   +  +++++|+||+|+.
T Consensus       297 vilV~Da~~-~~s~~~~~~~~~~~~~---~--~piIiV~NK~Dl~  335 (472)
T PRK03003        297 AVVLIDASE-PISEQDQRVLSMVIEA---G--RALVLAFNKWDLV  335 (472)
T ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHc---C--CCEEEEEECcccC
Confidence            999988775 5677777777666542   2  7999999999985

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.56  E-value=4.6e-14  Score=126.75  Aligned_cols=118  Identities=19%  Similarity=0.178  Sum_probs=77.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.. +.+++..++|..+......+ +|.++.+|||||+...-  .....+.++..+ ....+|+
T Consensus       195 vG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tle~~~~ADl  271 (351)
T TIGR03156       195 VGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATLEEVREADL  271 (351)
T ss_pred             ECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHHHHHHhCCE
Confidence            6999999999999999987 35666666777777767777 57899999999994321  111122222211 1258999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|+++++....+....+.+.+.+.-..+  +|+++|+||+|+.
T Consensus       272 il~VvD~s~~~~~~~~~~~~~~L~~l~~~~--~piIlV~NK~Dl~  314 (351)
T TIGR03156       272 LLHVVDASDPDREEQIEAVEKVLEELGAED--IPQLLVYNKIDLL  314 (351)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHhccCC--CCEEEEEEeecCC
Confidence            999987765222222222334444432122  7999999999985

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.53  E-value=1e-13  Score=126.86  Aligned_cols=115  Identities=20%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (256)
                      +|.++||||||+|+|++... .+++++.+|..+......++ +.+++++||||+.+.....    ..+++.+      .+
T Consensus       164 VG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi------er  236 (424)
T PRK12297        164 VGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI------ER  236 (424)
T ss_pred             EcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH------hh
Confidence            69999999999999999874 56778888888887777776 7899999999998744322    2344333      47


Q ss_pred             CcEEEEEEeCCCC---CCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           76 IDVLLYADRLDAY---RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        76 ~d~vL~v~~~d~~---r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      +|++++|+++++.   ...+....+.+.|......-.-+|.+||+||+|+
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL  286 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL  286 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence            8999999887642   1223344566666654332234899999999997

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.53  E-value=9.6e-14  Score=128.66  Aligned_cols=113  Identities=24%  Similarity=0.318  Sum_probs=80.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|+|||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.++...-+. ........  ...+|++
T Consensus       221 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~--~~~aD~i  298 (449)
T PRK05291        221 AGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA--IEEADLV  298 (449)
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH--HHhCCEE
Confidence            69999999999999999887778888888888777777889999999999999754321111 01111111  2589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++.+. ..+..+..++..     ..  .+|+++|+||+|+.
T Consensus       299 l~VvD~s~-~~s~~~~~~l~~-----~~--~~piiiV~NK~DL~  334 (449)
T PRK05291        299 LLVLDASE-PLTEEDDEILEE-----LK--DKPVIVVLNKADLT  334 (449)
T ss_pred             EEEecCCC-CCChhHHHHHHh-----cC--CCCcEEEEEhhhcc
Confidence            99977764 334444444332     11  27999999999985

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.53  E-value=1.5e-13  Score=127.10  Aligned_cols=117  Identities=24%  Similarity=0.369  Sum_probs=87.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||+|+|+|.+...++..+++|..........++..+.+|||||+........  +.....+..-....+|+
T Consensus       179 vG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~  258 (435)
T PRK00093        179 IGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADV  258 (435)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCE
Confidence            6999999999999999998777888888888877666778899999999999976543322  11111111001257899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|++... ..+..+..++..+.+. +    +++++|+||+|+.
T Consensus       259 ~ilViD~~~-~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~  297 (435)
T PRK00093        259 VLLVIDATE-GITEQDLRIAGLALEA-G----RALVIVVNKWDLV  297 (435)
T ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHc-C----CcEEEEEECccCC
Confidence            999988775 4777888777766553 2    7999999999985

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.53  E-value=9.7e-14  Score=123.65  Aligned_cols=116  Identities=19%  Similarity=0.205  Sum_probs=82.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcC----cHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYV----NYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~----~~~~~~~i~~~l~~~~   75 (256)
                      ||.+|||||||+|+|.+... .+++++.+|..+......+++ ..++++||||+.+....    ...+++.+      .+
T Consensus       163 vG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi------er  235 (329)
T TIGR02729       163 VGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI------ER  235 (329)
T ss_pred             EcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH------Hh
Confidence            69999999999999998764 577778888888887777776 89999999999865432    23444444      37


Q ss_pred             CcEEEEEEeCCCCC---CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYR---VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r---~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++|+|+++++..   ..+....+.+.+......-..+|+++|+||+|+.
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~  286 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL  286 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence            89999998776431   1122334445554432211247999999999984

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01861 Rab6 Rab6 subfamily

Probab=99.53  E-value=2.8e-13  Score=107.63  Aligned_cols=111  Identities=17%  Similarity=0.185  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++..... +..+..+.+.......+++  ..+.+|||||...       +...+..++  ..+|+
T Consensus         6 iG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~--~~~~~   75 (161)
T cd01861           6 LGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-------FRSLIPSYI--RDSSV   75 (161)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--ccCCE
Confidence            6999999999999999986532 2223333344444445555  4689999999532       222233333  58899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+....+.+  .|+++|+||+|+.
T Consensus        76 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~  118 (161)
T cd01861          76 AVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLS  118 (161)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhcc
Confidence            999988876322223345566555544433  7999999999985

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01878 HflX HflX subfamily

Probab=99.52  E-value=1.8e-13  Score=113.62  Aligned_cols=118  Identities=19%  Similarity=0.163  Sum_probs=73.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-EEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... +......|..+......+.+. .+.+|||||+.+...  ....+.+...+ ....+|+
T Consensus        47 iG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~d~  123 (204)
T cd01878          47 VGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLEEVAEADL  123 (204)
T ss_pred             ECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHHHHHhcCCe
Confidence            699999999999999998642 333233344444444455554 899999999865321  12222221111 1247999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........+.+.+......+  .++++|+||+|+.
T Consensus       124 ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~  166 (204)
T cd01878         124 LLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLL  166 (204)
T ss_pred             EEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccC
Confidence            999988775332222333444454443233  7999999999985

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.52  E-value=1e-13  Score=120.15  Aligned_cols=112  Identities=20%  Similarity=0.270  Sum_probs=88.9

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc--CcH---HHHHHHHHhhhcCCC
Q 025189            2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY--VNY---QALELIKGFLLNKTI   76 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~--~~~---~~~~~i~~~l~~~~~   76 (256)
                      |.+|||||||++++++.++ .+.+++.||+.....+.+.++..+.+|||||+.|-..  .+.   +....++     .=.
T Consensus       175 G~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~-----hl~  248 (346)
T COG1084         175 GYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR-----HLA  248 (346)
T ss_pred             cCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH-----Hhc
Confidence            8999999999999999986 7888999999999999999999999999999998532  222   2222332     235


Q ss_pred             cEEEEEEeCCCCC-CCH-HHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYR-VDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r-~~~-~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|||+++.+... ++- ....+++.+...|.    .|+++|+||.|..
T Consensus       249 ~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~  293 (346)
T COG1084         249 GVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIA  293 (346)
T ss_pred             CeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEeccccc
Confidence            8999998777655 333 34568899999985    6899999999985

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.51  E-value=2e-13  Score=133.18  Aligned_cols=115  Identities=17%  Similarity=0.227  Sum_probs=88.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|...+.++..+++|........++++..+.+|||||+..... ....+.+....++  ..+|++
T Consensus       281 vG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~aD~i  358 (712)
T PRK09518        281 VGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--SLADAV  358 (712)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--HhCCEE
Confidence            6999999999999999988777788888888887777788999999999999874321 1222333333233  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |+|++... .++..+..+.+.+.+.     .+|+++|+||+|+.
T Consensus       359 L~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~  396 (712)
T PRK09518        359 VFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ  396 (712)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence            99977654 4677777787777653     28999999999974

>PRK11058 GTPase HflX; Provisional

Probab=99.50  E-value=3e-13  Score=124.33  Aligned_cols=117  Identities=17%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-EEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.+.+ +++..++|.++......+.+. .+.+|||||+...  ......+.+...+ ....+|+
T Consensus       203 VG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl~~~~~ADl  279 (426)
T PRK11058        203 VGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATLQETRQATL  279 (426)
T ss_pred             ECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHHHHhhcCCE
Confidence            699999999999999998865 555566777776666666554 8899999999542  1122222222222 2258999


Q ss_pred             EEEEEeCCCCCCCHHHHH-HHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQ-IIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~-~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|++.++.. ...+.. +.+.+.+....+  .|+++|+||+|+.
T Consensus       280 IL~VvDaS~~~-~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~  322 (426)
T PRK11058        280 LLHVVDAADVR-VQENIEAVNTVLEEIDAHE--IPTLLVMNKIDML  322 (426)
T ss_pred             EEEEEeCCCcc-HHHHHHHHHHHHHHhccCC--CCEEEEEEcccCC
Confidence            99998876532 223322 233344332222  7999999999985

>cd04171 SelB SelB subfamily

Probab=99.49  E-value=5.1e-13  Score=106.17  Aligned_cols=109  Identities=20%  Similarity=0.242  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC--CCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~--~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|+|.+........  ..++|.........+. +..+.+|||||..+       +...+....  .++|
T Consensus         6 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~--~~ad   76 (164)
T cd04171           6 AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGA--GGID   76 (164)
T ss_pred             EecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhh--hcCC
Confidence            5999999999999999864222211  1234444444445555 78999999999732       222222222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|++++.. ........+..+.. .+.   +|+++|+||+|+.
T Consensus        77 ~ii~V~d~~~~-~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~  117 (164)
T cd04171          77 LVLLVVAADEG-IMPQTREHLEILEL-LGI---KRGLVVLTKADLV  117 (164)
T ss_pred             EEEEEEECCCC-ccHhHHHHHHHHHH-hCC---CcEEEEEECcccc
Confidence            99999887642 22333334443332 231   4899999999984

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.49  E-value=3.2e-13  Score=131.80  Aligned_cols=117  Identities=20%  Similarity=0.222  Sum_probs=87.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc--HHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN--YQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~--~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.+...++..+++|.........++|.++.+|||||+.......  .++...++.......+|+
T Consensus       456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~adv  535 (712)
T PRK09518        456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSEL  535 (712)
T ss_pred             ECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCE
Confidence            699999999999999999876677788888887777778899999999999987532221  233333322112268999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|++.+. ..+..+..++..+.+.   +  +++++|+||+|+.
T Consensus       536 vilViDat~-~~s~~~~~i~~~~~~~---~--~piIiV~NK~DL~  574 (712)
T PRK09518        536 ALFLFDASQ-PISEQDLKVMSMAVDA---G--RALVLVFNKWDLM  574 (712)
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHHHc---C--CCEEEEEEchhcC
Confidence            999988775 5677777777666543   2  7999999999985

>cd04140 ARHI_like ARHI subfamily

Probab=99.48  E-value=3.7e-13  Score=107.91  Aligned_cols=112  Identities=21%  Similarity=0.141  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEe--eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR--SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++....  ..+.++.........  ......+.+|||||..........   .+      ..+|+
T Consensus         7 vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---~~------~~~~~   75 (165)
T cd04140           7 FGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRL---SI------SKGHA   75 (165)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHH---Hh------hcCCE
Confidence            699999999999999987531  122222221111112  223457889999998653211111   11      57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCc-ccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~-~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+.+..+.. ...|+++|.||+|+.
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (165)
T cd04140          76 FILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES  121 (165)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence            999999886433334456667676665432 237899999999985

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01868 Rab11_like Rab11-like

Probab=99.48  E-value=4.4e-13  Score=107.14  Aligned_cols=112  Identities=15%  Similarity=0.124  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++....... .++.+..........++  ..+.+|||||....       ......++  ..+++
T Consensus         9 vG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~--~~~~~   78 (165)
T cd01868           9 IGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY-------RAITSAYY--RGAVG   78 (165)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHHH--CCCCE
Confidence            699999999999999987642222 22333233333444555  46789999996421       11112222  57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++......-.++++.+.+....+  .|+++|.||+|+..
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~  122 (165)
T cd01868          79 ALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRH  122 (165)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence            999988875222222234555555554333  68999999999853

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04136 Rap_like Rap-like subfamily

Probab=99.47  E-value=6.4e-13  Score=105.70  Aligned_cols=111  Identities=16%  Similarity=0.134  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+...  ...+.+++.........+++  ..+.+|||||..........+       +  .+.|+
T Consensus         7 ~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~~~~   75 (163)
T cd04136           7 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLY-------I--KNGQG   75 (163)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHH-------h--hcCCE
Confidence            69999999999999998753  22333343333333344555  456789999986443221111       1  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+.+.... ...|+++|+||+|+.
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~  119 (163)
T cd04136          76 FVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLE  119 (163)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence            99998887633223334455566554321 137899999999985

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.47  E-value=5.4e-13  Score=123.85  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=81.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~~   76 (256)
                      ||.+|||||||+|+|.+... .+++++.+|..+......+.+.+++++||||+.+.....    .++++.+      ..+
T Consensus       165 VG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi------era  237 (500)
T PRK12296        165 VGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI------ERC  237 (500)
T ss_pred             EEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH------Hhc
Confidence            69999999999999999865 567888889888888888888999999999997654322    2233333      478


Q ss_pred             cEEEEEEeCCCC---C-CCHHHHHHHHHHHhhcC---------CcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAY---R-VDDLDRQIIKAVTGTFG---------KQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~---r-~~~~~~~~~~~l~~~~g---------~~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|+++++.   + ..+....+.+.|.....         .-..+|.++|+||+|+.
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~  297 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP  297 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence            999999776531   1 11122233344544321         11248999999999984

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.47  E-value=1.6e-12  Score=106.95  Aligned_cols=114  Identities=21%  Similarity=0.242  Sum_probs=73.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhh-cCC
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLL-NKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~-~~~   75 (256)
                      +|.+|+|||||+|+|++.. .+.++...++|.....+.  . +.++.+|||||+.......   ..+...+..++. ...
T Consensus        30 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (196)
T PRK00454         30 AGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTREN  106 (196)
T ss_pred             EcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCcc
Confidence            6999999999999999975 444555455555444332  2 4689999999987643222   223223333332 235


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+++++|++.+. +++..+..+.+.+...     ..++++++||+|+.
T Consensus       107 ~~~~~~v~d~~~-~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~  148 (196)
T PRK00454        107 LKGVVLLIDSRH-PLKELDLQMIEWLKEY-----GIPVLIVLTKADKL  148 (196)
T ss_pred             ceEEEEEEecCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence            688888866554 4556665666655432     27899999999984

>cd01864 Rab19 Rab19 subfamily

Probab=99.46  E-value=5.5e-13  Score=106.77  Aligned_cols=112  Identities=16%  Similarity=0.150  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||++++.+........ +..+.........+++  ..+.+|||||...       +......++  ..+|+
T Consensus         9 vG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~--~~~d~   78 (165)
T cd01864           9 IGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYY--RSANG   78 (165)
T ss_pred             ECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--ccCCE
Confidence            6999999999999998765321111 1111222333445555  4789999999532       111222222  57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........++..+......+  .|+++|.||+|+..
T Consensus        79 ~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~  122 (165)
T cd01864          79 AIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEE  122 (165)
T ss_pred             EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence            999988876322233456667666543333  68999999999853

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.46  E-value=6.6e-13  Score=105.79  Aligned_cols=112  Identities=20%  Similarity=0.198  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++....  ..+.++ +..........+  ...+.+|||||....       ......++  .++|
T Consensus         6 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~d   74 (168)
T cd04119           6 MGNSGVGKSCIIKRYCEGRFV--SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-------LEVRNEFY--KDTQ   74 (168)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-------HHHHHHHh--ccCC
Confidence            699999999999999998642  122222 111112223333  357789999997432       11222222  6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCC---cccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGK---QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~---~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+....+++.+.+..+.   ....|+++|.||+|+.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  123 (168)
T cd04119          75 GVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT  123 (168)
T ss_pred             EEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence            999998887532223344566666665542   1237899999999985

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.46  E-value=7.5e-13  Score=115.39  Aligned_cols=117  Identities=22%  Similarity=0.373  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-CC------CCccee--EEEEeeeCCe--EEEEEeCCCCCCCCcCc---HHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS-FQ------SEALRP--VMVSRSKGGF--TLNIIDTPGLVEAGYVN---YQALEL   66 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~-~~------~~t~~~--~~~~~~~~g~--~v~liDTPG~~~~~~~~---~~~~~~   66 (256)
                      +|.+|+|||||||+|++........ .+      ..+...  ......-+|.  +++|+||||+++.-...   ..+...
T Consensus        10 vG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~y   89 (281)
T PF00735_consen   10 VGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDY   89 (281)
T ss_dssp             EECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHH
Confidence            5999999999999999986544321 11      011111  1223333444  67899999999853211   111111


Q ss_pred             H----HHhh-----------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           67 I----KGFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        67 i----~~~l-----------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |    ..++           .+.++|++||.++.+..++.+.|.+.++.|.+.      .++|-|+.|+|..
T Consensus        90 I~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~l  155 (281)
T PF00735_consen   90 IESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTL  155 (281)
T ss_dssp             HHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS
T ss_pred             HHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEeccccc
Confidence            1    1111           135689999998888777999999999988876      6999999999985

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.46  E-value=9.9e-13  Score=104.70  Aligned_cols=111  Identities=20%  Similarity=0.177  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||+|++++...  ++...+++.........+++  ..+.+|||||..+....       ...++  .+.|+
T Consensus         8 ~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~--~~~~~   76 (164)
T cd04145           8 VGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAM-------REQYM--RTGEG   76 (164)
T ss_pred             ECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHH-------HHHHH--hhCCE
Confidence            69999999999999998753  33333443333333344555  46789999997644321       11222  47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++..-.+....++..+.+.... ...|+++|+||+|+.
T Consensus        77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~  120 (164)
T cd04145          77 FLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLE  120 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccc
Confidence            99998887633112233445555544321 126999999999985

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01866 Rab2 Rab2 subfamily

Probab=99.46  E-value=8.8e-13  Score=106.10  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++........ ...+..........++  ..+.+|||||...       +......++  ..+|+
T Consensus        10 vG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~--~~~d~   79 (168)
T cd01866          10 IGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYY--RGAAG   79 (168)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--ccCCE
Confidence            6999999999999999876422221 1112222222233343  5789999999532       111222223  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++......-..++..+.+....+  .|+++|.||.|+.+
T Consensus        80 il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~  123 (168)
T cd01866          80 ALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLES  123 (168)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence            999988875322233344555555543333  78999999999853

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.45  E-value=4e-13  Score=107.38  Aligned_cols=107  Identities=15%  Similarity=0.069  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee---CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|+||||++|+|++..... ....++|..........   .+..+.+|||||....       ......++  ..+|
T Consensus         6 iG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~--~~~d   75 (168)
T cd01887           6 MGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGA--SLTD   75 (168)
T ss_pred             EecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHH--hhcC
Confidence            6999999999999999876432 22233444333334444   3778999999997432       11111122  5799


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|++++.. ........+..+.. .+    .|+++|+||+|+.
T Consensus        76 ~il~v~d~~~~-~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~  115 (168)
T cd01887          76 IAILVVAADDG-VMPQTIEAIKLAKA-AN----VPFIVALNKIDKP  115 (168)
T ss_pred             EEEEEEECCCC-ccHHHHHHHHHHHH-cC----CCEEEEEEceecc
Confidence            99999887752 33444445554443 22    7899999999984

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04144 Ras2 Ras2 subfamily

Probab=99.44  E-value=1e-12  Score=108.13  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=70.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+....  ..+.+++.........+++.  .+.+|||||........       ..++  .++|+
T Consensus         5 vG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~ad~   73 (190)
T cd04144           5 LGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALR-------DQWI--REGEG   73 (190)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHH-------HHHH--HhCCE
Confidence            699999999999999976532  22333333222233345554  47889999974332111       1122  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|+++++....+.-..+++.+...... ....|+++|+||+|+.
T Consensus        74 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~  119 (190)
T cd04144          74 FILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV  119 (190)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence            99999887632223334566666655431 1237899999999985

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.44  E-value=1.1e-12  Score=105.09  Aligned_cols=111  Identities=13%  Similarity=0.104  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++.+....  ..+.++.. .........++  ..+.+|||||......       ....++  .+.|
T Consensus         7 ~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~-------~~~~~~--~~~~   75 (165)
T cd01865           7 IGNSSVGKTSFLFRYADDSFT--SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT-------ITTAYY--RGAM   75 (165)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHc--cCCc
Confidence            699999999999999987631  22222211 11112223333  5789999999643211       111112  6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++++|+++++....+.-..+++.+.+.....  .|+++|.||+|+.+
T Consensus        76 ~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~  120 (165)
T cd01865          76 GFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMED  120 (165)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCc
Confidence            9999988875322222344555665544333  68999999999853

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04142 RRP22 RRP22 subfamily

Probab=99.44  E-value=2.4e-12  Score=106.87  Aligned_cols=119  Identities=13%  Similarity=0.113  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|||||||+|++++....  ..+.+++ .........++|  ..+.+|||||..+... ...++.......+  ..+
T Consensus         6 vG~~~vGKTsLi~~~~~~~f~--~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~--~~a   81 (198)
T cd04142           6 LGAPGVGKTAIVRQFLAQEFP--EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL--RNS   81 (198)
T ss_pred             ECCCCCcHHHHHHHHHcCCCC--cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh--ccC
Confidence            699999999999999987642  2222232 222223345666  4678999999865321 2222222111112  589


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcC-CcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g-~~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|+++++..-.+....+.+.+.+... .....|+++|.||+|+.
T Consensus        82 d~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~  129 (198)
T cd04142          82 RAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ  129 (198)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence            999999888753222223445555555431 11237999999999985

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=99.44  E-value=1.5e-12  Score=103.07  Aligned_cols=111  Identities=19%  Similarity=0.168  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||+|++++....... ...++...........+  ..+.+|||||......       ....++  ..+|+
T Consensus         6 ~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~--~~~~~   75 (162)
T cd04123           6 LGEGRVGKTSLVLRYVENKFNEKH-ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-------LGPIYY--RDADG   75 (162)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCc-CCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-------hhHHHh--ccCCE
Confidence            699999999999999987653211 11221222222233333  4688999999543211       111122  57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+++.+.+....+  .++++|+||+|+.
T Consensus        76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~D~~  118 (162)
T cd04123          76 AILVYDITDADSFQKVKKWIKELKQMRGNN--ISLVIVGNKIDLE  118 (162)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence            999988876332223344556666665543  7999999999985

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00154 Rab Rab family

Probab=99.44  E-value=1.8e-12  Score=101.71  Aligned_cols=111  Identities=14%  Similarity=0.087  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+||||||++|++++....... .+..+..........  .+..+.+|||||...       +......++  ..+|+
T Consensus         6 ~G~~~~GKStl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~--~~~d~   75 (159)
T cd00154           6 IGDSGVGKTSLLLRFVDGKFDENY-KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY--RGAHG   75 (159)
T ss_pred             ECCCCCCHHHHHHHHHhCcCCCcc-CCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--cCCCE
Confidence            699999999999999998653321 111111222222333  346789999999732       112222233  57999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++..-.+....++..+......+  .|+++|+||+|+.
T Consensus        76 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~  118 (159)
T cd00154          76 AILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLE  118 (159)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEccccc
Confidence            999988875221222334555555554223  7999999999985

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.44  E-value=1.4e-12  Score=104.35  Aligned_cols=111  Identities=15%  Similarity=0.186  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.... ....++.+..........++  ..+.+|||||....       ......++  ..+|+
T Consensus         8 ~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~~~~   77 (166)
T cd01869           8 IGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYY--RGAHG   77 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHh--CcCCE
Confidence            699999999999999987542 22112222222223344454  46789999996422       11112222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++......-..+++.+.+....+  .++++|.||+|+.
T Consensus        78 ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~  120 (166)
T cd01869          78 IIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLT  120 (166)
T ss_pred             EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcc
Confidence            999988875321222234555555543233  6899999999985

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04113 Rab4 Rab4 subfamily

Probab=99.44  E-value=1.3e-12  Score=103.97  Aligned_cols=112  Identities=14%  Similarity=0.141  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....... .+..+.........+++  ..+.+|||||....       ......++  ..+|+
T Consensus         6 ~G~~~vGKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~--~~~~~   75 (161)
T cd04113           6 IGSSGTGKSCLLHRFVENKFKEDS-QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-------RSVTRSYY--RGAAG   75 (161)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCEEEEEEEEECcchHHH-------HHhHHHHh--cCCCE
Confidence            699999999999999987642211 11111222222334444  46789999997432       11222222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++......-..++..+......+  .|+++|+||+|+..
T Consensus        76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~  119 (161)
T cd04113          76 ALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLAD  119 (161)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcch
Confidence            999988886332223345555555554444  68999999999853

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04120 Rab12 Rab12 subfamily

Probab=99.44  E-value=1.5e-12  Score=108.36  Aligned_cols=110  Identities=16%  Similarity=0.195  Sum_probs=72.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+||||||+++++.....  ...+.++ +.........++|  ..+.+|||+|......       ....++  .++|
T Consensus         6 lG~~gVGKTSli~r~~~~~f--~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~-------l~~~y~--~~ad   74 (202)
T cd04120           6 IGSRGVGKTSLMRRFTDDTF--CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-------ITSAYY--RSAK   74 (202)
T ss_pred             ECcCCCCHHHHHHHHHhCCC--CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH-------HHHHHh--cCCC
Confidence            69999999999999997653  2222222 2233333455666  5778999999753321       112222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+.-..+++.+.+...++  .++++|.||+|+.
T Consensus        75 ~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~  118 (202)
T cd04120          75 GIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCE  118 (202)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccc
Confidence            9999999987432233345666666654444  7899999999985

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.43  E-value=1e-12  Score=104.62  Aligned_cols=111  Identities=15%  Similarity=0.103  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++....... .+............++  +..+.+|||||....       ......++  .++|+
T Consensus         7 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~~~~   76 (163)
T cd01860           7 LGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY-------RSLAPMYY--RGAAA   76 (163)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHh--ccCCE
Confidence            699999999999999998743211 1111111112233344  456789999995321       11111122  57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++..-......++..+......+  .++++|.||+|+.
T Consensus        77 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~  119 (163)
T cd01860          77 AIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLE  119 (163)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence            999988775332233445666666654333  7899999999985

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04176 Rap2 Rap2 subgroup

Probab=99.43  E-value=2.2e-12  Score=102.91  Aligned_cols=111  Identities=17%  Similarity=0.128  Sum_probs=71.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++++....  ....++...........+|.  .+.+|||||..........+   +      .++|+
T Consensus         7 ~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---~------~~ad~   75 (163)
T cd04176           7 LGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLY---I------KNGQG   75 (163)
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHH---H------hhCCE
Confidence            699999999999999987542  22233333333334455554  56789999975443222221   1      47999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.+....-..+++.+.+.... ...|+++|+||+|+.
T Consensus        76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~  119 (163)
T cd04176          76 FIVVYSLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLE  119 (163)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccch
Confidence            99999888643223334555666655321 237999999999985

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.43  E-value=1.6e-12  Score=104.41  Aligned_cols=111  Identities=16%  Similarity=0.207  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++.+....  ..+.++ +.........+++  ..+.+|||||.....       .....++  ..+|
T Consensus         9 vG~~~~GKSsl~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~--~~ad   77 (167)
T cd01867           9 IGDSGVGKSCLLLRFSEDSFN--PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYY--RGAM   77 (167)
T ss_pred             ECCCCCCHHHHHHHHhhCcCC--cccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHh--CCCC
Confidence            699999999999999987531  222222 1122222334454  467899999964321       1112222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++++|+++++......-.+++..+......+  .|+++|.||+|+.+
T Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~  122 (167)
T cd01867          78 GIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEE  122 (167)
T ss_pred             EEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence            9999988875332222234556565543333  68999999999853

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.43  E-value=1.3e-12  Score=105.31  Aligned_cols=109  Identities=18%  Similarity=0.207  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+....  ..+.++...........++.  .+.+|||||..+.......+         ..+.|+
T Consensus         4 ~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---------~~~~d~   72 (174)
T smart00174        4 VGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLS---------YPDTDV   72 (174)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhh---------cCCCCE
Confidence            699999999999999987542  22222222222223344554  57899999976543221111         158999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+.+..+ +  .|+++|.||+|+.
T Consensus        73 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~  115 (174)
T smart00174       73 FLICFSVDSPASFENVKEKWYPEVKHFCP-N--TPIILVGTKLDLR  115 (174)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEecChhhh
Confidence            99999887632 32222346666666543 2  7999999999985

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=8.7e-13  Score=119.52  Aligned_cols=122  Identities=20%  Similarity=0.241  Sum_probs=87.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|++|||||||+|+|..++.+.|++.+++|++......+++|+++.++||.|+.+.....-+.+..-+..-....+|+++
T Consensus       274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~  353 (531)
T KOG1191|consen  274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVIL  353 (531)
T ss_pred             EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEE
Confidence            69999999999999999999999999999999999999999999999999999983222222221111111236899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhh---cCC----cccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGT---FGK----QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~---~g~----~~~~~~ivv~Tk~D~~  123 (256)
                      +|++... ..+.++..+.+.+...   ...    .-..+.+++.||.|+.
T Consensus       354 ~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~  402 (531)
T KOG1191|consen  354 LVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV  402 (531)
T ss_pred             EEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence            9977643 3344555544444433   110    1136788888998875

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.43  E-value=1.6e-12  Score=103.40  Aligned_cols=112  Identities=16%  Similarity=0.129  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.... ....+..+..........++  ..+.+|||||...       +......++  ..+|+
T Consensus         6 ~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~--~~~d~   75 (164)
T smart00175        6 IGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYY--RGAVG   75 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--CCCCE
Confidence            699999999999999987642 12112222222333445555  4778999999532       112222233  57999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++.+..-.+.-.+++..+....+.+  .|+++|.||+|+..
T Consensus        76 ~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~  119 (164)
T smart00175       76 ALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLED  119 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhccc
Confidence            999988764221122233555555444333  79999999999753

Rab GTPases are implicated in vesicle trafficking.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.43  E-value=1.2e-12  Score=104.00  Aligned_cols=110  Identities=17%  Similarity=0.176  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeee----CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSK----GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~----~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (256)
                      +|.+|+|||||+|++++....  ....++ +.........+    .+..+.+|||||..+.       ......++  .+
T Consensus         6 vG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~   74 (162)
T cd04106           6 VGNGNVGKSSMIQRFVKGIFT--KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-------DAITKAYY--RG   74 (162)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-------HHhHHHHh--cC
Confidence            699999999999999987532  122222 11111122222    3467899999995322       11122222  68


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      .|++++|+++++....+....+++.+.+... +  .|+++|+||+|+..
T Consensus        75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~  120 (162)
T cd04106          75 AQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLD  120 (162)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhccc
Confidence            9999999888763322233345555544332 2  78999999999853

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.43  E-value=2.9e-12  Score=108.99  Aligned_cols=83  Identities=19%  Similarity=0.271  Sum_probs=60.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|+|||||+|+|+|... .++.++.+|..+......+++..+.+|||||+.+...........+..+  ...+|+++
T Consensus         6 vG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--~~~ad~il   82 (233)
T cd01896           6 VGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV--ARTADLIL   82 (233)
T ss_pred             ECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh--hccCCEEE
Confidence            69999999999999999864 4666777777777777788999999999999876542222211111111  25899999


Q ss_pred             EEEeCC
Q 025189           81 YADRLD   86 (256)
Q Consensus        81 ~v~~~d   86 (256)
                      +|++.+
T Consensus        83 ~V~D~t   88 (233)
T cd01896          83 MVLDAT   88 (233)
T ss_pred             EEecCC
Confidence            996654

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK04213 GTP-binding protein; Provisional

Probab=99.42  E-value=2.1e-12  Score=106.94  Aligned_cols=113  Identities=16%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhh--cC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLL--NK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~--~~   74 (256)
                      +|.+|||||||+|+|+|... .++..+++|..+...  .++  .+.+|||||++......    +.+...+..++.  ..
T Consensus        15 ~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (201)
T PRK04213         15 VGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNAD   89 (201)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhh
Confidence            69999999999999999763 455455555544332  233  58999999986543322    222222222321  24


Q ss_pred             CCcEEEEEEeCCCCC-C---------CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAYR-V---------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r-~---------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .++++++|++.+... +         ...+..+++.+...   +  .|+++|+||+|+.
T Consensus        90 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~p~iiv~NK~Dl~  143 (201)
T PRK04213         90 RILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL---G--IPPIVAVNKMDKI  143 (201)
T ss_pred             hheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc---C--CCeEEEEECcccc
Confidence            678999996654310 1         11233444444432   2  7999999999984

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.42  E-value=1.3e-12  Score=104.51  Aligned_cols=111  Identities=12%  Similarity=0.047  Sum_probs=66.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc---cCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV---NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~---~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|+|.+......   .....+|.........+++..+.+|||||..+..       .....++  .++|
T Consensus         5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~~   75 (167)
T cd04160           5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------SLWDKYY--AECH   75 (167)
T ss_pred             EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHh--CCCC
Confidence            69999999999999987532100   1111223333334556778999999999985422       1112222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|++.++..   ........+.+....  ....|+++|+||+|+.
T Consensus        76 ~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~  120 (167)
T cd04160          76 AIIYVIDSTDRE---RFEESKSALEKVLRNEALEGVPLLILANKQDLP  120 (167)
T ss_pred             EEEEEEECchHH---HHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence            999997765421   112222222222221  1127999999999984

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04112 Rab26 Rab26 subfamily

Probab=99.42  E-value=1.8e-12  Score=106.71  Aligned_cols=111  Identities=16%  Similarity=0.152  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|.+.+... ..+...+++. ........+++  ..+.||||||....       ......++  .++|
T Consensus         6 vG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~ad   75 (191)
T cd04112           6 LGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF-------RSVTHAYY--RDAH   75 (191)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-------HHhhHHHc--cCCC
Confidence            69999999999999998753 2222222222 22222234444  46789999995321       11112222  5799


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|++++.....+.-..++..+.+....+  .|+++|+||+|+.
T Consensus        76 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~  119 (191)
T cd04112          76 ALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMS  119 (191)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccch
Confidence            9999988875321222344566666654433  6899999999985

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=99.42  E-value=2.1e-12  Score=103.22  Aligned_cols=111  Identities=17%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+++....  ...+.+++.........+++.  .+.+|||||..........+       +  .+.|+
T Consensus         7 ~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~~d~   75 (164)
T cd04175           7 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLY-------M--KNGQG   75 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHH-------H--hhCCE
Confidence            69999999999999986532  233344444333334455544  56799999985433221111       1  57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~  119 (164)
T cd04175          76 FVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLE  119 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcch
Confidence            9999888753322333445555554322 1126899999999985

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.42  E-value=3.2e-12  Score=105.03  Aligned_cols=108  Identities=15%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc-----------------cCCCCCcceeEEEEee--eCCeEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV-----------------NSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~-----------------~~~~~~t~~~~~~~~~--~~g~~v~liDTPG~~~~~~~~~   61 (256)
                      +|..|+|||||+++|++......                 ......|.........  ..++.++++||||..       
T Consensus         9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~-------   81 (188)
T PF00009_consen    9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE-------   81 (188)
T ss_dssp             EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-------
T ss_pred             ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-------
Confidence            58999999999999997532100                 0012334445555566  889999999999974       


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+...+...+  ..+|++++|++... .......+.++.+...-     .|+++|+||+|+.
T Consensus        82 ~f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~  135 (188)
T PF00009_consen   82 DFIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILRELG-----IPIIVVLNKMDLI  135 (188)
T ss_dssp             HHHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT------SEEEEEETCTSS
T ss_pred             ceeeccccee--cccccceeeeeccc-ccccccccccccccccc-----cceEEeeeeccch
Confidence            2333443333  58999999977765 36777777777776653     6799999999985

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.42  E-value=2.4e-12  Score=102.65  Aligned_cols=111  Identities=18%  Similarity=0.225  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+....  ....+++..........++  ..+.+|||||..+.....       ..++  ...|+
T Consensus         6 ~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~-------~~~~--~~~~~   74 (164)
T smart00173        6 LGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMR-------DQYM--RTGEG   74 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHH-------HHHH--hhCCE
Confidence            699999999999999987632  2223333333333344554  467799999976532111       1122  47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+.+.+.+..... -.|+++|.||+|+.
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~pii~v~nK~Dl~  118 (164)
T smart00173       75 FLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLE  118 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccc
Confidence            999988875322222234445554443321 36899999999985

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd00157 Rho Rho (Ras homology) family

Probab=99.42  E-value=1e-12  Score=105.31  Aligned_cols=110  Identities=18%  Similarity=0.203  Sum_probs=70.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....  ....++............  ...+.+|||||..+.........         ..+|+
T Consensus         6 ~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~---------~~~~~   74 (171)
T cd00157           6 VGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSY---------PNTDV   74 (171)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhc---------CCCCE
Confidence            699999999999999998641  111122221122222233  45689999999875432221111         57899


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.. +......++..+....+   -.|+++|+||+|+.+
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~  118 (171)
T cd00157          75 FLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRD  118 (171)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhh
Confidence            99998887622 44444556666655543   289999999999853

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.41  E-value=2.1e-12  Score=104.94  Aligned_cols=109  Identities=21%  Similarity=0.296  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++.+...  ...+.++..........+++  ..+.+|||||..........+       +  .++|+
T Consensus         7 vG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~a~~   75 (175)
T cd01874           7 VGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS-------Y--PQTDV   75 (175)
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhh-------c--ccCCE
Confidence            69999999999999998653  23333333222222334555  567899999986543222111       1  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+++.+.+..+ +  .|+++|.||+|+.
T Consensus        76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~  118 (175)
T cd01874          76 FLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLR  118 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhh
Confidence            99999988633 32222346666655432 2  7999999999984

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.41  E-value=2.5e-12  Score=101.78  Aligned_cols=111  Identities=19%  Similarity=0.197  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  ...+.+++.........+++.  .+.+|||||......       ....++  ...|+
T Consensus         7 iG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------l~~~~~--~~~~~   75 (162)
T cd04138           7 VGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM--RTGEG   75 (162)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH-------HHHHHH--hcCCE
Confidence            69999999999999998753  223333333333333445554  467899999754221       111222  47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+.+.... ...|+++|+||+|+.
T Consensus        76 ~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~  119 (162)
T cd04138          76 FLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLA  119 (162)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence            99998888632112223344555544321 127999999999985

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd00876 Ras Ras family

Probab=99.41  E-value=1.9e-12  Score=102.31  Aligned_cols=112  Identities=18%  Similarity=0.190  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++..  ..+...+++..........++  ..+.+||+||..+..       .....++  .+.|+
T Consensus         5 ~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~~~~~   73 (160)
T cd00876           5 LGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYI--RQGDG   73 (160)
T ss_pred             ECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHH--hcCCE
Confidence            6999999999999999876  234444444444444445553  567899999975421       1112222  47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........++..+....+. ...|+++|+||+|...
T Consensus        74 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~  118 (160)
T cd00876          74 FILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN  118 (160)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence            99998887532222334455555555441 1289999999999853

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN03118 Rab family protein; Provisional

Probab=99.41  E-value=2.4e-12  Score=107.68  Aligned_cols=112  Identities=19%  Similarity=0.176  Sum_probs=65.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.......  +..+.........+++  ..+.+|||||.........       .++  ..+|+
T Consensus        20 vG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~~--~~~d~   88 (211)
T PLN03118         20 IGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS-------SYY--RNAQG   88 (211)
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH-------HHH--hcCCE
Confidence            699999999999999987642211  1111122222334444  4778999999754322111       122  58899


Q ss_pred             EEEEEeCCCCCCCHHHHH-HHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQ-IIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~-~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+.... +...+. .+......++++|.||+|+..
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~  134 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRES  134 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccc
Confidence            999988875221111112 222232 222222258899999999853

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.40  E-value=5e-12  Score=100.27  Aligned_cols=114  Identities=19%  Similarity=0.254  Sum_probs=72.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhc-CC
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLLN-KT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~-~~   75 (256)
                      +|.+|+|||||+|+|++.. ....+...++|.....+  ..++ .+++|||||+++....   .+.+...+..++.. ..
T Consensus         5 ~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (170)
T cd01876           5 AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN   81 (170)
T ss_pred             EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--EccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence            6999999999999999533 22333333444433322  2233 8899999999875332   12233334444432 35


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .++++++++.+. .....+..+++.+... +    .++++|+||+|+.
T Consensus        82 ~~~~~~v~d~~~-~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~  123 (170)
T cd01876          82 LKGVVLLIDSRH-GPTEIDLEMLDWLEEL-G----IPFLVVLTKADKL  123 (170)
T ss_pred             hhEEEEEEEcCc-CCCHhHHHHHHHHHHc-C----CCEEEEEEchhcC
Confidence            788989976654 2345666666666654 2    6899999999984

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.40  E-value=3.2e-12  Score=102.33  Aligned_cols=113  Identities=21%  Similarity=0.197  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++++...  .+.+.+++.........+++.  .+.+|||||.......  .....+      ..+|+
T Consensus         5 vG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~------~~~d~   74 (165)
T cd04146           5 LGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--QLERSI------RWADG   74 (165)
T ss_pred             ECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--hHHHHH------HhCCE
Confidence            69999999999999987542  233333332222333445554  5789999998742111  111222      47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+++.+.+........|+++|.||+|+.
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  119 (165)
T cd04146          75 FVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL  119 (165)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence            999988875322222344555555543111127899999999974

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04122 Rab14 Rab14 subfamily

Probab=99.40  E-value=3.6e-12  Score=102.15  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++.+...  ....+++. ..........++  ..+.+|||||....       ......++  .++|
T Consensus         8 iG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~~   76 (166)
T cd04122           8 IGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF-------RAVTRSYY--RGAA   76 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh--cCCC
Confidence            69999999999999998753  22222222 111122233444  46789999996422       11122222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++++|+++++....+.-..+++.+......+  .++++|.||+|+..
T Consensus        77 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~  121 (166)
T cd04122          77 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEA  121 (166)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence            9999988876322222334555554443333  68999999999853

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.40  E-value=2e-12  Score=121.65  Aligned_cols=118  Identities=19%  Similarity=0.288  Sum_probs=89.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCC--cCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~--~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+||||||++|+|+|.+. .++++++.|.+-......+.|..+.++|+||.++-.  ..++.+.   ++++.+..+|+
T Consensus         9 vGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Va---r~~ll~~~~D~   84 (653)
T COG0370           9 VGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVA---RDFLLEGKPDL   84 (653)
T ss_pred             ecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHH---HHHHhcCCCCE
Confidence            69999999999999999976 799999999999999999999999999999999853  2333332   45566689999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCch
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNY  130 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~  130 (256)
                      ++-|  +|+..+..+-.-.+ ++.+. |    .|+++++|.+|..+.++..+
T Consensus        85 ivnV--vDAtnLeRnLyltl-QLlE~-g----~p~ilaLNm~D~A~~~Gi~I  128 (653)
T COG0370          85 IVNV--VDATNLERNLYLTL-QLLEL-G----IPMILALNMIDEAKKRGIRI  128 (653)
T ss_pred             EEEE--cccchHHHHHHHHH-HHHHc-C----CCeEEEeccHhhHHhcCCcc
Confidence            9999  66644433322222 33333 2    78999999999875555433

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.40  E-value=4.3e-12  Score=102.81  Aligned_cols=111  Identities=17%  Similarity=0.141  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++.+.+....  ....++..........++|  ..+.+|||||..+.....       ..++  .+.|+
T Consensus         8 vG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~-------~~~~--~~~d~   76 (172)
T cd04141           8 LGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMR-------DQYM--RCGEG   76 (172)
T ss_pred             ECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHh-------HHHh--hcCCE
Confidence            699999999999999987532  2222332222223345556  467899999986432211       1122  57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+.+.+.+.... ...|+++|.||+|+.
T Consensus        77 ~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~-~~~piilvgNK~Dl~  120 (172)
T cd04141          77 FIICYSVTDRHSFQEASEFKKLITRVRLT-EDIPLVLVGNKVDLE  120 (172)
T ss_pred             EEEEEECCchhHHHHHHHHHHHHHHhcCC-CCCCEEEEEEChhhh
Confidence            99999998743222233455555554221 127999999999984

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04124 RabL2 RabL2 subfamily

Probab=99.40  E-value=3.4e-12  Score=102.03  Aligned_cols=109  Identities=13%  Similarity=0.051  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||++++++......  ..++. ..........++  ..+.+|||||......       ....++  .+.|
T Consensus         6 vG~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~--~~~d   74 (161)
T cd04124           6 LGDSAVGKSKLVERFLMDGYEPQ--QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT-------MHASYY--HKAH   74 (161)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCC--cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHHHh--CCCC
Confidence            69999999999999998653211  11111 111122233443  4678999999753221       112222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|+|+++++.........++..+.+...   ..|+++|+||+|+.
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~  117 (161)
T cd04124          75 ACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD  117 (161)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence            99999888753222233456666665432   27999999999973

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.39  E-value=2.1e-12  Score=105.74  Aligned_cols=107  Identities=12%  Similarity=0.162  Sum_probs=67.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+||||||++|.+.+.....+    .+|..+......+++.++.+|||||.....       .....++  .++|+++
T Consensus        23 vG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~--~~ad~ii   89 (184)
T smart00178       23 LGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQAR-------RLWKDYF--PEVNGIV   89 (184)
T ss_pred             ECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--CCCCEEE
Confidence            69999999999999999754322    123333444556778899999999975321       1122222  6899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~  123 (256)
                      ||++..+..   ........+.+.+..  ..-.|+++|+||+|+.
T Consensus        90 ~vvD~~~~~---~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~  131 (184)
T smart00178       90 YLVDAYDKE---RFAESKRELDALLSDEELATVPFLILGNKIDAP  131 (184)
T ss_pred             EEEECCcHH---HHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence            997765421   111122222222221  0127899999999983

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04117 Rab15 Rab15 subfamily

Probab=99.39  E-value=4.9e-12  Score=101.16  Aligned_cols=111  Identities=14%  Similarity=0.163  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++.+++.... ....+............+++  ..+.+|||||......       ....+.  ..+|+
T Consensus         6 vG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~--~~~~~   75 (161)
T cd04117           6 IGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-------ITKQYY--RRAQG   75 (161)
T ss_pred             ECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-------hHHHHh--cCCcE
Confidence            699999999999999987642 11111112222223344555  4678999999643221       111222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+++.+.....++  .++++|.||+|+.
T Consensus        76 ~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~  118 (161)
T cd04117          76 IFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEE  118 (161)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence            999999887432233345566565543333  6899999999985

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.39  E-value=3.3e-12  Score=121.97  Aligned_cols=112  Identities=18%  Similarity=0.253  Sum_probs=79.3

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC-cHHHHHHHHHhhhcCCCcEEE
Q 025189            2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      |.+||||||++|+++|... .+++++++|.+......++++.++.+|||||..+.... .++.  ..+.++....+|+++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~--v~~~~l~~~~aDvvI   77 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEE--VARDYLLNEKPDLVV   77 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHH--HHHHHHhhcCCCEEE
Confidence            8999999999999999864 67888888887777777788899999999999875332 2211  122333346899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +|++.+  .... .......+.+.   +  .|+++|+||+|+.+
T Consensus        78 ~VvDat--~ler-~l~l~~ql~~~---~--~PiIIVlNK~Dl~~  113 (591)
T TIGR00437        78 NVVDAS--NLER-NLYLTLQLLEL---G--IPMILALNLVDEAE  113 (591)
T ss_pred             EEecCC--cchh-hHHHHHHHHhc---C--CCEEEEEehhHHHH
Confidence            995544  3332 23333333332   2  79999999999853

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.39  E-value=1.7e-12  Score=105.55  Aligned_cols=109  Identities=12%  Similarity=0.073  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|.+|+|||||+|+|++........               ..+.+...........+..+.+|||||..+..       .
T Consensus         5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-------~   77 (189)
T cd00881           5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS-------S   77 (189)
T ss_pred             EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH-------H
Confidence            5999999999999999875432110               11223333344456668889999999985321       1


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ....++  ..+|++++|++... .....+..++..+...     ..++++|+||+|+..
T Consensus        78 ~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~~i~iv~nK~D~~~  128 (189)
T cd00881          78 EVIRGL--SVSDGAILVVDANE-GVQPQTREHLRIAREG-----GLPIIVAINKIDRVG  128 (189)
T ss_pred             HHHHHH--HhcCEEEEEEECCC-CCcHHHHHHHHHHHHC-----CCCeEEEEECCCCcc
Confidence            122222  48999999977664 3445555666555541     289999999999863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04109 Rab28 Rab28 subfamily

Probab=99.39  E-value=4.1e-12  Score=106.64  Aligned_cols=112  Identities=16%  Similarity=0.180  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|||||||+|++.+...  ...+.++ +.+.......++   ...+.||||||.....       ..+..++  .++
T Consensus         6 vG~~~vGKSsLi~~l~~~~~--~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~--~~a   74 (215)
T cd04109           6 LGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG-------KMLDKYI--YGA   74 (215)
T ss_pred             ECcCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH-------HHHHHHh--hcC
Confidence            69999999999999998753  2222222 223222333343   3678999999964221       1222222  589


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|+++++....+.-..+++.+.+..+. ....++++|.||+|+.
T Consensus        75 d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~  122 (215)
T cd04109          75 HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE  122 (215)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence            9999998887633223334566777666543 1124689999999985

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.39  E-value=3.8e-12  Score=109.22  Aligned_cols=113  Identities=19%  Similarity=0.162  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  ...+.+++.........++|  ..+.||||+|..+.....     ..  ++  ...|+
T Consensus         6 lG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~-----~~--~~--~~ad~   74 (247)
T cd04143           6 LGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMR-----RL--SI--LTGDV   74 (247)
T ss_pred             ECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHH-----HH--Hh--ccCCE
Confidence            69999999999999987653  22333343333333445555  567899999975432111     10  11  47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcC-------CcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFG-------KQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g-------~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....+++.+.+...       .....|+++|+||+|+..
T Consensus        75 iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          75 FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            9999999863222333455555554311       112379999999999853

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.39  E-value=1.7e-12  Score=104.24  Aligned_cols=66  Identities=21%  Similarity=0.414  Sum_probs=43.4

Q ss_pred             EEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           45 LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        45 v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      ++|+||||+.+......++.   .+++  +..|++|||.+.+. .++..+...+........    .++++|+||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~---~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~~~~~~----~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEIT---EEYL--PKADVVIFVVDANQ-DLTESDMEFLKQMLDPDK----SRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHH---HHHH--STTEEEEEEEETTS-TGGGHHHHHHHHHHTTTC----SSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHH---HHhh--ccCCEEEEEeccCc-ccchHHHHHHHHHhcCCC----CeEEEEEcCC
Confidence            68999999987544433333   3333  68999999977764 355556666555444332    5699999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04158 ARD1 ARD1 subfamily

Probab=99.39  E-value=5.5e-12  Score=101.67  Aligned_cols=108  Identities=8%  Similarity=0.052  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++.+...  .. .. +|.........+.+..+.+|||||.......   ....+      .+.|+++
T Consensus         5 vG~~~~GKTsl~~~l~~~~~--~~-~~-~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~---~~~~~------~~ad~ii   71 (169)
T cd04158           5 LGLDGAGKTTILFKLKQDEF--MQ-PI-PTIGFNVETVEYKNLKFTIWDVGGKHKLRPL---WKHYY------LNTQAVV   71 (169)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CC-cC-CcCceeEEEEEECCEEEEEEECCCChhcchH---HHHHh------ccCCEEE
Confidence            69999999999999998742  22 22 2333333445677889999999998543211   11111      5899999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||+++++.. +++. ...+..+.+.... ...|+++|.||+|+.
T Consensus        72 ~V~D~s~~~s~~~~-~~~~~~~~~~~~~-~~~piilv~NK~Dl~  113 (169)
T cd04158          72 FVVDSSHRDRVSEA-HSELAKLLTEKEL-RDALLLIFANKQDVA  113 (169)
T ss_pred             EEEeCCcHHHHHHH-HHHHHHHhcChhh-CCCCEEEEEeCcCcc
Confidence            998877532 3222 2333333222111 126899999999984

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04154 Arl2 Arl2 subfamily

Probab=99.38  E-value=2.2e-12  Score=104.25  Aligned_cols=108  Identities=17%  Similarity=0.226  Sum_probs=66.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++++....   ...+ |.........+++..+.+|||||.....       .....++  .++|+++
T Consensus        20 vG~~~~GKTsL~~~l~~~~~~---~~~~-t~g~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~--~~~d~~i   86 (173)
T cd04154          20 LGLDNAGKTTILKKLLGEDID---TISP-TLGFQIKTLEYEGYKLNIWDVGGQKTLR-------PYWRNYF--ESTDALI   86 (173)
T ss_pred             ECCCCCCHHHHHHHHccCCCC---CcCC-ccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--CCCCEEE
Confidence            699999999999999987432   1222 2222233445678899999999975321       1122222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHh-hcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTG-TFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~-~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+.+ ....  ..|+++|+||+|+.
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~  128 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLP  128 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccc
Confidence            99887753211112223333222 1112  37999999999985

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.38  E-value=3.6e-12  Score=102.54  Aligned_cols=108  Identities=14%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEE--e--eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS--R--SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~--~--~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|||||||+|+++.....  .... .|.......  .  ......+.+|||||..........+.         ..+
T Consensus         6 vG~~~vGKTsli~~~~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~---------~~~   73 (166)
T cd00877           6 VGDGGTGKTTFVKRHLTGEFE--KKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYY---------IGG   73 (166)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--CCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHh---------cCC
Confidence            699999999999999865421  1111 122222211  1  22346789999999865433322221         589


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|+++++......-..+++.+.+..+   ..|+++|.||+|+.
T Consensus        74 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~  117 (166)
T cd00877          74 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK  117 (166)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence            999999888753221222346666666654   38999999999984

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.38  E-value=4.8e-12  Score=111.43  Aligned_cols=118  Identities=22%  Similarity=0.381  Sum_probs=79.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc---CCCC----CcceeEEEE--eeeCCe--EEEEEeCCCCCCCC---cCcHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN---SFQS----EALRPVMVS--RSKGGF--TLNIIDTPGLVEAG---YVNYQALEL   66 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~---~~~~----~t~~~~~~~--~~~~g~--~v~liDTPG~~~~~---~~~~~~~~~   66 (256)
                      +|.+|.||||++|+|++.......   ...+    .|.......  ..-+|+  +++++|||||||.-   ..-+-+...
T Consensus        29 ~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~y  108 (373)
T COG5019          29 VGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDY  108 (373)
T ss_pred             ecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHH
Confidence            699999999999999998432211   1111    122222222  233454  67899999999952   111112211


Q ss_pred             H----HHhh------------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           67 I----KGFL------------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        67 i----~~~l------------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      |    .+++            .+.++|++||.++..+..+.+.|..+++.|.+.      .++|-|+.|+|...
T Consensus       109 I~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~lT  176 (373)
T COG5019         109 IDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeeccccCC
Confidence            1    1122            245799999999988878999999999999887      69999999999863

>cd01862 Rab7 Rab7 subfamily

Probab=99.38  E-value=6.8e-12  Score=100.60  Aligned_cols=114  Identities=15%  Similarity=0.061  Sum_probs=66.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.... ....++.+.........+++.  .+.+|||||.....       .....++  .++|+
T Consensus         6 iG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~--~~~d~   75 (172)
T cd01862           6 LGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFY--RGADC   75 (172)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHh--cCCCE
Confidence            699999999999999987642 111112222222223345554  56799999964321       1112222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....+.+.+......  ....|+++|+||+|+..
T Consensus        76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          76 CVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            99998887532112222334444333321  11378999999999964

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04125 RabA_like RabA-like subfamily

Probab=99.38  E-value=3.1e-12  Score=104.84  Aligned_cols=111  Identities=15%  Similarity=0.134  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+..... ...++.+.........+++  ..+.+|||||......       ....++  .++|+
T Consensus         6 ~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~--~~~d~   75 (188)
T cd04125           6 IGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS-------LNNSYY--RGAHG   75 (188)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh-------hHHHHc--cCCCE
Confidence            6999999999999999876421 1111222222223334444  4668999999643211       112222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++......-..+++.+....+..  .++++|.||+|+.
T Consensus        76 iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~  118 (188)
T cd04125          76 YLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLV  118 (188)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCc
Confidence            999988875322222234555565554443  6899999999985

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01893 Miro1 Miro1 subfamily

Probab=99.38  E-value=3.7e-12  Score=102.27  Aligned_cols=108  Identities=16%  Similarity=0.186  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+....  ...+.+. ........+  .+..+.+|||||..+..   ...    ..++  ...|+
T Consensus         6 vG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~----~~~~--~~ad~   73 (166)
T cd01893           6 IGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDR---ANL----AAEI--RKANV   73 (166)
T ss_pred             ECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhh---HHH----hhhc--ccCCE
Confidence            699999999999999987542  2222221 111122223  45678899999976432   111    1222  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+++.+.+...   ..|+++|+||+|+.
T Consensus        74 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~  116 (166)
T cd01893          74 ICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLR  116 (166)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcc
Confidence            99998887522 22212345555655432   27999999999985

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.37  E-value=3.5e-12  Score=101.15  Aligned_cols=108  Identities=11%  Similarity=0.134  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+||||||++|++++....   ... .|.........+.+..+.+|||||......       ....++  ..+|+++
T Consensus         5 iG~~~~GKssli~~~~~~~~~---~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~--~~~~~~i   71 (158)
T cd00878           5 LGLDGAGKTTILYKLKLGEVV---TTI-PTIGFNVETVEYKNVSFTVWDVGGQDKIRP-------LWKHYY--ENTNGII   71 (158)
T ss_pred             EcCCCCCHHHHHHHHhcCCCC---CCC-CCcCcceEEEEECCEEEEEEECCCChhhHH-------HHHHHh--ccCCEEE
Confidence            699999999999999998632   111 222233344566788999999999754311       112222  4789999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++.... +... ...+..+.+... ..-.|+++|+||+|+.
T Consensus        72 ~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~  113 (158)
T cd00878          72 FVVDSSDRERIEEA-KEELHKLLNEEE-LKGVPLLIFANKQDLP  113 (158)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEeeccCCc
Confidence            997776531 2222 223333322211 1137999999999985

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04134 Rho3 Rho3 subfamily

Probab=99.37  E-value=4.5e-12  Score=104.18  Aligned_cols=109  Identities=17%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++++....  ..+.++...........++  ..+.+|||||..+.......+   +      .++|+
T Consensus         6 vG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~---~------~~a~~   74 (189)
T cd04134           6 LGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLS---Y------ADTDV   74 (189)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccccc---c------cCCCE
Confidence            699999999999999987542  2222222122222233444  578999999986543222111   1      58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +...+..++..+.+...   ..|+++|.||+|+.
T Consensus        75 ~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~  117 (189)
T cd04134          75 IMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLR  117 (189)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence            99999998743 32233346666665432   27899999999985

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.37  E-value=5.4e-12  Score=100.61  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEee---eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRS---KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~---~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|||||||++++.+........+.+++ .........   ....++.+|||||...       +......++  ..+
T Consensus         6 vG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~--~~~   76 (164)
T cd04101           6 VGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDMVSNYW--ESP   76 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHHHHHHh--CCC
Confidence            699999999999999864221223332222 122122222   2346889999999532       112223333  589


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|+++++....+....+++.+.+.. .  ..|+++|.||+|+.
T Consensus        77 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~p~ilv~nK~Dl~  120 (164)
T cd04101          77 SVFILVYDVSNKASFENCSRWVNKVRTAS-K--HMPGVLVGNKMDLA  120 (164)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccc
Confidence            99999988875321122245555555442 1  27999999999985

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04157 Arl6 Arl6 subfamily

Probab=99.37  E-value=4.1e-12  Score=100.89  Aligned_cols=112  Identities=14%  Similarity=0.132  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++.+.... ...+.++ ..........++..+.+|||||.....       .....++  .++|+++
T Consensus         5 vG~~~~GKTsl~~~l~~~~~~-~~~~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~d~ii   73 (162)
T cd04157           5 VGLDNSGKTTIINQLKPENAQ-SQIIVPT-VGFNVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYY--KNIQGII   73 (162)
T ss_pred             ECCCCCCHHHHHHHHcccCCC-cceecCc-cccceEEEEECCEEEEEEECCCCHhhH-------HHHHHHH--ccCCEEE
Confidence            699999999999999986431 2222222 112222344678899999999975322       1112222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcC-CcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g-~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++.++..-.......++.+.+... .....|+++|+||+|+.
T Consensus        74 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~  117 (162)
T cd04157          74 FVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP  117 (162)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence            99777642111112233333333211 11237999999999984

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04110 Rab35 Rab35 subfamily

Probab=99.37  E-value=8.8e-12  Score=103.33  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||++++++....  ..+.++ +...........|  ..+.+|||||.......       ...++  ..+|
T Consensus        12 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-------~~~~~--~~a~   80 (199)
T cd04110          12 IGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTI-------TSTYY--RGTH   80 (199)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHH-------HHHHh--CCCc
Confidence            699999999999999987532  111111 1112222333444  46789999996432211       11122  5789


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++++|+++.+....+.-..+++.+....+   ..++++|.||+|+.+
T Consensus        81 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~  124 (199)
T cd04110          81 GVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPE  124 (199)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence            99999888753222223345555555432   268899999999853

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04118 Rab24 Rab24 subfamily

Probab=99.37  E-value=6.1e-12  Score=103.38  Aligned_cols=110  Identities=21%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeE-EEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~-~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++... ..+.+.++..... .....++|.  .+.+|||||.........       .++  .++|
T Consensus         6 vG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~--~~~d   75 (193)
T cd04118           6 LGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSR-------IYY--RGAK   75 (193)
T ss_pred             ECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhH-------hhc--CCCC
Confidence            69999999999999998753 2333333322222 223455554  456999999754322111       111  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+....+++.+.... .+  .|+++|.||+|+.
T Consensus        76 ~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~--~piilv~nK~Dl~  118 (193)
T cd04118          76 AAIVCYDLTDSSSFERAKFWVKELQNLE-EH--CKIYLCGTKSDLI  118 (193)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhcC-CC--CCEEEEEEccccc
Confidence            9999988875321122234556555532 22  7899999999985

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04114 Rab30 Rab30 subfamily

Probab=99.37  E-value=7e-12  Score=100.43  Aligned_cols=111  Identities=14%  Similarity=0.189  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++.+.... ....++.+.........+++  ..+.+|||||.....       .....++  ...|+
T Consensus        13 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~--~~~d~   82 (169)
T cd04114          13 IGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------SITQSYY--RSANA   82 (169)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHh--cCCCE
Confidence            699999999999999976432 11112222233333445565  457889999964321       1112223  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..++..+......+  .+.++|.||+|+.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~  125 (169)
T cd04114          83 LILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLA  125 (169)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence            999988764221112234555555554433  6789999999985

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.37  E-value=3.1e-12  Score=105.50  Aligned_cols=108  Identities=16%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC---------------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~---------------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|.+|||||||+|+|++.........               .+.|..........++..+.+|||||..+..       .
T Consensus         8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~-------~   80 (194)
T cd01891           8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG-------G   80 (194)
T ss_pred             EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH-------H
Confidence            69999999999999996311111110               1223333334456678899999999986421       1


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+..++  ..+|++++|+++.+ ........++..+...   +  .|+++|+||+|+.
T Consensus        81 ~~~~~~--~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~---~--~p~iiv~NK~Dl~  130 (194)
T cd01891          81 EVERVL--SMVDGVLLLVDASE-GPMPQTRFVLKKALEL---G--LKPIVVINKIDRP  130 (194)
T ss_pred             HHHHHH--HhcCEEEEEEECCC-CccHHHHHHHHHHHHc---C--CCEEEEEECCCCC
Confidence            222222  58999999988765 2334444444443322   2  6899999999985

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.36  E-value=5.5e-12  Score=101.99  Aligned_cols=110  Identities=17%  Similarity=0.183  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++...  ...+.++. .........++|  ..+.+|||||........       ..++  .++|
T Consensus         6 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~ad   74 (170)
T cd04108           6 VGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA-------STYY--RGAQ   74 (170)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH-------HHHh--cCCC
Confidence            69999999999999998753  22232222 222222334444  568999999975322111       1111  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhh-cCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGT-FGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~-~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++.........+++.+.+. .+..  .++++|.||+|+.
T Consensus        75 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~  119 (170)
T cd04108          75 AIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLS  119 (170)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcC
Confidence            999998887532233344566655443 2222  4689999999984

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.36  E-value=7.7e-12  Score=122.38  Aligned_cols=116  Identities=15%  Similarity=0.234  Sum_probs=82.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHH-HHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALEL-IKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~-i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|+|+|... .+++.+++|.+.......+++.++.+|||||..+......  ...+. .+.++....+|
T Consensus         9 vG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD   87 (772)
T PRK09554          9 IGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD   87 (772)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC
Confidence            69999999999999999865 6788888888877777788889999999999987532110  11111 12334446899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      ++++|++.+  .... ...+..++.+. |    .|+++|+||+|..+.
T Consensus        88 ~vI~VvDat--~ler-~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~  127 (772)
T PRK09554         88 LLINVVDAS--NLER-NLYLTLQLLEL-G----IPCIVALNMLDIAEK  127 (772)
T ss_pred             EEEEEecCC--cchh-hHHHHHHHHHc-C----CCEEEEEEchhhhhc
Confidence            999995544  3322 33444555443 2    799999999998533

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.36  E-value=7.8e-12  Score=100.68  Aligned_cols=109  Identities=11%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|.+.+...   ..+.+ |..........++..+.+|||||....       ......++  ..+|+++
T Consensus         5 ~G~~~~GKTsl~~~l~~~~~---~~~~~-t~g~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~a~~ii   71 (167)
T cd04161           5 VGLDNAGKTTLVSALQGEIP---KKVAP-TVGFTPTKLRLDKYEVCIFDLGGGANF-------RGIWVNYY--AEAHGLV   71 (167)
T ss_pred             ECCCCCCHHHHHHHHhCCCC---ccccC-cccceEEEEEECCEEEEEEECCCcHHH-------HHHHHHHH--cCCCEEE
Confidence            69999999999999998621   22221 222233445667889999999996421       11222222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||++.++....+.-...+..+.+... ....|+++|.||.|+.
T Consensus        72 ~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~  113 (167)
T cd04161          72 FVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKK  113 (167)
T ss_pred             EEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence            99777653211122333444433211 1137999999999984

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04131 Rnd Rnd subfamily

Probab=99.36  E-value=6.4e-12  Score=102.50  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++.+...  ...+.++..........+++  ..+.+|||+|..........+         -+++|+
T Consensus         7 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~---------~~~a~~   75 (178)
T cd04131           7 VGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLC---------YPDSDA   75 (178)
T ss_pred             ECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhh---------cCCCCE
Confidence            69999999999999998753  22333332222222334444  467899999975432211111         168999


Q ss_pred             EEEEEeCCCCCCCHH-HHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~-~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|+++++....+. ...+++.+.+..+ +  .++++|.||+|+.
T Consensus        76 ~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~  118 (178)
T cd04131          76 VLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLR  118 (178)
T ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhh
Confidence            999999986332222 3467777776643 2  6899999999984

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.36  E-value=5.1e-12  Score=105.62  Aligned_cols=109  Identities=17%  Similarity=0.120  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|.+|+|||||+|+|++...+..+.                              ..+.|.........+++.++.+|||
T Consensus         5 iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDT   84 (208)
T cd04166           5 CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADT   84 (208)
T ss_pred             EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEEC
Confidence            6999999999999998754322210                              0234555555566778999999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+       +...+...+  ..+|++|+|++... .....+......+. ..+.   +++++|+||+|+.
T Consensus        85 pG~~~-------~~~~~~~~~--~~ad~~llVvD~~~-~~~~~~~~~~~~~~-~~~~---~~iIvviNK~D~~  143 (208)
T cd04166          85 PGHEQ-------YTRNMVTGA--STADLAILLVDARK-GVLEQTRRHSYILS-LLGI---RHVVVAVNKMDLV  143 (208)
T ss_pred             CcHHH-------HHHHHHHhh--hhCCEEEEEEECCC-CccHhHHHHHHHHH-HcCC---CcEEEEEEchhcc
Confidence            99742       222222222  58999999977764 24444444444333 2232   4678899999984

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.36  E-value=1.2e-11  Score=102.66  Aligned_cols=112  Identities=12%  Similarity=0.078  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|||||||+|++++....  ..+.++ ..........++   ...+.+|||||.......       ...++  .++
T Consensus         6 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~--~~a   74 (201)
T cd04107           6 IGDLGVGKTSIIKRYVHGIFS--QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM-------TRVYY--RGA   74 (201)
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh-------HHHHh--CCC
Confidence            699999999999999987532  112222 112222233333   456789999997432211       11222  589


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcC--CcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g--~~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|+++++....+.-..++..+.....  .....|+++|+||+|+.
T Consensus        75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~  123 (201)
T cd04107          75 VGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK  123 (201)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence            999999888753222222344555544321  12237999999999985

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.36  E-value=3.8e-12  Score=105.94  Aligned_cols=119  Identities=21%  Similarity=0.288  Sum_probs=80.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC--C--CC--ccee--EEEEeeeCCe--EEEEEeCCCCCCCCc-----------C
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF--Q--SE--ALRP--VMVSRSKGGF--TLNIIDTPGLVEAGY-----------V   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~--~--~~--t~~~--~~~~~~~~g~--~v~liDTPG~~~~~~-----------~   59 (256)
                      ||.||.||||++|.|+...+...+..  .  ..  |.+.  ..+..+-+|+  +++++|||||||.--           .
T Consensus        52 VgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyI  131 (336)
T KOG1547|consen   52 VGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYI  131 (336)
T ss_pred             EecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHH
Confidence            69999999999999998754332211  1  11  1111  1223344555  679999999998421           1


Q ss_pred             cHHHHHHHHHh--------hhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           60 NYQALELIKGF--------LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        60 ~~~~~~~i~~~--------l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      ++++-+.+++-        +.+.+.|++||.++.++..+...|.++++.|.+.      .+++-|+.|+|....
T Consensus       132 neQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  132 NEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeecccccH
Confidence            11222222221        1234689999999999888999999999999998      699999999997543

>cd04177 RSR1 RSR1 subgroup

Probab=99.35  E-value=1.5e-11  Score=98.83  Aligned_cols=112  Identities=19%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+||||||++|++.+...  ...+.+++.........+++  ..+.+|||||..+.....+.+       +  ...|+
T Consensus         7 iG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~--~~~~~   75 (168)
T cd04177           7 LGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELY-------I--KSGQG   75 (168)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHH-------H--hhCCE
Confidence            69999999999999997753  22233333322223334444  577899999976543222221       1  47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....+.+.+.+..... ..|++++.||.|+.+
T Consensus        76 ~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~-~~piiiv~nK~D~~~  120 (168)
T cd04177          76 FLLVYSVTSEASLNELGELREQVLRIKDSD-NVPMVLVGNKADLED  120 (168)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCC-CCCEEEEEEChhccc
Confidence            999988876332233345556665544321 378999999999853

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.35  E-value=2.8e-11  Score=100.20  Aligned_cols=109  Identities=11%  Similarity=0.100  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCc------cccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERV------VTVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~------~~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+++|++...      ....         ...+.|........+.++.+++++||||..+       +..
T Consensus         8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~-------~~~   80 (195)
T cd01884           8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-------YIK   80 (195)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-------HHH
Confidence            69999999999999986410      0000         0123344444445566788999999999842       333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++.+. .....+...+..+.+. |.   .++++++||+|+.
T Consensus        81 ~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~  131 (195)
T cd01884          81 NMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQV-GV---PYIVVFLNKADMV  131 (195)
T ss_pred             HHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCC
Confidence            333322  58999999977664 3666777777766554 31   3478999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.35  E-value=7.9e-12  Score=101.47  Aligned_cols=109  Identities=18%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+.++++...  ...+.++...........++  ..+.+|||||..+.......       ++  .++|+
T Consensus         7 iG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~--~~~d~   75 (174)
T cd01871           7 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL-------SY--PQTDV   75 (174)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhh-------hc--CCCCE
Confidence            69999999999999998643  22333333222222334455  56789999997543222111       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+.... .+  .|+++|.||+|+.
T Consensus        76 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~--~piilvgnK~Dl~  118 (174)
T cd01871          76 FLICFSLVSPASFENVRAKWYPEVRHHC-PN--TPIILVGTKLDLR  118 (174)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEeeChhhc
Confidence            99999998632 2222234555555543 22  7999999999984

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.35  E-value=6.1e-12  Score=101.68  Aligned_cols=109  Identities=22%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||++++.+...  ...+.+++..........++  ..+.+|||||..........       ++  .++|+
T Consensus         6 ~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~a~~   74 (173)
T cd04130           6 VGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPL-------CY--PDTDV   74 (173)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccccc-------cc--CCCcE
Confidence            69999999999999987642  33334443333333344555  46788999998543322111       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+.+.. .+  .|+++|.||+|+.
T Consensus        75 ~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~  117 (173)
T cd04130          75 FLLCFSVVNPSSFQNISEKWIPEIRKHN-PK--APIILVGTQADLR  117 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEeeChhhc
Confidence            99998887633 3333345666665532 22  7899999999985

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PLN03110 Rab GTPase; Provisional

Probab=99.35  E-value=9.9e-12  Score=104.45  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++++..... ...++...........+++  ..+.||||||...       +......++  ..+|+
T Consensus        18 vG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~--~~~~~   87 (216)
T PLN03110         18 IGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY--RGAVG   87 (216)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--CCCCE
Confidence            6999999999999999876421 1111112222223344444  4788999999642       111222222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..++..+.+..+.+  .++++|+||+|+.
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~  130 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLN  130 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcc
Confidence            999988875333333445666666665444  6899999999985

>cd04151 Arl1 Arl1 subfamily

Probab=99.35  E-value=4.3e-12  Score=100.87  Aligned_cols=108  Identities=10%  Similarity=0.129  Sum_probs=65.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++......  ...+  |.........+.+..+.+|||||..+..       .....++  .++|+++
T Consensus         5 vG~~~~GKTsl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~~~ii   71 (158)
T cd04151           5 LGLDNAGKTTILYRLQLGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYY--SNTDAII   71 (158)
T ss_pred             ECCCCCCHHHHHHHHccCCCc--CcCC--ccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--cCCCEEE
Confidence            699999999999999776532  1111  2222233455678899999999985321       1112222  5899999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++.. +......+...+....-.  ..|+++|+||+|+.
T Consensus        72 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~  113 (158)
T cd04151          72 YVVDSTDRDRLGTAKEELHAMLEEEELK--GAVLLVFANKQDMP  113 (158)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhc--CCcEEEEEeCCCCC
Confidence            998776521 111222222222221111  27999999999984

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04133 Rop_like Rop subfamily

Probab=99.35  E-value=1.2e-11  Score=100.83  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=73.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+..+.....  ...+.++...........+|  .++.+|||+|..........+.         .++|+
T Consensus         7 ~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~---------~~a~~   75 (176)
T cd04133           7 VGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSY---------RGADV   75 (176)
T ss_pred             ECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhc---------CCCcE
Confidence            69999999999999998653  22333333222233344554  4678999999865543332222         58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|+++++.. +......++..+.+..+ +  .++++|.||+|+.
T Consensus        76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~  118 (176)
T cd04133          76 FVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLR  118 (176)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhc
Confidence            99999998743 32222457777765533 3  7999999999985

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04127 Rab27A Rab27a subfamily

Probab=99.35  E-value=6.9e-12  Score=101.68  Aligned_cols=111  Identities=17%  Similarity=0.126  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeee------------CCeEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSK------------GGFTLNIIDTPGLVEAGYVNYQALELI   67 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~------------~g~~v~liDTPG~~~~~~~~~~~~~~i   67 (256)
                      +|.+|||||||+|++.+...  ...+.++ +.........+            ....+.+|||||...       +....
T Consensus        10 vG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~   80 (180)
T cd04127          10 LGDSGVGKTSFLYQYTDNKF--NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------FRSLT   80 (180)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------HHHHH
Confidence            69999999999999998653  1222111 11111111222            236788999999532       22122


Q ss_pred             HHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhc-CCcccccEEEEEecccCCC
Q 025189           68 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTF-GKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        68 ~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~-g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ..++  .++|++++|+++++..-...-..++..+.... ..+  .|+++|.||+|+.+
T Consensus        81 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piiiv~nK~Dl~~  134 (180)
T cd04127          81 TAFF--RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCEN--PDIVLCGNKADLED  134 (180)
T ss_pred             HHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEeCccchh
Confidence            2222  58999999988875322122234555554432 122  68999999999853

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01863 Rab18 Rab18 subfamily

Probab=99.35  E-value=8.1e-12  Score=99.27  Aligned_cols=112  Identities=13%  Similarity=0.054  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+||||||++|++++....... .+..+.........+++  ..+.+|||||.......       ...++  ..+|+
T Consensus         6 ~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~--~~~d~   75 (161)
T cd01863           6 IGDSGVGKSSLLLRFTDDTFDPDL-AATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL-------TSSYY--RGAQG   75 (161)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCccc-CCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh-------hHHHh--CCCCE
Confidence            699999999999999987542211 11111111112223333  57899999996432211       12222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++..-.+....++..+.+.... .-.++++|.||+|+.
T Consensus        76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~iv~nK~D~~  119 (161)
T cd01863          76 VILVYDVTRRDTFTNLETWLNELETYSTN-NDIVKMLVGNKIDKE  119 (161)
T ss_pred             EEEEEECCCHHHHHhHHHHHHHHHHhCCC-CCCcEEEEEECCccc
Confidence            99998887532112223345555554322 237899999999985

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.35  E-value=7.3e-12  Score=96.54  Aligned_cols=111  Identities=16%  Similarity=0.172  Sum_probs=65.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||+|++++.... ......+...........  .+..+++|||||..+.....       ..++  ...|+
T Consensus         2 iG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~--~~~~~   71 (157)
T cd00882           2 VGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RLYY--RGADG   71 (157)
T ss_pred             CCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HHHh--cCCCE
Confidence            699999999999999997652 111112212222222222  26788999999986543211       1111  68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHH--HHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQII--KAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~--~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|++++... ...+....  ..+...  .....++++|+||+|+..
T Consensus        72 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~  116 (157)
T cd00882          72 IILVYDVTDRE-SFENVKEWLLLILINK--EGENIPIILVGNKIDLPE  116 (157)
T ss_pred             EEEEEECcCHH-HHHHHHHHHHHHHHhh--ccCCCcEEEEEecccccc
Confidence            99997777421 11111111  111222  223489999999999853

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.35  E-value=1.4e-11  Score=96.17  Aligned_cols=111  Identities=17%  Similarity=0.225  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||+|+|++.. +..+..++.+..........++  ..+.+|||||..+........   .      ...+.
T Consensus         7 ~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~---~------~~~~~   76 (161)
T TIGR00231         7 VGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLY---Y------RAVES   76 (161)
T ss_pred             ECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHH---H------hhhhE
Confidence            6999999999999999987 4555555555555555566777  778999999964432211111   1      24455


Q ss_pred             EEEEEeCCCC--CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAY--RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~--r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++++++...  .+..........+......  -.|+++|+||+|+.
T Consensus        77 ~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~  121 (161)
T TIGR00231        77 SLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLR  121 (161)
T ss_pred             EEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCC
Confidence            5555443321  1122222344444444322  27899999999985

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.35  E-value=4.2e-12  Score=109.59  Aligned_cols=116  Identities=22%  Similarity=0.273  Sum_probs=88.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeE-EEEEeCCCCCCCCcCcH----HHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT-LNIIDTPGLVEAGYVNY----QALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~-v~liDTPG~~~~~~~~~----~~~~~i~~~l~~~~   75 (256)
                      ||-+++|||||+|+|...+. .++.++.||..+......+++.. ++|.|.||+.+..+.++    ++++.|.      +
T Consensus       202 VG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE------R  274 (366)
T KOG1489|consen  202 VGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE------R  274 (366)
T ss_pred             ecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH------h
Confidence            68999999999999999876 78889999999988877777664 99999999999876654    6777775      7


Q ss_pred             CcEEEEEEeCCCC---CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAY---RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~---r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++.++||++++..   ...+.-..+..++...-..-..++.++|.||+|..
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence            8999999888865   22233333344443332222347899999999983

>PTZ00369 Ras-like protein; Provisional

Probab=99.35  E-value=1e-11  Score=102.08  Aligned_cols=111  Identities=19%  Similarity=0.173  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++.+....  ..+.++..........+++  ..+.+|||||..+.......+       +  .+.|+
T Consensus        11 iG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~-------~--~~~d~   79 (189)
T PTZ00369         11 VGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQY-------M--RTGQG   79 (189)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHH-------h--hcCCE
Confidence            699999999999999987532  2222332222222333444  457789999986543222111       1  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+.+.+.+..... ..|+++|.||+|+.
T Consensus        80 iilv~D~s~~~s~~~~~~~~~~i~~~~~~~-~~piiiv~nK~Dl~  123 (189)
T PTZ00369         80 FLCVYSITSRSSFEEIASFREQILRVKDKD-RVPMILVGNKCDLD  123 (189)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccc
Confidence            999988876332233445556665543321 26899999999974

>cd04135 Tc10 TC10 subfamily

Probab=99.35  E-value=8.5e-12  Score=100.52  Aligned_cols=109  Identities=20%  Similarity=0.238  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||+|++.+....  ..+.++...........++.  .+.+|||||..+.......+         -.+.|+
T Consensus         6 ~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---------~~~~~~   74 (174)
T cd04135           6 VGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLS---------YPMTDV   74 (174)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccccccc---------CCCCCE
Confidence            699999999999999987632  22222222222223344554  46799999986543222111         157899


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.+ +......+++.+.+. ..+  .|+++|.||+|+.
T Consensus        75 ~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~  117 (174)
T cd04135          75 FLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLR  117 (174)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhh
Confidence            99998887633 322333455556544 333  7999999999984

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04126 Rab20 Rab20 subfamily

Probab=99.34  E-value=1.5e-11  Score=103.78  Aligned_cols=109  Identities=14%  Similarity=0.123  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++++++....  . .. .|.....+...+....+.+|||||..........+       +  .++|+++
T Consensus         6 vG~~~vGKTSLi~r~~~~~f~--~-~~-~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~-------~--~~ad~~I   72 (220)
T cd04126           6 LGDMNVGKTSLLHRYMERRFK--D-TV-STVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMY-------C--RGAAAVI   72 (220)
T ss_pred             ECCCCCcHHHHHHHHhcCCCC--C-CC-CccceEEEEEEeeEEEEEEEeCCCcccchhhHHHH-------h--ccCCEEE
Confidence            699999999999999987642  1 11 22222223334556788999999975432221111       1  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +|+++++....+.-...+..+.+....+  .++++|.||+|+.+
T Consensus        73 lV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~  114 (220)
T cd04126          73 LTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE  114 (220)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence            9999886322222223444444443333  68999999999853

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.34  E-value=1.1e-11  Score=99.89  Aligned_cols=113  Identities=12%  Similarity=0.103  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++++... .....++.+.........+++  ..+.+|||||..+..   ..   ....++  ..+|+
T Consensus         8 vG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~---~~~~~~--~~~d~   78 (170)
T cd04115           8 IGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---KS---MVQHYY--RNVHA   78 (170)
T ss_pred             ECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---Hh---hHHHhh--cCCCE
Confidence            69999999999999998653 111111111112222334444  578999999964321   01   112222  58899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........+++.+...... .-.|+++|.||+|+.
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~  122 (170)
T cd04115          79 VVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLR  122 (170)
T ss_pred             EEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccch
Confidence            99998887633223334455555544321 237999999999985

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.34  E-value=7.9e-12  Score=103.47  Aligned_cols=111  Identities=17%  Similarity=0.200  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++....  ..+..++.........+++  ..+.+|||||.........    .   ++  ..+|+
T Consensus         5 vG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~----~---~~--~~ad~   73 (198)
T cd04147           5 MGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRK----L---SI--QNSDA   73 (198)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHH----H---Hh--hcCCE
Confidence            699999999999999987632  2233333333333445566  5788999999754321111    1   11  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++..-.+....++..+.+.... ...|+++|+||+|+.
T Consensus        74 vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~  117 (198)
T cd04147          74 FALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSL  117 (198)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEccccc
Confidence            99998877522122233444555554332 237999999999985

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=99.34  E-value=1.3e-11  Score=101.74  Aligned_cols=109  Identities=15%  Similarity=0.146  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-CcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|..|||||||++++.+...  ...+.+ .+.........+++  ..+.+|||||......       ....+.  .++|
T Consensus        12 iG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-------l~~~~~--~~ad   80 (189)
T cd04121          12 VGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT-------IFRSYS--RGAQ   80 (189)
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHh--cCCC
Confidence            69999999999999997642  122221 12222223345565  5678999999854321       111222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|+|+++++..-.+.-..+++.+.+... +  .|++||.||+|+.
T Consensus        81 ~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~--~piilVGNK~DL~  123 (189)
T cd04121          81 GIILVYDITNRWSFDGIDRWIKEIDEHAP-G--VPKILVGNRLHLA  123 (189)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccch
Confidence            99999999864423333567777766543 3  7999999999984

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.34  E-value=6.4e-12  Score=102.67  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=65.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++....  ..+.++............   ...+.+|||||..+...       ....++  .++|
T Consensus         6 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~~ad   74 (187)
T cd04132           6 VGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR-------LRPLSY--PDVD   74 (187)
T ss_pred             ECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH-------HHHHhC--CCCC
Confidence            699999999999999987632  222222221112222232   34678999999643211       111111  5899


Q ss_pred             EEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++.. +......++..+... ..+  .|+++|.||+|+.
T Consensus        75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~  118 (187)
T cd04132          75 VLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLR  118 (187)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhh
Confidence            999998887632 222222344444433 222  7999999999984

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.33  E-value=1.7e-12  Score=98.32  Aligned_cols=112  Identities=16%  Similarity=0.130  Sum_probs=64.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc---ccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT---VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~---~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+++|++.....   .......+..........+...+.+||++|...........   +      ..+|
T Consensus         5 ~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---~------~~~d   75 (119)
T PF08477_consen    5 LGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFF---L------KKAD   75 (119)
T ss_dssp             ECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHH---H------HHSC
T ss_pred             ECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccch---h------hcCc
Confidence            5999999999999999886531   11122222222222233344458899999985433222222   2      3799


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      ++++|+++++...-+.-.++++.+...-+.....|+++|.||.|
T Consensus        76 ~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   76 AVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999888753211121234444544433222379999999987

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04149 Arf6 Arf6 subfamily

Probab=99.33  E-value=6.4e-12  Score=101.41  Aligned_cols=108  Identities=11%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++++......  . ..++ ...........+..+.+|||||.....       .....++  .++|+++
T Consensus        15 ~G~~~~GKTsli~~l~~~~~~--~-~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~a~~ii   81 (168)
T cd04149          15 LGLDAAGKTTILYKLKLGQSV--T-TIPT-VGFNVETVTYKNVKFNVWDVGGQDKIR-------PLWRHYY--TGTQGLI   81 (168)
T ss_pred             ECcCCCCHHHHHHHHccCCCc--c-ccCC-cccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--ccCCEEE
Confidence            699999999999999875431  2 1112 112222344577899999999984321       1111222  5899999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||+++++.. +.+....+.+.+.+....+  .|+++|+||+|+.
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~  123 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRD--ALLLVFANKQDLP  123 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcC--CcEEEEEECcCCc
Confidence            998877532 3222222222222211122  6899999999984

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.33  E-value=1.3e-11  Score=99.98  Aligned_cols=109  Identities=11%  Similarity=0.065  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|+|||||+|++.+......    ..|.........+++..+.+|||||.....       .....++  .++|+++
T Consensus        21 ~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~--~~~d~vi   87 (174)
T cd04153          21 VGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYKNIRFLMWDIGGQESLR-------SSWNTYY--TNTDAVI   87 (174)
T ss_pred             ECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEECCeEEEEEECCCCHHHH-------HHHHHHh--hcCCEEE
Confidence            69999999999999987654221    122223334556678899999999975321       1111222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++.++..-.......+..+.+.-+ ....|+++++||+|+.
T Consensus        88 ~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~  129 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLK  129 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence            99777642111111222222221111 0127999999999984

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.33  E-value=8.5e-12  Score=97.97  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|.+.... ....+  |..........++..+.+|||||....       ......++  ..+|+++
T Consensus         5 ~G~~~~GKssl~~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~--~~~d~ii   72 (159)
T cd04159           5 VGLQNSGKTTLVNVIAGGQFS-EDTIP--TVGFNMRKVTKGNVTLKVWDLGGQPRF-------RSMWERYC--RGVNAIV   72 (159)
T ss_pred             EcCCCCCHHHHHHHHccCCCC-cCccC--CCCcceEEEEECCEEEEEEECCCCHhH-------HHHHHHHH--hcCCEEE
Confidence            699999999999999997542 11112  222222334566788999999997421       12222233  5789999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+..... ....|+++|+||+|+.
T Consensus        73 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~  114 (159)
T cd04159          73 YVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLP  114 (159)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence            99776642111111122222222111 0126899999999974

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.32  E-value=8.4e-12  Score=99.07  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|++.+......  . + |.......... .+..+.+|||||.....       .....++  .++|++
T Consensus         5 ~G~~~~GKTsl~~~~~~~~~~~~--~-~-t~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~--~~~~~i   71 (160)
T cd04156           5 LGLDSAGKSTLLYKLKHAELVTT--I-P-TVGFNVEMLQLEKHLSLTVWDVGGQEKMR-------TVWKCYL--ENTDGL   71 (160)
T ss_pred             EcCCCCCHHHHHHHHhcCCcccc--c-C-ccCcceEEEEeCCceEEEEEECCCCHhHH-------HHHHHHh--ccCCEE
Confidence            69999999999999999865322  1 1 11111222223 34689999999974321       1111222  578999


Q ss_pred             EEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++.++.. +......+.+.+......  ..|+++|+||+|+.
T Consensus        72 v~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~  114 (160)
T cd04156          72 VYVVDSSDEARLDESQKELKHILKNEHIK--GVPVVLLANKQDLP  114 (160)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECcccc
Confidence            9997776421 222222222222221111  27999999999984

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.32  E-value=1e-11  Score=99.27  Aligned_cols=108  Identities=9%  Similarity=0.112  Sum_probs=64.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++++......  + +.++. ........++...+.+|||||....       ......++  .++|+++
T Consensus         6 ~G~~~~GKTsli~~l~~~~~~--~-~~pt~-g~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~ad~~i   72 (159)
T cd04150           6 VGLDAAGKTTILYKLKLGEIV--T-TIPTI-GFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QNTQGLI   72 (159)
T ss_pred             ECCCCCCHHHHHHHHhcCCCc--c-cCCCC-CcceEEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cCCCEEE
Confidence            699999999999999655431  2 22221 1222234567788999999998432       11112222  5899999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||+++++.. +......+.+.+......  -.|++++.||.|+.
T Consensus        73 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~  114 (159)
T cd04150          73 FVVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLP  114 (159)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCC
Confidence            998876522 322222222222221111  26899999999984

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.32  E-value=1.4e-11  Score=99.00  Aligned_cols=108  Identities=15%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++++.+...  ...+.++. ..........+..+.+|||||.......   ....+      .++|+++
T Consensus         5 vG~~~vGKTsli~~~~~~~~--~~~~~pt~-g~~~~~i~~~~~~l~i~Dt~G~~~~~~~---~~~~~------~~ad~ii   72 (164)
T cd04162           5 LGLDGAGKTSLLHSLSSERS--LESVVPTT-GFNSVAIPTQDAIMELLEIGGSQNLRKY---WKRYL------SGSQGLI   72 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--cccccccC-CcceEEEeeCCeEEEEEECCCCcchhHH---HHHHH------hhCCEEE
Confidence            69999999999999998753  12222221 1122334566789999999997643211   11122      5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||++.++..-....+..+..+....   ...|+++|.||.|+.
T Consensus        73 ~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~  112 (164)
T cd04162          73 FVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLP  112 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCc
Confidence            9987765221112223333332221   237999999999984

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.32  E-value=1.7e-11  Score=99.56  Aligned_cols=107  Identities=11%  Similarity=0.129  Sum_probs=64.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++.+.....  .. ..+ |.........+.+..+.+|||||.....       .....++  .++|+++
T Consensus        19 ~G~~~~GKTsL~~~~~~~~~--~~-~~~-t~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~--~~ad~ii   85 (175)
T smart00177       19 VGLDAAGKTTILYKLKLGES--VT-TIP-TIGFNVETVTYKNISFTVWDVGGQDKIR-------PLWRHYY--TNTQGLI   85 (175)
T ss_pred             EcCCCCCHHHHHHHHhcCCC--CC-cCC-ccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHh--CCCCEEE
Confidence            69999999999999965432  11 222 2222223445678899999999974321       1122222  5899999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHH-HhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAV-TGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l-~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++.. +.+. ...+..+ .+....  ..|++||+||+|+.
T Consensus        86 ~v~D~t~~~s~~~~-~~~l~~~~~~~~~~--~~piilv~NK~Dl~  127 (175)
T smart00177       86 FVVDSNDRDRIDEA-REELHRMLNEDELR--DAVILVFANKQDLP  127 (175)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHhhCHhhc--CCcEEEEEeCcCcc
Confidence            998877522 2222 2222222 221112  26899999999984

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.32  E-value=2.6e-11  Score=96.29  Aligned_cols=111  Identities=18%  Similarity=0.199  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++..........++  ..+.+|||||..+...       ....++  ...|+
T Consensus         6 ~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~--~~~~~   74 (164)
T cd04139           6 VGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA-------IRDNYH--RSGEG   74 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH-------HHHHHh--hcCCE
Confidence            69999999999999998653  22333333332222333443  5688999999754321       111222  47799


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++......-..++..+..... ....|+++|+||+|+.
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~  118 (164)
T cd04139          75 FLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLE  118 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccc
Confidence            9999877653211222344444444422 1238999999999985

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.32  E-value=1.5e-11  Score=100.71  Aligned_cols=109  Identities=16%  Similarity=0.132  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++.+...  ...+.++..........+++  ..+.+|||+|.........       .++  .++|+
T Consensus        11 vGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~-------~~~--~~ad~   79 (182)
T cd04172          11 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LSY--PDSDA   79 (182)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhh-------hhc--CCCCE
Confidence            69999999999999998653  22333332222222334444  4678999999743321111       111  68999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+++.+.+..+ +  .++++|.||+|+.
T Consensus        80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~  122 (182)
T cd04172          80 VLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR  122 (182)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhh
Confidence            99999998633 22222467777776543 2  7899999999984

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=1.1e-11  Score=109.90  Aligned_cols=118  Identities=21%  Similarity=0.295  Sum_probs=78.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC------CCCcceeEE--EEeeeCCe--EEEEEeCCCCCCCC----cCc--HH-H
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF------QSEALRPVM--VSRSKGGF--TLNIIDTPGLVEAG----YVN--YQ-A   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~------~~~t~~~~~--~~~~~~g~--~v~liDTPG~~~~~----~~~--~~-~   63 (256)
                      +|.+|.||||+||+||+........+      ...|.....  ...+-+|+  +++|+||||+||.-    ...  .. +
T Consensus        27 vG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi  106 (366)
T KOG2655|consen   27 VGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYI  106 (366)
T ss_pred             ecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHH
Confidence            69999999999999999854221111      111222222  22233455  56899999999941    010  11 1


Q ss_pred             HHHHHHhh-----------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           64 LELIKGFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        64 ~~~i~~~l-----------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      -+...+++           .+.++|++||.++..+..+...|..+++.+.+.      .++|-|+.|+|...
T Consensus       107 ~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen  107 DSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT  172 (366)
T ss_pred             HHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence            12233333           234799999998888866999999999988877      69999999999853

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.31  E-value=1.6e-11  Score=98.93  Aligned_cols=109  Identities=16%  Similarity=0.191  Sum_probs=67.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++.+....  ..+.++..........+++.  .+.+|||||..+.......       .  ..+.|+
T Consensus         7 iG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~--~~~~d~   75 (175)
T cd01870           7 VGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL-------S--YPDTDV   75 (175)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhcccc-------c--cCCCCE
Confidence            699999999999999986531  22222222222223344443  6789999997543221111       1  158899


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+.+..+ +  .|+++|.||+|+.
T Consensus        76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~  118 (175)
T cd01870          76 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLR  118 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcc
Confidence            99998888632 22222335555554432 2  7999999999985

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01889 SelB_euk SelB subfamily

Probab=99.31  E-value=3.3e-11  Score=99.23  Aligned_cols=108  Identities=17%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC------cccccCCCCCcceeEEEEeeeC--------------CeEEEEEeCCCCCCCCcCc
Q 025189            1 MGKGGVGKSSTVNSVIGER------VVTVNSFQSEALRPVMVSRSKG--------------GFTLNIIDTPGLVEAGYVN   60 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~--------------g~~v~liDTPG~~~~~~~~   60 (256)
                      +|.+|+|||||+|+|++..      ....+...++|.........+.              +..+++|||||..+     
T Consensus         6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-----   80 (192)
T cd01889           6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS-----   80 (192)
T ss_pred             EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-----
Confidence            5999999999999999731      1111111233433333333332              67899999999731     


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        61 ~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                        +...+...  ...+|++++|++... ..+..+...+... +..+    .++++|+||+|+.
T Consensus        81 --~~~~~~~~--~~~~d~vi~VvD~~~-~~~~~~~~~~~~~-~~~~----~~~iiv~NK~Dl~  133 (192)
T cd01889          81 --LIRTIIGG--AQIIDLMLLVVDATK-GIQTQTAECLVIG-EILC----KKLIVVLNKIDLI  133 (192)
T ss_pred             --HHHHHHHH--HhhCCEEEEEEECCC-CccHHHHHHHHHH-HHcC----CCEEEEEECcccC
Confidence              22222111  147899999977664 2334443333322 2222    6899999999985

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.31  E-value=2e-11  Score=99.02  Aligned_cols=111  Identities=20%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++..........++  ..+.+|||||..+......       .++  ...|+
T Consensus         7 ~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~~--~~~~~   75 (180)
T cd04137           7 LGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQ-------KYS--IGIHG   75 (180)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHH-------HHH--hhCCE
Confidence            69999999999999998753  22223333222233334444  4578999999764321111       111  47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+.+..+. ...|+++|.||+|+.
T Consensus        76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~  119 (180)
T cd04137          76 YILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLH  119 (180)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhh
Confidence            99998887632222334444555554332 236899999999985

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.31  E-value=1.5e-11  Score=100.61  Aligned_cols=111  Identities=14%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee---eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+||||||++|++.+....  ...++.+.........   ..+..+.+|||||.....       .....++  ..+|
T Consensus         9 vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~--~~~d   77 (183)
T cd04152           9 LGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------PLWKSYT--RCTD   77 (183)
T ss_pred             ECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH-------HHHHHHh--ccCC
Confidence            699999999999999886532  2222222122222222   246789999999974221       1112222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+.-...+..+.+.... ...|+++|+||+|+.
T Consensus        78 ~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~  122 (183)
T cd04152          78 GIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLP  122 (183)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCcc
Confidence            999998776421111112233333333221 137999999999984

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04116 Rab9 Rab9 subfamily

Probab=99.31  E-value=1.8e-11  Score=98.29  Aligned_cols=113  Identities=20%  Similarity=0.157  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.... ....+..+.........+++  ..+.+|||||.....       .....++  ..+|+
T Consensus        11 vG~~~~GKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~--~~~d~   80 (170)
T cd04116          11 LGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR-------SLRTPFY--RGSDC   80 (170)
T ss_pred             ECCCCCCHHHHHHHHHcCCCC-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH-------HhHHHHh--cCCCE
Confidence            699999999999999986532 11112222222222334444  466889999964221       1112222  58899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+...+.+....  ....|+++|+||+|+.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          81 CLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             EEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence            99999888633122233455555444321  1136899999999984

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.30  E-value=1.9e-11  Score=100.00  Aligned_cols=106  Identities=11%  Similarity=0.140  Sum_probs=65.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++.+......  . ..+ |..........++..+.+|||||.....       .....++  .++|+++
T Consensus        23 vG~~~vGKTsli~~~~~~~~~--~-~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~--~~ad~iI   89 (182)
T PTZ00133         23 VGLDAAGKTTILYKLKLGEVV--T-TIP-TIGFNVETVEYKNLKFTMWDVGGQDKLR-------PLWRHYY--QNTNGLI   89 (182)
T ss_pred             EcCCCCCHHHHHHHHhcCCcc--c-cCC-ccccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHh--cCCCEEE
Confidence            699999999999999754331  2 222 2222233455678899999999974321       1112222  5899999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++.. +....    +.+.+.....  ...|+++|+||.|+.
T Consensus        90 ~v~D~t~~~s~~~~~----~~l~~~~~~~~~~~~piilv~NK~Dl~  131 (182)
T PTZ00133         90 FVVDSNDRERIGDAR----EELERMLSEDELRDAVLLVFANKQDLP  131 (182)
T ss_pred             EEEeCCCHHHHHHHH----HHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence            998876522 22222    2333332211  126899999999984

>cd01890 LepA LepA subfamily

Probab=99.30  E-value=1.4e-11  Score=99.74  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc-----cCC---------CCCcceeEEEEe-----eeCCeEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV-----NSF---------QSEALRPVMVSR-----SKGGFTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~-----~~~---------~~~t~~~~~~~~-----~~~g~~v~liDTPG~~~~~~~~~   61 (256)
                      +|.+|||||||+|+|++...+..     ..+         .+.+........     ...+..+.+|||||..+..    
T Consensus         6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----   81 (179)
T cd01890           6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS----   81 (179)
T ss_pred             EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH----
Confidence            69999999999999997532110     000         012222222222     2245678899999986532    


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                         ..+..++  .++|++++|++... ..+..+...+..+..   .+  .++++|+||+|+.
T Consensus        82 ---~~~~~~~--~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~  132 (179)
T cd01890          82 ---YEVSRSL--AACEGALLLVDATQ-GVEAQTLANFYLALE---NN--LEIIPVINKIDLP  132 (179)
T ss_pred             ---HHHHHHH--HhcCeEEEEEECCC-CccHhhHHHHHHHHH---cC--CCEEEEEECCCCC
Confidence               1222222  47999999987764 233334333333322   22  6899999999984

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04148 RGK RGK subfamily

Probab=99.30  E-value=2e-11  Score=103.05  Aligned_cols=111  Identities=16%  Similarity=0.059  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcC-CC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK-TI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~-~~   76 (256)
                      +|.+|||||||++++++.... ...+.++.. ........+  ....+.+|||||..  .     ....  .++  . ++
T Consensus         6 vG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~-----~~~~--~~~--~~~a   73 (221)
T cd04148           6 LGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--M-----WTED--SCM--QYQG   73 (221)
T ss_pred             ECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--h-----HHHh--HHh--hcCC
Confidence            699999999999999866432 122222211 222223334  34678999999986  1     1111  111  4 79


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      |++++|+++++....+...+++..+.+... ....|+++|.||+|+.+
T Consensus        74 d~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~  120 (221)
T cd04148          74 DAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLAR  120 (221)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccc
Confidence            999999988863322223455565655421 12379999999999853

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01892 Miro2 Miro2 subfamily

Probab=99.30  E-value=7.3e-11  Score=95.24  Aligned_cols=109  Identities=17%  Similarity=0.061  Sum_probs=67.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||++++++.... +..+.+++. ........++|  ..+.+|||+|..........+.         .++|
T Consensus        10 vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~---------~~~d   79 (169)
T cd01892          10 LGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAEL---------AACD   79 (169)
T ss_pred             ECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhh---------hcCC
Confidence            699999999999999997642 133333322 22223344555  5678999999865533332222         5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|+|+++++.   .....+.+.+... ......|+++|+||+|+.
T Consensus        80 ~~llv~d~~~~---~s~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~  121 (169)
T cd01892          80 VACLVYDSSDP---KSFSYCAEVYKKY-FMLGEIPCLFVAAKADLD  121 (169)
T ss_pred             EEEEEEeCCCH---HHHHHHHHHHHHh-ccCCCCeEEEEEEccccc
Confidence            99999877642   1112222222222 111137999999999984

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.30  E-value=1.4e-11  Score=105.97  Aligned_cols=116  Identities=22%  Similarity=0.289  Sum_probs=85.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH-----HHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL-----ELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~-----~~i~~~l~~~~   75 (256)
                      ||.++||||||.|.++|..++.++....||+........-+..++.++||||+-.........+     +....  ....
T Consensus        78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~--a~q~  155 (379)
T KOG1423|consen   78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRD--AAQN  155 (379)
T ss_pred             EcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHH--HHhh
Confidence            6999999999999999999999998877887777777777888999999999987653322111     11111  2257


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++++++++.+.| .....+.+..+.+...    .|.++|.||.|..
T Consensus       156 AD~vvVv~Das~tr-~~l~p~vl~~l~~ys~----ips~lvmnkid~~  198 (379)
T KOG1423|consen  156 ADCVVVVVDASATR-TPLHPRVLHMLEEYSK----IPSILVMNKIDKL  198 (379)
T ss_pred             CCEEEEEEeccCCc-CccChHHHHHHHHHhc----CCceeeccchhcc
Confidence            99999998887645 2333455555555432    5889999999875

>cd01875 RhoG RhoG subfamily

Probab=99.29  E-value=2.2e-11  Score=100.28  Aligned_cols=109  Identities=17%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++.+.....  ...+.++..........+++  ..+.+|||||..........       +.  .++|+
T Consensus         9 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~-------~~--~~a~~   77 (191)
T cd01875           9 VGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTL-------SY--PQTNV   77 (191)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhh-------hc--cCCCE
Confidence            69999999999999997643  12222222222222233444  46789999998543221111       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+.+.+.+.. .+  .|+++|.||.|+.
T Consensus        78 ~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~  120 (191)
T cd01875          78 FIICFSIASPSSYENVRHKWHPEVCHHC-PN--VPILLVGTKKDLR  120 (191)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEeChhhh
Confidence            99999998633 3222223555555443 23  7999999999984

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.29  E-value=2.5e-11  Score=103.06  Aligned_cols=109  Identities=13%  Similarity=0.115  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      ||.+|||||||++.+.+...  ...+.++..........+++  ..+.||||+|..........       ++  .++|+
T Consensus        19 vGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~-------~~--~~ad~   87 (232)
T cd04174          19 VGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPL-------CY--SDSDA   87 (232)
T ss_pred             ECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHH-------Hc--CCCcE
Confidence            69999999999999998753  22233332222222234444  56789999997432211111       11  68999


Q ss_pred             EEEEEeCCCCCCCH-HHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~-~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+ ....+++.+.+..+ +  .++++|.||+|+.
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~  130 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLR  130 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccc
Confidence            99999998633222 23456677776543 2  6899999999984

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.29  E-value=2.3e-11  Score=99.40  Aligned_cols=107  Identities=9%  Similarity=0.089  Sum_probs=65.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++.+......  . ..+ |.........+++..+.+|||||...       +......++  .++|+++
T Consensus        23 vG~~~~GKTsl~~~l~~~~~~--~-~~p-t~g~~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~--~~a~~iI   89 (181)
T PLN00223         23 VGLDAAGKTTILYKLKLGEIV--T-TIP-TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF--QNTQGLI   89 (181)
T ss_pred             ECCCCCCHHHHHHHHccCCCc--c-ccC-CcceeEEEEEECCEEEEEEECCCCHH-------HHHHHHHHh--ccCCEEE
Confidence            699999999999999865432  2 112 22222334566788999999999632       111222222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..   .-....+.+.+.+...  -..|++||+||.|+.
T Consensus        90 ~V~D~s~~~---s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~  131 (181)
T PLN00223         90 FVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
T ss_pred             EEEeCCcHH---HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence            998876521   1112223333332211  127899999999984

>cd00879 Sar1 Sar1 subfamily

Probab=99.29  E-value=1.3e-11  Score=101.19  Aligned_cols=108  Identities=14%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++.+.....   + ..|..+......+++..+.+|||||....       ......++  .++|+++
T Consensus        25 lG~~~~GKStLi~~l~~~~~~~---~-~~T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~ad~ii   91 (190)
T cd00879          25 LGLDNAGKTTLLHMLKDDRLAQ---H-VPTLHPTSEELTIGNIKFKTFDLGGHEQA-------RRLWKDYF--PEVDGIV   91 (190)
T ss_pred             ECCCCCCHHHHHHHHhcCCCcc---c-CCccCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--ccCCEEE
Confidence            6999999999999999876421   1 12333344556678899999999996421       11122222  5789999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++.+.. +. .....+..+.+.. .....|+++|+||+|+.
T Consensus        92 lV~D~~~~~s~~-~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~  133 (190)
T cd00879          92 FLVDAADPERFQ-ESKEELDSLLSDE-ELANVPFLILGNKIDLP  133 (190)
T ss_pred             EEEECCcHHHHH-HHHHHHHHHHcCc-cccCCCEEEEEeCCCCC
Confidence            997776421 21 1222333322211 11237999999999984

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.29  E-value=2.2e-11  Score=102.75  Aligned_cols=109  Identities=16%  Similarity=0.128  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      ||.+|||||||++++.+...  ...+.++..........+++  ..+.+|||+|..........       +  -+++|+
T Consensus         7 vGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~-------~--~~~~d~   75 (222)
T cd04173           7 VGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPL-------A--YPDSDA   75 (222)
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHH-------h--ccCCCE
Confidence            69999999999999998653  22333332222222334544  46788999997533211111       1  169999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|+++++.. +......+...+.+.. .+  .|+++|.||+|+.
T Consensus        76 illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~  118 (222)
T cd04173          76 VLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMR  118 (222)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccc
Confidence            99999988632 2222233444444332 33  6999999999984

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.29  E-value=2.1e-11  Score=102.79  Aligned_cols=109  Identities=12%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+++++....  ...+.++. ..........  ....+.+|||||..........+       .  .+.|
T Consensus        19 vG~~gvGKTsli~~~~~~~f--~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~~~   87 (219)
T PLN03071         19 VGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-------Y--IHGQ   87 (219)
T ss_pred             ECcCCCCHHHHHHHHhhCCC--CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHH-------c--cccc
Confidence            69999999999999876543  11122221 1111122222  34688999999986543221111       1  5889


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|+|+++++.........+++.+.+.. .+  .++++|.||+|+.
T Consensus        88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~--~piilvgNK~Dl~  130 (219)
T PLN03071         88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-EN--IPIVLCGNKVDVK  130 (219)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CC--CcEEEEEEchhhh
Confidence            9999988886332233345666666553 23  7999999999984

>CHL00071 tufA elongation factor Tu

Probab=99.29  E-value=8.9e-11  Score=107.81  Aligned_cols=109  Identities=10%  Similarity=0.072  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc---------------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN---------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+|+|++......+               ...+.|........+.++.+++++||||..       ++..
T Consensus        18 ~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~-------~~~~   90 (409)
T CHL00071         18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-------DYVK   90 (409)
T ss_pred             ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH-------HHHH
Confidence            599999999999999975221100               012333333333445677889999999963       3333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++.+. .....+...+..+... |.   +++++++||+|+.
T Consensus        91 ~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~-g~---~~iIvvvNK~D~~  141 (409)
T CHL00071         91 NMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQV-GV---PNIVVFLNKEDQV  141 (409)
T ss_pred             HHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEccCCC
Confidence            333333  47999999977664 3666777777666544 31   3478999999985

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=2e-11  Score=98.37  Aligned_cols=119  Identities=15%  Similarity=0.133  Sum_probs=81.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+-.+...... ....++...........+++  .++.||||.|.......-..|.         +++++
T Consensus        11 LG~~~VGKSSlV~Rfvk~~F~-e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYy---------RgA~A   80 (200)
T KOG0092|consen   11 LGDSGVGKSSLVLRFVKDQFH-ENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYY---------RGANA   80 (200)
T ss_pred             ECCCCCCchhhhhhhhhCccc-cccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccccee---------cCCcE
Confidence            699999999999887765432 11112222233334445555  5677999999987655544444         69999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchh
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYD  131 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~  131 (256)
                      .|+|+++++......-+.+++.|++..+++  .-+.+|.||+|+.+.+...++
T Consensus        81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~  131 (200)
T KOG0092|consen   81 AIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFE  131 (200)
T ss_pred             EEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHH
Confidence            999999997554455677888888877654  456679999999764554444

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.28  E-value=2.6e-11  Score=100.84  Aligned_cols=109  Identities=12%  Similarity=0.099  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||++++++...  ...+.++. .........++  ...+.||||||..........       ++  .++|
T Consensus         1 vG~~~vGKTsLi~r~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~-------~~--~~ad   69 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDG-------YY--IQGQ   69 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHH-------Hh--cCCC
Confidence            79999999999999997542  12222221 12222222333  467899999998653322221       11  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++..-...-..+++.+.+... +  .|+++|.||+|+.
T Consensus        70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~  112 (200)
T smart00176       70 CAIIMFDVTARVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDVK  112 (200)
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccc
Confidence            99999988863322333456676766542 2  7999999999984

Ran is involved in the active transport of proteins through nuclear pores.

>PLN03108 Rab family protein; Provisional

Probab=99.28  E-value=4.3e-11  Score=100.12  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|.+++........ ++...........+++  ..+.+|||||......       ....++  ..+|+
T Consensus        12 vG~~gvGKStLi~~l~~~~~~~~~~-~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-------~~~~~~--~~ad~   81 (210)
T PLN03108         12 IGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-------ITRSYY--RGAAG   81 (210)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCC-CCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHh--ccCCE
Confidence            6999999999999999875422211 1111111122334444  4578999999643211       111122  47999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+.......  .++++|.||+|+.
T Consensus        82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~  124 (210)
T PLN03108         82 ALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLA  124 (210)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCc
Confidence            999988875332222334555555544333  7899999999985

>cd04111 Rab39 Rab39 subfamily

Probab=99.28  E-value=3.6e-11  Score=100.72  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|.+++......+. ++.+.........+ ++  ..+.+|||||.....       .....++  ..+|
T Consensus         8 vG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~--~~~d   77 (211)
T cd04111           8 IGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------SITRSYY--RNSV   77 (211)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH-------HHHHHHh--cCCc
Confidence            6999999999999999876432221 11112222222233 23  478899999964321       1111222  5789


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++++|+++++....+.-..+++.+.+..... ..++++|.||+|+.+
T Consensus        78 ~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~-~~~iilvgNK~Dl~~  123 (211)
T cd04111          78 GVLLVFDITNRESFEHVHDWLEEARSHIQPH-RPVFILVGHKCDLES  123 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEcccccc
Confidence            9999998876322223344556555554322 256789999999853

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.27  E-value=4e-11  Score=96.47  Aligned_cols=108  Identities=14%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|.+.......    .|..........++..+.+|||||...       +...+..++  .++|+++
T Consensus        20 ~G~~g~GKStLl~~l~~~~~~~~~----~t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~--~~~~~ii   86 (173)
T cd04155          20 LGLDNAGKTTILKQLASEDISHIT----PTQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYF--ENTDCLI   86 (173)
T ss_pred             EccCCCCHHHHHHHHhcCCCcccC----CCCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh--cCCCEEE
Confidence            699999999999999997542211    122222334556788999999999742       112222222  5889999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++.... +......+...+......  -.|+++++||+|+.
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~  128 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLA--GVPVLVFANKQDLA  128 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECCCCc
Confidence            997776421 211122222222221111  27999999999984

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=3.4e-11  Score=97.34  Aligned_cols=115  Identities=15%  Similarity=0.150  Sum_probs=83.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||-|.-.+.+... ..+-..+...+......+++|.  ++.||||.|..........|.         +++|.
T Consensus        15 iGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syY---------R~ahG   84 (205)
T KOG0084|consen   15 IGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYY---------RGAHG   84 (205)
T ss_pred             ECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhc---------cCCCe
Confidence            69999999999999988753 2222222333444555666665  578999999854432222222         69999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG  127 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~  127 (256)
                      |++|++++..+......++++.+.+...++  .+.++|.||+|+.+...
T Consensus        85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~  131 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRV  131 (205)
T ss_pred             EEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhhee
Confidence            999999998666677788999999988776  68999999999854333

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.26  E-value=6.3e-11  Score=98.64  Aligned_cols=112  Identities=14%  Similarity=0.077  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeee-------CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSK-------GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL   72 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~-------~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~   72 (256)
                      +|.+|||||||++.+.+....  ....++.. ........+       ....+.+|||+|......       ....++ 
T Consensus         6 vGd~gVGKTSLi~~~~~~~f~--~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~-------l~~~~y-   75 (202)
T cd04102           6 VGDSGVGKSSLVHLICKNQVL--GRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS-------TRAVFY-   75 (202)
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH-------HHHHHh-
Confidence            699999999999999987532  22222211 111112222       224678999999854321       111122 


Q ss_pred             cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcC-----------------CcccccEEEEEecccCC
Q 025189           73 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG-----------------KQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        73 ~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g-----------------~~~~~~~ivv~Tk~D~~  123 (256)
                       .++|++++|+++++....+.-..+++.+...-+                 ..-..|+++|.||+|+.
T Consensus        76 -r~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~  142 (202)
T cd04102          76 -NQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI  142 (202)
T ss_pred             -CcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence             689999999999874333334566666654311                 11136999999999985

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.26  E-value=5.3e-11  Score=106.27  Aligned_cols=118  Identities=22%  Similarity=0.232  Sum_probs=81.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~   78 (256)
                      +|-|++|||||+|+|+|..++ +.+.-..|-.+......+. |+.+.+-||.||.+.  .+....+..+..| ....+|+
T Consensus       198 vGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~--LP~~LV~AFksTLEE~~~aDl  274 (411)
T COG2262         198 VGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD--LPHPLVEAFKSTLEEVKEADL  274 (411)
T ss_pred             EeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCccc--CChHHHHHHHHHHHHhhcCCE
Confidence            588999999999999998764 3333345566665566665 799999999999863  3334444444433 2258999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|.|++.++....+......+.|.++-..+  .|+++|+||.|..
T Consensus       275 llhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~  317 (411)
T COG2262         275 LLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLL  317 (411)
T ss_pred             EEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEeccccc
Confidence            999977766433333344445555553334  8999999999975

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.24  E-value=5.5e-11  Score=101.40  Aligned_cols=108  Identities=12%  Similarity=0.138  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc--cc---------CC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT--VN---------SF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~--~~---------~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|..|+|||||+|+|+....+.  .+         ++      .+.|.........+++.++.+|||||..+..   ...
T Consensus         5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~---~~~   81 (237)
T cd04168           5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI---AEV   81 (237)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH---HHH
Confidence            5999999999999998642211  11         00      0112223344557789999999999997532   122


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...+      ..+|++++|++... ........+++.+.+. +    .|.++++||+|+.
T Consensus        82 ~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~  129 (237)
T cd04168          82 ERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRKL-N----IPTIIFVNKIDRA  129 (237)
T ss_pred             HHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECcccc
Confidence            2222      47899999977765 3555556666666543 2    7899999999984

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.24  E-value=4.4e-11  Score=103.86  Aligned_cols=108  Identities=15%  Similarity=0.127  Sum_probs=72.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCc--cc---cc------------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERV--VT---VN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~--~~---~~------------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|.+|+|||||+|+|+...-  ..   +.            ...+.|........++++.++++|||||..+..      
T Consensus         5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~------   78 (270)
T cd01886           5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT------   78 (270)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH------
Confidence            69999999999999974211  01   11            011334444556677889999999999986421      


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       ..+..++  ..+|++++|++... .....+..+++.+.+.-     +|.++++||+|+.
T Consensus        79 -~~~~~~l--~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~-----~p~ivviNK~D~~  129 (270)
T cd01886          79 -IEVERSL--RVLDGAVAVFDAVA-GVEPQTETVWRQADRYN-----VPRIAFVNKMDRT  129 (270)
T ss_pred             -HHHHHHH--HHcCEEEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence             1222222  47899999977654 35566667777665442     7889999999984

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04128 Spg1 Spg1p

Probab=99.23  E-value=7.7e-11  Score=96.44  Aligned_cols=109  Identities=17%  Similarity=0.136  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||++++++...  ...+.++. ..........+|  ..+.+|||+|......       ....++  .++|
T Consensus         6 lG~~~vGKTsLi~~~~~~~f--~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-------~~~~~~--~~a~   74 (182)
T cd04128           6 LGDAQIGKTSLMVKYVEGEF--DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN-------MLPLVC--NDAV   74 (182)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH-------hhHHHC--cCCC
Confidence            69999999999999988753  22232222 122223344555  4678999999754321       111111  6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+.-..+++.+.+.....  .+ ++|.||+|+.
T Consensus        75 ~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~  117 (182)
T cd04128          75 AILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF  117 (182)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence            9999988876322222335666665543322  34 6889999985

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04129 Rho2 Rho2 subfamily

Probab=99.23  E-value=1.1e-10  Score=95.65  Aligned_cols=109  Identities=17%  Similarity=0.210  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|+|||||+|.+......  ....++...........++  ..+.+|||||..........   .+      ..+|+
T Consensus         7 vG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---~~------~~a~~   75 (187)
T cd04129           7 VGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---SY------SKAHV   75 (187)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---hc------CCCCE
Confidence            699999999999999854321  1222222222222334444  35789999997654322211   11      57899


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+.+++.. +.+....+++.+.+..+.   .|+++|.||+|+.
T Consensus        76 ~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~  118 (187)
T cd04129          76 ILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLR  118 (187)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhh
Confidence            99999888643 222223466666665432   7999999999984

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04167 Snu114p Snu114p subfamily

Probab=99.22  E-value=1.3e-10  Score=97.38  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc---------cCC---------CCCcceeEEEEeee-----CCeEEEEEeCCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV---------NSF---------QSEALRPVMVSRSK-----GGFTLNIIDTPGLVEAG   57 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~---------~~~---------~~~t~~~~~~~~~~-----~g~~v~liDTPG~~~~~   57 (256)
                      +|..|+|||||+++|++......         +.+         .+.+.........+     .+..+.+|||||..+..
T Consensus         6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~   85 (213)
T cd04167           6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFM   85 (213)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchH
Confidence            69999999999999997532211         000         01111111111211     24678999999987532


Q ss_pred             cCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           58 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        58 ~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                         ......+      ..+|++++|++... ........+++.+..   .+  .++++|+||+|+.
T Consensus        86 ---~~~~~~~------~~aD~~llVvD~~~-~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~  136 (213)
T cd04167          86 ---DEVAAAL------RLSDGVVLVVDVVE-GVTSNTERLIRHAIL---EG--LPIVLVINKIDRL  136 (213)
T ss_pred             ---HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence               1222222      48899999977664 233444444444332   12  7899999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.22  E-value=4.1e-11  Score=95.29  Aligned_cols=111  Identities=16%  Similarity=0.217  Sum_probs=74.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|..|||||||++++.+...  ...+.++. .+........++.  .+.+|||+|.....    ......   +  .+.|
T Consensus         5 vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~~~~~~---~--~~~~   73 (162)
T PF00071_consen    5 VGDSGVGKTSLINRLINGEF--PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFD----SLRDIF---Y--RNSD   73 (162)
T ss_dssp             EESTTSSHHHHHHHHHHSST--TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGH----HHHHHH---H--TTES
T ss_pred             ECCCCCCHHHHHHHHHhhcc--cccccccccccccccccccccccccccccccccccccc----cccccc---c--cccc
Confidence            59999999999999998753  22222222 3334444555554  57899999964221    111111   1  6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++++|+++++..-.+.-..+++.+....+.+  .|+++|.||+|+.+
T Consensus        74 ~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~  118 (162)
T PF00071_consen   74 AIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSD  118 (162)
T ss_dssp             EEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGG
T ss_pred             ccccccccccccccccccccccccccccccc--ccceeeeccccccc
Confidence            9999999987443334457777777777633  68999999999853

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.20  E-value=1.3e-10  Score=113.47  Aligned_cols=107  Identities=14%  Similarity=0.095  Sum_probs=74.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+++|||||+++|.+..+. .+...+.|.....+...+++..++||||||..+....       ..+..  ..+|+++
T Consensus       296 mGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m-------~~rga--~~aDiaI  365 (787)
T PRK05306        296 MGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAM-------RARGA--QVTDIVV  365 (787)
T ss_pred             ECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccchhH-------HHhhh--hhCCEEE
Confidence            699999999999999987653 3333445555555667778899999999998654211       11111  4789999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++.++. ........+......     ..|++|++||+|+.
T Consensus       366 LVVdAddG-v~~qT~e~i~~a~~~-----~vPiIVviNKiDl~  402 (787)
T PRK05306        366 LVVAADDG-VMPQTIEAINHAKAA-----GVPIIVAINKIDKP  402 (787)
T ss_pred             EEEECCCC-CCHhHHHHHHHHHhc-----CCcEEEEEECcccc
Confidence            99888763 334444444433322     27899999999984

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.19  E-value=1.8e-10  Score=96.00  Aligned_cols=111  Identities=12%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee--eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC-c
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI-D   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~--~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~-d   77 (256)
                      +|.+|||||||++.|.+....  ...++++.........  ..+..+.+|||||....   .......+      ... +
T Consensus         6 ~G~~~sGKTsL~~~l~~~~~~--~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---~~~~~~~~------~~~~~   74 (203)
T cd04105           6 LGPSDSGKTALFTKLTTGKYR--STVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---RDKLLETL------KNSAK   74 (203)
T ss_pred             EcCCCCCHHHHHHHHhcCCCC--CccCcEeecceEEEeecCCCCceEEEEECCCCHHH---HHHHHHHH------hccCC
Confidence            699999999999999987532  1122221111111111  23678999999997632   11222222      344 9


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhc----CCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTF----GKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~----g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++||++..+.  ........+.+...+    ......|+++|.||+|+..
T Consensus        75 ~vV~VvD~~~~--~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          75 GIVFVVDSATF--QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             EEEEEEECccc--hhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99999776642  122222222222211    1111279999999999853

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.18  E-value=1.7e-10  Score=100.80  Aligned_cols=116  Identities=22%  Similarity=0.248  Sum_probs=86.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcC----cHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYV----NYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~----~~~~~~~i~~~l~~~~   75 (256)
                      ||-+++|||||+|++...+. .+.+++.||..+....... .+..+++-|.||+.+..+.    ..+.+++|.      +
T Consensus       165 VG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE------R  237 (369)
T COG0536         165 VGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE------R  237 (369)
T ss_pred             ccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH------h
Confidence            69999999999999999875 7889999999888766664 5667999999999997543    457888886      5


Q ss_pred             CcEEEEEEeCCCCCC---CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRV---DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~---~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +.++++|++++...-   .++-..+..+|.+.-..=.-++.+||+||+|..
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~  288 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP  288 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence            678999988774321   222234445555543332348999999999963

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.18  E-value=4.8e-10  Score=94.64  Aligned_cols=108  Identities=15%  Similarity=0.216  Sum_probs=65.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC---------------CCCcceeEEEEeeeC----------CeEEEEEeCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKG----------GFTLNIIDTPGLVE   55 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~---------------~~~t~~~~~~~~~~~----------g~~v~liDTPG~~~   55 (256)
                      +|..++|||||+++|+..........               .+.|.........+.          +..+.+|||||..+
T Consensus         6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~   85 (222)
T cd01885           6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVD   85 (222)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccc
Confidence            58999999999999986432100000               011211111122222          67889999999976


Q ss_pred             CCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           56 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...   .....+      ..+|++++|+++.. ........+++...+.   +  .++++|+||+|+.
T Consensus        86 f~~---~~~~~l------~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~  138 (222)
T cd01885          86 FSS---EVTAAL------RLCDGALVVVDAVE-GVCVQTETVLRQALKE---R--VKPVLVINKIDRL  138 (222)
T ss_pred             cHH---HHHHHH------HhcCeeEEEEECCC-CCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence            321   222222      48999999987765 3455555555544432   2  6899999999974

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.17  E-value=1.2e-10  Score=100.94  Aligned_cols=108  Identities=16%  Similarity=0.269  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--cccCC---------------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--TVNSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--~~~~~---------------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|.+|+|||||+|+|++....  ..+..               ...+.........+++..+++|||||..+.       
T Consensus         5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f-------   77 (268)
T cd04170           5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF-------   77 (268)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH-------
Confidence            699999999999999864211  11110               011222333455678899999999998532       


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...+..++  ..+|++++|++.+. ........+++.+... +    .|.++++||+|..
T Consensus        78 ~~~~~~~l--~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~  129 (268)
T cd04170          78 VGETRAAL--RAADAALVVVSAQS-GVEVGTEKLWEFADEA-G----IPRIIFINKMDRE  129 (268)
T ss_pred             HHHHHHHH--HHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCccC
Confidence            11222222  47899999977765 2344445555554432 2    6899999999974

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.16  E-value=4.8e-11  Score=108.44  Aligned_cols=124  Identities=20%  Similarity=0.257  Sum_probs=91.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHH-HhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIK-GFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~-~~l~~~~~d~v   79 (256)
                      +|-++|||||++|.+...++ .+.++..||......+..+.-..+.++||||+.|-...+...++... ..+. .=--+|
T Consensus       174 cG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA-HLraaV  251 (620)
T KOG1490|consen  174 CGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA-HLRSAV  251 (620)
T ss_pred             ecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH-Hhhhhh
Confidence            58999999999999988776 67788888888888887777788899999999986443332222111 1111 123578


Q ss_pred             EEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCc
Q 025189           80 LYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN  129 (256)
Q Consensus        80 L~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~  129 (256)
                      ||+++++... .+ ++...+++.|+..|..   +++|+|+||+|...+++..
T Consensus       252 LYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~edL~  300 (620)
T KOG1490|consen  252 LYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPEDLD  300 (620)
T ss_pred             eeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccccC
Confidence            9998887633 23 3456788999999976   7899999999997666544

>cd04169 RF3 RF3 subfamily

Probab=99.16  E-value=2.1e-10  Score=99.47  Aligned_cols=108  Identities=10%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--cc-------------cCCC------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--TV-------------NSFQ------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--~~-------------~~~~------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~   59 (256)
                      +|..|+|||||+|+|+....+  ..             .++.      +.+-.......++++.++.+|||||..+..  
T Consensus         8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~--   85 (267)
T cd04169           8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFS--   85 (267)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHH--
Confidence            699999999999999853211  11             1110      111122334567889999999999986432  


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       .+....+      ..+|++++|++... ........+++..... +    .|+++++||+|..
T Consensus        86 -~~~~~~l------~~aD~~IlVvda~~-g~~~~~~~i~~~~~~~-~----~P~iivvNK~D~~  136 (267)
T cd04169          86 -EDTYRTL------TAVDSAVMVIDAAK-GVEPQTRKLFEVCRLR-G----IPIITFINKLDRE  136 (267)
T ss_pred             -HHHHHHH------HHCCEEEEEEECCC-CccHHHHHHHHHHHhc-C----CCEEEEEECCccC
Confidence             1222222      47899999977764 3444445555444332 2    6899999999974

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.16  E-value=1.2e-10  Score=90.84  Aligned_cols=96  Identities=18%  Similarity=0.274  Sum_probs=58.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++.+....    .. .|.     ...+.+   .+|||||...   ........+...  ..++|+++
T Consensus         6 iG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~~---~~iDt~G~~~---~~~~~~~~~~~~--~~~ad~vi   67 (142)
T TIGR02528         6 IGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYND---GAIDTPGEYV---ENRRLYSALIVT--AADADVIA   67 (142)
T ss_pred             ECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEcC---eeecCchhhh---hhHHHHHHHHHH--hhcCCEEE
Confidence            699999999999999987631    11 111     122333   6899999732   112222222222  26899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++.. +..+..+.    +.++    +|+++|+||+|+.
T Consensus        68 lv~d~~~~~-s~~~~~~~----~~~~----~p~ilv~NK~Dl~  101 (142)
T TIGR02528        68 LVQSATDPE-SRFPPGFA----SIFV----KPVIGLVTKIDLA  101 (142)
T ss_pred             EEecCCCCC-cCCChhHH----Hhcc----CCeEEEEEeeccC
Confidence            998886533 22222222    2222    4899999999985

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.15  E-value=2e-10  Score=91.88  Aligned_cols=98  Identities=18%  Similarity=0.292  Sum_probs=58.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|+|||||+|+|.|....  .   ..|.     ...+.+.  .+|||||.....   ......+...+  .++|++|
T Consensus         7 iG~~~~GKstl~~~l~~~~~~--~---~~~~-----~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~~--~~ad~il   69 (158)
T PRK15467          7 VGAVGAGKTTLFNALQGNYTL--A---RKTQ-----AVEFNDK--GDIDTPGEYFSH---PRWYHALITTL--QDVDMLI   69 (158)
T ss_pred             ECCCCCCHHHHHHHHcCCCcc--C---ccce-----EEEECCC--CcccCCccccCC---HHHHHHHHHHH--hcCCEEE
Confidence            699999999999999987521  1   1111     1122222  269999986442   12222222211  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++.+... +....    .+.+. +..  +++++++||+|+.
T Consensus        70 ~v~d~~~~~-s~~~~----~~~~~-~~~--~~ii~v~nK~Dl~  104 (158)
T PRK15467         70 YVHGANDPE-SRLPA----GLLDI-GVS--KRQIAVISKTDMP  104 (158)
T ss_pred             EEEeCCCcc-cccCH----HHHhc-cCC--CCeEEEEEccccC
Confidence            998877432 11111    12222 222  6899999999984

>PLN00023 GTP-binding protein; Provisional

Probab=99.14  E-value=4e-10  Score=99.32  Aligned_cols=113  Identities=18%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeC---------------CeEEEEEeCCCCCCCCcCcHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKG---------------GFTLNIIDTPGLVEAGYVNYQAL   64 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~---------------g~~v~liDTPG~~~~~~~~~~~~   64 (256)
                      +|.+|||||||++.+.+...  ......+. .........++               ...+.||||+|..........  
T Consensus        27 LGdsGVGKTSLI~rf~~g~F--~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~--  102 (334)
T PLN00023         27 VGDSGVGKSSLVHLIVKGSS--IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSL--  102 (334)
T ss_pred             ECCCCCcHHHHHHHHhcCCc--ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHH--
Confidence            69999999999999998753  12221111 11111222322               256899999997543321111  


Q ss_pred             HHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCC----------cccccEEEEEecccCCC
Q 025189           65 ELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK----------QIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        65 ~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~----------~~~~~~ivv~Tk~D~~~  124 (256)
                           ++  .++|++|+|+++++....+.-..+++.+....+.          ..-.+++||.||+|+.+
T Consensus       103 -----yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023        103 -----FY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             -----hc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence                 12  6899999999998744334445677777765320          01268999999999853

>smart00053 DYNc Dynamin, GTPase

Probab=99.14  E-value=6.4e-10  Score=94.67  Aligned_cols=74  Identities=23%  Similarity=0.340  Sum_probs=46.4

Q ss_pred             eEEEEEeCCCCCCCCc--Cc----HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHH-HHHHHHHHhhcCCcccccEEE
Q 025189           43 FTLNIIDTPGLVEAGY--VN----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLL  115 (256)
Q Consensus        43 ~~v~liDTPG~~~~~~--~~----~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~-~~~~~~l~~~~g~~~~~~~iv  115 (256)
                      ..++++||||+.....  ..    ..+.+.+..++. ...+++|+|++... .+...+ .++.+.+....     +++++
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~-~~~~IIL~Vvda~~-d~~~~d~l~ia~~ld~~~-----~rti~  197 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS-KEECLILAVTPANV-DLANSDALKLAKEVDPQG-----ERTIG  197 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh-CccCeEEEEEECCC-CCCchhHHHHHHHHHHcC-----CcEEE
Confidence            3579999999975321  11    123333444442 24568899966543 344444 46666665542     89999


Q ss_pred             EEecccCC
Q 025189          116 VLTHAQLC  123 (256)
Q Consensus       116 v~Tk~D~~  123 (256)
                      |+||+|..
T Consensus       198 ViTK~D~~  205 (240)
T smart00053      198 VITKLDLM  205 (240)
T ss_pred             EEECCCCC
Confidence            99999986

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.14  E-value=2.4e-10  Score=94.67  Aligned_cols=119  Identities=19%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||++...+++..  .+..+.++..........++|.  .+.|+||+|..+.....+.++         ...|+
T Consensus         9 lG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~---------~~~~g   77 (196)
T KOG0395|consen    9 LGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYI---------RNGDG   77 (196)
T ss_pred             ECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhh---------ccCcE
Confidence            6999999999999988876  3455666665555556666654  567999999544432222222         57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchh
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYD  131 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~  131 (256)
                      |++|+++++....+....+.+.|.+..+.+ +.|+++|.||+|+......+.+
T Consensus        78 F~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~e  129 (196)
T KOG0395|consen   78 FLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEE  129 (196)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHH
Confidence            999999998544555667777776655544 3799999999999644444433

>PLN03127 Elongation factor Tu; Provisional

Probab=99.14  E-value=1.7e-09  Score=100.22  Aligned_cols=108  Identities=10%  Similarity=0.071  Sum_probs=72.1

Q ss_pred             CCCCCCCHHHHHHHHhCC------Cccccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGE------RVVTVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~------~~~~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+++|.+.      ......         ...+.|........+.++.+++++||||..+       ++.
T Consensus        67 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-------f~~  139 (447)
T PLN03127         67 IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-------YVK  139 (447)
T ss_pred             ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-------hHH
Confidence            589999999999999842      111110         1134455555555666788999999999853       333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++.+. .....+.+.+..+... |    .+ +++++||+|+.
T Consensus       140 ~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv  190 (447)
T PLN03127        140 NMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVVFLNKVDVV  190 (447)
T ss_pred             HHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEeeccC
Confidence            333222  36999999977654 3566677777766554 3    45 67899999985

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.13  E-value=3.8e-10  Score=107.59  Aligned_cols=107  Identities=15%  Similarity=0.108  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+++|||||+|+|.+..++. +...+.|.....+...+++ ..+++|||||..+....       ..+.  ...+|++
T Consensus        93 ~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~-------r~rg--a~~aDia  162 (587)
T TIGR00487        93 MGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSM-------RARG--AKVTDIV  162 (587)
T ss_pred             ECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchhhH-------HHhh--hccCCEE
Confidence            6999999999999999876532 3334455555455555644 48999999998643211       1111  1578999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++.++. ........+......   +  .|+++++||+|+.
T Consensus       163 ILVVda~dg-v~~qT~e~i~~~~~~---~--vPiIVviNKiDl~  200 (587)
T TIGR00487       163 VLVVAADDG-VMPQTIEAISHAKAA---N--VPIIVAINKIDKP  200 (587)
T ss_pred             EEEEECCCC-CCHhHHHHHHHHHHc---C--CCEEEEEECcccc
Confidence            999887753 333444444333221   2  7899999999984

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.13  E-value=2.8e-10  Score=105.08  Aligned_cols=110  Identities=15%  Similarity=0.131  Sum_probs=71.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc------------------------------CCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN------------------------------SFQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|..++|||||+|+|++...+...                              ...+.|........+.++..+++|||
T Consensus        12 iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDt   91 (425)
T PRK12317         12 IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDC   91 (425)
T ss_pred             ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEEC
Confidence            699999999999999954321110                              02345666666667778999999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCC-CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~-r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+..       ..+...+  ..+|++|+|++.++. .+...+...+..+. .++.   +++++++||+|+.
T Consensus        92 pG~~~~~-------~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~---~~iivviNK~Dl~  152 (425)
T PRK12317         92 PGHRDFV-------KNMITGA--SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI---NQLIVAINKMDAV  152 (425)
T ss_pred             CCcccch-------hhHhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC---CeEEEEEEccccc
Confidence            9974321       1111111  479999999887641 13333444444333 3332   4789999999985

>PRK09866 hypothetical protein; Provisional

Probab=99.13  E-value=1.3e-09  Score=102.92  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=50.0

Q ss_pred             eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      .++.++||||+......  ..-+.+.+.+  .++|+||||++.+. ..+..|..+++.+.+. ++.  .|+++|+||+|.
T Consensus       230 ~QIIFVDTPGIhk~~~~--~L~k~M~eqL--~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKIDl  301 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQP--HLQKMLNQQL--ARASAVLAVLDYTQ-LKSISDEEVREAILAV-GQS--VPLYVLVNKFDQ  301 (741)
T ss_pred             CCEEEEECCCCCCccch--HHHHHHHHHH--hhCCEEEEEEeCCC-CCChhHHHHHHHHHhc-CCC--CCEEEEEEcccC
Confidence            35789999999865322  1111222222  58999999966653 3678888888888765 321  489999999998


Q ss_pred             C
Q 025189          123 C  123 (256)
Q Consensus       123 ~  123 (256)
                      .
T Consensus       302 ~  302 (741)
T PRK09866        302 Q  302 (741)
T ss_pred             C
Confidence            5

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=4.3e-10  Score=90.92  Aligned_cols=120  Identities=15%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-CCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~-~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|..+|||||||+.++-....  ..+. ....+.......+.|+  .+.+|||.|.......-..|+         ++..
T Consensus        28 lGdqsVGKTslItRf~yd~fd--~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~---------Rds~   96 (221)
T KOG0094|consen   28 LGDQSVGKTSLITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI---------RDSS   96 (221)
T ss_pred             EccCccchHHHHHHHHHhhhc--ccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhc---------cCCe
Confidence            699999999999999876532  1222 2222333344455554  568999999865443322222         6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV  132 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~  132 (256)
                      ++++|+++.+....+...++++.+...-|.+- ..+++|.||.|+.+.++.+.++
T Consensus        97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eE  150 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEE  150 (221)
T ss_pred             EEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHH
Confidence            99999999985556677788888887777532 5678899999997655544443

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.11  E-value=8.4e-10  Score=88.19  Aligned_cols=105  Identities=16%  Similarity=0.061  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++.+++....  ....+ +.........++|  ..+.+|||+|..+     ..+   .      ...|+
T Consensus         6 vG~~gvGKTsli~~~~~~~f~--~~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~---~------~~~~~   68 (158)
T cd04103           6 VGNLQSGKSALVHRYLTGSYV--QLESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQF---A------SWVDA   68 (158)
T ss_pred             ECCCCCcHHHHHHHHHhCCCC--CCCCC-CccceEEEEEECCEEEEEEEEECCCCCc-----hhH---H------hcCCE
Confidence            699999999999998875421  11222 1222223445666  4578999999853     111   1      47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+++.+...... ...|+++|.||.|+.
T Consensus        69 ~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~  112 (158)
T cd04103          69 VIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAIS  112 (158)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence            99999998744223334567777665421 126899999999973

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.11  E-value=1.6e-09  Score=101.03  Aligned_cols=109  Identities=10%  Similarity=0.061  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc---------------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN---------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+++|++......+               ...+.|.+........++..+++|||||..+       +..
T Consensus        87 iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~-------f~~  159 (478)
T PLN03126         87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-------YVK  159 (478)
T ss_pred             ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-------HHH
Confidence            589999999999999963211100               0112333333334456788999999999743       333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++.+. -......+.+..+... |.   +++++++||+|+.
T Consensus       160 ~~~~g~--~~aD~ailVVda~~-G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~  210 (478)
T PLN03126        160 NMITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQV  210 (478)
T ss_pred             HHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEeccccc
Confidence            333322  47899999977664 2445555566554433 32   4588999999985

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.11  E-value=1.4e-09  Score=103.93  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc--ccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT--VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~--~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|..++|||||+|+|+|.....  .....+.|..........++..+.+|||||..       .+...+....  .++|+
T Consensus         6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~--~~aD~   76 (581)
T TIGR00475         6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG--GGIDA   76 (581)
T ss_pred             ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--ccCCE
Confidence            5999999999999999864211  11122445555555567778899999999963       2333332222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|++.+.. ......+.+..+. ..|-   +++++|+||+|+.
T Consensus        77 aILVVDa~~G-~~~qT~ehl~il~-~lgi---~~iIVVlNK~Dlv  116 (581)
T TIGR00475        77 ALLVVDADEG-VMTQTGEHLAVLD-LLGI---PHTIVVITKADRV  116 (581)
T ss_pred             EEEEEECCCC-CcHHHHHHHHHHH-HcCC---CeEEEEEECCCCC
Confidence            9999887752 3344445554443 3332   3599999999985

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.10  E-value=3.8e-10  Score=94.34  Aligned_cols=112  Identities=18%  Similarity=0.170  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|..|||||||+|++.+......... ..+...........  ..++.+|||+|..+......    ...     .++++
T Consensus        11 ~G~~g~GKTtl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~----~y~-----~~~~~   80 (219)
T COG1100          11 LGDGGVGKTTLLNRLVGDEFPEGYPP-TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRP----EYY-----RGANG   80 (219)
T ss_pred             EcCCCccHHHHHHHHhcCcCcccCCC-ceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHH----HHh-----cCCCE
Confidence            59999999999999999865322221 11111111111122  45689999999865431111    111     68999


Q ss_pred             EEEEEeCCC-CCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~-~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|++... .++.+.-..+.+.+....+..  .++++|.||+|+..
T Consensus        81 ~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~  125 (219)
T COG1100          81 ILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFD  125 (219)
T ss_pred             EEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEeccccccc
Confidence            999987776 445566666777777765433  79999999999863

>cd01900 YchF YchF subfamily

Probab=99.10  E-value=4.3e-10  Score=97.53  Aligned_cols=79  Identities=20%  Similarity=0.245  Sum_probs=61.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-----------------EEEEEeCCCCCCCCcCcH--
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-----------------TLNIIDTPGLVEAGYVNY--   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~v~liDTPG~~~~~~~~~--   61 (256)
                      +|.++||||||+|+|++.+. .+++++.+|..+......+.+.                 ++.++||||+..+.....  
T Consensus         4 vG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~gl   82 (274)
T cd01900           4 VGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL   82 (274)
T ss_pred             eCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHH
Confidence            69999999999999999987 7888899998887766666543                 489999999987654332  


Q ss_pred             --HHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189           62 --QALELIKGFLLNKTIDVLLYADRLD   86 (256)
Q Consensus        62 --~~~~~i~~~l~~~~~d~vL~v~~~d   86 (256)
                        +++..+      ..+|++++|++..
T Consensus        83 g~~fL~~i------~~~D~li~VV~~f  103 (274)
T cd01900          83 GNKFLSHI------REVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHH------HhCCEEEEEEeCc
Confidence              233333      5899999997763

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK10218 GTP-binding protein; Provisional

Probab=99.09  E-value=1.5e-09  Score=103.85  Aligned_cols=108  Identities=16%  Similarity=0.190  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+++|++........               ..+.|.........+++..+.+|||||..+...   ....
T Consensus        11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~---~v~~   87 (607)
T PRK10218         11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG---EVER   87 (607)
T ss_pred             ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH---HHHH
Confidence            5899999999999999742111110               112233334455677899999999999876431   1222


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+      ..+|++++|++... .........+..+... +    .|.++++||+|..
T Consensus        88 ~l------~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~  133 (607)
T PRK10218         88 VM------SMVDSVLLVVDAFD-GPMPQTRFVTKKAFAY-G----LKPIVVINKVDRP  133 (607)
T ss_pred             HH------HhCCEEEEEEeccc-CccHHHHHHHHHHHHc-C----CCEEEEEECcCCC
Confidence            22      58999999977765 3444555555554443 2    6789999999974

>PRK12736 elongation factor Tu; Reviewed

Probab=99.09  E-value=2.7e-09  Score=97.54  Aligned_cols=109  Identities=12%  Similarity=0.073  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCc------cccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERV------VTVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~------~~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+++|++...      +...         ...+.|..........++..++++||||..       +++.
T Consensus        18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~-------~f~~   90 (394)
T PRK12736         18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA-------DYVK   90 (394)
T ss_pred             EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH-------HHHH
Confidence            58999999999999997321      0000         012344444444444567889999999963       3333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++.+. .....+...+..+... |.   +++++++||+|+.
T Consensus        91 ~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g~---~~~IvviNK~D~~  141 (394)
T PRK12736         91 NMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-GV---PYLVVFLNKVDLV  141 (394)
T ss_pred             HHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-CC---CEEEEEEEecCCc
Confidence            332222  47899999977664 2455666666665544 31   3478899999985

>PRK00049 elongation factor Tu; Reviewed

Probab=99.09  E-value=2.5e-09  Score=97.87  Aligned_cols=108  Identities=11%  Similarity=0.087  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc------ccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV------TVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~------~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+++|++....      ...         ...+.|..........++.+++++||||..       ++..
T Consensus        18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-------~f~~   90 (396)
T PRK00049         18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-------DYVK   90 (396)
T ss_pred             EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH-------HHHH
Confidence            588999999999999973110      000         012344444444445577889999999973       3333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccE-EEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS-LLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~-ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++.+. .....+...+..+... +    .+. ++++||+|+.
T Consensus        91 ~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~  141 (396)
T PRK00049         91 NMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV  141 (396)
T ss_pred             HHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHHc-C----CCEEEEEEeecCCc
Confidence            333322  58999999977664 3566777777666544 3    465 4689999985

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=8.4e-10  Score=90.35  Aligned_cols=112  Identities=16%  Similarity=0.144  Sum_probs=79.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||+++-.+..... ..+-...-.-.......+.+|.  .+.+|||.|.......-..|.         ++++.
T Consensus        18 iGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy---------rgA~g   87 (207)
T KOG0078|consen   18 IGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY---------RGAMG   87 (207)
T ss_pred             ECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH---------hhcCe
Confidence            69999999999988876643 2222222223333344456665  568999999875442222222         69999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++.+....+....+++.+.+.-.++  .+.++|.||+|+..
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~  131 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEE  131 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccc
Confidence            999999988666677777999999987665  78999999999854

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=5.8e-10  Score=91.20  Aligned_cols=116  Identities=14%  Similarity=0.099  Sum_probs=83.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.||||||-|+-.+...+. .....++...+.......++|.  +..||||.|..........|.         +++..
T Consensus        20 iGDS~VGKsnLlsRftrnEF-~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY---------rgAvG   89 (222)
T KOG0087|consen   20 IGDSAVGKSNLLSRFTRNEF-SLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY---------RGAVG   89 (222)
T ss_pred             eCCCccchhHHHHHhccccc-CcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh---------cccce
Confidence            69999999999988876543 3332333334444455566665  458999999976654443333         68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGL  128 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~  128 (256)
                      .|+|+++......+...+++++|+.....+  ..+++|.||+|+...+..
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV  137 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAV  137 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhcccc
Confidence            999999986445567788999999987666  789999999999654443

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.06  E-value=1.7e-09  Score=103.37  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-----cc----------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT-----VN----------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~-----~~----------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+++|+...-..     +.          ...+.|.........+++..+++|||||..+..       .
T Consensus         7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~-------~   79 (594)
T TIGR01394         7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG-------G   79 (594)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH-------H
Confidence            6899999999999998632110     00          011234444455677889999999999986532       2


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++... ........+++.+.+. +    .|.++|+||+|+.
T Consensus        80 ev~~~l--~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~  129 (594)
T TIGR01394        80 EVERVL--GMVDGVLLLVDASE-GPMPQTRFVLKKALEL-G----LKPIVVINKIDRP  129 (594)
T ss_pred             HHHHHH--HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHC-C----CCEEEEEECCCCC
Confidence            222222  47899999977764 2445555666655543 2    6789999999984

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.06  E-value=8e-10  Score=91.50  Aligned_cols=109  Identities=15%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             CCCCCCCHHHHHH-HHhCCCcc---cccCCCCCcc--eeEEEE--------eeeCC--eEEEEEeCCCCCCCCcCcHHHH
Q 025189            1 MGKGGVGKSSTVN-SVIGERVV---TVNSFQSEAL--RPVMVS--------RSKGG--FTLNIIDTPGLVEAGYVNYQAL   64 (256)
Q Consensus         1 vG~tG~GKSSliN-~l~g~~~~---~~~~~~~~t~--~~~~~~--------~~~~g--~~v~liDTPG~~~~~~~~~~~~   64 (256)
                      +|.+|||||||++ .+.+....   ....+.++..  ......        ..++|  ..+.+|||+|..+.  ...   
T Consensus         8 vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~~~---   82 (195)
T cd01873           8 VGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--DRR---   82 (195)
T ss_pred             ECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--hhc---
Confidence            6999999999996 44433210   1112222221  111101        12344  46789999998531  100   


Q ss_pred             HHHHHhhhcCCCcEEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           65 ELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        65 ~~i~~~l~~~~~d~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                          .+  -+++|++++|+++++.. +......+++.+.+... +  .|+++|.||+|+.
T Consensus        83 ----~~--~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~  133 (195)
T cd01873          83 ----FA--YGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLR  133 (195)
T ss_pred             ----cc--CCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcc
Confidence                01  16899999999998633 22222246666665532 2  6899999999984

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.06  E-value=2.1e-09  Score=89.44  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=42.3

Q ss_pred             eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      ..+.+|||||..       .+...+...+  ..+|++++|++++...........+..+.. .+.   +++++|+||+|+
T Consensus        83 ~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK~Dl  149 (203)
T cd01888          83 RHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNKIDL  149 (203)
T ss_pred             cEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEchhc
Confidence            789999999952       2333332222  478999999877642122333444444432 221   578999999998


Q ss_pred             C
Q 025189          123 C  123 (256)
Q Consensus       123 ~  123 (256)
                      .
T Consensus       150 ~  150 (203)
T cd01888         150 V  150 (203)
T ss_pred             c
Confidence            4

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.05  E-value=5.9e-10  Score=108.18  Aligned_cols=107  Identities=10%  Similarity=0.090  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee----CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK----GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~----~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|+|||||+++|.+...+ .+...+.|.....+...+    .+..+++|||||...       +.....+.+  ..+
T Consensus       250 vGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-------F~~mr~rg~--~~a  319 (742)
T CHL00189        250 LGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-------FSSMRSRGA--NVT  319 (742)
T ss_pred             ECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHH-------HHHHHHHHH--HHC
Confidence            699999999999999987653 222233443333333322    358899999999742       222222222  579


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|+++++ .........+..+...     ..|+++++||+|+.
T Consensus       320 DiaILVVDA~d-Gv~~QT~E~I~~~k~~-----~iPiIVViNKiDl~  360 (742)
T CHL00189        320 DIAILIIAADD-GVKPQTIEAINYIQAA-----NVPIIVAINKIDKA  360 (742)
T ss_pred             CEEEEEEECcC-CCChhhHHHHHHHHhc-----CceEEEEEECCCcc
Confidence            99999988775 3334444444444322     27899999999985

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.05  E-value=6.6e-09  Score=95.06  Aligned_cols=109  Identities=11%  Similarity=0.101  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCC------Cccccc---------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGE------RVVTVN---------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~------~~~~~~---------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+++|++.      ..+...         ...+.|..........++.++++|||||..+       +..
T Consensus        18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~-------f~~   90 (394)
T TIGR00485        18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-------YVK   90 (394)
T ss_pred             EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH-------HHH
Confidence            588999999999999853      111100         0134455554444555678899999999753       222


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++++. .....+.+.+..+... |-   +++++++||+|+.
T Consensus        91 ~~~~~~--~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~  141 (394)
T TIGR00485        91 NMITGA--AQMDGAILVVSATD-GPMPQTREHILLARQV-GV---PYIVVFLNKCDMV  141 (394)
T ss_pred             HHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEecccC
Confidence            332222  47899999977764 2455666666665443 31   3456789999985

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.05  E-value=1.3e-09  Score=106.28  Aligned_cols=108  Identities=14%  Similarity=0.117  Sum_probs=74.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-----ccC------------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT-----VNS------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|..++|||||+|+|++.....     +..            ..+.|........++++.++++|||||..+...   +.
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~---~~   92 (689)
T TIGR00484        16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV---EV   92 (689)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH---HH
Confidence            6999999999999998532110     111            123455555667788999999999999976321   22


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...+      ..+|++++|++... .....+..++..+.+..     .|+++++||+|+.
T Consensus        93 ~~~l------~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~p~ivviNK~D~~  140 (689)
T TIGR00484        93 ERSL------RVLDGAVAVLDAVG-GVQPQSETVWRQANRYE-----VPRIAFVNKMDKT  140 (689)
T ss_pred             HHHH------HHhCEEEEEEeCCC-CCChhHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence            2222      47899999977664 34555666666655432     7889999999985

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.04  E-value=1e-09  Score=104.65  Aligned_cols=107  Identities=13%  Similarity=0.052  Sum_probs=65.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee------------------eCCeEEEEEeCCCCCCCCcCcHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS------------------KGGFTLNIIDTPGLVEAGYVNYQ   62 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~------------------~~g~~v~liDTPG~~~~~~~~~~   62 (256)
                      +|.+++|||||+|+|.+..+.. +...+.|+........                  .....+++|||||......    
T Consensus        10 iG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~----   84 (590)
T TIGR00491        10 LGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN----   84 (590)
T ss_pred             ECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH----
Confidence            6999999999999999986532 1111222211111110                  1112488999999753221    


Q ss_pred             HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                         ....+.  ..+|++++|+++++ .....+...+..+...     -.|+++++||+|+.
T Consensus        85 ---l~~~~~--~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~  134 (590)
T TIGR00491        85 ---LRKRGG--ALADLAILIVDINE-GFKPQTQEALNILRMY-----KTPFVVAANKIDRI  134 (590)
T ss_pred             ---HHHHHH--hhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence               111111  58999999988775 3445555555555432     26899999999985

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.04  E-value=8.3e-10  Score=89.77  Aligned_cols=107  Identities=12%  Similarity=0.118  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|..|+||||+++.|.......+    ..|.........+++..+.+||.+|-......-+.+.         .++|+++
T Consensus        20 lGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~---------~~~~~iI   86 (175)
T PF00025_consen   20 LGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYF---------QNADGII   86 (175)
T ss_dssp             EESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGH---------TTESEEE
T ss_pred             ECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEeccccccccccceeec---------cccceeE
Confidence            59999999999999997654221    1233344556678999999999999643221111222         5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~  123 (256)
                      ||++..+..   .-.+..+.|.+.+...  .-.|+++++||.|..
T Consensus        87 fVvDssd~~---~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~  128 (175)
T PF00025_consen   87 FVVDSSDPE---RLQEAKEELKELLNDPELKDIPILILANKQDLP  128 (175)
T ss_dssp             EEEETTGGG---GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred             EEEecccce---eecccccchhhhcchhhcccceEEEEecccccc
Confidence            997666422   1222333344443321  137999999999974

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=1.2e-09  Score=87.69  Aligned_cols=117  Identities=15%  Similarity=0.141  Sum_probs=76.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||.|+-.++.+..-++... +-..+.-.....+++  .++.||||.|.........       .+.  +++-.
T Consensus        12 iGd~gVGKSclllrf~~krF~~~hd~-TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~-------syY--r~a~G   81 (216)
T KOG0098|consen   12 IGDTGVGKSCLLLRFTDKRFQPVHDL-TIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTR-------SYY--RGAAG   81 (216)
T ss_pred             ECCCCccHHHHHHHHhccCccccccc-eeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHH-------HHh--ccCcc
Confidence            69999999999999998864333321 111111122334554  4678999999864332222       222  58889


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCc
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN  129 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~  129 (256)
                      .|+|++++..........++..+++...++  .-++++.||+|+...+..+
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs  130 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVS  130 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhcccccc
Confidence            999999986444455567888888776555  5678888999996444433

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.03  E-value=3.9e-09  Score=89.26  Aligned_cols=72  Identities=15%  Similarity=0.091  Sum_probs=52.2

Q ss_pred             eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEe
Q 025189           39 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT  118 (256)
Q Consensus        39 ~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~T  118 (256)
                      +..+..++++||||..       .+.......+....+|++++|++.+. .....+..++..+...-     .|+++|+|
T Consensus        80 ~~~~~~i~liDtpG~~-------~~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~-----ip~ivvvN  146 (224)
T cd04165          80 EKSSKLVTFIDLAGHE-------RYLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALN-----IPVFVVVT  146 (224)
T ss_pred             eeCCcEEEEEECCCcH-------HHHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCEEEEEE
Confidence            4557889999999964       23333333333246899999977764 46788888888776653     68999999


Q ss_pred             cccCC
Q 025189          119 HAQLC  123 (256)
Q Consensus       119 k~D~~  123 (256)
                      |+|+.
T Consensus       147 K~D~~  151 (224)
T cd04165         147 KIDLA  151 (224)
T ss_pred             Ccccc
Confidence            99984

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.03  E-value=8.2e-10  Score=85.45  Aligned_cols=110  Identities=14%  Similarity=0.103  Sum_probs=76.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+-.+.... +..+-......+.......++|  +++.||||.|......    +...+-     +++|.
T Consensus        14 igDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt----itstyy-----rgthg   83 (198)
T KOG0079|consen   14 IGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT----ITSTYY-----RGTHG   83 (198)
T ss_pred             ecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH----HHHHHc-----cCCce
Confidence            6899999999997776653 2222222223334444455555  4678999999753322    222221     69999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++.......+-.++++.+...+..   .+-++|.||.|..
T Consensus        84 v~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~  125 (198)
T KOG0079|consen   84 VIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDP  125 (198)
T ss_pred             EEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCc
Confidence            99999998766667788999999888763   6779999999984

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.02  E-value=1.4e-09  Score=97.55  Aligned_cols=79  Identities=22%  Similarity=0.267  Sum_probs=60.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCcCcH--
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGYVNY--   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~~~~--   61 (256)
                      ||.++||||||+|+|++.. +.+++++.+|..+......+.+                 .++.++||||+..+....+  
T Consensus         8 VG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~gl   86 (364)
T PRK09601          8 VGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL   86 (364)
T ss_pred             ECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHH
Confidence            6999999999999999998 5788889999888766555543                 2589999999987544332  


Q ss_pred             --HHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189           62 --QALELIKGFLLNKTIDVLLYADRLD   86 (256)
Q Consensus        62 --~~~~~i~~~l~~~~~d~vL~v~~~d   86 (256)
                        +++..+      ..+|++++|++..
T Consensus        87 g~~fL~~i------~~aD~li~VVd~f  107 (364)
T PRK09601         87 GNQFLANI------REVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHH------HhCCEEEEEEeCC
Confidence              233333      5899999997763

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.02  E-value=4.2e-09  Score=88.71  Aligned_cols=110  Identities=14%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT------------------------VNS------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|..|+|||||+.+|+...-+.                        ..+      ..+.|.........+++..+++|||
T Consensus         5 ~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDt   84 (219)
T cd01883           5 IGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDA   84 (219)
T ss_pred             ecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEEC
Confidence            6999999999999997431100                        000      1234555556667789999999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC------CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r------~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+       +...+...+  ..+|++++|++..+..      ........+... ...+.   +++++|+||+|+.
T Consensus        85 pG~~~-------~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~Dl~  150 (219)
T cd01883          85 PGHRD-------FVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKMDDV  150 (219)
T ss_pred             CChHH-------HHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEccccc
Confidence            99743       112222222  4799999997776521      111223333322 23332   6899999999985

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.01  E-value=7.4e-10  Score=86.85  Aligned_cols=111  Identities=15%  Similarity=0.094  Sum_probs=74.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      ||.+|||||||+-++.....-...+ .....+.......++|.  ++.||||.|..........|.         +++..
T Consensus        17 IGeSGVGKSSLllrFv~~~fd~~~~-~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyy---------RgaqG   86 (209)
T KOG0080|consen   17 IGESGVGKSSLLLRFVSNTFDDLHP-TTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYY---------RGAQG   86 (209)
T ss_pred             EccCCccHHHHHHHHHhcccCccCC-ceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHh---------ccCce
Confidence            6999999999999988765422221 11223344455566654  678999999987665555554         68999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++.... |... ..+++++....-++ -.--++|.||.|..
T Consensus        87 iIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~-diikmlVgNKiDke  130 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKL-DIWLKELDLYSTNP-DIIKMLVGNKIDKE  130 (209)
T ss_pred             eEEEEEccchhhHHhH-HHHHHHHHhhcCCc-cHhHhhhcccccch
Confidence            99999998633 4333 45666666554321 13357899999964

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.00  E-value=6.5e-09  Score=99.85  Aligned_cols=109  Identities=19%  Similarity=0.176  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--cCCCCCcceeEEEEee-eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV--NSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~--~~~~~~t~~~~~~~~~-~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|..++|||||+|+|+|.+....  ....+.|......... .++..+.+|||||..       .+...+...+  .++|
T Consensus         6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------~fi~~m~~g~--~~~D   76 (614)
T PRK10512          6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------KFLSNMLAGV--GGID   76 (614)
T ss_pred             ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------HHHHHHHHHh--hcCC
Confidence            59999999999999998642111  1112334333322222 257788999999973       2333333222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|++.+. .....+.+.+..+.. +|.   .++++|+||+|+.
T Consensus        77 ~~lLVVda~e-g~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv  117 (614)
T PRK10512         77 HALLVVACDD-GVMAQTREHLAILQL-TGN---PMLTVALTKADRV  117 (614)
T ss_pred             EEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCccC
Confidence            9999988775 355666666665543 342   4568999999985

>PTZ00258 GTP-binding protein; Provisional

Probab=99.00  E-value=1.5e-09  Score=98.26  Aligned_cols=78  Identities=26%  Similarity=0.322  Sum_probs=60.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-----------------CeEEEEEeCCCCCCCCcCcH--
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----------------GFTLNIIDTPGLVEAGYVNY--   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-----------------g~~v~liDTPG~~~~~~~~~--   61 (256)
                      ||.+|||||||+|+|++..+ .+++++.+|..+......+.                 +.++.++||||+........  
T Consensus        27 VG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gL  105 (390)
T PTZ00258         27 VGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGL  105 (390)
T ss_pred             ECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHH
Confidence            69999999999999998875 78889999988877666554                 23589999999987543322  


Q ss_pred             --HHHHHHHHhhhcCCCcEEEEEEeC
Q 025189           62 --QALELIKGFLLNKTIDVLLYADRL   85 (256)
Q Consensus        62 --~~~~~i~~~l~~~~~d~vL~v~~~   85 (256)
                        .++..+      ..+|++++|++.
T Consensus       106 g~~fL~~I------r~aD~il~VVd~  125 (390)
T PTZ00258        106 GNAFLSHI------RAVDGIYHVVRA  125 (390)
T ss_pred             HHHHHHHH------HHCCEEEEEEeC
Confidence              334444      489999999876

>PRK12735 elongation factor Tu; Reviewed

Probab=98.99  E-value=5.5e-09  Score=95.61  Aligned_cols=108  Identities=11%  Similarity=0.107  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCC------Ccccc-c--------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGE------RVVTV-N--------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~------~~~~~-~--------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+|+|++.      ..+.. .        ...+.|........+.++.+++++||||..       ++..
T Consensus        18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-------~f~~   90 (396)
T PRK12735         18 IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-------DYVK   90 (396)
T ss_pred             ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH-------HHHH
Confidence            599999999999999972      11000 0        012334444444445577889999999973       3333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++.+. .....+.+.+..+... |    .+ +++++||+|+.
T Consensus        91 ~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~  141 (396)
T PRK12735         91 NMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV  141 (396)
T ss_pred             HHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEecCCc
Confidence            333322  47899999977764 2455555566554432 3    45 55689999985

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.99  E-value=5.9e-10  Score=96.79  Aligned_cols=79  Identities=23%  Similarity=0.379  Sum_probs=66.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~~   76 (256)
                      ||.++||||||+|.|++.+. .+++++.+|..+.....+++|.++.++|+||+.++....    .+++..+      +.+
T Consensus        69 VGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~------R~A  141 (365)
T COG1163          69 VGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA------RNA  141 (365)
T ss_pred             EcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee------ccC
Confidence            69999999999999999875 678889999999999999999999999999999865433    3455444      589


Q ss_pred             cEEEEEEeCC
Q 025189           77 DVLLYADRLD   86 (256)
Q Consensus        77 d~vL~v~~~d   86 (256)
                      |+|++|+++.
T Consensus       142 DlIiiVld~~  151 (365)
T COG1163         142 DLIIIVLDVF  151 (365)
T ss_pred             CEEEEEEecC
Confidence            9999996665

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.99  E-value=2e-09  Score=96.98  Aligned_cols=112  Identities=13%  Similarity=0.210  Sum_probs=78.0

Q ss_pred             CCCCCCCHHHHHHHHhCC----Ccc-----------cccCCCC---CcceeEE---EEeeeC-----CeEEEEEeCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGE----RVV-----------TVNSFQS---EALRPVM---VSRSKG-----GFTLNIIDTPGLV   54 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~----~~~-----------~~~~~~~---~t~~~~~---~~~~~~-----g~~v~liDTPG~~   54 (256)
                      +|+.++|||||||++++.    +++           .+++.++   +|.++..   ...++.     ..+++++||+|+.
T Consensus        23 vGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~  102 (492)
T TIGR02836        23 VGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYT  102 (492)
T ss_pred             EcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcc
Confidence            699999999999999998    555           4555556   6666655   222221     2578999999999


Q ss_pred             CCCcCcH----H----------------------HHHHHHHhhhcCCCcEEEEEE-eCC-----CCCCCHHHHHHHHHHH
Q 025189           55 EAGYVNY----Q----------------------ALELIKGFLLNKTIDVLLYAD-RLD-----AYRVDDLDRQIIKAVT  102 (256)
Q Consensus        55 ~~~~~~~----~----------------------~~~~i~~~l~~~~~d~vL~v~-~~d-----~~r~~~~~~~~~~~l~  102 (256)
                      +.+....    .                      ..+.|.     .+.|.-|+|. +-+     .....+.+.++++.|+
T Consensus       103 v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-----dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk  177 (492)
T TIGR02836       103 VKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-----EHSTIGVVVTTDGTITDIPREDYVEAEERVIEELK  177 (492)
T ss_pred             cCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-----hcCcEEEEEEcCCCccccccccchHHHHHHHHHHH
Confidence            8653221    1                      222222     3788888884 221     0136678899999998


Q ss_pred             hhcCCcccccEEEEEecccC
Q 025189          103 GTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus       103 ~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      +.-     +|+++|+|++|-
T Consensus       178 ~~~-----kPfiivlN~~dp  192 (492)
T TIGR02836       178 ELN-----KPFIILLNSTHP  192 (492)
T ss_pred             hcC-----CCEEEEEECcCC
Confidence            875     999999999994

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.99  E-value=3.9e-09  Score=88.37  Aligned_cols=108  Identities=16%  Similarity=0.185  Sum_probs=62.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEE--e--eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS--R--SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~--~--~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|||||||++.++.... . ..+. .|.......  .  ...+..+.+|||||........       ..+.  ...
T Consensus        15 iG~~g~GKTtLi~~~~~~~~-~-~~~~-~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~-------~~~~--~~~   82 (215)
T PTZ00132         15 VGDGGVGKTTFVKRHLTGEF-E-KKYI-PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR-------DGYY--IKG   82 (215)
T ss_pred             ECCCCCCHHHHHHHHHhCCC-C-CCCC-CccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh-------HHHh--ccC
Confidence            69999999999986554332 1 1111 112122211  1  2234678999999964332111       1111  478


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|++++..........++..+.+.. ++  .++++|.||+|+.
T Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~--~~i~lv~nK~Dl~  126 (215)
T PTZ00132         83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC-EN--IPIVLVGNKVDVK  126 (215)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccCc
Confidence            99999988875322222334555555443 23  6888999999974

>PRK12739 elongation factor G; Reviewed

Probab=98.98  E-value=3.4e-09  Score=103.40  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-----ccccC------------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERV-----VTVNS------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~-----~~~~~------------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|..++|||||+|+|+....     ..+..            ..+.|........++++.+++++||||..+.       
T Consensus        14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f-------   86 (691)
T PRK12739         14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF-------   86 (691)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-------
Confidence            69999999999999975311     01111            1234555556667789999999999998542       


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..++...+  ..+|++++|++... .....+..++..+.+.-     .|.++++||+|+.
T Consensus        87 ~~e~~~al--~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~-----~p~iv~iNK~D~~  138 (691)
T PRK12739         87 TIEVERSL--RVLDGAVAVFDAVS-GVEPQSETVWRQADKYG-----VPRIVFVNKMDRI  138 (691)
T ss_pred             HHHHHHHH--HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence            11222222  47899999977654 35677777777765542     6889999999985

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.4e-08  Score=78.82  Aligned_cols=112  Identities=15%  Similarity=0.162  Sum_probs=79.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|..|+||+-|+..++.. .++.+..............+++|.  ++.||||.|..........|.         +.+|+
T Consensus        13 vgnagvgktclvrrftqg-lfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyy---------rsaha   82 (213)
T KOG0095|consen   13 VGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYY---------RSAHA   82 (213)
T ss_pred             EccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHh---------hhcce
Confidence            699999999999988865 444444333333444555666664  668999999865443333332         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|++++.....+-..+++..|.+.-...  .-.|+|.||.|+.+
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~d  126 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLAD  126 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhh
Confidence            999999987555566678999998886554  34589999999853

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.97  E-value=2.3e-09  Score=95.08  Aligned_cols=79  Identities=20%  Similarity=0.267  Sum_probs=58.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee------------------------CCeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------------------GGFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------------------~g~~v~liDTPG~~~~   56 (256)
                      +|.++||||||+|+|++... .+++++.+|..+......+                        .+.++.+|||||+..+
T Consensus         4 vG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~g   82 (318)
T cd01899           4 VGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPG   82 (318)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCC
Confidence            69999999999999999864 6788888877766543322                        2357899999999654


Q ss_pred             CcCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189           57 GYVN----YQALELIKGFLLNKTIDVLLYADRLD   86 (256)
Q Consensus        57 ~~~~----~~~~~~i~~~l~~~~~d~vL~v~~~d   86 (256)
                      ....    ..++..+      ..+|++++|+++.
T Consensus        83 a~~~~glg~~fL~~i------r~aD~ii~Vvd~~  110 (318)
T cd01899          83 AHEGKGLGNKFLDDL------RDADALIHVVDAS  110 (318)
T ss_pred             ccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence            3222    2344445      4899999998886

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.96  E-value=1.7e-08  Score=94.31  Aligned_cols=109  Identities=17%  Similarity=0.117  Sum_probs=67.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc--------------CC------------------CCCcceeEEEEeeeCCeEEEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN--------------SF------------------QSEALRPVMVSRSKGGFTLNII   48 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~--------------~~------------------~~~t~~~~~~~~~~~g~~v~li   48 (256)
                      +|..++|||||+++|+...-....              ..                  .+.|........+.++.++++|
T Consensus        33 iGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~i  112 (474)
T PRK05124         33 CGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIA  112 (474)
T ss_pred             ECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEE
Confidence            699999999999999865321110              00                  0123334444456678899999


Q ss_pred             eCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           49 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||||..       .+...+...+  ..+|++|+|++.+. .....+.+.+.. ...+|.   +++++++||+|+.
T Consensus       113 DTPGh~-------~f~~~~~~~l--~~aD~allVVDa~~-G~~~qt~~~~~l-~~~lg~---~~iIvvvNKiD~~  173 (474)
T PRK05124        113 DTPGHE-------QYTRNMATGA--STCDLAILLIDARK-GVLDQTRRHSFI-ATLLGI---KHLVVAVNKMDLV  173 (474)
T ss_pred             ECCCcH-------HHHHHHHHHH--hhCCEEEEEEECCC-CccccchHHHHH-HHHhCC---CceEEEEEeeccc
Confidence            999953       2332333222  58999999977664 233333333322 233342   6889999999985

>PRK00007 elongation factor G; Reviewed

Probab=98.96  E-value=6.2e-09  Score=101.61  Aligned_cols=108  Identities=15%  Similarity=0.127  Sum_probs=74.3

Q ss_pred             CCCCCCCHHHHHHHHhC---CCcc--ccc------------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIG---ERVV--TVN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g---~~~~--~~~------------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|..++|||||+|+|+.   ....  .++            ...+.|.........+++..++++||||..+.       
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-------   88 (693)
T PRK00007         16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-------   88 (693)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-------
Confidence            69999999999999974   2110  011            11234555555667788999999999997542       


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..++...+  ..+|++++|++... .....+..++..+.+..     .+.++++||+|+.
T Consensus        89 ~~ev~~al--~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~  140 (693)
T PRK00007         89 TIEVERSL--RVLDGAVAVFDAVG-GVEPQSETVWRQADKYK-----VPRIAFVNKMDRT  140 (693)
T ss_pred             HHHHHHHH--HHcCEEEEEEECCC-CcchhhHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence            11222222  47899999976553 36777777887776653     6889999999985

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.95  E-value=2.6e-09  Score=83.45  Aligned_cols=96  Identities=21%  Similarity=0.273  Sum_probs=59.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      ||++|+|||||+++|.|....    + .-|+.     ..+.+   .+|||||=+-..   ..+...+..  ....+|+|+
T Consensus         7 iG~~g~GKTTL~q~L~~~~~~----~-~KTq~-----i~~~~---~~IDTPGEyiE~---~~~y~aLi~--ta~dad~V~   68 (143)
T PF10662_consen    7 IGPSGSGKTTLAQALNGEEIR----Y-KKTQA-----IEYYD---NTIDTPGEYIEN---PRFYHALIV--TAQDADVVL   68 (143)
T ss_pred             ECCCCCCHHHHHHHHcCCCCC----c-Cccce-----eEecc---cEEECChhheeC---HHHHHHHHH--HHhhCCEEE
Confidence            699999999999999997641    1 12221     22333   369999965432   222222211  225899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|.+.+..+ .    .+--.+.+.|.    +|+|=|+||+|+.
T Consensus        69 ll~dat~~~-~----~~pP~fa~~f~----~pvIGVITK~Dl~  102 (143)
T PF10662_consen   69 LLQDATEPR-S----VFPPGFASMFN----KPVIGVITKIDLP  102 (143)
T ss_pred             EEecCCCCC-c----cCCchhhcccC----CCEEEEEECccCc
Confidence            997766532 0    11112234443    7999999999985

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.94  E-value=4.7e-09  Score=101.52  Aligned_cols=109  Identities=15%  Similarity=0.089  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC----------CC----------------------CCcceeEEEEeeeCCeEEEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS----------FQ----------------------SEALRPVMVSRSKGGFTLNII   48 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~----------~~----------------------~~t~~~~~~~~~~~g~~v~li   48 (256)
                      +|..++|||||+|+|+....+..+.          ..                      +.|........+.++.+++++
T Consensus        30 iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~li  109 (632)
T PRK05506         30 CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVA  109 (632)
T ss_pred             ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEE
Confidence            6999999999999999754322210          11                      123333344556778899999


Q ss_pred             eCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           49 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||||..+       +...+...+  ..+|++|+|++.+. .....+...+..+.. .+.   +++++++||+|+.
T Consensus       110 DtPG~~~-------f~~~~~~~~--~~aD~~llVvda~~-g~~~~t~e~~~~~~~-~~~---~~iivvvNK~D~~  170 (632)
T PRK05506        110 DTPGHEQ-------YTRNMVTGA--STADLAIILVDARK-GVLTQTRRHSFIASL-LGI---RHVVLAVNKMDLV  170 (632)
T ss_pred             ECCChHH-------HHHHHHHHH--HhCCEEEEEEECCC-CccccCHHHHHHHHH-hCC---CeEEEEEEecccc
Confidence            9999632       222222222  58999999977764 233333334433333 232   6889999999985

>TIGR00503 prfC peptide chain release factor 3

Probab=98.93  E-value=7e-09  Score=97.93  Aligned_cols=108  Identities=12%  Similarity=0.162  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC--cccccCCC-------------------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189            1 MGKGGVGKSSTVNSVIGER--VVTVNSFQ-------------------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~--~~~~~~~~-------------------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~   59 (256)
                      +|..|+|||||+++|+...  +...+...                   +.+.........+++..+.+|||||..+..  
T Consensus        17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~--   94 (527)
T TIGR00503        17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFS--   94 (527)
T ss_pred             EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHH--
Confidence            5899999999999986321  11111110                   112223334567789999999999985422  


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       .+....+      ..+|++|+|++... .+......+++.....     ..|+++++||+|+.
T Consensus        95 -~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~  145 (527)
T TIGR00503        95 -EDTYRTL------TAVDNCLMVIDAAK-GVETRTRKLMEVTRLR-----DTPIFTFMNKLDRD  145 (527)
T ss_pred             -HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence             1222223      47999999977664 3555555666544332     27899999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.92  E-value=9.7e-09  Score=94.88  Aligned_cols=110  Identities=14%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc------------------------cc------CCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT------------------------VN------SFQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~------------------------~~------~~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|..++|||||+++|+...-..                        +.      ...+.|..........++..+.+|||
T Consensus        13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDt   92 (426)
T TIGR00483        13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDC   92 (426)
T ss_pred             EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEEC
Confidence            5999999999999998531100                        00      01234555555566777889999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCC--HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD--DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~--~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+       +...+...+  ..+|++++|++++...+.  ......+ .+.+.++.   +++++|+||+|+.
T Consensus        93 pGh~~-------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~~---~~iIVviNK~Dl~  154 (426)
T TIGR00483        93 PGHRD-------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLGI---NQLIVAINKMDSV  154 (426)
T ss_pred             CCHHH-------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcCC---CeEEEEEEChhcc
Confidence            99632       222332222  579999999888764221  1111111 12333442   5899999999985

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.91  E-value=5.9e-09  Score=99.60  Aligned_cols=107  Identities=14%  Similarity=0.073  Sum_probs=63.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEE--ee----------------eCCeEEEEEeCCCCCCCCcCcHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS--RS----------------KGGFTLNIIDTPGLVEAGYVNYQ   62 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~--~~----------------~~g~~v~liDTPG~~~~~~~~~~   62 (256)
                      +|.+|+|||||+|+|.|..++.... ...|.......  ..                +.-..+++|||||..+...    
T Consensus        12 ~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~----   86 (586)
T PRK04004         12 LGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN----   86 (586)
T ss_pred             ECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH----
Confidence            6999999999999999875431111 11111110000  00                0001268999999864321    


Q ss_pred             HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                         ......  ..+|++++|++.++ .+.......+..+...     ..|+++++||+|+.
T Consensus        87 ---~~~~~~--~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~  136 (586)
T PRK04004         87 ---LRKRGG--ALADIAILVVDINE-GFQPQTIEAINILKRR-----KTPFVVAANKIDRI  136 (586)
T ss_pred             ---HHHHhH--hhCCEEEEEEECCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence               111111  47999999988775 3455556666555432     27899999999974

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=98.90  E-value=4.4e-09  Score=84.32  Aligned_cols=113  Identities=13%  Similarity=0.065  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||.|.+...+... ........+.......++++  .+.||||.|...........       .  +++|+
T Consensus        15 LGDsGVGKtSLmn~yv~~kF~~-qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aF-------Y--RgaDc   84 (210)
T KOG0394|consen   15 LGDSGVGKTSLMNQYVNKKFSQ-QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAF-------Y--RGADC   84 (210)
T ss_pred             eCCCCccHHHHHHHHHHHHHHH-HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccce-------e--cCCce
Confidence            5999999999999999875321 11122233334445556665  56799999986543222111       1  69999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHH-HhhcCC-cccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAV-TGTFGK-QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l-~~~~g~-~~~~~~ivv~Tk~D~~  123 (256)
                      +++|++++...-.+.-..+-+++ .+.-.. +-..|+||+.||.|..
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~  131 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD  131 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence            99999999754333333344333 333222 2346899999999984

>cd01882 BMS1 Bms1

Probab=98.89  E-value=1.9e-08  Score=85.17  Aligned_cols=100  Identities=18%  Similarity=0.260  Sum_probs=64.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|+|||||+|+|++... ..++...++   .  ......+..+.++||||..      ...++.+      ..+|++
T Consensus        45 vG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i--~i~~~~~~~i~~vDtPg~~------~~~l~~a------k~aDvV  107 (225)
T cd01882          45 VGPPGVGKTTLIKSLVKNYTKQNISDIKGP---I--TVVTGKKRRLTFIECPNDI------NAMIDIA------KVADLV  107 (225)
T ss_pred             ECCCCCCHHHHHHHHHhhcccCcccccccc---E--EEEecCCceEEEEeCCchH------HHHHHHH------HhcCEE
Confidence            59999999999999998621 111111111   1  1122367889999999742      2333333      478999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~  123 (256)
                      ++|++... .+...+..++..+... |    .+ +++|+||+|+.
T Consensus       108 llviDa~~-~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~  146 (225)
T cd01882         108 LLLIDASF-GFEMETFEFLNILQVH-G----FPRVMGVLTHLDLF  146 (225)
T ss_pred             EEEEecCc-CCCHHHHHHHHHHHHc-C----CCeEEEEEeccccC
Confidence            99976653 3566667777766543 2    45 45699999985

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.89  E-value=1.1e-08  Score=93.84  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--------------cC------------------CCCCcceeEEEEeeeCCeEEEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV--------------NS------------------FQSEALRPVMVSRSKGGFTLNII   48 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~--------------~~------------------~~~~t~~~~~~~~~~~g~~v~li   48 (256)
                      +|..++|||||+++|+...-...              +.                  ..+.|.+......+.++.+++++
T Consensus         6 vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~li   85 (406)
T TIGR02034         6 CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVA   85 (406)
T ss_pred             ECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEE
Confidence            69999999999999985421100              00                  01223444445556788899999


Q ss_pred             eCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           49 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||||..+       +...+...+  ..+|++|+|++.+. .....+.+.+..+. .+|.   +++++++||+|+.
T Consensus        86 DtPGh~~-------f~~~~~~~~--~~aD~allVVda~~-G~~~qt~~~~~~~~-~~~~---~~iivviNK~D~~  146 (406)
T TIGR02034        86 DTPGHEQ-------YTRNMATGA--STADLAVLLVDARK-GVLEQTRRHSYIAS-LLGI---RHVVLAVNKMDLV  146 (406)
T ss_pred             eCCCHHH-------HHHHHHHHH--hhCCEEEEEEECCC-CCccccHHHHHHHH-HcCC---CcEEEEEEecccc
Confidence            9999642       332332222  58999999977764 24344444444333 3332   5789999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.89  E-value=5.8e-10  Score=89.02  Aligned_cols=56  Identities=30%  Similarity=0.472  Sum_probs=32.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF-------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~   59 (256)
                      +|.||||||||+|+|++.....++..       ..+|.....+....+   ..||||||+.+.+..
T Consensus        41 ~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~l~  103 (161)
T PF03193_consen   41 LGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFGLW  103 (161)
T ss_dssp             ECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--GC
T ss_pred             ECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccccc
Confidence            59999999999999999854444332       124444444444233   379999999887544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13351 elongation factor G; Reviewed

Probab=98.88  E-value=9.4e-09  Score=100.36  Aligned_cols=108  Identities=13%  Similarity=0.187  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--ccc---------CC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--TVN---------SF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--~~~---------~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|..|+|||||+++|+.....  ..+         ++      .+.|.........+++..+.+|||||..+..      
T Consensus        14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~------   87 (687)
T PRK13351         14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT------   87 (687)
T ss_pred             ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH------
Confidence            699999999999999853210  001         00      1223333344567789999999999986532      


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       .....++  ..+|++++|++.+. .........++.+... +    .|+++|+||+|+.
T Consensus        88 -~~~~~~l--~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~  138 (687)
T PRK13351         88 -GEVERSL--RVLDGAVVVFDAVT-GVQPQTETVWRQADRY-G----IPRLIFINKMDRV  138 (687)
T ss_pred             -HHHHHHH--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-C----CCEEEEEECCCCC
Confidence             1222222  47899999977765 3445555666555443 1    7899999999985

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.87  E-value=3.2e-09  Score=83.22  Aligned_cols=51  Identities=31%  Similarity=0.487  Sum_probs=39.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV   54 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~   54 (256)
                      +|.+|+||||++|+|++.....++...+.|.......  .++ .+.+|||||+.
T Consensus        89 ~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~i~DtpG~~  139 (141)
T cd01857          89 VGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF--LTP-TITLCDCPGLV  139 (141)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEE--eCC-CEEEEECCCcC
Confidence            5999999999999999988766776666666554433  333 57999999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.86  E-value=1.2e-08  Score=96.30  Aligned_cols=108  Identities=10%  Similarity=0.166  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC--cccccCCC-------------------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189            1 MGKGGVGKSSTVNSVIGER--VVTVNSFQ-------------------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~--~~~~~~~~-------------------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~   59 (256)
                      +|..|+|||||+++|+...  ....+...                   +.+.........+++..+++|||||..+..  
T Consensus        16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~--   93 (526)
T PRK00741         16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFS--   93 (526)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhH--
Confidence            5899999999999997321  11111100                   111222334567889999999999986532  


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       .+....+      ..+|++++|++... ........+++..... +    .|+++++||+|+.
T Consensus        94 -~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-~----iPiiv~iNK~D~~  144 (526)
T PRK00741         94 -EDTYRTL------TAVDSALMVIDAAK-GVEPQTRKLMEVCRLR-D----TPIFTFINKLDRD  144 (526)
T ss_pred             -HHHHHHH------HHCCEEEEEEecCC-CCCHHHHHHHHHHHhc-C----CCEEEEEECCccc
Confidence             1222222      47899999977764 3445555555544332 2    7899999999974

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.86  E-value=1.1e-08  Score=98.10  Aligned_cols=108  Identities=16%  Similarity=0.182  Sum_probs=64.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc-----cCC---------CCCcceeEEEEeee---CC--eEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV-----NSF---------QSEALRPVMVSRSK---GG--FTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~-----~~~---------~~~t~~~~~~~~~~---~g--~~v~liDTPG~~~~~~~~~   61 (256)
                      +|..|+|||||+++|+....+..     ..+         .+.|.........+   ++  ..+++|||||..+..    
T Consensus         9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~----   84 (595)
T TIGR01393         9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS----   84 (595)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH----
Confidence            69999999999999987532111     000         12232222222333   22  678999999997532    


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                         ..+..++  ..+|++++|++++. .....+...+....+   .+  .++++|+||+|+.
T Consensus        85 ---~~v~~~l--~~aD~aILVvDat~-g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~  135 (595)
T TIGR01393        85 ---YEVSRSL--AACEGALLLVDAAQ-GIEAQTLANVYLALE---ND--LEIIPVINKIDLP  135 (595)
T ss_pred             ---HHHHHHH--HhCCEEEEEecCCC-CCCHhHHHHHHHHHH---cC--CCEEEEEECcCCC
Confidence               1222222  47899999977764 233333333332222   12  6899999999984

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.86  E-value=2.5e-08  Score=84.50  Aligned_cols=114  Identities=15%  Similarity=0.078  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee-eCCeEEEEEeCCCCCCCCcC-----cHHHHHHHHHhhhcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYV-----NYQALELIKGFLLNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~v~liDTPG~~~~~~~-----~~~~~~~i~~~l~~~   74 (256)
                      ||+.|+||||..+.+++.-.+.....-+.|.+....... .....+.+||.||..+.-..     .+.+.         .
T Consensus         5 mG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if---------~   75 (232)
T PF04670_consen    5 MGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF---------S   75 (232)
T ss_dssp             EESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH---------C
T ss_pred             EcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH---------h
Confidence            699999999999999987543322222334444444444 35569999999999864321     12222         6


Q ss_pred             CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++++||+++......++-..+.+.+....-.+-..++-+.+.|+|+.
T Consensus        76 ~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l  124 (232)
T PF04670_consen   76 NVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL  124 (232)
T ss_dssp             TESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred             ccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence            8999999987774344444344444444332212225788888999985

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK12740 elongation factor G; Reviewed

Probab=98.85  E-value=1.5e-08  Score=98.77  Aligned_cols=108  Identities=14%  Similarity=0.223  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--cCC---------------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV--NSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~--~~~---------------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|..|+|||||+|+|+....+..  +..               .+.|.........+++..+++|||||..+..   ...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~---~~~   77 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT---GEV   77 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH---HHH
Confidence            69999999999999965432111  100               1223333445667889999999999986421   122


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...+      ..+|++++|++.+. .........+..+... +    .++++|+||+|..
T Consensus        78 ~~~l------~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~  125 (668)
T PRK12740         78 ERAL------RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-G----VPRIIFVNKMDRA  125 (668)
T ss_pred             HHHH------HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-C----CCEEEEEECCCCC
Confidence            2222      47999999977765 3455555566555443 2    7899999999985

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.85  E-value=7.4e-09  Score=90.79  Aligned_cols=60  Identities=22%  Similarity=0.387  Sum_probs=48.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|.+||||||++|+|+|...+.+++.+++|...+....   +..+.++||||+..+...+.+.
T Consensus       127 ~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~~~~~  186 (287)
T PRK09563        127 IGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWPKLEDQEV  186 (287)
T ss_pred             ECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCCCCCcHHH
Confidence            69999999999999999988888888888877654332   3457899999999877665543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.82  E-value=5.2e-09  Score=93.91  Aligned_cols=55  Identities=33%  Similarity=0.597  Sum_probs=40.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAGY   58 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~~~   58 (256)
                      +|.||||||||||+|+++....++..+.       ||.....+....++   .|+||||+.+.+.
T Consensus       211 vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~l  272 (347)
T PRK12288        211 VGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFGL  272 (347)
T ss_pred             ECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcccC
Confidence            6999999999999999987666665432       44444444443344   5999999987654

>PRK12289 GTPase RsgA; Reviewed

Probab=98.82  E-value=4.2e-09  Score=94.61  Aligned_cols=55  Identities=29%  Similarity=0.469  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAGY   58 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~~~   58 (256)
                      +|.||||||||||+|++.....++..++       +|+....+...-+|   .|+||||+.....
T Consensus       178 iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l  239 (352)
T PRK12289        178 AGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL  239 (352)
T ss_pred             EeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence            6999999999999999987666666554       56666555443333   6999999987543

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.82  E-value=1.8e-08  Score=92.01  Aligned_cols=79  Identities=23%  Similarity=0.294  Sum_probs=57.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee------------------------eCCeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS------------------------KGGFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~------------------------~~g~~v~liDTPG~~~~   56 (256)
                      +|.+|||||||+|+|++... .+++++.+|..+......                        ....++.++||||+..+
T Consensus         7 vG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~g   85 (396)
T PRK09602          7 VGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPG   85 (396)
T ss_pred             ECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCC
Confidence            69999999999999999864 567787787766654322                        12256889999999765


Q ss_pred             CcC----cHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189           57 GYV----NYQALELIKGFLLNKTIDVLLYADRLD   86 (256)
Q Consensus        57 ~~~----~~~~~~~i~~~l~~~~~d~vL~v~~~d   86 (256)
                      ...    ...++..+      ..+|++++|++..
T Consensus        86 a~~g~glg~~fL~~i------r~ad~ll~Vvd~~  113 (396)
T PRK09602         86 AHEGRGLGNQFLDDL------RQADALIHVVDAS  113 (396)
T ss_pred             ccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence            322    22455555      4899999998875

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.80  E-value=1.6e-07  Score=79.44  Aligned_cols=95  Identities=19%  Similarity=0.102  Sum_probs=60.5

Q ss_pred             CCCCCCCHHHHHHHHhCC-CcccccC-CCCCcceeEEEEeee---CCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhh
Q 025189            1 MGKGGVGKSSTVNSVIGE-RVVTVNS-FQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVN---YQALELIKGFLL   72 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~-~~~~~~~-~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~   72 (256)
                      +|++++|||+|+|.|+|. ..+.++. ..+||..........   .+..+.++||||+.+.....   +..+..+..   
T Consensus        13 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~---   89 (224)
T cd01851          13 FGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALAT---   89 (224)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHH---
Confidence            699999999999999998 2444443 467777666555444   36789999999999875433   112222211   


Q ss_pred             cCCCcEEEEEEeCCCCCCCHHHHHHHHHHH
Q 025189           73 NKTIDVLLYADRLDAYRVDDLDRQIIKAVT  102 (256)
Q Consensus        73 ~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~  102 (256)
                       --.++++|....   .....+...+..+.
T Consensus        90 -llss~~i~n~~~---~~~~~~~~~l~~~~  115 (224)
T cd01851          90 -LLSSVLIYNSWE---TILGDDLAALMGLL  115 (224)
T ss_pred             -HHhCEEEEeccC---cccHHHHHHHHHHH
Confidence             136888888333   33444444444443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.80  E-value=1.2e-08  Score=88.89  Aligned_cols=58  Identities=24%  Similarity=0.391  Sum_probs=46.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~   61 (256)
                      +|.+||||||++|+|.+...+.++..+++|...+....   +..+.++||||+..+...+.
T Consensus       124 vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~~  181 (276)
T TIGR03596       124 VGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFEDQ  181 (276)
T ss_pred             ECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCch
Confidence            69999999999999999988788888888877654333   23579999999977765544

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.78  E-value=6.1e-09  Score=90.47  Aligned_cols=55  Identities=31%  Similarity=0.524  Sum_probs=39.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF-------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY   58 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~   58 (256)
                      +|.||||||||+|+|.++....+++.       ..||+....+....+|   .|+|||||.+.+.
T Consensus       170 ~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l  231 (301)
T COG1162         170 LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL  231 (301)
T ss_pred             ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence            59999999999999999654444332       2355556666655566   5999999987654

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.76  E-value=3.7e-08  Score=94.49  Aligned_cols=108  Identities=18%  Similarity=0.151  Sum_probs=64.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc-----c---C------CCCCcceeEEEEeee-----CCeEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV-----N---S------FQSEALRPVMVSRSK-----GGFTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~-----~---~------~~~~t~~~~~~~~~~-----~g~~v~liDTPG~~~~~~~~~   61 (256)
                      +|..++|||||+++|+...-...     .   +      ..+.|.........+     .+..+++|||||..+..    
T Consensus        13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~----   88 (600)
T PRK05433         13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS----   88 (600)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH----
Confidence            58999999999999986421100     0   0      012222222222333     25688999999997642    


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                         ..+.+.+  ..+|++|+|++.+. .....+...+.....   .+  .++++|+||+|+.
T Consensus        89 ---~~v~~sl--~~aD~aILVVDas~-gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~  139 (600)
T PRK05433         89 ---YEVSRSL--AACEGALLVVDASQ-GVEAQTLANVYLALE---ND--LEIIPVLNKIDLP  139 (600)
T ss_pred             ---HHHHHHH--HHCCEEEEEEECCC-CCCHHHHHHHHHHHH---CC--CCEEEEEECCCCC
Confidence               1222222  47899999977764 234444433333322   12  6899999999984

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.76  E-value=9.7e-09  Score=88.02  Aligned_cols=54  Identities=35%  Similarity=0.479  Sum_probs=38.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGY   58 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~   58 (256)
                      +|.+|||||||+|+|++.....++...       .||.....+.. .+|   .|+||||+...+.
T Consensus       126 ~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~liDtPG~~~~~l  186 (245)
T TIGR00157       126 AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGG---LIADTPGFNEFGL  186 (245)
T ss_pred             ECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCc---EEEeCCCccccCC
Confidence            699999999999999997654444332       25655555554 233   7999999987653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=98.74  E-value=1.4e-08  Score=79.55  Aligned_cols=115  Identities=15%  Similarity=0.099  Sum_probs=77.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEe--eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR--SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|..-||||||+-....... .-.....-....+....  +....++.||||.|..........|.         ++.+.
T Consensus        19 LGEGCVGKtSLVLRy~EnkF-n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY---------RgSnG   88 (218)
T KOG0088|consen   19 LGEGCVGKTSLVLRYVENKF-NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY---------RGSNG   88 (218)
T ss_pred             EcCCccchhHHHHHHHHhhc-chhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE---------eCCCc
Confidence            57888999999977775432 11111000000111112  22345789999999876544443333         58899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG  127 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~  127 (256)
                      .|+|+++.+....+..+.++..|+.+.|.+  .-.++|.||.|+.+.+.
T Consensus        89 alLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~  135 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQ  135 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhh
Confidence            999999998556677789999999999988  67899999999853333

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=6.9e-08  Score=74.82  Aligned_cols=111  Identities=15%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-CcceeEEEE--eeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVS--RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~--~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      ||.+.+||+|++-+.++...  .+.+-+ ...+.....  ..-...++.+|||.|..........+   +      ++++
T Consensus        27 iGnssvGKTSfl~ry~ddSF--t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTay---y------Rgam   95 (193)
T KOG0093|consen   27 IGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAY---Y------RGAM   95 (193)
T ss_pred             EccCCccchhhhHHhhcccc--ccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHH---h------hccc
Confidence            69999999999999998753  122211 111111111  11234688999999986532221111   1      6999


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +|++++++.........+.+.-.|....-.+  .++|+|.||||+..
T Consensus        96 gfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~  140 (193)
T KOG0093|consen   96 GFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDS  140 (193)
T ss_pred             eEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCcc
Confidence            9999988876443344455555554443233  67999999999853

>PTZ00416 elongation factor 2; Provisional

Probab=98.73  E-value=1e-07  Score=94.78  Aligned_cols=108  Identities=16%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC---------------CCcceeEEEEeeeC----------CeEEEEEeCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ---------------SEALRPVMVSRSKG----------GFTLNIIDTPGLVE   55 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~~----------g~~v~liDTPG~~~   55 (256)
                      +|..++|||||+++|++..........               +.|.........+.          +..++++||||..+
T Consensus        25 iGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~  104 (836)
T PTZ00416         25 IAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVD  104 (836)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHh
Confidence            589999999999999975321111001               11111111122332          66799999999965


Q ss_pred             CCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           56 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                             +...+...+  ..+|++++|++... .+...+..+++.+.+.-     .|.++++||+|+.
T Consensus       105 -------f~~~~~~al--~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~-----~p~iv~iNK~D~~  157 (836)
T PTZ00416        105 -------FSSEVTAAL--RVTDGALVVVDCVE-GVCVQTETVLRQALQER-----IRPVLFINKVDRA  157 (836)
T ss_pred             -------HHHHHHHHH--hcCCeEEEEEECCC-CcCccHHHHHHHHHHcC-----CCEEEEEEChhhh
Confidence                   222233333  58999999977664 36666777777666542     6899999999974

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.73  E-value=1e-07  Score=88.56  Aligned_cols=109  Identities=17%  Similarity=0.144  Sum_probs=67.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCc--cc----------------------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERV--VT----------------------VNS------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~--~~----------------------~~~------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|..++|||||+.+|+...-  ..                      +.+      ..+.|........++++..++++||
T Consensus        13 ~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDt   92 (446)
T PTZ00141         13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDA   92 (446)
T ss_pred             EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEEC
Confidence            58899999999998875210  00                      000      1123444445556778899999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC------CHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      ||..       ++...+...+  ..+|++++|++.+..-+      .....+.+..+.. .|-   +++|+++||+|.
T Consensus        93 PGh~-------~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~iiv~vNKmD~  157 (446)
T PTZ00141         93 PGHR-------DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQMIVCINKMDD  157 (446)
T ss_pred             CChH-------HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---CeEEEEEEcccc
Confidence            9964       2333333332  58999999977664222      1334444444333 342   468899999995

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.73  E-value=2.7e-08  Score=81.00  Aligned_cols=111  Identities=14%  Similarity=0.222  Sum_probs=61.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee---CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|++|+|||+|...|.....  .....+.  ++.. ...+   .+..+.+||+||...-.   ...++.+.   ..+.+.
T Consensus         9 ~Gps~SGKTaLf~~L~~~~~--~~T~tS~--e~n~-~~~~~~~~~~~~~lvD~PGH~rlr---~~~~~~~~---~~~~~k   77 (181)
T PF09439_consen    9 VGPSGSGKTALFSQLVNGKT--VPTVTSM--ENNI-AYNVNNSKGKKLRLVDIPGHPRLR---SKLLDELK---YLSNAK   77 (181)
T ss_dssp             E-STTSSHHHHHHHHHHSS-----B---S--SEEE-ECCGSSTCGTCECEEEETT-HCCC---HHHHHHHH---HHGGEE
T ss_pred             EcCCCCCHHHHHHHHhcCCc--CCeeccc--cCCc-eEEeecCCCCEEEEEECCCcHHHH---HHHHHhhh---chhhCC
Confidence            59999999999999998742  1111111  2222 2223   56688999999986432   33443322   125789


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcC----CcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFG----KQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g----~~~~~~~ivv~Tk~D~~~  124 (256)
                      +|+||++..  .+..+-....+.|-.++-    ..-..|++|+.||.|+..
T Consensus        78 ~IIfvvDSs--~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   78 GIIFVVDSS--TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEEETT--THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEEeCc--cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999995433  333333444444433321    122478999999999864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.71  E-value=8.8e-08  Score=75.50  Aligned_cols=107  Identities=19%  Similarity=0.189  Sum_probs=73.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|..|+||||+++.+.|+....++    .|...+....++++.++++||.-|.-..    ..+.+++-     ...|+++
T Consensus        22 LGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~~l----r~~W~nYf-----estdglI   88 (185)
T KOG0073|consen   22 LGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQKTL----RSYWKNYF-----ESTDGLI   88 (185)
T ss_pred             EecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcchh----HHHHHHhh-----hccCeEE
Confidence            589999999999999998743222    3455677788999999999999997532    23443332     4789999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~  123 (256)
                      ||++..+.+.-++..   ..|++.+.++  +-.+++++.||.|+.
T Consensus        89 wvvDssD~~r~~e~~---~~L~~lL~eerlaG~~~Lvlank~dl~  130 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECK---QELTELLVEERLAGAPLLVLANKQDLP  130 (185)
T ss_pred             EEEECchHHHHHHHH---HHHHHHHhhhhhcCCceEEEEecCcCc
Confidence            997776533222323   3333333321  236899999999984

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.70  E-value=2.2e-08  Score=89.06  Aligned_cols=57  Identities=21%  Similarity=0.441  Sum_probs=47.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN   60 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~   60 (256)
                      ||-++|||||+||+|.|...+.++..+++|...+......   .+.++||||+.-....+
T Consensus       138 vG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~~~~~  194 (322)
T COG1161         138 VGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPPKFDD  194 (322)
T ss_pred             EcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcCCCCccc
Confidence            6999999999999999999999999998888766544332   26899999998876655

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.67  E-value=3.7e-08  Score=89.03  Aligned_cols=81  Identities=23%  Similarity=0.318  Sum_probs=51.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC-----cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcC
Q 025189            1 MGKGGVGKSSTVNSVIGER-----VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~   74 (256)
                      +|.||||||||+|+|++..     .+.++..+++|.......  . +..+.++||||+......... ..+.++......
T Consensus       160 vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~  236 (360)
T TIGR03597       160 VGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKK  236 (360)
T ss_pred             ECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCC
Confidence            6999999999999999853     356777788887665443  3 223579999999875321110 011222222334


Q ss_pred             CCcEEEEEEe
Q 025189           75 TIDVLLYADR   84 (256)
Q Consensus        75 ~~d~vL~v~~   84 (256)
                      ++..+.|+++
T Consensus       237 ~i~~~~~~l~  246 (360)
T TIGR03597       237 EIKPKTYQLN  246 (360)
T ss_pred             ccCceEEEeC
Confidence            6777777743

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.65  E-value=7.1e-08  Score=94.57  Aligned_cols=108  Identities=14%  Similarity=0.220  Sum_probs=66.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc---------cccCC------CCCcceeE----EEEeeeCCeEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV---------TVNSF------QSEALRPV----MVSRSKGGFTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~---------~~~~~------~~~t~~~~----~~~~~~~g~~v~liDTPG~~~~~~~~~   61 (256)
                      +|..|+|||||+++|+...-+         ...++      .+.|....    ......++..+++|||||..+..   .
T Consensus        25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~---~  101 (720)
T TIGR00490        25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFG---G  101 (720)
T ss_pred             EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccH---H
Confidence            588999999999999753110         00011      11122211    12245667899999999997643   2


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .....+      ..+|++|+|++... .....+..+++.+.+.   +  .+.++++||+|..
T Consensus       102 ~~~~al------~~aD~~llVvda~~-g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~  151 (720)
T TIGR00490       102 DVTRAM------RAVDGAIVVVCAVE-GVMPQTETVLRQALKE---N--VKPVLFINKVDRL  151 (720)
T ss_pred             HHHHHH------HhcCEEEEEEecCC-CCCccHHHHHHHHHHc---C--CCEEEEEEChhcc
Confidence            222233      48999999977654 2444555555544332   1  5778999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.64  E-value=2.1e-07  Score=86.39  Aligned_cols=121  Identities=20%  Similarity=0.257  Sum_probs=81.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEE-EEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM-VSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~-~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.-||||||||-+|+.++.  +.+.+..-..... ....-...+.+++||+.-.+   ......++++      .+|++
T Consensus        15 iGD~G~GKtSLImSL~~eef--~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~---~~~~l~~Eir------kA~vi   83 (625)
T KOG1707|consen   15 IGDEGVGKTSLIMSLLEEEF--VDAVPRRLPRILIPADVTPENVPTSIVDTSSDSD---DRLCLRKEIR------KADVI   83 (625)
T ss_pred             ECCCCccHHHHHHHHHhhhc--cccccccCCccccCCccCcCcCceEEEecccccc---hhHHHHHHHh------hcCEE
Confidence            69999999999999999863  2222211111100 11222355679999984322   1233455664      89999


Q ss_pred             EEEEeCCC-CCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189           80 LYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV  132 (256)
Q Consensus        80 L~v~~~d~-~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~  132 (256)
                      .+|+.+|+ ..++.....++-.+.+.+|+....|+|+|.||+|.......+.+.
T Consensus        84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~  137 (625)
T KOG1707|consen   84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV  137 (625)
T ss_pred             EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence            99998887 336667788999999999988889999999999985433333333

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.63  E-value=2.4e-07  Score=85.17  Aligned_cols=69  Identities=13%  Similarity=0.136  Sum_probs=43.6

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      ++.+++|||||..       ++...+....  ..+|++++|++.+..-......+.+..+ +.++-   +++++|+||+|
T Consensus        79 ~~~i~liDtPGh~-------~f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~D  145 (406)
T TIGR03680        79 LRRVSFVDAPGHE-------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKID  145 (406)
T ss_pred             ccEEEEEECCCHH-------HHHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccc
Confidence            5689999999964       2333332222  3689999998777421133444444433 33332   57899999999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      +.
T Consensus       146 l~  147 (406)
T TIGR03680       146 LV  147 (406)
T ss_pred             cC
Confidence            85

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.62  E-value=3.1e-07  Score=84.51  Aligned_cols=68  Identities=12%  Similarity=0.143  Sum_probs=42.0

Q ss_pred             eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      ..+++|||||..       .+...+...  ...+|++++|++.+..-........+..+.. .+-   +++++|+||+|+
T Consensus        85 ~~i~liDtPG~~-------~f~~~~~~~--~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl  151 (411)
T PRK04000         85 RRVSFVDAPGHE-------TLMATMLSG--AALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL  151 (411)
T ss_pred             cEEEEEECCCHH-------HHHHHHHHH--HhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence            578999999953       222222211  1468999999777642113444445554432 231   578999999998


Q ss_pred             C
Q 025189          123 C  123 (256)
Q Consensus       123 ~  123 (256)
                      .
T Consensus       152 ~  152 (411)
T PRK04000        152 V  152 (411)
T ss_pred             c
Confidence            5

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=98.59  E-value=4.9e-08  Score=80.12  Aligned_cols=109  Identities=19%  Similarity=0.219  Sum_probs=75.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-Ce--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      ||..++|||+++.+..... + ...+.++..+.......++ |.  .+.+|||.|..+.+...         -++=+..|
T Consensus        10 VGDga~GKT~ll~~~t~~~-f-p~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlR---------plsY~~td   78 (198)
T KOG0393|consen   10 VGDGAVGKTCLLISYTTNA-F-PEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLR---------PLSYPQTD   78 (198)
T ss_pred             ECCCCcCceEEEEEeccCc-C-cccccCeEEccceEEEEecCCCEEEEeeeecCCCccccccc---------ccCCCCCC
Confidence            6999999999987776552 2 2223233333344455664 65  45799999998774321         11237899


Q ss_pred             EEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +||+|+++++.. +...-..++.+++...+.   .|+|+|.||.|+.
T Consensus        79 vfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr  122 (198)
T KOG0393|consen   79 VFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR  122 (198)
T ss_pred             EEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence            999999998633 444456788888888755   7999999999985

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.58  E-value=7.4e-07  Score=69.61  Aligned_cols=117  Identities=12%  Similarity=0.092  Sum_probs=71.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee---CCeEEEEEeCCCCCCCC-cCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAG-YVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~-~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.-++|||+++..|+-.+.........+..+......+-   ....+.++||.|+.++. .....       |+  .-+
T Consensus        15 cG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprh-------y~--q~a   85 (198)
T KOG3883|consen   15 CGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRH-------YF--QFA   85 (198)
T ss_pred             ECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHh-------Hh--ccC
Confidence            4778999999998877555434445555555555444432   23478999999998762 11222       22  468


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG  127 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~  127 (256)
                      |+|++|++.++.+..+-...+-+.|.+ +.+.--.+++++.|++|+.++..
T Consensus        86 DafVLVYs~~d~eSf~rv~llKk~Idk-~KdKKEvpiVVLaN~rdr~~p~~  135 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVELLKKEIDK-HKDKKEVPIVVLANKRDRAEPRE  135 (198)
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHhh-ccccccccEEEEechhhcccchh
Confidence            999999887764321221222233333 23333468999999999865443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=1e-07  Score=81.39  Aligned_cols=117  Identities=20%  Similarity=0.275  Sum_probs=75.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc-C--CCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcH------H-------
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN-S--FQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNY------Q-------   62 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~-~--~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~------~-------   62 (256)
                      ||.||.|||||+++|++...-... .  .+........+...-.+  .+++|+||.|+||--..++      +       
T Consensus        48 vGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFE  127 (406)
T KOG3859|consen   48 VGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFE  127 (406)
T ss_pred             eccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHH
Confidence            699999999999999997542111 0  11111122222222223  3679999999998421111      1       


Q ss_pred             -HHH---HHHHhh---hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           63 -ALE---LIKGFL---LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        63 -~~~---~i~~~l---~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       |++   .|++.+   -+.++|++||.+...+..+...|.-.++.|.+.      .++|-|+.|+|-.
T Consensus       128 aYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDti  189 (406)
T KOG3859|consen  128 AYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTI  189 (406)
T ss_pred             HHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhh
Confidence             111   122222   246899999998888877888888888888776      6888899999864

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=98.56  E-value=1.1e-07  Score=75.07  Aligned_cols=122  Identities=13%  Similarity=0.029  Sum_probs=77.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee---eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      ||.+-||||||+..++....+..++. ....+......+   ....++.+|||.|........+.|.         +..-
T Consensus        14 igdstvgkssll~~ft~gkfaelsdp-tvgvdffarlie~~pg~riklqlwdtagqerfrsitksyy---------rnsv   83 (213)
T KOG0091|consen   14 IGDSTVGKSSLLRYFTEGKFAELSDP-TVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYY---------RNSV   83 (213)
T ss_pred             EcCCcccHHHHHHHHhcCcccccCCC-ccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHh---------hccc
Confidence            69999999999999998876655531 111111100111   1235778999999865443333332         3556


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV  132 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~  132 (256)
                      .+|+|++++..+..+....+++.-+...+.....-+.+|.+|+|+...+..+.++
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE  138 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE  138 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH
Confidence            7888999988666677777777776666633334467788999986555555544

>PRK00098 GTPase RsgA; Reviewed

Probab=98.55  E-value=1.7e-07  Score=82.67  Aligned_cols=53  Identities=26%  Similarity=0.449  Sum_probs=36.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~   56 (256)
                      +|.+|||||||+|+|+|.....++....       +|+....+.....+   .++||||+...
T Consensus       170 ~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~~  229 (298)
T PRK00098        170 AGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSSF  229 (298)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCcc
Confidence            6999999999999999986555444322       44444433332222   79999999864

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.55  E-value=1.3e-07  Score=73.24  Aligned_cols=107  Identities=14%  Similarity=0.095  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|-.++||||++|.++....   +..-..|.....+..+-+.+.+.+||.||.......-+.|-         ++.++++
T Consensus        26 vGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWeryc---------R~v~aiv   93 (186)
T KOG0075|consen   26 VGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYC---------RGVSAIV   93 (186)
T ss_pred             EeeccCCcceEEEEEeeccc---hhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHh---------hcCcEEE
Confidence            57889999999999886432   11122344455666677788999999999865432222221         6999999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcc--cccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQI--WRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~--~~~~ivv~Tk~D~~  123 (256)
                      ||++..+.. .+.    .-.+|...+.++.  -.|++|+.||.|+.
T Consensus        94 Y~VDaad~~k~~~----sr~EL~~LL~k~~l~gip~LVLGnK~d~~  135 (186)
T KOG0075|consen   94 YVVDAADPDKLEA----SRSELHDLLDKPSLTGIPLLVLGNKIDLP  135 (186)
T ss_pred             EEeecCCcccchh----hHHHHHHHhcchhhcCCcEEEecccccCc
Confidence            996655422 222    2223333333322  36899999999983

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.53  E-value=4.7e-07  Score=77.40  Aligned_cols=114  Identities=22%  Similarity=0.279  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc---CcHHHHHHHHHhhhc--C
Q 025189            1 MGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLN--K   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~---~~~~~~~~i~~~l~~--~   74 (256)
                      +|.|++|||||+|.++.... +..+.  +.+..++......-|..+.++|.||++..+.   ...+.-+..+.++..  .
T Consensus       142 ~g~SNVGKSSLln~~~r~k~~~~t~k--~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~n  219 (320)
T KOG2486|consen  142 YGRSNVGKSSLLNDLVRVKNIADTSK--SKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLEREN  219 (320)
T ss_pred             ecCCcccHHHHHhhhhhhhhhhhhcC--CCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhh
Confidence            48999999999999998653 22222  1222233333333466789999999665432   222333334444432  2


Q ss_pred             CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      -..+||++.. + ..+...|...++.+-+.-     .|+.+|+||||..
T Consensus       220 Lv~~FLLvd~-s-v~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~  261 (320)
T KOG2486|consen  220 LVRVFLLVDA-S-VPIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQ  261 (320)
T ss_pred             hheeeeeeec-c-CCCCCCChHHHHHHhhcC-----CCeEEeeehhhhh
Confidence            3566677622 2 135555555555554442     7999999999973

>PRK13796 GTPase YqeH; Provisional

Probab=98.53  E-value=9.4e-08  Score=86.56  Aligned_cols=53  Identities=32%  Similarity=0.576  Sum_probs=39.4

Q ss_pred             CCCCCCCHHHHHHHHhCC-----CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~   56 (256)
                      ||.+|||||||||+|++.     +...++..+++|......... +|  ..++||||+...
T Consensus       166 vG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-~~--~~l~DTPGi~~~  223 (365)
T PRK13796        166 VGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-DG--SFLYDTPGIIHR  223 (365)
T ss_pred             EcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-CC--cEEEECCCcccc
Confidence            699999999999999964     234567788888876554332 23  379999999643

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.52  E-value=2.2e-07  Score=81.47  Aligned_cols=54  Identities=30%  Similarity=0.548  Sum_probs=36.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAG   57 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~   57 (256)
                      +|.+|+|||||+|+|+|.....++...       .+|.....+.....+   .++||||+.+..
T Consensus       167 ~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~  227 (287)
T cd01854         167 VGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG  227 (287)
T ss_pred             ECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence            699999999999999997654444322       244444443333233   699999997643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.51  E-value=7.9e-07  Score=88.65  Aligned_cols=108  Identities=17%  Similarity=0.249  Sum_probs=66.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC---------------CCcceeEEEEeee----------------CCeEEEEEe
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ---------------SEALRPVMVSRSK----------------GGFTLNIID   49 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~----------------~g~~v~liD   49 (256)
                      +|..++|||||+++|+...........               +.|-.+......+                .+..++++|
T Consensus        25 iGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD  104 (843)
T PLN00116         25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLID  104 (843)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEEC
Confidence            589999999999999865321111000               1111211112222                267789999


Q ss_pred             CCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           50 TPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |||..|.       ..++...+  ..+|..++|++... .+......+++.+...-     .++++++||+|..
T Consensus       105 tPGh~dF-------~~e~~~al--~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~-----~p~i~~iNK~D~~  163 (843)
T PLN00116        105 SPGHVDF-------SSEVTAAL--RITDGALVVVDCIE-GVCVQTETVLRQALGER-----IRPVLTVNKMDRC  163 (843)
T ss_pred             CCCHHHH-------HHHHHHHH--hhcCEEEEEEECCC-CCcccHHHHHHHHHHCC-----CCEEEEEECCccc
Confidence            9998542       22333222  57899999977654 34455555665554432     7899999999975

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.49  E-value=1.4e-06  Score=80.02  Aligned_cols=71  Identities=14%  Similarity=0.140  Sum_probs=46.8

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +..+.||||||...   .+...++++........+|.+++|++..   .........+.+.+..     ...-+|+||.|
T Consensus       182 ~~DvViIDTaGr~~---~d~~lm~El~~i~~~~~p~e~lLVlda~---~Gq~a~~~a~~F~~~~-----~~~g~IlTKlD  250 (429)
T TIGR01425       182 NFDIIIVDTSGRHK---QEDSLFEEMLQVAEAIQPDNIIFVMDGS---IGQAAEAQAKAFKDSV-----DVGSVIITKLD  250 (429)
T ss_pred             CCCEEEEECCCCCc---chHHHHHHHHHHhhhcCCcEEEEEeccc---cChhHHHHHHHHHhcc-----CCcEEEEECcc
Confidence            56889999999743   3445556666554445789999994432   2333444555555543     46789999999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      ..
T Consensus       251 ~~  252 (429)
T TIGR01425       251 GH  252 (429)
T ss_pred             CC
Confidence            74

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.48  E-value=6.5e-07  Score=88.07  Aligned_cols=108  Identities=16%  Similarity=0.233  Sum_probs=65.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc---------cCC------CCCcceeEEEEeee----CCeEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV---------NSF------QSEALRPVMVSRSK----GGFTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~---------~~~------~~~t~~~~~~~~~~----~g~~v~liDTPG~~~~~~~~~   61 (256)
                      +|..++|||||+.+|+...-...         .++      .+.|..+......+    .+..++++||||..+..   .
T Consensus        26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~---~  102 (731)
T PRK07560         26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG---G  102 (731)
T ss_pred             EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH---H
Confidence            58899999999999986432111         000      01122222112222    46789999999997632   2


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                          .+...+  ..+|++++|++... ........+++...+. +    .+.++++||+|..
T Consensus       103 ----~~~~~l--~~~D~avlVvda~~-g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~  152 (731)
T PRK07560        103 ----DVTRAM--RAVDGAIVVVDAVE-GVMPQTETVLRQALRE-R----VKPVLFINKVDRL  152 (731)
T ss_pred             ----HHHHHH--HhcCEEEEEEECCC-CCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence                222222  47899999977654 3555566666654333 2    4679999999974

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.47  E-value=3.3e-06  Score=78.50  Aligned_cols=110  Identities=14%  Similarity=0.083  Sum_probs=67.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--------------c----------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--------------T----------VNS------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--------------~----------~~~------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|..++|||||+-+|+...-.              .          +.+      ..+.|........+.+++.++++||
T Consensus        13 ~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDt   92 (447)
T PLN00043         13 IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDA   92 (447)
T ss_pred             EecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEEC
Confidence            588999999999888732100              0          000      1123444445556778899999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCC------HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD------DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~------~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..       ++...+...+  ..+|+.++|++.+...+.      ....+.+.. ....|-   +++++++||+|+.
T Consensus        93 PGh~-------df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~-~~~~gi---~~iIV~vNKmD~~  158 (447)
T PLN00043         93 PGHR-------DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALL-AFTLGV---KQMICCCNKMDAT  158 (447)
T ss_pred             CCHH-------HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHH-HHHcCC---CcEEEEEEcccCC
Confidence            9964       3444444333  589999999877653232      222222222 222332   4789999999974

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=5e-07  Score=70.52  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEE--EEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM--VSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~--~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|+|||-|+..+..... .-.  .+.|.....  ....++|  +++.||||.|.......       .+.+.  +++
T Consensus        15 iG~aGtGKSCLLh~Fie~kf-kDd--ssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV-------tRsYY--RGA   82 (214)
T KOG0086|consen   15 IGSAGTGKSCLLHQFIENKF-KDD--SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV-------TRSYY--RGA   82 (214)
T ss_pred             eccCCCChhHHHHHHHHhhh-ccc--ccceeeeeecceeeeecCcEEEEEEeecccHHHHHHH-------HHHHh--ccc
Confidence            59999999999988886542 111  112222211  2233444  46789999998543322       22222  588


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCc
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN  129 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~  129 (256)
                      -..|+|+++......++...++...+.+-..+  .-++++.||.|+.+.++.+
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~Vt  133 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVT  133 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhh
Confidence            88899988886434455556666665554433  3456667888986444443

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.46  E-value=1.3e-06  Score=70.26  Aligned_cols=108  Identities=16%  Similarity=0.188  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc----C--C---CCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN----S--F---QSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGF   70 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~----~--~---~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~~~~~i~~~   70 (256)
                      .|..|+||||++.++.......+.    .  .   .++|...-....++++ ..+.++||||.....+.-+    .+.  
T Consensus        16 ~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~----~l~--   89 (187)
T COG2229          16 IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE----ILS--   89 (187)
T ss_pred             EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH----HHh--
Confidence            488999999999999987532221    1  1   1233333344455555 8899999999864432221    111  


Q ss_pred             hhcCCCcEEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           71 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        71 l~~~~~d~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                         ++....+++  +|+.+ .+..+..+++.+.....    .|++|..||.|+.
T Consensus        90 ---~ga~gaivl--VDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~  134 (187)
T COG2229          90 ---RGAVGAIVL--VDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLF  134 (187)
T ss_pred             ---CCcceEEEE--EecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccC
Confidence               567777666  34434 34466777777766543    6899999999995

>TIGR00092 GTP-binding protein YchF

Probab=98.46  E-value=7e-07  Score=80.32  Aligned_cols=80  Identities=20%  Similarity=0.180  Sum_probs=62.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCc----C
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGY----V   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~----~   59 (256)
                      +|.+++|||||+|+|++...+.++.++.||..+......+.+                 ..+.++|.||+..+..    .
T Consensus         8 vGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Gl   87 (368)
T TIGR00092         8 VGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGL   87 (368)
T ss_pred             ECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCc
Confidence            699999999999999999865677888888877766555543                 3578999999987543    3


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLD   86 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d   86 (256)
                      ....+..++      .+|++++|++..
T Consensus        88 gn~fL~~ir------~~d~l~hVvr~f  108 (368)
T TIGR00092        88 GNQFLANIR------EVDIIQHVVRCF  108 (368)
T ss_pred             chHHHHHHH------hCCEEEEEEeCC
Confidence            346777775      789999998874

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=9.9e-07  Score=83.36  Aligned_cols=68  Identities=13%  Similarity=0.122  Sum_probs=48.3

Q ss_pred             EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+.++|.||++-+...+..+.   +.|   -.+|+|+||..... .++..+++++....+.     .+++.|+.||+|..
T Consensus       207 DivliDsPGld~~se~tswid---~~c---ldaDVfVlV~NaEn-tlt~sek~Ff~~vs~~-----KpniFIlnnkwDas  274 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWID---SFC---LDADVFVLVVNAEN-TLTLSEKQFFHKVSEE-----KPNIFILNNKWDAS  274 (749)
T ss_pred             cceeccCCCCCCchhhhHHHH---HHh---hcCCeEEEEecCcc-HhHHHHHHHHHHhhcc-----CCcEEEEechhhhh
Confidence            468999999986654444333   223   38999999955553 4888889888877665     25677777888975

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=4.2e-07  Score=80.95  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee------------C------CeEEEEEeCCCCCCCCcC---
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------G------GFTLNIIDTPGLVEAGYV---   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------~------g~~v~liDTPG~~~~~~~---   59 (256)
                      ||.++||||||+|+++... +...+++.||-++......+            .      -..+.++|.+|+-.+.+.   
T Consensus         8 VGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeG   86 (372)
T COG0012           8 VGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEG   86 (372)
T ss_pred             ecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCC
Confidence            6999999999999999988 67888998988876544321            1      125689999999876543   


Q ss_pred             -cHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189           60 -NYQALELIKGFLLNKTIDVLLYADRLD   86 (256)
Q Consensus        60 -~~~~~~~i~~~l~~~~~d~vL~v~~~d   86 (256)
                       ..+.+..|+      ..|+|+.|++..
T Consensus        87 LGNkFL~~IR------evdaI~hVVr~f  108 (372)
T COG0012          87 LGNKFLDNIR------EVDAIIHVVRCF  108 (372)
T ss_pred             cchHHHHhhh------hcCeEEEEEEec
Confidence             347888885      899999998775

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=98.44  E-value=6.6e-08  Score=73.73  Aligned_cols=114  Identities=15%  Similarity=0.088  Sum_probs=73.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.|++||+-|+-.+-... +..+.+-++ ..+........++  +++.+|||.|..........|.         +.+|
T Consensus         3 lgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayy---------rda~   72 (192)
T KOG0083|consen    3 LGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYY---------RDAD   72 (192)
T ss_pred             cccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhh---------cccc
Confidence            6999999998864443321 222222221 1111122233444  4678999999876655554444         6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD  126 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~  126 (256)
                      ++|+++++......++-+.++.+|.+.-.+.  ..++++.||||+.+.+
T Consensus        73 allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er  119 (192)
T KOG0083|consen   73 ALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHER  119 (192)
T ss_pred             eeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhh
Confidence            9999999987545667778888888775444  5688999999996433

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.41  E-value=4.8e-07  Score=68.39  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=59.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      ||.+|+||+||.|+|.|+..-     ...|   +.  .+++..  -.|||||-.-   .+..+...+..  ...++|+++
T Consensus         7 vG~~gcGKTtL~q~L~G~~~l-----ykKT---QA--ve~~d~--~~IDTPGEy~---~~~~~Y~aL~t--t~~dadvi~   69 (148)
T COG4917           7 VGQVGCGKTTLFQSLYGNDTL-----YKKT---QA--VEFNDK--GDIDTPGEYF---EHPRWYHALIT--TLQDADVII   69 (148)
T ss_pred             ecccccCchhHHHHhhcchhh-----hccc---ce--eeccCc--cccCCchhhh---hhhHHHHHHHH--Hhhccceee
Confidence            699999999999999998642     1112   22  223222  3599999763   33333333322  226899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|..+++..     ..+-..+..++    -+++|=|+||+|+.
T Consensus        70 ~v~~and~~-----s~f~p~f~~~~----~k~vIgvVTK~DLa  103 (148)
T COG4917          70 YVHAANDPE-----SRFPPGFLDIG----VKKVIGVVTKADLA  103 (148)
T ss_pred             eeecccCcc-----ccCCccccccc----ccceEEEEeccccc
Confidence            998877531     11111222333    26799999999995

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.35  E-value=5.6e-07  Score=82.62  Aligned_cols=60  Identities=32%  Similarity=0.430  Sum_probs=49.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      ||-++|||||+||+|.|.+...||..++.|++.+....+   -.+.+.|.||+--+++....+
T Consensus       320 VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf~~~r~  379 (562)
T KOG1424|consen  320 VGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSFSPTRA  379 (562)
T ss_pred             ecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccCCCchHH
Confidence            689999999999999999988899888888877765543   345899999999887765433

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.35  E-value=5.1e-06  Score=74.10  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=37.5

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHH-HHhhcCCcccccEEEEEec
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKA-VTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~-l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .|..+.|+||+|.+....   .    +.     ..+|++++|....    ...+.+..+. +.+.       .-++|+||
T Consensus       147 ~g~d~viieT~Gv~qs~~---~----i~-----~~aD~vlvv~~p~----~gd~iq~~k~gi~E~-------aDIiVVNK  203 (332)
T PRK09435        147 AGYDVILVETVGVGQSET---A----VA-----GMVDFFLLLQLPG----AGDELQGIKKGIMEL-------ADLIVINK  203 (332)
T ss_pred             cCCCEEEEECCCCccchh---H----HH-----HhCCEEEEEecCC----chHHHHHHHhhhhhh-------hheEEeeh
Confidence            467889999999985421   1    11     3689999994322    1233333332 3332       23899999


Q ss_pred             ccCC
Q 025189          120 AQLC  123 (256)
Q Consensus       120 ~D~~  123 (256)
                      +|+.
T Consensus       204 aDl~  207 (332)
T PRK09435        204 ADGD  207 (332)
T ss_pred             hccc
Confidence            9985

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=3.9e-06  Score=75.52  Aligned_cols=175  Identities=14%  Similarity=0.216  Sum_probs=94.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-------------cc---cc--------------CCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERV-------------VT---VN--------------SFQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~-------------~~---~~--------------~~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|...+|||||+-.|+-+.-             +.   -+              ...+.|........+-+-..++|+|+
T Consensus        13 iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDa   92 (428)
T COG5256          13 IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDA   92 (428)
T ss_pred             EcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeC
Confidence            58899999999977774300             00   00              01122333333344455667899999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC------CHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ||..|.      +.+.|.   -...+|+-++|++.....+      ..+.+ ---.|.+.+|-   .+.||++||+|..+
T Consensus        93 PGHrdF------vknmIt---GasqAD~aVLVV~a~~~efE~g~~~~gQtr-EH~~La~tlGi---~~lIVavNKMD~v~  159 (428)
T COG5256          93 PGHRDF------VKNMIT---GASQADVAVLVVDARDGEFEAGFGVGGQTR-EHAFLARTLGI---KQLIVAVNKMDLVS  159 (428)
T ss_pred             CchHHH------HHHhhc---chhhccEEEEEEECCCCccccccccCCchh-HHHHHHHhcCC---ceEEEEEEcccccc
Confidence            996432      111221   1247899999977765421      11122 22345566664   79999999999864


Q ss_pred             CCCCchhHhhhhccHHHHHHHHHhcccCccccccCCchHHHHhcCCCCCCCCcCcccCCCCCCc--hHHHHHHHHHhhhC
Q 025189          125 PDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW--IPTLVKGITDVATN  202 (256)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~~i~~~~~  202 (256)
                         ++-+.|.+- ...+..+++.++ |....  ...||+.-....+..-..        ....|  =+.|++++-..-++
T Consensus       160 ---wde~rf~ei-~~~v~~l~k~~G-~~~~~--v~FIPiSg~~G~Nl~~~s--------~~~pWY~GpTLleaLd~~~~p  224 (428)
T COG5256         160 ---WDEERFEEI-VSEVSKLLKMVG-YNPKD--VPFIPISGFKGDNLTKKS--------ENMPWYKGPTLLEALDQLEPP  224 (428)
T ss_pred             ---cCHHHHHHH-HHHHHHHHHHcC-CCccC--CeEEecccccCCcccccC--------cCCcCccCChHHHHHhccCCC
Confidence               333344332 223444554443 43221  124666333222211111        13458  78899988766555


Q ss_pred             C
Q 025189          203 K  203 (256)
Q Consensus       203 ~  203 (256)
                      +
T Consensus       225 ~  225 (428)
T COG5256         225 E  225 (428)
T ss_pred             C
Confidence            5

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.32  E-value=6.9e-06  Score=74.88  Aligned_cols=169  Identities=16%  Similarity=0.154  Sum_probs=92.6

Q ss_pred             CCCHHHHHHHHhCCCccccc------------CC---CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189            5 GVGKSSTVNSVIGERVVTVN------------SF---QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG   69 (256)
Q Consensus         5 G~GKSSliN~l~g~~~~~~~------------~~---~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~   69 (256)
                      -.|||||+..|+.+.-..-.            +.   .+.|--.......|+|..++|+||||.-|.+..-+.++     
T Consensus        15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl-----   89 (603)
T COG1217          15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVL-----   89 (603)
T ss_pred             cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhh-----
Confidence            47999999999976321111            00   01122222234578899999999999998765544444     


Q ss_pred             hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhc
Q 025189           70 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGA  149 (256)
Q Consensus        70 ~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~  149 (256)
                          .-.|.+|++++.....+-+.-.-+-++|...      -+-|||+||.|..  . ..+++.+.   +.+--+++-.+
T Consensus        90 ----~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~g------L~PIVVvNKiDrp--~-Arp~~Vvd---~vfDLf~~L~A  153 (603)
T COG1217          90 ----SMVDGVLLLVDASEGPMPQTRFVLKKALALG------LKPIVVINKIDRP--D-ARPDEVVD---EVFDLFVELGA  153 (603)
T ss_pred             ----hhcceEEEEEEcccCCCCchhhhHHHHHHcC------CCcEEEEeCCCCC--C-CCHHHHHH---HHHHHHHHhCC
Confidence                3568888886665544433322233444443      3558889999973  2 23343332   23333443333


Q ss_pred             ccCccccccCCchHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCC
Q 025189          150 GLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKS  204 (256)
Q Consensus       150 ~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~  204 (256)
                      .....     ..|+.-.+......+     ....+..+-+..|++++++++|.-+
T Consensus       154 ~deQL-----dFPivYAS~~~G~a~-----~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         154 TDEQL-----DFPIVYASARNGTAS-----LDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             ChhhC-----CCcEEEeeccCceec-----cCccccccchhHHHHHHHHhCCCCC
Confidence            22221     244432222211111     1122223349999999999998753

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.31  E-value=7.4e-07  Score=75.23  Aligned_cols=99  Identities=22%  Similarity=0.386  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v   79 (256)
                      +|-+.||||||+..|++..- ....++.+|..|......++|-++.+.|.||+.++....+. -.+.|.   ..+.+|+|
T Consensus        68 IGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQvia---vArtaDli  143 (364)
T KOG1486|consen   68 IGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIA---VARTADLI  143 (364)
T ss_pred             ecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEE---EeecccEE
Confidence            68999999999999998643 34456778888888888999999999999999987544331 111111   22589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFG  106 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g  106 (256)
                      |.|  +|+++ .+..+.+++.-.+..|
T Consensus       144 lMv--LDatk-~e~qr~~le~ELe~vG  167 (364)
T KOG1486|consen  144 LMV--LDATK-SEDQREILEKELEAVG  167 (364)
T ss_pred             EEE--ecCCc-chhHHHHHHHHHHHhc
Confidence            999  66533 3444556654444434

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=2.5e-06  Score=79.02  Aligned_cols=104  Identities=20%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHhCCCccc--------------ccCCCCCcceeEEEEeeeCC---eEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189            5 GVGKSSTVNSVIGERVVT--------------VNSFQSEALRPVMVSRSKGG---FTLNIIDTPGLVEAGYVNYQALELI   67 (256)
Q Consensus         5 G~GKSSliN~l~g~~~~~--------------~~~~~~~t~~~~~~~~~~~g---~~v~liDTPG~~~~~~~~~~~~~~i   67 (256)
                      -.|||||...|+...-+.              +..-.+.|...+.....+.+   .-+++|||||.-|.+..-..   .+
T Consensus        70 DHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsR---sl  146 (650)
T KOG0462|consen   70 DHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSR---SL  146 (650)
T ss_pred             cCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehe---hh
Confidence            479999999988642211              11112445566666666655   78899999999886533222   22


Q ss_pred             HHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           68 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        68 ~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                            .-+|.+|+|++.... ...   +.+.-+...|..+  -.+|.|+||.|+.
T Consensus       147 ------aac~G~lLvVDA~qG-vqA---QT~anf~lAfe~~--L~iIpVlNKIDlp  190 (650)
T KOG0462|consen  147 ------AACDGALLVVDASQG-VQA---QTVANFYLAFEAG--LAIIPVLNKIDLP  190 (650)
T ss_pred             ------hhcCceEEEEEcCcC-chH---HHHHHHHHHHHcC--CeEEEeeeccCCC
Confidence                  367889999655532 222   2222233333322  5789999999984

>PTZ00099 rab6; Provisional

Probab=98.29  E-value=9.5e-06  Score=66.01  Aligned_cols=71  Identities=14%  Similarity=0.077  Sum_probs=47.0

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      ..++.||||||..........+       +  .++|++|+|+++++..-.+....++..+....+.+  .++++|.||+|
T Consensus        28 ~v~l~iwDt~G~e~~~~~~~~~-------~--~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~--~piilVgNK~D   96 (176)
T PTZ00099         28 PVRLQLWDTAGQERFRSLIPSY-------I--RDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGNKTD   96 (176)
T ss_pred             EEEEEEEECCChHHhhhccHHH-------h--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcc
Confidence            3577899999986543222222       2  68999999998886321223345666665554433  68899999999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      +.
T Consensus        97 L~   98 (176)
T PTZ00099         97 LG   98 (176)
T ss_pred             cc
Confidence            85

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=2.9e-06  Score=65.42  Aligned_cols=119  Identities=15%  Similarity=0.168  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.-|+|||-|+..+.....  ..+++.+ ..+.-....++.|  .++.+|||.|........       +.+.  +++-
T Consensus        17 igdmgvgkscllhqftekkf--madcphtigvefgtriievsgqkiklqiwdtagqerfravt-------rsyy--rgaa   85 (215)
T KOG0097|consen   17 IGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT-------RSYY--RGAA   85 (215)
T ss_pred             EccccccHHHHHHHHHHHHH--hhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHH-------HHHh--cccc
Confidence            58999999999998887643  2232211 1111122234444  467899999985433222       2222  5788


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhH
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV  132 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~  132 (256)
                      ..|.|+++...+.......++..-+..-..+  --++++.||+|+...++..+++
T Consensus        86 galmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee  138 (215)
T KOG0097|consen   86 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE  138 (215)
T ss_pred             ceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH
Confidence            8899988885323333333443333332222  3356677999986666666654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=1.1e-05  Score=74.79  Aligned_cols=104  Identities=14%  Similarity=0.126  Sum_probs=76.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC--
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT--   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~--   75 (256)
                      ||.--.|||||+..|-+.+++. +...+-|++.-.++...+   ...++++||||..        ....++.    ++  
T Consensus        11 mGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe--------AFt~mRa----RGa~   77 (509)
T COG0532          11 MGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE--------AFTAMRA----RGAS   77 (509)
T ss_pred             eCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH--------HHHHHHh----cCCc
Confidence            5777899999999999988753 334567777777777764   4689999999974        3334432    33  


Q ss_pred             -CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 -IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 -~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       .|.++||+.+|+ -+..+..+.++.++..-     .|++|..||.|..
T Consensus        78 vtDIaILVVa~dD-Gv~pQTiEAI~hak~a~-----vP~iVAiNKiDk~  120 (509)
T COG0532          78 VTDIAILVVAADD-GVMPQTIEAINHAKAAG-----VPIVVAINKIDKP  120 (509)
T ss_pred             cccEEEEEEEccC-CcchhHHHHHHHHHHCC-----CCEEEEEecccCC
Confidence             699999999987 35555555555554442     8999999999985

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=3.7e-06  Score=77.91  Aligned_cols=106  Identities=14%  Similarity=0.193  Sum_probs=72.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      ||.--.|||||+.+|-+..++. +...+.|++.-.+.... .|..+++.||||.-        ....|+.- -..-.|.+
T Consensus       159 MGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa--------AF~aMRaR-GA~vtDIv  228 (683)
T KOG1145|consen  159 MGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPGHA--------AFSAMRAR-GANVTDIV  228 (683)
T ss_pred             eecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCcHH--------HHHHHHhc-cCccccEE
Confidence            5777899999999999988753 33455666665555444 68999999999973        33344320 01347999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      ++|+..|+ .+-.+   .++.|+..-..+  .|+++.+||+|.
T Consensus       229 VLVVAadD-GVmpQ---T~EaIkhAk~A~--VpiVvAinKiDk  265 (683)
T KOG1145|consen  229 VLVVAADD-GVMPQ---TLEAIKHAKSAN--VPIVVAINKIDK  265 (683)
T ss_pred             EEEEEccC-CccHh---HHHHHHHHHhcC--CCEEEEEeccCC
Confidence            99988887 34444   444444433222  899999999996

>PRK13768 GTPase; Provisional

Probab=98.20  E-value=3.5e-06  Score=72.54  Aligned_cols=80  Identities=15%  Similarity=0.054  Sum_probs=43.6

Q ss_pred             eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      ..+.+|||||..+....... ...+.+.+.....+++++|++... ..+..+......+....-....+++++|+||+|+
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~-~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRES-GRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL  174 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHH-HHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence            36899999998764322211 112222222123899999955532 2344454444333211100123899999999998


Q ss_pred             CC
Q 025189          123 CP  124 (256)
Q Consensus       123 ~~  124 (256)
                      ..
T Consensus       175 ~~  176 (253)
T PRK13768        175 LS  176 (253)
T ss_pred             cC
Confidence            63

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.18  E-value=4.2e-07  Score=75.29  Aligned_cols=72  Identities=24%  Similarity=0.193  Sum_probs=46.4

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      ++..+.+|||||...   .+.+.++++++++....++-+++|++.+.   ..++...+....+.+     ...=+++||.
T Consensus        82 ~~~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~-----~~~~lIlTKl  150 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSP---RDEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAF-----GIDGLILTKL  150 (196)
T ss_dssp             TTSSEEEEEE-SSSS---THHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHS-----STCEEEEEST
T ss_pred             cCCCEEEEecCCcch---hhHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhcc-----cCceEEEEee
Confidence            346789999999853   34455566666554447888889966653   244444555555555     3446779999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       151 Det  153 (196)
T PF00448_consen  151 DET  153 (196)
T ss_dssp             TSS
T ss_pred             cCC
Confidence            975

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.14  E-value=8.5e-06  Score=82.11  Aligned_cols=102  Identities=14%  Similarity=0.066  Sum_probs=65.7

Q ss_pred             CCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC------------------eEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189            6 VGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG------------------FTLNIIDTPGLVEAGYVNYQALELI   67 (256)
Q Consensus         6 ~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g------------------~~v~liDTPG~~~~~~~~~~~~~~i   67 (256)
                      ++||||+.+|.+.+++. +...+-|++.-.+....+.                  ..+++|||||..+..       ...
T Consensus       472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~-------~lr  543 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT-------SLR  543 (1049)
T ss_pred             cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH-------HHH
Confidence            57999999999988743 3334445544433333221                  127999999964321       111


Q ss_pred             HHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           68 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        68 ~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...  ...+|++++|+++++ .+.......++.+... +    .|+++|+||+|+.
T Consensus       544 ~~g--~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-~----iPiIVViNKiDL~  591 (1049)
T PRK14845        544 KRG--GSLADLAVLVVDINE-GFKPQTIEAINILRQY-K----TPFVVAANKIDLI  591 (1049)
T ss_pred             Hhh--cccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-C----CCEEEEEECCCCc
Confidence            111  146899999988775 3566666667666543 2    6899999999985

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.13  E-value=3.8e-06  Score=72.98  Aligned_cols=67  Identities=24%  Similarity=0.258  Sum_probs=51.0

Q ss_pred             CCCCCCCHHHHHHHHhCC-----CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELI   67 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i   67 (256)
                      +|-+|+|||||||++...     ..+.++..++.|..............+-++||||+..++..+.+-.-.+
T Consensus       149 vGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKL  220 (335)
T KOG2485|consen  149 VGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKL  220 (335)
T ss_pred             EcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhh
Confidence            689999999999998753     4567777888887766544445666789999999999987776544333

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.13  E-value=4.2e-06  Score=73.46  Aligned_cols=79  Identities=22%  Similarity=0.266  Sum_probs=59.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--------------C---eEEEEEeCCCCCCCCcCc---
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--------------G---FTLNIIDTPGLVEAGYVN---   60 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--------------g---~~v~liDTPG~~~~~~~~---   60 (256)
                      ||.++|||||++|+|+..... ..+++.||-++......+.              +   -.++++|..|+-.+.+..   
T Consensus        26 VGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GL  104 (391)
T KOG1491|consen   26 VGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGL  104 (391)
T ss_pred             eeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCc
Confidence            699999999999999998764 7788888888766544322              1   157999999998765433   


Q ss_pred             -HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189           61 -YQALELIKGFLLNKTIDVLLYADRLD   86 (256)
Q Consensus        61 -~~~~~~i~~~l~~~~~d~vL~v~~~d   86 (256)
                       ...+..|+      .+|+++-|++..
T Consensus       105 GN~FLs~iR------~vDaifhVVr~f  125 (391)
T KOG1491|consen  105 GNKFLSHIR------HVDAIFHVVRAF  125 (391)
T ss_pred             hHHHHHhhh------hccceeEEEEec
Confidence             36777775      789999887664

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.12  E-value=2.2e-05  Score=73.13  Aligned_cols=68  Identities=9%  Similarity=0.094  Sum_probs=42.6

Q ss_pred             eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      ..++++||||..       .+.+.+...+  ..+|++++|++.+..-......+.+. +.+.+|-   +++++|+||+|+
T Consensus       117 ~~i~~IDtPGH~-------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~iIVvlNKiDl  183 (460)
T PTZ00327        117 RHVSFVDCPGHD-------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KHIIILQNKIDL  183 (460)
T ss_pred             ceEeeeeCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---CcEEEEEecccc
Confidence            478999999952       3444433322  47899999977764212232233333 2334443   689999999998


Q ss_pred             C
Q 025189          123 C  123 (256)
Q Consensus       123 ~  123 (256)
                      .
T Consensus       184 v  184 (460)
T PTZ00327        184 V  184 (460)
T ss_pred             c
Confidence            5

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=3e-06  Score=76.68  Aligned_cols=71  Identities=17%  Similarity=0.067  Sum_probs=46.1

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +..+.||||||-..   .+...+.++.+.+....+|.+++|  +++..-......+++.+.. +     ...=+++||.|
T Consensus       320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~~PdevlLV--LsATtk~~d~~~i~~~F~~-~-----~idglI~TKLD  388 (436)
T PRK11889        320 RVDYILIDTAGKNY---RASETVEEMIETMGQVEPDYICLT--LSASMKSKDMIEIITNFKD-I-----HIDGIVFTKFD  388 (436)
T ss_pred             CCCEEEEeCccccC---cCHHHHHHHHHHHhhcCCCeEEEE--ECCccChHHHHHHHHHhcC-C-----CCCEEEEEccc
Confidence            45789999999853   445566677766655578888888  4442222233455554443 2     45678899999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      ..
T Consensus       389 ET  390 (436)
T PRK11889        389 ET  390 (436)
T ss_pred             CC
Confidence            75

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=1.7e-05  Score=70.48  Aligned_cols=73  Identities=22%  Similarity=0.393  Sum_probs=46.1

Q ss_pred             EEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           45 LNIIDTPGLVEAGYVN----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        45 v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      ++||||||+.+.....    ......+.=|  ..++|.|+++++.--...+++-.+++..|+   |.+  ..+-||+||+
T Consensus       149 vtiVdtPGILsgeKQrisR~ydF~~v~~WF--aeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E--dkiRVVLNKA  221 (532)
T KOG1954|consen  149 VTIVDTPGILSGEKQRISRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFKRVIDALK---GHE--DKIRVVLNKA  221 (532)
T ss_pred             eeeeccCcccccchhcccccCChHHHHHHH--HHhccEEEEEechhhccccHHHHHHHHHhh---CCc--ceeEEEeccc
Confidence            6999999999865331    1111122111  158999999955443335556566665554   555  7889999999


Q ss_pred             cCCC
Q 025189          121 QLCP  124 (256)
Q Consensus       121 D~~~  124 (256)
                      |..+
T Consensus       222 DqVd  225 (532)
T KOG1954|consen  222 DQVD  225 (532)
T ss_pred             cccC
Confidence            9753

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.10  E-value=1.1e-06  Score=70.32  Aligned_cols=111  Identities=14%  Similarity=0.066  Sum_probs=72.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|..+|||||+|.+.+..- +..+...+..........++  ..+.+.+|||.|..+.+...+.|.         +++.+
T Consensus        26 vGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy---------rgaqa   95 (246)
T KOG4252|consen   26 VGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY---------RGAQA   95 (246)
T ss_pred             ECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh---------ccccc
Confidence            5889999999999988542 11111111111111111222  234557899999876554433333         68889


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      .++|++-.+....+....+.+.+....++   .|+++|-||.|+.+
T Consensus        96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlve  138 (246)
T KOG4252|consen   96 SVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVE  138 (246)
T ss_pred             eEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhH
Confidence            99998777633556677888888887766   89999999999863

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=1.4e-05  Score=64.35  Aligned_cols=105  Identities=10%  Similarity=0.128  Sum_probs=66.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|--|+||||+++.|--.+...+    ..|.....-..++.+..+++||.-|.......-..|.         ...++++
T Consensus        23 lGLD~AGKTTILykLk~~E~vtt----vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~---------~~t~~lI   89 (181)
T KOG0070|consen   23 VGLDAAGKTTILYKLKLGEIVTT----VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYF---------QNTQGLI   89 (181)
T ss_pred             EeccCCCceeeeEeeccCCcccC----CCccccceeEEEEcceEEEEEecCCCcccccchhhhc---------cCCcEEE
Confidence            57889999999988876654333    2233344445677899999999999854332222222         5789999


Q ss_pred             EEEeCCC-CCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccC
Q 025189           81 YADRLDA-YRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQL  122 (256)
Q Consensus        81 ~v~~~d~-~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~  122 (256)
                      ||++-.+ .|+.+    .-+.+..++...  ...++++..||-|+
T Consensus        90 fVvDS~Dr~Ri~e----ak~eL~~~l~~~~l~~~~llv~aNKqD~  130 (181)
T KOG0070|consen   90 FVVDSSDRERIEE----AKEELHRMLAEPELRNAPLLVFANKQDL  130 (181)
T ss_pred             EEEeCCcHHHHHH----HHHHHHHHHcCcccCCceEEEEechhhc
Confidence            9954443 12322    333344443322  24688999999998

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=2e-05  Score=71.27  Aligned_cols=79  Identities=15%  Similarity=0.050  Sum_probs=42.3

Q ss_pred             eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcc---cccEEEE
Q 025189           40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI---WRKSLLV  116 (256)
Q Consensus        40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~---~~~~ivv  116 (256)
                      +.+..+.+|||||....   +....+.+........++-.++|++...  -.+.-.++++.+....+...   ....=+|
T Consensus       213 l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~~~~~~lLVLsAts--~~~~l~evi~~f~~~~~~p~~~~~~~~~~I  287 (374)
T PRK14722        213 LRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGADTPVQRLLLLNATS--HGDTLNEVVQAYRSAAGQPKAALPDLAGCI  287 (374)
T ss_pred             hcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccCCCCeEEEEecCcc--ChHHHHHHHHHHHHhhcccccccCCCCEEE
Confidence            34668899999998643   3334444443222234455667744432  12233345555555433210   0135688


Q ss_pred             EecccCC
Q 025189          117 LTHAQLC  123 (256)
Q Consensus       117 ~Tk~D~~  123 (256)
                      +||.|..
T Consensus       288 ~TKlDEt  294 (374)
T PRK14722        288 LTKLDEA  294 (374)
T ss_pred             EeccccC
Confidence            8999975

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=4.8e-05  Score=68.74  Aligned_cols=71  Identities=10%  Similarity=0.115  Sum_probs=44.0

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +..+.||||||...   .+.+.+.+++.+.....+|.+++|  ++.. ...  .++.+.+.. |..  ....-+++||.|
T Consensus       285 ~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~~p~~~~LV--Lsag-~~~--~d~~~i~~~-f~~--l~i~glI~TKLD  353 (407)
T PRK12726        285 CVDHILIDTVGRNY---LAEESVSEISAYTDVVHPDLTCFT--FSSG-MKS--ADVMTILPK-LAE--IPIDGFIITKMD  353 (407)
T ss_pred             CCCEEEEECCCCCc---cCHHHHHHHHHHhhccCCceEEEE--CCCc-ccH--HHHHHHHHh-cCc--CCCCEEEEEccc
Confidence            46889999999854   445666677766544567888888  4431 222  223332222 322  145678899999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      ..
T Consensus       354 ET  355 (407)
T PRK12726        354 ET  355 (407)
T ss_pred             CC
Confidence            75

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.01  E-value=3.7e-05  Score=79.34  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-C-------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc----CcHH----HH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS-F-------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY----VNYQ----AL   64 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~-~-------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~----~~~~----~~   64 (256)
                      ||++|+||||+++.. |-.. +... .       .+.|..   |..-+ ...-+++||+|..-...    .+..    .+
T Consensus       117 iG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~---c~wwf-~~~avliDtaG~y~~~~~~~~~~~~~W~~fL  190 (1169)
T TIGR03348       117 IGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRN---CDWWF-TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL  190 (1169)
T ss_pred             ECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcc---cceEe-cCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence            699999999999876 5432 2211 0       011221   22112 22346999999765432    2222    22


Q ss_pred             HHHHHhhhcCCCcEEEEEEeCCCCC-CCHHH--------HHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           65 ELIKGFLLNKTIDVLLYADRLDAYR-VDDLD--------RQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        65 ~~i~~~l~~~~~d~vL~v~~~d~~r-~~~~~--------~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..+++.=....+|.||+++++++-- .++++        ..-++.+.+.+|-.  .|++||+||+|+.
T Consensus       191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhh
Confidence            2222221235799999998887421 12222        23345566667655  8999999999975

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.00  E-value=5e-05  Score=70.56  Aligned_cols=74  Identities=16%  Similarity=0.308  Sum_probs=45.5

Q ss_pred             EEEEEeCCCCCCCCcC------cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189           44 TLNIIDTPGLVEAGYV------NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL  117 (256)
Q Consensus        44 ~v~liDTPG~~~~~~~------~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~  117 (256)
                      .++++|.||+..+-..      .+.+.+.-+.++  ..+++|++|+.  +.+++.+-..+-..+.++=+.+  +++|+|+
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~G--rRTIfVL  486 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHG--RRTIFVL  486 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCC--CeeEEEE
Confidence            4589999999875221      122333333333  58999999954  4355444333334444443333  8999999


Q ss_pred             ecccCC
Q 025189          118 THAQLC  123 (256)
Q Consensus       118 Tk~D~~  123 (256)
                      ||.|+.
T Consensus       487 TKVDlA  492 (980)
T KOG0447|consen  487 TKVDLA  492 (980)
T ss_pred             eecchh
Confidence            999985

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=2.4e-06  Score=67.16  Aligned_cols=112  Identities=17%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--cccCCC--CCcceeEEEEe-------eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--TVNSFQ--SEALRPVMVSR-------SKGGFTLNIIDTPGLVEAGYVNYQALELIKG   69 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--~~~~~~--~~t~~~~~~~~-------~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~   69 (256)
                      +|.+||||+|++-..+.....  .++...  ...++ ..+..       ......+.+|||.|........       ..
T Consensus        15 LGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKr-vvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT-------TA   86 (219)
T KOG0081|consen   15 LGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKR-VVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT-------TA   86 (219)
T ss_pred             hccCCCCceEEEEEecCCcccceeEEEeecccccce-EEEeccCCCCCCcceEEEEeeeccccHHHHHHHH-------HH
Confidence            599999999998766654320  011100  00011 11111       1112356899999985432221       11


Q ss_pred             hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhh-cCCcccccEEEEEecccCCC
Q 025189           70 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT-FGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        70 ~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~-~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +.  +.+-.||+++++......-+...++.+|+-. .-++  .-+++..||+|+.+
T Consensus        87 Ff--RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~  138 (219)
T KOG0081|consen   87 FF--RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLED  138 (219)
T ss_pred             HH--HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhh
Confidence            22  4677889998888655445667777777654 2333  56889999999853

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=3.8e-05  Score=63.43  Aligned_cols=112  Identities=15%  Similarity=0.220  Sum_probs=66.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh-cCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL-NKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~v   79 (256)
                      +|.+++|||+|+-.|.....  ...+  +..++......++.-.+++||.||-..       ....+.++++ ...+-+|
T Consensus        44 ~Gl~dSGKT~LF~qL~~gs~--~~Tv--tSiepn~a~~r~gs~~~~LVD~PGH~r-------lR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   44 VGLSDSGKTSLFTQLITGSH--RGTV--TSIEPNEATYRLGSENVTLVDLPGHSR-------LRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             EecCCCCceeeeeehhcCCc--cCee--eeeccceeeEeecCcceEEEeCCCcHH-------HHHHHHHHccccccceeE
Confidence            59999999999977776532  1111  222333333444555589999999742       2223333332 2367788


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcC----CcccccEEEEEecccCCCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFG----KQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g----~~~~~~~ivv~Tk~D~~~~  125 (256)
                      +||  +|+..+..+-....+.+-.+.-    ..-..|+++.-||.|+...
T Consensus       113 VFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA  160 (238)
T KOG0090|consen  113 VFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA  160 (238)
T ss_pred             EEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence            898  5554555555555555444332    2224689999999998644

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=97.97  E-value=1.9e-05  Score=69.13  Aligned_cols=120  Identities=14%  Similarity=0.167  Sum_probs=73.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~   78 (256)
                      ||-|++|||||||+|++..+..... -..|.++..+.... .|..+.+.||-||...  ........+...| .-..+|+
T Consensus       184 VGYTNaGKsTLikaLT~Aal~p~dr-LFATLDpT~h~a~Lpsg~~vlltDTvGFisd--LP~~LvaAF~ATLeeVaeadl  260 (410)
T KOG0410|consen  184 VGYTNAGKSTLIKALTKAALYPNDR-LFATLDPTLHSAHLPSGNFVLLTDTVGFISD--LPIQLVAAFQATLEEVAEADL  260 (410)
T ss_pred             EeecCccHHHHHHHHHhhhcCccch-hheeccchhhhccCCCCcEEEEeechhhhhh--CcHHHHHHHHHHHHHHhhcce
Confidence            5889999999999999765533222 23344555555544 4778899999999853  1111111221111 1148999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcC--CcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g--~~~~~~~ivv~Tk~D~~  123 (256)
                      +|.|.+++...........+..+.++-=  .....+++=|-||.|..
T Consensus       261 llHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e  307 (410)
T KOG0410|consen  261 LLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE  307 (410)
T ss_pred             EEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence            9999887753344444456666665521  12245677788888864

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.94  E-value=2.1e-05  Score=68.40  Aligned_cols=72  Identities=14%  Similarity=0.135  Sum_probs=44.9

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh------cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL------NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL  114 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~------~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i  114 (256)
                      .+..+.+|||||....   +...+++++.+..      ...+|.+++|++...   ...+......+.+..     ...-
T Consensus       153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~-----~~~g  221 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAV-----GLTG  221 (272)
T ss_pred             CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhC-----CCCE
Confidence            4578899999998653   4444444444331      234899999966642   333333344444433     3568


Q ss_pred             EEEecccCC
Q 025189          115 LVLTHAQLC  123 (256)
Q Consensus       115 vv~Tk~D~~  123 (256)
                      +|+||.|..
T Consensus       222 ~IlTKlDe~  230 (272)
T TIGR00064       222 IILTKLDGT  230 (272)
T ss_pred             EEEEccCCC
Confidence            999999975

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.93  E-value=5.7e-06  Score=70.61  Aligned_cols=76  Identities=17%  Similarity=0.140  Sum_probs=34.0

Q ss_pred             EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHH---HHHHHhhcCCcccccEEEEEecc
Q 025189           44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI---IKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~---~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+.++||||..+.-... .....+-+.+.....-+++++  +|..++.+...-+   +-.+.-++.-  .-|.+.|+||+
T Consensus        92 ~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~L--vD~~~~~~~~~f~s~~L~s~s~~~~~--~lP~vnvlsK~  166 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFL--VDSSFCSDPSKFVSSLLLSLSIMLRL--ELPHVNVLSKI  166 (238)
T ss_dssp             SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEE--E-GGG-SSHHHHHHHHHHHHHHHHHH--TSEEEEEE--G
T ss_pred             cEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEE--EecccccChhhHHHHHHHHHHHHhhC--CCCEEEeeecc
Confidence            57999999998643222 233344444433334455666  4554544422211   1122222211  27999999999


Q ss_pred             cCCC
Q 025189          121 QLCP  124 (256)
Q Consensus       121 D~~~  124 (256)
                      |+..
T Consensus       167 Dl~~  170 (238)
T PF03029_consen  167 DLLS  170 (238)
T ss_dssp             GGS-
T ss_pred             Cccc
Confidence            9963

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.92  E-value=2.2e-05  Score=71.00  Aligned_cols=72  Identities=14%  Similarity=0.053  Sum_probs=44.0

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      ....+.+|||.|-.   ..+...+++++.++......-+.+|++.+  .-.+.-+.+++.+...      ..--+++||.
T Consensus       280 ~~~d~ILVDTaGrs---~~D~~~i~el~~~~~~~~~i~~~Lvlsat--~K~~dlkei~~~f~~~------~i~~~I~TKl  348 (407)
T COG1419         280 RDCDVILVDTAGRS---QYDKEKIEELKELIDVSHSIEVYLVLSAT--TKYEDLKEIIKQFSLF------PIDGLIFTKL  348 (407)
T ss_pred             hcCCEEEEeCCCCC---ccCHHHHHHHHHHHhccccceEEEEEecC--cchHHHHHHHHHhccC------CcceeEEEcc
Confidence            35578999999984   56777888888877443333344453443  2233334444444333      4456788999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |.+
T Consensus       349 DET  351 (407)
T COG1419         349 DET  351 (407)
T ss_pred             ccc
Confidence            975

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=3.9e-05  Score=60.90  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|--++|||||++.|-....+..    ..|.+|..-...++|.+++.+|.-|-.       ++.+..+.|+  +.+|+++
T Consensus        26 lGLDNAGKTTLLHMLKdDrl~qh----vPTlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf--~~v~~iv   92 (193)
T KOG0077|consen   26 LGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF--PQVDAIV   92 (193)
T ss_pred             EeecCCchhhHHHHHcccccccc----CCCcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH--hhhceeE
Confidence            47789999999999887765322    234455555678999999999999864       3334445555  6889999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |.+++-+.....+.+.-++.+... -.-.|.|++++.||.|..
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p  134 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIP  134 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCC
Confidence            885554322122222233322221 011368999999999984

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=5e-05  Score=73.83  Aligned_cols=108  Identities=12%  Similarity=0.169  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--cccCCC---------------CCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--TVNSFQ---------------SEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQ   62 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--~~~~~~---------------~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~   62 (256)
                      +|...+|||||.-+|+-..-.  ..+...               +.|-.....+..+.+ ..+++|||||.-|...   +
T Consensus        16 ~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~---E   92 (697)
T COG0480          16 VAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTI---E   92 (697)
T ss_pred             EeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHH---H
Confidence            356789999999888753210  011111               223334445667886 9999999999987642   2


Q ss_pred             HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +...+      +-.|..+.|++... .+......++++..+.-     .|.++++||+|..
T Consensus        93 V~rsl------rvlDgavvVvdave-GV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~  141 (697)
T COG0480          93 VERSL------RVLDGAVVVVDAVE-GVEPQTETVWRQADKYG-----VPRILFVNKMDRL  141 (697)
T ss_pred             HHHHH------HhhcceEEEEECCC-CeeecHHHHHHHHhhcC-----CCeEEEEECcccc
Confidence            33333      35788888866665 34555556666655543     7999999999975

>PRK14974 cell division protein FtsY; Provisional

Probab=97.86  E-value=3.8e-05  Score=68.69  Aligned_cols=71  Identities=14%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +..+.||||+|....   +...+..++.....-.+|.+++|++...   ........+.+.+..     ...-+++||.|
T Consensus       222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~~~pd~~iLVl~a~~---g~d~~~~a~~f~~~~-----~~~giIlTKlD  290 (336)
T PRK14974        222 GIDVVLIDTAGRMHT---DANLMDELKKIVRVTKPDLVIFVGDALA---GNDAVEQAREFNEAV-----GIDGVILTKVD  290 (336)
T ss_pred             CCCEEEEECCCccCC---cHHHHHHHHHHHHhhCCceEEEeecccc---chhHHHHHHHHHhcC-----CCCEEEEeeec
Confidence            567899999998642   3445555555443347889999954432   222233334443333     45688999999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      ..
T Consensus       291 ~~  292 (336)
T PRK14974        291 AD  292 (336)
T ss_pred             CC
Confidence            85

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.84  E-value=0.00016  Score=64.29  Aligned_cols=75  Identities=19%  Similarity=0.126  Sum_probs=40.7

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL  117 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~  117 (256)
                      .+..+.||||||........-+-++.+.+.+.   ...+|-+++|++...   ......-.....+..     ...-+|+
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~-----~~~giIl  266 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAV-----GLTGIIL  266 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhC-----CCCEEEE
Confidence            45678999999986533221122223222211   235788888855553   222222223333322     4668999


Q ss_pred             ecccCC
Q 025189          118 THAQLC  123 (256)
Q Consensus       118 Tk~D~~  123 (256)
                      ||.|..
T Consensus       267 TKlD~t  272 (318)
T PRK10416        267 TKLDGT  272 (318)
T ss_pred             ECCCCC
Confidence            999965

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.84  E-value=3.8e-05  Score=70.58  Aligned_cols=72  Identities=15%  Similarity=0.063  Sum_probs=39.7

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.+|||+|...   .+....+.++.+......+-.++|++..  . ...   .+..+...|..  ....=+++||.
T Consensus       268 ~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~at--~-~~~---~~~~~~~~f~~--~~~~~~I~TKl  336 (420)
T PRK14721        268 RGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNAT--S-SGD---TLDEVISAYQG--HGIHGCIITKV  336 (420)
T ss_pred             cCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcCC--C-CHH---HHHHHHHHhcC--CCCCEEEEEee
Confidence            455779999999853   2344555555443223455566774433  2 122   22233333332  14567889999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       337 DEt  339 (420)
T PRK14721        337 DEA  339 (420)
T ss_pred             eCC
Confidence            975

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.81  E-value=0.00025  Score=62.87  Aligned_cols=110  Identities=18%  Similarity=0.156  Sum_probs=65.1

Q ss_pred             CCCCCCHHHHHHHHhCCCccc----------ccC----------------------CCCCcceeEEEEeeeCCeEEEEEe
Q 025189            2 GKGGVGKSSTVNSVIGERVVT----------VNS----------------------FQSEALRPVMVSRSKGGFTLNIID   49 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~~~~~----------~~~----------------------~~~~t~~~~~~~~~~~g~~v~liD   49 (256)
                      |.---||||||-.|+......          .|.                      -++.|-+..+....-+.+++.|.|
T Consensus        13 GSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiAD   92 (431)
T COG2895          13 GSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIAD   92 (431)
T ss_pred             ccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEec
Confidence            566679999999998752210          110                      011222322223334577899999


Q ss_pred             CCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC
Q 025189           50 TPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD  126 (256)
Q Consensus        50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~  126 (256)
                      |||..       +|.+++..  -...+|+.+++  +|+.. +-++. +--..|...+|-   +|+++.+||+|+.+-+
T Consensus        93 TPGHe-------QYTRNMaT--GASTadlAIlL--VDAR~Gvl~QT-rRHs~I~sLLGI---rhvvvAVNKmDLvdy~  155 (431)
T COG2895          93 TPGHE-------QYTRNMAT--GASTADLAILL--VDARKGVLEQT-RRHSFIASLLGI---RHVVVAVNKMDLVDYS  155 (431)
T ss_pred             CCcHH-------HHhhhhhc--ccccccEEEEE--EecchhhHHHh-HHHHHHHHHhCC---cEEEEEEeeecccccC
Confidence            99974       45555542  11468888888  45422 22222 222345566665   7999999999996433

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=4.2e-05  Score=74.72  Aligned_cols=75  Identities=17%  Similarity=0.074  Sum_probs=41.3

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.||||||...   .+....+.++.......++-+++|++..  .-.+.-.++++.+....+.   ...=+|+||.
T Consensus       262 ~~~D~VLIDTAGRs~---~d~~l~eel~~l~~~~~p~e~~LVLsAt--~~~~~l~~i~~~f~~~~~~---~i~glIlTKL  333 (767)
T PRK14723        262 GDKHLVLIDTVGMSQ---RDRNVSEQIAMLCGVGRPVRRLLLLNAA--SHGDTLNEVVHAYRHGAGE---DVDGCIITKL  333 (767)
T ss_pred             cCCCEEEEeCCCCCc---cCHHHHHHHHHHhccCCCCeEEEEECCC--CcHHHHHHHHHHHhhcccC---CCCEEEEecc
Confidence            355789999999854   3344445554433334577778884433  2111222344444332221   2456889999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       334 DEt  336 (767)
T PRK14723        334 DEA  336 (767)
T ss_pred             CCC
Confidence            975

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.80  E-value=0.00012  Score=64.53  Aligned_cols=61  Identities=15%  Similarity=0.195  Sum_probs=35.9

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .|..+.|+||||.+....   .   .+      ..+|.++++....   ..++-......+.+       ++.++|+||+
T Consensus       125 ~g~D~viidT~G~~~~e~---~---i~------~~aD~i~vv~~~~---~~~el~~~~~~l~~-------~~~ivv~NK~  182 (300)
T TIGR00750       125 AGYDVIIVETVGVGQSEV---D---IA------NMADTFVVVTIPG---TGDDLQGIKAGLME-------IADIYVVNKA  182 (300)
T ss_pred             CCCCEEEEeCCCCchhhh---H---HH------HhhceEEEEecCC---ccHHHHHHHHHHhh-------hccEEEEEcc
Confidence            467889999999874321   1   12      3578888873221   11222222222221       5779999999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |+.
T Consensus       183 Dl~  185 (300)
T TIGR00750       183 DGE  185 (300)
T ss_pred             ccc
Confidence            985

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.78  E-value=3.8e-05  Score=65.87  Aligned_cols=73  Identities=21%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             eEEEEEeCCCCCCCC---cCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHH---HhhcCCcccccEEEE
Q 025189           43 FTLNIIDTPGLVEAG---YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAV---TGTFGKQIWRKSLLV  116 (256)
Q Consensus        43 ~~v~liDTPG~~~~~---~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l---~~~~g~~~~~~~ivv  116 (256)
                      .+..+|||||..+.-   .+..-+.+.++    ...+-++.||  +|..|.+... .++.-+   .+++-+ ..-|+|+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~la----ss~ptvv~Yv--vDt~rs~~p~-tFMSNMlYAcSilyk-tklp~ivv  187 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLA----SSFPTVVVYV--VDTPRSTSPT-TFMSNMLYACSILYK-TKLPFIVV  187 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHh----hcCCeEEEEE--ecCCcCCCch-hHHHHHHHHHHHHHh-ccCCeEEE
Confidence            456899999998742   22233333333    3578889999  4543432221 121111   111111 12799999


Q ss_pred             EecccCC
Q 025189          117 LTHAQLC  123 (256)
Q Consensus       117 ~Tk~D~~  123 (256)
                      +||+|..
T Consensus       188 fNK~Dv~  194 (366)
T KOG1532|consen  188 FNKTDVS  194 (366)
T ss_pred             Eeccccc
Confidence            9999985

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.00022  Score=67.05  Aligned_cols=71  Identities=14%  Similarity=0.140  Sum_probs=36.7

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.||||||....+   ....+.+........ ...++|++... .. .....+++.+...      ...-+|+||.
T Consensus       427 ~~~DLVLIDTaG~s~~D---~~l~eeL~~L~aa~~-~a~lLVLpAts-s~-~Dl~eii~~f~~~------~~~gvILTKl  494 (559)
T PRK12727        427 RDYKLVLIDTAGMGQRD---RALAAQLNWLRAARQ-VTSLLVLPANA-HF-SDLDEVVRRFAHA------KPQGVVLTKL  494 (559)
T ss_pred             ccCCEEEecCCCcchhh---HHHHHHHHHHHHhhc-CCcEEEEECCC-Ch-hHHHHHHHHHHhh------CCeEEEEecC
Confidence            35678999999986432   222222222111122 23455544442 11 2223344444432      4677999999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       495 DEt  497 (559)
T PRK12727        495 DET  497 (559)
T ss_pred             cCc
Confidence            974

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=97.76  E-value=4e-05  Score=64.13  Aligned_cols=118  Identities=18%  Similarity=0.200  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|+||+||||+=-.++..-.+.-....+.|-+....+..+-| .-+.+||.-|....   -+.++..-+.- .-...+++
T Consensus        10 MGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f---men~~~~q~d~-iF~nV~vl   85 (295)
T KOG3886|consen   10 MGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF---MENYLSSQEDN-IFRNVQVL   85 (295)
T ss_pred             eccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH---HHHHHhhcchh-hheeheee
Confidence            699999999998888865444333344555556555555555 67789999887421   01111100000 00468999


Q ss_pred             EEEEeCCCCCCCHHH---HHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           80 LYADRLDAYRVDDLD---RQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        80 L~v~~~d~~r~~~~~---~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      ++|+++....+...-   +..++.+.+.-++   -++...++|.|+...
T Consensus        86 i~vFDves~e~~~D~~~yqk~Le~ll~~SP~---AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   86 IYVFDVESREMEKDFHYYQKCLEALLQNSPE---AKIFCLLHKMDLVQE  131 (295)
T ss_pred             eeeeeccchhhhhhHHHHHHHHHHHHhcCCc---ceEEEEEeechhccc
Confidence            999888764343222   2334444444333   467778899998643

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.00025  Score=66.44  Aligned_cols=179  Identities=13%  Similarity=0.197  Sum_probs=96.2

Q ss_pred             CCCCCCCHHHHHHHHhCC--------------Cccccc----------------CCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGE--------------RVVTVN----------------SFQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~--------------~~~~~~----------------~~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|...+||||+.-.|+-.              ..+..+                ...+.|........+-....++|+|+
T Consensus       183 ~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDa  262 (603)
T KOG0458|consen  183 LGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDA  262 (603)
T ss_pred             EeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEecC
Confidence            588899999998877642              000000                01122333333333445667899999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCH------HHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD------LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~------~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ||..|..  ..    .|.   .+..+|+-++|++.+...|..      ...+.. .|.+.+|-   .+.||++||+|...
T Consensus       263 PGhkdFi--~n----mi~---g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lgi---~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  263 PGHKDFI--PN----MIS---GASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLGI---SQLIVAINKMDLVS  329 (603)
T ss_pred             CCccccc--hh----hhc---cccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcCc---ceEEEEeecccccC
Confidence            9977642  11    111   113688888887666433321      122222 34455564   68999999999863


Q ss_pred             CCCCchhHhhhhccHHHHHHHHHhcccCccccccCCchHHHHhcCCCCCCCCcCcccCCCCCCc--hHHHHHHHHHhhhC
Q 025189          125 PDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAW--IPTLVKGITDVATN  202 (256)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~~i~~~~~  202 (256)
                         |+-+.|.+ -...+..++.+..+|....+  ..||..-.++.+..-...  +   +.-..|  =+.|++++-...++
T Consensus       330 ---Wsq~RF~e-Ik~~l~~fL~~~~gf~es~v--~FIPiSGl~GeNL~k~~~--~---~~l~~WY~Gp~LL~~id~~~~p  398 (603)
T KOG0458|consen  330 ---WSQDRFEE-IKNKLSSFLKESCGFKESSV--KFIPISGLSGENLIKIEQ--E---NELSQWYKGPTLLSQIDSFKIP  398 (603)
T ss_pred             ---ccHHHHHH-HHHHHHHHHHHhcCcccCCc--ceEecccccCCccccccc--c---hhhhhhhcCChHHHHHhhccCC
Confidence               44344433 23457777744445554322  357764443332221110  0   111347  56788888776555


Q ss_pred             C
Q 025189          203 K  203 (256)
Q Consensus       203 ~  203 (256)
                      +
T Consensus       399 ~  399 (603)
T KOG0458|consen  399 E  399 (603)
T ss_pred             C
Confidence            5

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.00032  Score=54.33  Aligned_cols=107  Identities=12%  Similarity=0.169  Sum_probs=64.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|-+++||||++-.|.-...  +...  .|.........+.+..+.+||.-|...       +....+++.  ++..+++
T Consensus        23 lGLd~aGKTtiLyKLkl~~~--~~~i--pTvGFnvetVtykN~kfNvwdvGGqd~-------iRplWrhYy--~gtqglI   89 (180)
T KOG0071|consen   23 LGLDAAGKTTILYKLKLGQS--VTTI--PTVGFNVETVTYKNVKFNVWDVGGQDK-------IRPLWRHYY--TGTQGLI   89 (180)
T ss_pred             EecccCCceehhhHHhcCCC--cccc--cccceeEEEEEeeeeEEeeeeccCchh-------hhHHHHhhc--cCCceEE
Confidence            58899999999988765532  1111  223334455678889999999998742       222233333  6888999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCc-c-cccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQ-I-WRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~-~-~~~~ivv~Tk~D~~  123 (256)
                      ||++..+ | +.. .+.-.++-++.+.. + -.+++|..||-|+.
T Consensus        90 FV~Dsa~-~-dr~-eeAr~ELh~ii~~~em~~~~~LvlANkQDlp  131 (180)
T KOG0071|consen   90 FVVDSAD-R-DRI-EEARNELHRIINDREMRDAIILILANKQDLP  131 (180)
T ss_pred             EEEeccc-h-hhH-HHHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence            9954433 2 222 22334444444432 1 24567777999983

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=97.67  E-value=0.0002  Score=55.44  Aligned_cols=108  Identities=14%  Similarity=0.119  Sum_probs=64.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|-.++||+|++..|-++++....+    |........+++| +.+++||.-|...-.    -|.+.+-     ...|.+
T Consensus        23 lGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGqr~IR----pyWsNYy-----envd~l   89 (185)
T KOG0074|consen   23 LGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQRGIR----PYWSNYY-----ENVDGL   89 (185)
T ss_pred             EecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCccccc----hhhhhhh-----hccceE
Confidence            4778999999999999998643332    2333344566666 799999999875321    2333332     478999


Q ss_pred             EEEEeCCCCCCCHH-HHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~-~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +||++-.+..++++ ..+..+.+.+..  -...|+.+-.||-|+.
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeK--l~~vpvlIfankQdll  132 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEK--LAEVPVLIFANKQDLL  132 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhh--hhccceeehhhhhHHH
Confidence            99976544333332 222333222221  1125666666776763

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.66  E-value=6.1e-05  Score=69.61  Aligned_cols=72  Identities=14%  Similarity=0.073  Sum_probs=39.1

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh-cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .+..+.||||||...   .+......+..++. ....+-+++|++...  -...-.++++.+...      ...-+++||
T Consensus       298 ~~~DlVlIDt~G~~~---~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~------~~~~vI~TK  366 (424)
T PRK05703        298 RDCDVILIDTAGRSQ---RDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRL------PLDGLIFTK  366 (424)
T ss_pred             CCCCEEEEeCCCCCC---CCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCC------CCCEEEEec
Confidence            356789999999853   34444455555553 223345555644332  122223344433322      234688999


Q ss_pred             ccCC
Q 025189          120 AQLC  123 (256)
Q Consensus       120 ~D~~  123 (256)
                      .|..
T Consensus       367 lDet  370 (424)
T PRK05703        367 LDET  370 (424)
T ss_pred             cccc
Confidence            9974

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.65  E-value=0.00044  Score=63.08  Aligned_cols=72  Identities=15%  Similarity=0.140  Sum_probs=40.3

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC-CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~-~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .+..+.+|||||...   .+...+.++...+.... .+-+++|++.+.   ...+  +.+.+.+. ..  ....=+++||
T Consensus       253 ~~~DlVLIDTaGr~~---~~~~~l~el~~~l~~~~~~~e~~LVlsat~---~~~~--~~~~~~~~-~~--~~~~~~I~TK  321 (388)
T PRK12723        253 KDFDLVLVDTIGKSP---KDFMKLAEMKELLNACGRDAEFHLAVSSTT---KTSD--VKEIFHQF-SP--FSYKTVIFTK  321 (388)
T ss_pred             CCCCEEEEcCCCCCc---cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC---CHHH--HHHHHHHh-cC--CCCCEEEEEe
Confidence            466789999999864   34434566666653323 335667744442   1222  22223222 11  1356788999


Q ss_pred             ccCC
Q 025189          120 AQLC  123 (256)
Q Consensus       120 ~D~~  123 (256)
                      .|..
T Consensus       322 lDet  325 (388)
T PRK12723        322 LDET  325 (388)
T ss_pred             ccCC
Confidence            9975

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.64  E-value=3.9e-05  Score=70.17  Aligned_cols=72  Identities=22%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhc---CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN---KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL  117 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~---~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~  117 (256)
                      .+..+.+|||||....   +...++.+..++..   ..++-+++|++...  -.+.-.++++.. +.+     ...=+|+
T Consensus       298 ~~~D~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~--~~~~~~~~~~~f-~~~-----~~~glIl  366 (432)
T PRK12724        298 DGSELILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTS--SYHHTLTVLKAY-ESL-----NYRRILL  366 (432)
T ss_pred             CCCCEEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC--CHHHHHHHHHHh-cCC-----CCCEEEE
Confidence            3667899999998643   33444455544421   23456667744442  122223333333 222     4567889


Q ss_pred             ecccCC
Q 025189          118 THAQLC  123 (256)
Q Consensus       118 Tk~D~~  123 (256)
                      ||.|..
T Consensus       367 TKLDEt  372 (432)
T PRK12724        367 TKLDEA  372 (432)
T ss_pred             EcccCC
Confidence            999975

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.63  E-value=0.00013  Score=58.34  Aligned_cols=18  Identities=33%  Similarity=0.562  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|..|+||||+++.+++.
T Consensus         6 ~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           6 TGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EECCCCCHHHHHHHHHhc
Confidence            489999999999998875

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.61  E-value=2.9e-05  Score=69.56  Aligned_cols=57  Identities=25%  Similarity=0.347  Sum_probs=45.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN   60 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~   60 (256)
                      +|-++|||||+||+|.......+++.++.|..-+..+   -+..+.++|.||+.-....+
T Consensus       258 iG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~~~~~  314 (435)
T KOG2484|consen  258 IGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPPSIDE  314 (435)
T ss_pred             ecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee---ccCCceeccCCceeecCCCc
Confidence            6889999999999999999988998888776544332   24578999999998765443

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.58  E-value=0.00028  Score=61.30  Aligned_cols=71  Identities=14%  Similarity=0.020  Sum_probs=44.2

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +..+.++||||-..   .+...++++.+++....+|.+++|++..  .-...-..+++.+.. +     ...-+++||.|
T Consensus       154 ~~D~ViIDt~Gr~~---~~~~~l~el~~~~~~~~~~~~~LVl~a~--~~~~d~~~~~~~f~~-~-----~~~~~I~TKlD  222 (270)
T PRK06731        154 RVDYILIDTAGKNY---RASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEIITNFKD-I-----HIDGIVFTKFD  222 (270)
T ss_pred             CCCEEEEECCCCCc---CCHHHHHHHHHHHhhhCCCeEEEEEcCc--cCHHHHHHHHHHhCC-C-----CCCEEEEEeec
Confidence            56889999999853   3445555666555444677888884433  222233344444433 1     45678899999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      ..
T Consensus       223 et  224 (270)
T PRK06731        223 ET  224 (270)
T ss_pred             CC
Confidence            75

>PRK01889 GTPase RsgA; Reviewed

Probab=97.57  E-value=4.5e-05  Score=68.94  Aligned_cols=54  Identities=33%  Similarity=0.537  Sum_probs=33.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAG   57 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~   57 (256)
                      +|.+|+|||||+|+|+|.....++...       .+|......... ++  ..++||||+....
T Consensus       201 vG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~-~~--~~l~DtpG~~~~~  261 (356)
T PRK01889        201 LGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP-SG--GLLIDTPGMRELQ  261 (356)
T ss_pred             ECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec-CC--CeecCCCchhhhc
Confidence            599999999999999997554443321       122221222111 22  2588999996544

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.55  E-value=9.8e-05  Score=68.33  Aligned_cols=71  Identities=15%  Similarity=0.126  Sum_probs=42.2

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +..+.|+||||...   .+...+++++.....-.+|.+++|++...   ..   ..++.... |.+.. ...-+|+||.|
T Consensus       175 ~~DvVIIDTAGr~~---~d~~lm~El~~l~~~~~pdevlLVvda~~---gq---~av~~a~~-F~~~l-~i~gvIlTKlD  243 (437)
T PRK00771        175 KADVIIVDTAGRHA---LEEDLIEEMKEIKEAVKPDEVLLVIDATI---GQ---QAKNQAKA-FHEAV-GIGGIIITKLD  243 (437)
T ss_pred             cCCEEEEECCCccc---chHHHHHHHHHHHHHhcccceeEEEeccc---cH---HHHHHHHH-HHhcC-CCCEEEEeccc
Confidence            34789999999853   34555556655433347888999965543   22   23333322 33221 34578889998


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      ..
T Consensus       244 ~~  245 (437)
T PRK00771        244 GT  245 (437)
T ss_pred             CC
Confidence            64

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.00082  Score=58.38  Aligned_cols=128  Identities=9%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCc---------------ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERV---------------VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~---------------~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|.-..|||||..+|.+.-.               ++...-.+.|-.+.....+-+.+.+..+|.||..|       |.+
T Consensus        18 iGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD-------YvK   90 (394)
T COG0050          18 IGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-------YVK   90 (394)
T ss_pred             eccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-------HHH
Confidence            47778999999999886311               11111112344444455566788999999999753       333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHH
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTI  145 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i  145 (256)
                      ++..  .....|.-++|+..++..+-..-..++  |.+..|-   .++++.+||+|+.+  +   ++.++.-.-..++++
T Consensus        91 NMIt--gAaqmDgAILVVsA~dGpmPqTrEHiL--larqvGv---p~ivvflnK~Dmvd--d---~ellelVemEvreLL  158 (394)
T COG0050          91 NMIT--GAAQMDGAILVVAATDGPMPQTREHIL--LARQVGV---PYIVVFLNKVDMVD--D---EELLELVEMEVRELL  158 (394)
T ss_pred             HHhh--hHHhcCccEEEEEcCCCCCCcchhhhh--hhhhcCC---cEEEEEEecccccC--c---HHHHHHHHHHHHHHH
Confidence            3321  113568788887777755433322222  2233343   57888999999862  1   222222234556666


Q ss_pred             HH
Q 025189          146 RL  147 (256)
Q Consensus       146 ~~  147 (256)
                      +.
T Consensus       159 s~  160 (394)
T COG0050         159 SE  160 (394)
T ss_pred             HH
Confidence            54

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.53  E-value=0.0019  Score=52.02  Aligned_cols=71  Identities=20%  Similarity=0.165  Sum_probs=44.2

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +..+.++||||....   +...+..+..+.....++.+++|++...   .....+.+..+.+..+     -.-+|+||.|
T Consensus        82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~~~~~~~~lVv~~~~---~~~~~~~~~~~~~~~~-----~~~viltk~D  150 (173)
T cd03115          82 NFDVVIVDTAGRLQI---DENLMEELKKIKRVVKPDEVLLVVDAMT---GQDAVNQAKAFNEALG-----ITGVILTKLD  150 (173)
T ss_pred             CCCEEEEECcccchh---hHHHHHHHHHHHhhcCCCeEEEEEECCC---ChHHHHHHHHHHhhCC-----CCEEEEECCc
Confidence            566899999998532   4455555555443345899999966532   2333344454444443     3577889999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      ..
T Consensus       151 ~~  152 (173)
T cd03115         151 GD  152 (173)
T ss_pred             CC
Confidence            75

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.53  E-value=0.00079  Score=62.26  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=40.5

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +..+.|+||||...   .++...+++......-.++-+++|+  |+. ......+..+.+.+..     ...-+|+||.|
T Consensus       183 ~~DvVIIDTaGrl~---~d~~lm~eL~~i~~~v~p~evllVl--da~-~gq~av~~a~~F~~~~-----~i~giIlTKlD  251 (433)
T PRK10867        183 GYDVVIVDTAGRLH---IDEELMDELKAIKAAVNPDEILLVV--DAM-TGQDAVNTAKAFNEAL-----GLTGVILTKLD  251 (433)
T ss_pred             CCCEEEEeCCCCcc---cCHHHHHHHHHHHHhhCCCeEEEEE--ecc-cHHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence            45789999999854   2344444444433223677888884  431 2223333444444332     34577889998


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      ..
T Consensus       252 ~~  253 (433)
T PRK10867        252 GD  253 (433)
T ss_pred             Cc
Confidence            53

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.001  Score=60.68  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=74.0

Q ss_pred             CCCCCCHHHHHHHHhCCCc--ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            2 GKGGVGKSSTVNSVIGERV--VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~~~--~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      |.--.|||||+.++.|...  .+.....+.|.+...+....+...+.++|.||..+       .+..+-.  ....+|..
T Consensus         7 GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~-------~i~~mia--g~~~~d~a   77 (447)
T COG3276           7 GHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD-------FISNLLA--GLGGIDYA   77 (447)
T ss_pred             eeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH-------HHHHHHh--hhcCCceE
Confidence            4455799999999999643  22222345667777777777777899999999853       1222211  12589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      |+|++.|. -++.+..+.+..| +.||-   ++.++|+||+|..+
T Consensus        78 lLvV~~de-Gl~~qtgEhL~iL-dllgi---~~giivltk~D~~d  117 (447)
T COG3276          78 LLVVAADE-GLMAQTGEHLLIL-DLLGI---KNGIIVLTKADRVD  117 (447)
T ss_pred             EEEEeCcc-CcchhhHHHHHHH-HhcCC---CceEEEEecccccc
Confidence            99987764 4556655555444 45565   68899999999863

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.42  E-value=4.1e-05  Score=68.66  Aligned_cols=54  Identities=28%  Similarity=0.362  Sum_probs=42.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG   57 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~   57 (256)
                      ||-+++||||+||+|-...++.+.+.++.|..=++..+   -+.+.+||.||+--+.
T Consensus       313 iGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps  366 (572)
T KOG2423|consen  313 IGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPS  366 (572)
T ss_pred             ecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCC
Confidence            68899999999999999999999988887764332221   1356899999997654

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.28  E-value=0.001  Score=57.92  Aligned_cols=59  Identities=24%  Similarity=0.358  Sum_probs=37.1

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHH-HHHhhcCCcccccEEEEEec
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIK-AVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~-~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .|..+.||.|.|.+.+.   -+    |.     .-+|.+++|.-..   ..+ +.+.++ -+.++ +.      ++|+||
T Consensus       142 aG~DvIIVETVGvGQse---v~----I~-----~~aDt~~~v~~pg---~GD-~~Q~iK~GimEi-aD------i~vINK  198 (323)
T COG1703         142 AGYDVIIVETVGVGQSE---VD----IA-----NMADTFLVVMIPG---AGD-DLQGIKAGIMEI-AD------IIVINK  198 (323)
T ss_pred             cCCCEEEEEecCCCcch---hH----Hh-----hhcceEEEEecCC---CCc-HHHHHHhhhhhh-hh------eeeEec
Confidence            36778999999998653   12    22     4689999884332   223 344443 34443 32      899999


Q ss_pred             ccC
Q 025189          120 AQL  122 (256)
Q Consensus       120 ~D~  122 (256)
                      +|.
T Consensus       199 aD~  201 (323)
T COG1703         199 ADR  201 (323)
T ss_pred             cCh
Confidence            995

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.25  E-value=0.00018  Score=61.26  Aligned_cols=100  Identities=20%  Similarity=0.306  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v   79 (256)
                      +|-+.+||||+++.|.|..- ++.++..+|-.+......++|-++.+.|.||+.++...... -.+.|.   ..+.++++
T Consensus        65 vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia---vartcnli  140 (358)
T KOG1487|consen   65 VGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA---VARTCNLI  140 (358)
T ss_pred             EecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE---EeecccEE
Confidence            47789999999999999743 45556666665555566688999999999999986533221 111111   22578999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGK  107 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~  107 (256)
                      ++|.++-  . .-..+++++.-.+.||-
T Consensus       141 ~~vld~~--k-p~~hk~~ie~eleg~gi  165 (358)
T KOG1487|consen  141 FIVLDVL--K-PLSHKKIIEKELEGFGI  165 (358)
T ss_pred             EEEeecc--C-cccHHHHHHHhhhccee
Confidence            9994443  2 12456777776677773

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.23  E-value=0.00037  Score=59.68  Aligned_cols=59  Identities=20%  Similarity=0.248  Sum_probs=33.7

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHH-HHHHhhcCCcccccEEEEEec
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQII-KAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~-~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .|..+.|+.|.|.+...   -    .+.     .-+|.+++|.......    +.+.+ .-+.++       .=++|+||
T Consensus       120 aG~D~IiiETVGvGQsE---~----~I~-----~~aD~~v~v~~Pg~GD----~iQ~~KaGimEi-------aDi~vVNK  176 (266)
T PF03308_consen  120 AGFDVIIIETVGVGQSE---V----DIA-----DMADTVVLVLVPGLGD----EIQAIKAGIMEI-------ADIFVVNK  176 (266)
T ss_dssp             TT-SEEEEEEESSSTHH---H----HHH-----TTSSEEEEEEESSTCC----CCCTB-TTHHHH--------SEEEEE-
T ss_pred             cCCCEEEEeCCCCCccH---H----HHH-----HhcCeEEEEecCCCcc----HHHHHhhhhhhh-------ccEEEEeC
Confidence            47788999999998532   1    222     4689999996665422    11222 112233       23899999


Q ss_pred             ccC
Q 025189          120 AQL  122 (256)
Q Consensus       120 ~D~  122 (256)
                      +|.
T Consensus       177 aD~  179 (266)
T PF03308_consen  177 ADR  179 (266)
T ss_dssp             -SH
T ss_pred             CCh
Confidence            995

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.0029  Score=60.43  Aligned_cols=108  Identities=16%  Similarity=0.206  Sum_probs=60.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-------CC---------CCcceeEEEEe-----eeCCeEEEEEeCCCCCCCCcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS-------FQ---------SEALRPVMVSR-----SKGGFTLNIIDTPGLVEAGYV   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~-------~~---------~~t~~~~~~~~-----~~~g~~v~liDTPG~~~~~~~   59 (256)
                      +|.=++|||+|+..|.++.....+.       +.         +++-+....+.     +...+-++++||||.-+.  +
T Consensus       134 ~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF--~  211 (971)
T KOG0468|consen  134 VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF--S  211 (971)
T ss_pred             eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccc--h
Confidence            4777899999999998875321110       00         01111110111     111234689999998743  3


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++ ....+      .-.|++++|+++-.. +.-+..++++...+.-     .++++|+||.|..
T Consensus       212 DE-~ta~l------~~sDgvVlvvDv~EG-VmlntEr~ikhaiq~~-----~~i~vviNKiDRL  262 (971)
T KOG0468|consen  212 DE-TTASL------RLSDGVVLVVDVAEG-VMLNTERIIKHAIQNR-----LPIVVVINKVDRL  262 (971)
T ss_pred             HH-HHHHh------hhcceEEEEEEcccC-ceeeHHHHHHHHHhcc-----CcEEEEEehhHHH
Confidence            33 33334      368999999666542 3333344444333321     7999999999963

>TIGR00959 ffh signal recognition particle protein

Probab=97.20  E-value=0.0028  Score=58.59  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=42.1

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.|+||||...   .+.....++..+...-.+|-+++|++..   .........+.+.+..     ...=+|+||.
T Consensus       181 ~~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v-----~i~giIlTKl  249 (428)
T TIGR00959       181 NGFDVVIVDTAGRLQ---IDEELMEELAAIKEILNPDEILLVVDAM---TGQDAVNTAKTFNERL-----GLTGVVLTKL  249 (428)
T ss_pred             cCCCEEEEeCCCccc---cCHHHHHHHHHHHHhhCCceEEEEEecc---chHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence            355789999999854   3344455554443334678889995432   2233334444444333     3456778998


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       250 D~~  252 (428)
T TIGR00959       250 DGD  252 (428)
T ss_pred             cCc
Confidence            853

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.18  E-value=0.0013  Score=67.08  Aligned_cols=120  Identities=20%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC--cccccCCCCCcc-eeEEEEeeeCCeEEEEEeCCCCCCCCc----CcHH----HHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGER--VVTVNSFQSEAL-RPVMVSRSKGGFTLNIIDTPGLVEAGY----VNYQ----ALELIKG   69 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~--~~~~~~~~~~t~-~~~~~~~~~~g~~v~liDTPG~~~~~~----~~~~----~~~~i~~   69 (256)
                      ||+.|+||||++..- |..  .+......+... .+..|.. +-+..-++|||.|-.-.-.    .+..    .+..+++
T Consensus       131 iG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk  208 (1188)
T COG3523         131 IGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKK  208 (1188)
T ss_pred             ecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHH
Confidence            799999999998542 221  111111111100 0122222 2233457999999876432    1221    2222222


Q ss_pred             hhhcCCCcEEEEEEeCCCCC-CCHHHH-HH-------HHHHHhhcCCcccccEEEEEecccCCC
Q 025189           70 FLLNKTIDVLLYADRLDAYR-VDDLDR-QI-------IKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        70 ~l~~~~~d~vL~v~~~d~~r-~~~~~~-~~-------~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      .=..+.+|.|++.+++.+-- .+..+. ..       +++|.+.++-  ..|++|++||+|+.+
T Consensus       209 ~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~--~~PVYl~lTk~Dll~  270 (1188)
T COG3523         209 YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA--RLPVYLVLTKADLLP  270 (1188)
T ss_pred             hccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc--CCceEEEEecccccc
Confidence            22235799999998876422 233333 11       3344445543  489999999999863

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.00039  Score=55.73  Aligned_cols=110  Identities=10%  Similarity=0.084  Sum_probs=64.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC-----cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGER-----VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (256)
                      +|.-++||+|++-++-..-     ...++.. .+|......+..+++..+.+||.-|.....    ...+.+-     ..
T Consensus        23 lgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQe~lr----Slw~~yY-----~~   92 (197)
T KOG0076|consen   23 LGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQESLR----SLWKKYY-----WL   92 (197)
T ss_pred             eccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCChHHHH----HHHHHHH-----HH
Confidence            4888999999997764421     1112222 123334445566778899999999975322    2222222     37


Q ss_pred             CcEEEEEEeCCC-CCCCHHHHHHHHHH-HhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDA-YRVDDLDRQIIKAV-TGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~-~r~~~~~~~~~~~l-~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++|+++..+ .|+.+ ....++.+ .+..-++  .|+++.+||-|+.
T Consensus        93 ~H~ii~viDa~~~eR~~~-~~t~~~~v~~~E~leg--~p~L~lankqd~q  139 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEE-SKTAFEKVVENEKLEG--APVLVLANKQDLQ  139 (197)
T ss_pred             hceeEEeecCCCHHHHHH-HHHHHHHHHHHHHhcC--Cchhhhcchhhhh
Confidence            899999976665 33433 33333333 2222222  6899999999984

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.15  E-value=0.00053  Score=64.13  Aligned_cols=18  Identities=39%  Similarity=0.671  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||++..|.+.
T Consensus       262 vGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        262 MGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             ECCCCccHHHHHHHHHHH
Confidence            699999999999988863

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.14  E-value=0.0036  Score=57.19  Aligned_cols=74  Identities=9%  Similarity=0.109  Sum_probs=46.7

Q ss_pred             EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccE
Q 025189           34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS  113 (256)
Q Consensus        34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~  113 (256)
                      ..-+..|++..+++.||||..|.+  .+.|.-.       .-.|..+.|++.-. -+.....++++. .++-+    .|+
T Consensus        72 SVMqF~Y~~~~iNLLDTPGHeDFS--EDTYRtL-------tAvDsAvMVIDaAK-GiE~qT~KLfeV-crlR~----iPI  136 (528)
T COG4108          72 SVMQFDYADCLVNLLDTPGHEDFS--EDTYRTL-------TAVDSAVMVIDAAK-GIEPQTLKLFEV-CRLRD----IPI  136 (528)
T ss_pred             eEEEeccCCeEEeccCCCCccccc--hhHHHHH-------HhhheeeEEEeccc-CccHHHHHHHHH-HhhcC----Cce
Confidence            345667899999999999998754  3333322       25788899944331 244444444432 22222    688


Q ss_pred             EEEEecccC
Q 025189          114 LLVLTHAQL  122 (256)
Q Consensus       114 ivv~Tk~D~  122 (256)
                      +-..||.|.
T Consensus       137 ~TFiNKlDR  145 (528)
T COG4108         137 FTFINKLDR  145 (528)
T ss_pred             EEEeecccc
Confidence            888888886

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.10  E-value=0.0057  Score=49.43  Aligned_cols=65  Identities=18%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      +...+.|+|||+....     .....+      ..+|.+++++..+.... ..-..+++.+.+. +    .+..+|+|++
T Consensus        91 ~~~d~viiDtpp~~~~-----~~~~~l------~~aD~vliv~~~~~~~~-~~~~~~~~~l~~~-~----~~~~vV~N~~  153 (179)
T cd03110          91 EGAELIIIDGPPGIGC-----PVIASL------TGADAALLVTEPTPSGL-HDLERAVELVRHF-G----IPVGVVINKY  153 (179)
T ss_pred             cCCCEEEEECcCCCcH-----HHHHHH------HcCCEEEEEecCCcccH-HHHHHHHHHHHHc-C----CCEEEEEeCC
Confidence            4567899999965421     222222      47899999977664222 2234455555443 2    4578999999


Q ss_pred             cC
Q 025189          121 QL  122 (256)
Q Consensus       121 D~  122 (256)
                      |.
T Consensus       154 ~~  155 (179)
T cd03110         154 DL  155 (179)
T ss_pred             CC
Confidence            86

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=96.99  E-value=0.0027  Score=58.55  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=58.2

Q ss_pred             CCCHHHHHHHHhCCCcccc--------------cCCCCCcceeEEEEeee-----CCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            5 GVGKSSTVNSVIGERVVTV--------------NSFQSEALRPVMVSRSK-----GGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         5 G~GKSSliN~l~g~~~~~~--------------~~~~~~t~~~~~~~~~~-----~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      -.|||||...|+.......              ..-.+.|-+.+.....+     +...+.+|||||.-|....-.   +
T Consensus        19 DHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVS---R   95 (603)
T COG0481          19 DHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVS---R   95 (603)
T ss_pred             cCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEeh---h
Confidence            4799999999986422110              01113344444433333     235678999999988654322   2


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .++      -+...|+|++.+.    .-+.+.+.-.--.+..+  --++-|+||.|+.
T Consensus        96 SLA------ACEGalLvVDAsQ----GveAQTlAN~YlAle~~--LeIiPViNKIDLP  141 (603)
T COG0481          96 SLA------ACEGALLVVDASQ----GVEAQTLANVYLALENN--LEIIPVLNKIDLP  141 (603)
T ss_pred             hHh------hCCCcEEEEECcc----chHHHHHHHHHHHHHcC--cEEEEeeecccCC
Confidence            333      4556677744442    22333333333333333  4689999999995

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.97  E-value=0.00035  Score=56.86  Aligned_cols=46  Identities=20%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEe
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIID   49 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liD   49 (256)
                      .|+|||||||++..|+.......| .+.||+.+.  .++.+|+...+++
T Consensus        10 sgPSG~GKsTl~k~L~~~~~l~~S-VS~TTR~pR--~gEv~G~dY~Fvs   55 (191)
T COG0194          10 SGPSGVGKSTLVKALLEDDKLRFS-VSATTRKPR--PGEVDGVDYFFVT   55 (191)
T ss_pred             ECCCCCCHHHHHHHHHhhcCeEEE-EEeccCCCC--CCCcCCceeEeCC
Confidence            399999999999999988632222 334555443  3567777665544

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.97  E-value=0.011  Score=45.99  Aligned_cols=97  Identities=21%  Similarity=0.263  Sum_probs=53.2

Q ss_pred             CCCCCCHHHHHHHHhCC------CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189            2 GKGGVGKSSTVNSVIGE------RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT   75 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~------~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (256)
                      |+.|+|||++--.+...      .+..+..-...+        .+ ...+.|+|||+..+     ......+      ..
T Consensus         7 ~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~--------~~-~yd~VIiD~p~~~~-----~~~~~~l------~~   66 (139)
T cd02038           7 GKGGVGKTNISANLALALAKLGKRVLLLDADLGLA--------NL-DYDYIIIDTGAGIS-----DNVLDFF------LA   66 (139)
T ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC--------CC-CCCEEEEECCCCCC-----HHHHHHH------Hh
Confidence            68999999996555432      111111100000        01 15679999998532     2222233      36


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      +|.+++++..+...+ ..-..+++.+.+..+   ..++.+|+|+++.
T Consensus        67 aD~vviv~~~~~~s~-~~~~~~l~~l~~~~~---~~~~~lVvN~~~~  109 (139)
T cd02038          67 ADEVIVVTTPEPTSI-TDAYALIKKLAKQLR---VLNFRVVVNRAES  109 (139)
T ss_pred             CCeEEEEcCCChhHH-HHHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence            899999965553211 112445566655432   2578899999864

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.0026  Score=51.74  Aligned_cols=110  Identities=14%  Similarity=0.171  Sum_probs=66.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcc---eeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL---RPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~---~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|..|.||+|++++.+-......  +..++.   .+.......+...+.+|||.|..-.+...+.+.  |       ...
T Consensus        16 vGdgg~gKtt~vkr~ltgeFe~~--y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy--I-------~~q   84 (216)
T KOG0096|consen   16 VGDGGTGKTTFVKRHLTGEFEKT--YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY--I-------QGQ   84 (216)
T ss_pred             ecCCcccccchhhhhhcccceec--ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE--E-------ecc
Confidence            59999999999999876543221  222211   111122222337889999999876443322211  1       233


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +.++++++.+.-...+..++-+.+.+..+.   .|+++..||.|...
T Consensus        85 cAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~  128 (216)
T KOG0096|consen   85 CAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKA  128 (216)
T ss_pred             eeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccc
Confidence            445555566522445666777888888765   69999999999753

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=96.86  E-value=0.002  Score=62.14  Aligned_cols=104  Identities=14%  Similarity=0.138  Sum_probs=63.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEE--------------------EeeeCCeEEEEEeCCCCCCCCcCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV--------------------SRSKGGFTLNIIDTPGLVEAGYVN   60 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~--------------------~~~~~g~~v~liDTPG~~~~~~~~   60 (256)
                      +|.-.+|||-|+..|.|.++ ..+...+.|...-..                    ...+.|  +.+|||||....    
T Consensus       481 lGHVDTGKTKlld~ir~tNV-qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg--~lvIdtpghEsF----  553 (1064)
T KOG1144|consen  481 LGHVDTGKTKLLDKIRGTNV-QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPG--LLVIDTPGHESF----  553 (1064)
T ss_pred             eecccccchHHHHHhhcccc-ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCe--eEEecCCCchhh----
Confidence            57778999999999999766 333333333322110                    112223  489999995432    


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        61 ~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                          ..+++.- ..-+|+.++|+++-. .+......-+..|+...     -|+||.+||.|.
T Consensus       554 ----tnlRsrg-sslC~~aIlvvdImh-GlepqtiESi~lLR~rk-----tpFivALNKiDR  604 (1064)
T KOG1144|consen  554 ----TNLRSRG-SSLCDLAILVVDIMH-GLEPQTIESINLLRMRK-----TPFIVALNKIDR  604 (1064)
T ss_pred             ----hhhhhcc-ccccceEEEEeehhc-cCCcchhHHHHHHHhcC-----CCeEEeehhhhh
Confidence                2333211 134899999977653 35555555555555442     799999999985

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.85  E-value=0.015  Score=42.98  Aligned_cols=93  Identities=18%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             CCCCCCHHHHHHHHhCC-------CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcC
Q 025189            2 GKGGVGKSSTVNSVIGE-------RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK   74 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~-------~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~   74 (256)
                      ++.|+||||+.-.|...       ++..+..-..            .+-.+.|+|||+..+.     .....+      .
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------------~~~D~IIiDtpp~~~~-----~~~~~l------~   63 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------------FGDDYVVVDLGRSLDE-----VSLAAL------D   63 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------------CCCCEEEEeCCCCcCH-----HHHHHH------H
Confidence            58999999987655432       1111111000            1116799999996532     122222      3


Q ss_pred             CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189           75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .+|.++++...+...+ ..-..+++.+.+.-.. -..++.+|+|+
T Consensus        64 ~aD~vlvvv~~~~~s~-~~~~~~~~~l~~~~~~-~~~~~~lVvNr  106 (106)
T cd03111          64 QADRVFLVTQQDLPSI-RNAKRLLELLRVLDYS-LPAKIELVLNR  106 (106)
T ss_pred             HcCeEEEEecCChHHH-HHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence            6799999966553221 2233455555544222 12467777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.81  E-value=0.0038  Score=58.69  Aligned_cols=101  Identities=19%  Similarity=0.263  Sum_probs=59.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      ||++|+||||||.+|..+-. ...+...+.   ..  ......+.+++...|.  |-.    ..+ .++     .=+|+|
T Consensus        75 vGPpGtGKsTLirSlVrr~tk~ti~~i~GP---iT--vvsgK~RRiTflEcp~--Dl~----~mi-Dva-----KIaDLV  137 (1077)
T COG5192          75 VGPPGTGKSTLIRSLVRRFTKQTIDEIRGP---IT--VVSGKTRRITFLECPS--DLH----QMI-DVA-----KIADLV  137 (1077)
T ss_pred             ecCCCCChhHHHHHHHHHHHHhhhhccCCc---eE--EeecceeEEEEEeChH--HHH----HHH-hHH-----Hhhhee
Confidence            69999999999999986421 111221111   11  1122346789998882  211    111 122     347999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |+.++.+- .|.-+...++..+... |   +.+++-|+||.|++
T Consensus       138 lLlIdgnf-GfEMETmEFLnil~~H-G---mPrvlgV~ThlDlf  176 (1077)
T COG5192         138 LLLIDGNF-GFEMETMEFLNILISH-G---MPRVLGVVTHLDLF  176 (1077)
T ss_pred             EEEecccc-CceehHHHHHHHHhhc-C---CCceEEEEeecccc
Confidence            99944332 3544555666555544 3   36899999999986

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=96.80  E-value=0.004  Score=40.73  Aligned_cols=44  Identities=14%  Similarity=0.229  Sum_probs=29.6

Q ss_pred             CCcEEEEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           75 TIDVLLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      =.++|||+++++... .+ ++...+++.++..|++   +|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence            468999998888655 32 3445688999999976   89999999997

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.0053  Score=55.30  Aligned_cols=43  Identities=19%  Similarity=0.195  Sum_probs=31.3

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLD   86 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d   86 (256)
                      ++..+.|+||.|-.   ..+....++++++...-.||.+|+|.+.+
T Consensus       182 e~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai~Pd~vi~VmDas  224 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRH---KQEASLFEEMKQVSKAIKPDEIIFVMDAS  224 (483)
T ss_pred             cCCcEEEEeCCCch---hhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence            46789999999975   34455666666665556899999995443

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.59  E-value=0.0011  Score=56.22  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=17.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|+||||||||+|.+.|-..
T Consensus        35 lGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          35 LGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999543

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.54  E-value=0.057  Score=48.19  Aligned_cols=107  Identities=16%  Similarity=0.254  Sum_probs=56.9

Q ss_pred             CCCCCCCHHHHHHHHhC--CCcccccCCCCCcceeEE-------------EEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIG--ERVVTVNSFQSEALRPVM-------------VSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g--~~~~~~~~~~~~t~~~~~-------------~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|.-.+||+||..+|..  ...|.-...+++++....             .-.+.+..+++++|.||...          
T Consensus        13 LGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas----------   82 (522)
T KOG0461|consen   13 LGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS----------   82 (522)
T ss_pred             EeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----------
Confidence            46778999999998864  222211111122211111             00122345679999999631          


Q ss_pred             HHHHhh-hcCCCcEEEEEEeCCCCCCC-HHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           66 LIKGFL-LNKTIDVLLYADRLDAYRVD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        66 ~i~~~l-~~~~~d~vL~v~~~d~~r~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      .|+..+ -..=+|+.++|+++....-+ ..+--++.       +-.-++.+||+||.|..+
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig-------~~~c~klvvvinkid~lp  136 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIG-------ELLCKKLVVVINKIDVLP  136 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcccccccchhhhhh-------hhhccceEEEEecccccc
Confidence            222222 11347899999777643222 22322322       222367899999998763

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.47  E-value=0.032  Score=43.65  Aligned_cols=19  Identities=37%  Similarity=0.719  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          32 VGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            5999999999999999974

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.45  E-value=0.036  Score=44.30  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=37.0

Q ss_pred             EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      .+.|+|||+-.+.     .....+      ..+|.+++++..+...+. .-..+++.+.+. +   .....+|+|+++.
T Consensus        64 d~viiD~p~~~~~-----~~~~~l------~~ad~viiv~~~~~~s~~-~~~~~~~~~~~~-~---~~~~~iv~N~~~~  126 (179)
T cd02036          64 DYILIDSPAGIER-----GFITAI------APADEALLVTTPEISSLR-DADRVKGLLEAL-G---IKVVGVIVNRVRP  126 (179)
T ss_pred             CEEEEECCCCCcH-----HHHHHH------HhCCcEEEEeCCCcchHH-HHHHHHHHHHHc-C---CceEEEEEeCCcc
Confidence            6899999985432     222222      368889999666542222 222445555442 1   1457789999875

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.43  E-value=0.0062  Score=53.95  Aligned_cols=76  Identities=14%  Similarity=0.084  Sum_probs=43.0

Q ss_pred             eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEE
Q 025189           40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV  116 (256)
Q Consensus        40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv  116 (256)
                      -.|..+.++||.|--....---.-++.|.+-+.   ...+|-+|++++...   ..+-..-.+.+.+..     .-.-++
T Consensus       219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt---Gqnal~QAk~F~eav-----~l~GiI  290 (340)
T COG0552         219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT---GQNALSQAKIFNEAV-----GLDGII  290 (340)
T ss_pred             HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc---ChhHHHHHHHHHHhc-----CCceEE
Confidence            347788999999987653222223334444331   124677888833332   233333344444554     345788


Q ss_pred             EecccCC
Q 025189          117 LTHAQLC  123 (256)
Q Consensus       117 ~Tk~D~~  123 (256)
                      +||.|..
T Consensus       291 lTKlDgt  297 (340)
T COG0552         291 LTKLDGT  297 (340)
T ss_pred             EEecccC
Confidence            9999964

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.42  E-value=0.0024  Score=52.45  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=27.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNII   48 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~li   48 (256)
                      +|++||||||+++.|+..........+.||+.+.  .++.+|+...++
T Consensus        10 ~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r--~gE~~G~dY~fv   55 (186)
T PRK14737         10 SSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR--PGDEEGKTYFFL   55 (186)
T ss_pred             ECCCCCCHHHHHHHHHhcCCccccccCccCCCCC--CCCCCCceeEeC
Confidence            5999999999999999864222222333444332  234555554444

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.41  E-value=0.002  Score=43.05  Aligned_cols=16  Identities=31%  Similarity=0.623  Sum_probs=14.1

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      .|++|+||||++.++.
T Consensus        29 ~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   29 TGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998865

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.39  E-value=0.024  Score=46.07  Aligned_cols=19  Identities=32%  Similarity=0.658  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          31 VGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            5999999999999999964

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.36  E-value=0.003  Score=49.09  Aligned_cols=51  Identities=20%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeEEEEeeeCCeEEEEEeCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT-VNSFQSEALRPVMVSRSKGGFTLNIIDTPGL   53 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~-~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~   53 (256)
                      +|+||+||||+++.|.+.-... ......+|+.+.  ..+.+|....++|...+
T Consensus         5 ~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~--~~e~~g~~~~~v~~~~~   56 (137)
T cd00071           5 SGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPR--PGEVDGVDYHFVSKEEF   56 (137)
T ss_pred             ECCCCCCHHHHHHHHHhcCCccceecccccccCCC--CCccCCceeEEeCHHHH
Confidence            5999999999999999862211 112223444332  22456666677765443

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=96.36  E-value=0.0012  Score=60.90  Aligned_cols=83  Identities=20%  Similarity=0.324  Sum_probs=45.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEE----EEeeeCC--eEEEEE-----eCCCCCCCCcCcHHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM----VSRSKGG--FTLNII-----DTPGLVEAGYVNYQALELIKG   69 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~----~~~~~~g--~~v~li-----DTPG~~~~~~~~~~~~~~i~~   69 (256)
                      +|.+|+|||||+|.|.+...+.+..+.........    ......+  ..-.+|     |+||......   .....+.+
T Consensus       163 ~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~---~~a~~iAE  239 (434)
T PRK08472        163 FAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGA---FCAMSVAE  239 (434)
T ss_pred             ECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHH---HHHHHHHH
Confidence            58999999999999997543222221111110000    0011122  123566     7888754321   12335666


Q ss_pred             hhhcCCCcEEEEEEeCC
Q 025189           70 FLLNKTIDVLLYADRLD   86 (256)
Q Consensus        70 ~l~~~~~d~vL~v~~~d   86 (256)
                      ++...+-|++|++.+++
T Consensus       240 yFrd~G~~Vll~~DslT  256 (434)
T PRK08472        240 YFKNQGLDVLFIMDSVT  256 (434)
T ss_pred             HHHHcCCCEEEecccch
Confidence            66667899999886655

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.34  E-value=0.014  Score=49.78  Aligned_cols=89  Identities=24%  Similarity=0.303  Sum_probs=48.4

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEE
Q 025189            2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLY   81 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~   81 (256)
                      |..|+||||++.+++.+-. .      .            |  +.+|..+.-.-.  .-.+.++.+    .......|||
T Consensus        59 G~rGtGKSSlVkall~~y~-~------~------------G--LRlIev~k~~L~--~l~~l~~~l----~~~~~kFIlf  111 (249)
T PF05673_consen   59 GARGTGKSSLVKALLNEYA-D------Q------------G--LRLIEVSKEDLG--DLPELLDLL----RDRPYKFILF  111 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHh-h------c------------C--ceEEEECHHHhc--cHHHHHHHH----hcCCCCEEEE
Confidence            8999999999999997521 0      0            1  344444432100  112333333    3356788899


Q ss_pred             EEeCCCCCCCHHH--HHHHHHHHhhcCCcccccEEEEEecc
Q 025189           82 ADRLDAYRVDDLD--RQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        82 v~~~d~~r~~~~~--~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      |.++   .|.+.|  -..++.+.+.--+..-.++++..|=-
T Consensus       112 ~DDL---sFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN  149 (249)
T PF05673_consen  112 CDDL---SFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN  149 (249)
T ss_pred             ecCC---CCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence            9544   444433  44445444432233346677777643

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.31  E-value=0.0019  Score=52.24  Aligned_cols=50  Identities=22%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPG   52 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG   52 (256)
                      +|++|+||||+++.|.+...........+|+.+.  ..+.+|..+.++++..
T Consensus         7 ~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~--~g~~~~~~~~~~~~~~   56 (180)
T TIGR03263         7 SGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR--PGEVDGVDYFFVSKEE   56 (180)
T ss_pred             ECCCCCCHHHHHHHHHccCccccccccceeeCCC--CCCcCCcEEEEecHHH
Confidence            5999999999999999864322222122333222  2234555555555444

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.28  E-value=0.042  Score=38.68  Aligned_cols=65  Identities=23%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEE
Q 025189            2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLY   81 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~   81 (256)
                      |..|+||||+.+.+...-. . ..     .+.    .-++  .+.++|+||..+.....  .....      ...|.+++
T Consensus         6 g~~G~Gktt~~~~l~~~l~-~-~g-----~~v----~~~~--d~iivD~~~~~~~~~~~--~~~~~------~~~~~vi~   64 (99)
T cd01983           6 GKGGVGKTTLAANLAAALA-K-RG-----KRV----LLID--DYVLIDTPPGLGLLVLL--CLLAL------LAADLVII   64 (99)
T ss_pred             CCCCCCHHHHHHHHHHHHH-H-CC-----CeE----EEEC--CEEEEeCCCCccchhhh--hhhhh------hhCCEEEE
Confidence            7789999999988876421 1 00     001    1111  66999999986543210  01111      47888888


Q ss_pred             EEeCCC
Q 025189           82 ADRLDA   87 (256)
Q Consensus        82 v~~~d~   87 (256)
                      +...+.
T Consensus        65 v~~~~~   70 (99)
T cd01983          65 VTTPEA   70 (99)
T ss_pred             ecCCch
Confidence            855553

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd00066 G-alpha G protein alpha subunit

Probab=96.28  E-value=0.015  Score=51.76  Aligned_cols=81  Identities=10%  Similarity=0.176  Sum_probs=49.8

Q ss_pred             EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC-------CHHHHHHHHHHHhhcC
Q 025189           34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-------DDLDRQIIKAVTGTFG  106 (256)
Q Consensus        34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~-------~~~~~~~~~~l~~~~g  106 (256)
                      ......+++..+.+||+.|....   ...+.    +|.  .++++|+||+++++...       ..--.+.+..+...+.
T Consensus       152 ~~~~f~~~~~~~~~~DvgGq~~~---R~kW~----~~f--~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~  222 (317)
T cd00066         152 VETKFTIKNLKFRMFDVGGQRSE---RKKWI----HCF--EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN  222 (317)
T ss_pred             eEEEEEecceEEEEECCCCCccc---chhHH----HHh--CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence            34455678889999999997532   22222    222  58999999988875310       1122233334444433


Q ss_pred             Ccc--cccEEEEEecccCC
Q 025189          107 KQI--WRKSLLVLTHAQLC  123 (256)
Q Consensus       107 ~~~--~~~~ivv~Tk~D~~  123 (256)
                      ...  ..|+++++||.|+.
T Consensus       223 ~~~~~~~pill~~NK~D~f  241 (317)
T cd00066         223 SRWFANTSIILFLNKKDLF  241 (317)
T ss_pred             CccccCCCEEEEccChHHH
Confidence            221  37999999999974

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.24  E-value=0.012  Score=56.94  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=57.5

Q ss_pred             CCCHHHHHHHHhCCCcccccCCC---------------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189            5 GVGKSSTVNSVIGERVVTVNSFQ---------------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG   69 (256)
Q Consensus         5 G~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~   69 (256)
                      ..|||||+.+|+..+....+...               +.|.+....+....+.-+++||+||.-|....-..   ..  
T Consensus        19 dhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevss---as--   93 (887)
T KOG0467|consen   19 DHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSS---AS--   93 (887)
T ss_pred             cCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhh---hh--
Confidence            47999999999876432211111               12223333334456778899999999876422111   11  


Q ss_pred             hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           70 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        70 ~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                          .=.|..|+.+++.. .....   ....+++..-+.  ...++|+||.|.
T Consensus        94 ----~l~d~alvlvdvve-gv~~q---t~~vlrq~~~~~--~~~~lvinkidr  136 (887)
T KOG0467|consen   94 ----RLSDGALVLVDVVE-GVCSQ---TYAVLRQAWIEG--LKPILVINKIDR  136 (887)
T ss_pred             ----hhcCCcEEEEeecc-ccchh---HHHHHHHHHHcc--CceEEEEehhhh
Confidence                23455555544443 23333   333344443333  578999999994

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=96.24  E-value=0.028  Score=53.08  Aligned_cols=107  Identities=18%  Similarity=0.137  Sum_probs=58.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|+-++|||.++++++|+.... +....+......-.....  ...+.+-|.+-. +.+.....          ...+|+
T Consensus       431 ~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k----------e~~cDv  498 (625)
T KOG1707|consen  431 VGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK----------EAACDV  498 (625)
T ss_pred             EcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc----------cceeee
Confidence            5999999999999999986544 222221111111111222  234455555543 22221110          026899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +.++++.+..+..    ..+..+.+.+-..-..|+++|.+|+|+.
T Consensus       499 ~~~~YDsS~p~sf----~~~a~v~~~~~~~~~~Pc~~va~K~dlD  539 (625)
T KOG1707|consen  499 ACLVYDSSNPRSF----EYLAEVYNKYFDLYKIPCLMVATKADLD  539 (625)
T ss_pred             EEEecccCCchHH----HHHHHHHHHhhhccCCceEEEeeccccc
Confidence            9999877743322    2222222222222347999999999984

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.22  E-value=0.019  Score=43.32  Aligned_cols=98  Identities=14%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc--CcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY--VNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~--~~~~~~~~i~~~l~~~~~d~   78 (256)
                      .|++|+|||+++..+...-                      +..+.-+|.+-+.+...  ........+.+.-. ..-..
T Consensus         4 ~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~   60 (132)
T PF00004_consen    4 HGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKK-SAKPC   60 (132)
T ss_dssp             ESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHH-TSTSE
T ss_pred             ECcCCCCeeHHHHHHHhhc----------------------ccccccccccccccccccccccccccccccccc-cccce
Confidence            4999999999999998752                      12234455555542211  11122222222111 12258


Q ss_pred             EEEEEeCCCCC------CCHHHHHHHHHHHhhcCCccc--ccEEEEEeccc
Q 025189           79 LLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIW--RKSLLVLTHAQ  121 (256)
Q Consensus        79 vL~v~~~d~~r------~~~~~~~~~~~l~~~~g~~~~--~~~ivv~Tk~D  121 (256)
                      ||++..++..-      ........+..+...+.....  .++++++|-.+
T Consensus        61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~  111 (132)
T PF00004_consen   61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS  111 (132)
T ss_dssp             EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred             eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence            88887776311      112234555555555443221  35677776554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.20  E-value=0.01  Score=54.30  Aligned_cols=72  Identities=19%  Similarity=0.214  Sum_probs=45.4

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.||||.|-.   ..+++.+++++..-..-.||-+|+|  +|+ -....-....+.+.+..     .-+=||+||.
T Consensus       181 ~~~DvvIvDTAGRl---~ide~Lm~El~~Ik~~~~P~E~llV--vDa-m~GQdA~~~A~aF~e~l-----~itGvIlTKl  249 (451)
T COG0541         181 EGYDVVIVDTAGRL---HIDEELMDELKEIKEVINPDETLLV--VDA-MIGQDAVNTAKAFNEAL-----GITGVILTKL  249 (451)
T ss_pred             cCCCEEEEeCCCcc---cccHHHHHHHHHHHhhcCCCeEEEE--Eec-ccchHHHHHHHHHhhhc-----CCceEEEEcc
Confidence            35678999999975   3466666666654344589999999  453 12233344555555544     3456778888


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       250 DGd  252 (451)
T COG0541         250 DGD  252 (451)
T ss_pred             cCC
Confidence            753

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.14  E-value=0.043  Score=44.13  Aligned_cols=19  Identities=26%  Similarity=0.649  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          32 LGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.09  E-value=0.0032  Score=53.08  Aligned_cols=20  Identities=35%  Similarity=0.474  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|+||||||||+|.|-|-..
T Consensus        37 ~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          37 VGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             ECCCCCCHHHHHHHHhcccC
Confidence            69999999999999987543

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.09  E-value=0.0028  Score=61.52  Aligned_cols=73  Identities=14%  Similarity=0.221  Sum_probs=39.5

Q ss_pred             EEEEEeCCCCCCCCc--Cc----HHHHHHHHHhhhcCCCcEEEEE-EeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEE
Q 025189           44 TLNIIDTPGLVEAGY--VN----YQALELIKGFLLNKTIDVLLYA-DRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV  116 (256)
Q Consensus        44 ~v~liDTPG~~~~~~--~~----~~~~~~i~~~l~~~~~d~vL~v-~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv  116 (256)
                      +++++|+||+.....  ..    .++...+..++  ...+.+++. .+.+. .  -..-..++...+.=+..  .+++-|
T Consensus       133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi--~~~~~iILav~~an~-d--~ats~alkiarevDp~g--~RTigv  205 (657)
T KOG0446|consen  133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYI--EKPNRIILAVTPANS-D--IATSPALVVAREVDPGG--SRTLEV  205 (657)
T ss_pred             hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhc--cccchhhhhccchhh-h--hhcCHHHHHHHhhCCCc--cchhHH
Confidence            468999999987422  22    23444444444  455666554 33331 1  12223333333432222  789999


Q ss_pred             EecccCC
Q 025189          117 LTHAQLC  123 (256)
Q Consensus       117 ~Tk~D~~  123 (256)
                      +||.|+.
T Consensus       206 itK~Dlm  212 (657)
T KOG0446|consen  206 ITKFDFM  212 (657)
T ss_pred             hhhHHhh
Confidence            9999875

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.06  E-value=0.0031  Score=51.39  Aligned_cols=19  Identities=37%  Similarity=0.649  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|+||+|||||+|.+.|-.
T Consensus        31 ~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          31 LGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             ECCCCccHHHHHHHHHhcc
Confidence            6999999999999999953

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=95.93  E-value=0.0076  Score=52.12  Aligned_cols=56  Identities=21%  Similarity=0.246  Sum_probs=38.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccC-CCCCcceeEEEEe---eeCCeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNS-FQSEALRPVMVSR---SKGGFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~-~~~~t~~~~~~~~---~~~g~~v~liDTPG~~~~   56 (256)
                      +|+..+|||.|+|.|++.. .+.++. ..++|...-....   ..++..+.++||.|+++.
T Consensus        27 ~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~   87 (260)
T PF02263_consen   27 VGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV   87 (260)
T ss_dssp             EEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred             ecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence            4889999999999999853 344554 3456654433221   335678999999999984

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.91  E-value=0.0036  Score=48.09  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=18.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|++|+|||||++.|.|...
T Consensus        17 ~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   17 VGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EESTTSSHHHHHHHHTTSSH
T ss_pred             EccCCCccccceeeeccccc
Confidence            59999999999999999753

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.88  E-value=0.0052  Score=50.76  Aligned_cols=19  Identities=32%  Similarity=0.581  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|+||+||||+++.|.+..
T Consensus        11 ~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300         11 SGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            5999999999999999863

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.87  E-value=0.0056  Score=50.97  Aligned_cols=18  Identities=28%  Similarity=0.492  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||+++.|...
T Consensus        19 ~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         19 SGPSGVGKDAVLARMRER   36 (206)
T ss_pred             ECcCCCCHHHHHHHHHhc
Confidence            599999999999999764

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.86  E-value=0.0089  Score=50.71  Aligned_cols=20  Identities=30%  Similarity=0.491  Sum_probs=18.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|+||+|||||.++|.|-..
T Consensus        39 vGeSGsGKSTL~r~l~Gl~~   58 (252)
T COG1124          39 VGESGSGKSTLARLLAGLEK   58 (252)
T ss_pred             EcCCCCCHHHHHHHHhcccC
Confidence            69999999999999999654

>smart00275 G_alpha G protein alpha subunit

Probab=95.84  E-value=0.039  Score=49.64  Aligned_cols=83  Identities=8%  Similarity=0.089  Sum_probs=51.3

Q ss_pred             eeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC-------CHHHHHHHHHHHhh
Q 025189           32 RPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-------DDLDRQIIKAVTGT  104 (256)
Q Consensus        32 ~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~-------~~~~~~~~~~l~~~  104 (256)
                      ........+++..+.+||..|.....   ..+    ..|.  .++++|+||+++++...       ..-....+..+...
T Consensus       173 Gi~~~~f~~~~~~~~~~DvgGqr~~R---~kW----~~~f--~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l  243 (342)
T smart00275      173 GIQETAFIVKKLFFRMFDVGGQRSER---KKW----IHCF--DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI  243 (342)
T ss_pred             ceEEEEEEECCeEEEEEecCCchhhh---hhH----HHHh--CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH
Confidence            33445567788999999999974321   222    2233  58999999988875310       11122333444444


Q ss_pred             cCCcc--cccEEEEEecccCC
Q 025189          105 FGKQI--WRKSLLVLTHAQLC  123 (256)
Q Consensus       105 ~g~~~--~~~~ivv~Tk~D~~  123 (256)
                      +....  ..|+++++||.|+.
T Consensus       244 ~~~~~~~~~piil~~NK~D~~  264 (342)
T smart00275      244 CNSRWFANTSIILFLNKIDLF  264 (342)
T ss_pred             HcCccccCCcEEEEEecHHhH
Confidence            44321  36999999999974

Subunit of G proteins that contains the guanine nucleotide binding site

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.82  E-value=0.0048  Score=55.15  Aligned_cols=19  Identities=32%  Similarity=0.618  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|+||||||||++.|.|=.
T Consensus        35 lGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          35 LGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999953

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins

Probab=95.66  E-value=0.0077  Score=59.57  Aligned_cols=104  Identities=17%  Similarity=0.238  Sum_probs=53.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC--CCCCcceeEEEEeee---CCeEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~--~~~~t~~~~~~~~~~---~g~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~   74 (256)
                      +|.-++|||||+|.|||-.....+.  ...||...-......   ..-.+.|+|+=|...... .++. .+.-...+...
T Consensus         1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~-fe~~~alf~la   79 (742)
T PF05879_consen    1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQD-FERKSALFALA   79 (742)
T ss_pred             CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccc-hHHHHHHHHHH
Confidence            6999999999999999986533232  123443221111111   234678999988765321 1222 21111111113


Q ss_pred             CCcEEEE---EEeCCCCCCCHH----HHHHHHHHHhhcCC
Q 025189           75 TIDVLLY---ADRLDAYRVDDL----DRQIIKAVTGTFGK  107 (256)
Q Consensus        75 ~~d~vL~---v~~~d~~r~~~~----~~~~~~~l~~~~g~  107 (256)
                      -.|++|+   ++++.  +....    -+.+++.-.+.|+.
T Consensus        80 ~s~~~iiN~w~~~iG--~~~~an~~lLktvfevnl~lf~~  117 (742)
T PF05879_consen   80 VSDVLIINMWEHDIG--RYQGANMGLLKTVFEVNLQLFGK  117 (742)
T ss_pred             hhhheeeehhhhhhh--hhcccchHHHHHHHHHHHHHHhh
Confidence            4566543   44554  33333    34455555667753

It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=95.64  E-value=0.11  Score=37.78  Aligned_cols=66  Identities=23%  Similarity=0.324  Sum_probs=35.7

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEE
Q 025189            2 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLY   81 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~   81 (256)
                      .+.|+||||+.-.|...- +..+      .+....... ....+.|+|+|+..+.     .....+      ..+|.+++
T Consensus         7 ~kgG~Gkst~~~~la~~~-~~~~------~~vl~~d~d-~~~d~viiD~p~~~~~-----~~~~~l------~~ad~viv   67 (104)
T cd02042           7 QKGGVGKTTTAVNLAAAL-ARRG------KRVLLIDLD-PQYDYIIIDTPPSLGL-----LTRNAL------AAADLVLI   67 (104)
T ss_pred             CCCCcCHHHHHHHHHHHH-HhCC------CcEEEEeCC-CCCCEEEEeCcCCCCH-----HHHHHH------HHCCEEEE
Confidence            378999999876554321 1100      001111111 1156799999997532     222233      36899999


Q ss_pred             EEeCC
Q 025189           82 ADRLD   86 (256)
Q Consensus        82 v~~~d   86 (256)
                      +++.+
T Consensus        68 ~~~~~   72 (104)
T cd02042          68 PVQPS   72 (104)
T ss_pred             eccCC
Confidence            85554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.54  E-value=0.0074  Score=50.08  Aligned_cols=19  Identities=32%  Similarity=0.464  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          33 VGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.54  E-value=0.013  Score=50.99  Aligned_cols=18  Identities=39%  Similarity=0.693  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.||+||||+||.|.|-
T Consensus        30 FG~SGsGKTslin~IaGL   47 (352)
T COG4148          30 FGPSGSGKTSLINMIAGL   47 (352)
T ss_pred             ecCCCCChhhHHHHHhcc
Confidence            489999999999999985

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.49  E-value=0.0079  Score=50.87  Aligned_cols=19  Identities=32%  Similarity=0.606  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          32 IGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=0.024  Score=44.34  Aligned_cols=73  Identities=10%  Similarity=0.081  Sum_probs=41.9

Q ss_pred             eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCC-CCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189           39 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVL  117 (256)
Q Consensus        39 ~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~-~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~  117 (256)
                      .+.+.++.+||.-|.+.-.    -+.+.+-     ...|+++||++-.+ .|....-..+...|++---..  -..++++
T Consensus        58 ~yKNLk~~vwdLggqtSir----PyWRcYy-----~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~a  126 (182)
T KOG0072|consen   58 PYKNLKFQVWDLGGQTSIR----PYWRCYY-----ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFA  126 (182)
T ss_pred             ccccccceeeEccCccccc----HHHHHHh-----cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEe
Confidence            4566678899998875321    2333332     47899999955433 224444444444443321111  3567778


Q ss_pred             ecccC
Q 025189          118 THAQL  122 (256)
Q Consensus       118 Tk~D~  122 (256)
                      ||.|.
T Consensus       127 nKqD~  131 (182)
T KOG0072|consen  127 NKQDY  131 (182)
T ss_pred             ccccc
Confidence            99986

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.011  Score=49.91  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=20.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN   24 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~   24 (256)
                      ||+.|+|||||.++|.|...+.+.
T Consensus        36 MGPNGsGKSTLa~~i~G~p~Y~Vt   59 (251)
T COG0396          36 MGPNGSGKSTLAYTIMGHPKYEVT   59 (251)
T ss_pred             ECCCCCCHHHHHHHHhCCCCceEe
Confidence            699999999999999998655443

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.33  E-value=0.0098  Score=48.59  Aligned_cols=19  Identities=32%  Similarity=0.483  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        24 ~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        24 LGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.32  E-value=0.0097  Score=49.66  Aligned_cols=19  Identities=37%  Similarity=0.534  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        36 ~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          36 VGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EcCCCCCHHHHHHHHhCCc
Confidence            6999999999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.31  E-value=0.0096  Score=49.65  Aligned_cols=19  Identities=32%  Similarity=0.665  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        35 VGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.31  E-value=0.0096  Score=49.82  Aligned_cols=19  Identities=26%  Similarity=0.506  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          32 LGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.30  E-value=0.0097  Score=49.79  Aligned_cols=19  Identities=32%  Similarity=0.590  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          36 VGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=95.27  E-value=0.091  Score=46.54  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=41.1

Q ss_pred             eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhc-CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLN-KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~-~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +.+.++|.||..        .  .++.+|+. .=-|..|+|+..+......+..+-+-.|. +.|-   +++++|=||.|
T Consensus        86 R~VSfVDaPGHe--------~--LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iigi---k~iiIvQNKID  151 (415)
T COG5257          86 RRVSFVDAPGHE--------T--LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIGI---KNIIIVQNKID  151 (415)
T ss_pred             EEEEEeeCCchH--------H--HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhcc---ceEEEEecccc
Confidence            467999999963        2  23333321 12478888877775333444444443332 2243   89999999999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      +.
T Consensus       152 lV  153 (415)
T COG5257         152 LV  153 (415)
T ss_pred             ee
Confidence            96

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.27  E-value=0.01  Score=49.41  Aligned_cols=19  Identities=26%  Similarity=0.527  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        34 TGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=95.27  E-value=0.023  Score=50.57  Aligned_cols=17  Identities=29%  Similarity=0.567  Sum_probs=15.1

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |.-|+|||||+|.|+..
T Consensus        11 GFLGaGKTTll~~ll~~   27 (318)
T PRK11537         11 GFLGAGKTTLLRHILNE   27 (318)
T ss_pred             ECCCCCHHHHHHHHHhc
Confidence            77899999999999854

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.26  E-value=0.0095  Score=50.06  Aligned_cols=19  Identities=26%  Similarity=0.408  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          32 IGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             ECCCCCCHHHHHHHHHhhc
Confidence            5999999999999999964

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.25  E-value=0.01  Score=49.09  Aligned_cols=19  Identities=32%  Similarity=0.515  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          32 TGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.24  E-value=0.01  Score=49.24  Aligned_cols=19  Identities=21%  Similarity=0.429  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          31 LGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.23  E-value=0.0099  Score=48.33  Aligned_cols=17  Identities=41%  Similarity=0.499  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++|+|||||+|.+++
T Consensus        27 ~G~nG~GKSTLl~~il~   43 (176)
T cd03238          27 TGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            59999999999999985

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.23  E-value=0.11  Score=39.19  Aligned_cols=19  Identities=26%  Similarity=0.490  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      .|++|+|||++++.+...-
T Consensus        25 ~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          25 YGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998753

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.22  E-value=0.01  Score=48.53  Aligned_cols=19  Identities=26%  Similarity=0.450  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+||||++++|++.-
T Consensus        31 ~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          31 SGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             ECCCCCCHHHHHHHHHhhc
Confidence            5999999999999999863

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.20  E-value=0.011  Score=49.41  Aligned_cols=19  Identities=26%  Similarity=0.737  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          32 LGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.18  E-value=0.011  Score=48.82  Aligned_cols=18  Identities=33%  Similarity=0.663  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+|||||||++|.+.|-
T Consensus        37 lGpSGcGKTTLLnl~AGf   54 (259)
T COG4525          37 LGPSGCGKTTLLNLIAGF   54 (259)
T ss_pred             EcCCCccHHHHHHHHhcC
Confidence            599999999999999985

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=95.15  E-value=0.028  Score=53.36  Aligned_cols=104  Identities=14%  Similarity=0.223  Sum_probs=61.2

Q ss_pred             CCCHHHHHHHHhCCCcc--cccCC---------------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189            5 GVGKSSTVNSVIGERVV--TVNSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELI   67 (256)
Q Consensus         5 G~GKSSliN~l~g~~~~--~~~~~---------------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i   67 (256)
                      -+||+|+-+.++-....  ..+..               .+.|-........+...++.+|||||..|....-+..+..+
T Consensus        49 dsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVl  128 (721)
T KOG0465|consen   49 DAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVL  128 (721)
T ss_pred             ecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhc
Confidence            37999999888754211  11111               11222233334456788999999999998766555555333


Q ss_pred             HHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           68 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        68 ~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                            .+  +|++++.+.  ..........+++++.-     .|.+...||.|..
T Consensus       129 ------DG--aVlvl~aV~--GVqsQt~tV~rQ~~ry~-----vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  129 ------DG--AVLVLDAVA--GVESQTETVWRQMKRYN-----VPRICFINKMDRM  169 (721)
T ss_pred             ------cC--eEEEEEccc--ceehhhHHHHHHHHhcC-----CCeEEEEehhhhc
Confidence                  12  223332233  34455556666666653     6778888999864

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.14  E-value=0.012  Score=50.02  Aligned_cols=19  Identities=26%  Similarity=0.431  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        34 IGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999999964

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.14  E-value=0.012  Score=48.93  Aligned_cols=19  Identities=26%  Similarity=0.594  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          32 LGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=95.13  E-value=0.055  Score=41.97  Aligned_cols=46  Identities=15%  Similarity=0.137  Sum_probs=32.9

Q ss_pred             CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..+|++|+|+++.. .....+..+.+.+.+.. .+  +++++|+||+|+.
T Consensus        10 ~~aD~vl~ViD~~~-p~~~~~~~l~~~l~~~~-~~--k~~iivlNK~DL~   55 (141)
T cd01857          10 ERSDIVVQIVDARN-PLLFRPPDLERYVKEVD-PR--KKNILLLNKADLL   55 (141)
T ss_pred             hhCCEEEEEEEccC-CcccCCHHHHHHHHhcc-CC--CcEEEEEechhcC
Confidence            58999999977653 24445556666666542 22  7999999999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.12  E-value=0.012  Score=48.74  Aligned_cols=19  Identities=32%  Similarity=0.712  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          32 LGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.11  E-value=0.012  Score=49.09  Aligned_cols=19  Identities=37%  Similarity=0.751  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          34 LGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.10  E-value=0.012  Score=48.77  Aligned_cols=19  Identities=26%  Similarity=0.394  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          32 IGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.09  E-value=0.013  Score=48.46  Aligned_cols=19  Identities=32%  Similarity=0.424  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|.-
T Consensus        30 ~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        30 IGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.09  E-value=0.012  Score=43.85  Aligned_cols=16  Identities=31%  Similarity=0.623  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|+||+|||||++.+.
T Consensus        21 ~GpSGsGKSTLl~~l~   36 (107)
T cd00820          21 TGDSGIGKTELALELI   36 (107)
T ss_pred             EcCCCCCHHHHHHHhh
Confidence            5999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.08  E-value=0.012  Score=48.83  Aligned_cols=19  Identities=32%  Similarity=0.574  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          33 VGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.07  E-value=0.012  Score=49.58  Aligned_cols=19  Identities=32%  Similarity=0.686  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        37 ~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          37 IGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.06  E-value=0.012  Score=47.94  Aligned_cols=18  Identities=33%  Similarity=0.536  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+||||+++.|.+.
T Consensus         8 ~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          8 MGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            599999999999999875

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.05  E-value=0.014  Score=47.97  Aligned_cols=20  Identities=35%  Similarity=0.604  Sum_probs=18.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|+||+|||||++.|+++..
T Consensus        34 ~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          34 TGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             ECCCCCCHHHHHHHHHhhhc
Confidence            59999999999999999754

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.05  E-value=0.013  Score=46.76  Aligned_cols=19  Identities=32%  Similarity=0.571  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          32 LGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.04  E-value=0.013  Score=48.93  Aligned_cols=19  Identities=32%  Similarity=0.496  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        37 ~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        37 VGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.03  E-value=0.013  Score=48.94  Aligned_cols=19  Identities=21%  Similarity=0.366  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        19 ~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         19 LAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999964

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.03  E-value=0.013  Score=49.67  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          33 IGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999964

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.03  E-value=0.013  Score=48.45  Aligned_cols=19  Identities=32%  Similarity=0.686  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          32 LGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999964

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.03  E-value=0.013  Score=48.72  Aligned_cols=19  Identities=32%  Similarity=0.669  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        31 ~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          31 VGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            5999999999999999964

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.02  E-value=0.013  Score=47.34  Aligned_cols=19  Identities=32%  Similarity=0.627  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          32 LGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=95.02  E-value=0.11  Score=46.41  Aligned_cols=61  Identities=16%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             EEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           46 NIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        46 ~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      .+|||+|+.++ .--...+..|    +.-++|+++.+   +.       .+++..+++.++..-|.+ ++-+-|.+.
T Consensus       215 ~iInT~g~i~~-egy~~llhai----~~f~v~vviVL---g~-------ErLy~~lkk~~~~~~~v~-vv~lpKsgG  275 (415)
T KOG2749|consen  215 CIINTCGWIEG-EGYAALLHAI----KAFEVDVVIVL---GQ-------ERLYSSLKKDLPPKKNVR-VVKLPKSGG  275 (415)
T ss_pred             eEEeccceecc-ccHHHHHHHH----HHcCccEEEEe---cc-------HHHHHHHHhhccccccce-EEEecCCCC
Confidence            68999999873 2222333333    33488888877   42       267788888887553444 344456554

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=95.01  E-value=0.06  Score=42.62  Aligned_cols=110  Identities=20%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+..||+|++-...|....... .......+........|.  .+.+||.-|..+..  +     .+-  +...+.-+
T Consensus        26 lGD~qiGKTs~mvkYV~~~~de~~-~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~--n-----~lP--iac~dsva   95 (205)
T KOG1673|consen   26 LGDAQIGKTSLMVKYVQNEYDEEY-TQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI--N-----MLP--IACKDSVA   95 (205)
T ss_pred             ecccccCceeeehhhhcchhHHHH-HHHhCccceeeEEEecceEEEEEEEecCCcHhhh--c-----cCc--eeecCcEE
Confidence            589999999999988887532111 111111222233344444  55799999975321  1     110  02257788


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +||++++.. |.+-  -.+.+..++..|-+-----|+|.||-|.+
T Consensus        96 IlFmFDLt~-r~TL--nSi~~WY~QAr~~NktAiPilvGTKyD~f  137 (205)
T KOG1673|consen   96 ILFMFDLTR-RSTL--NSIKEWYRQARGLNKTAIPILVGTKYDLF  137 (205)
T ss_pred             EEEEEecCc-hHHH--HHHHHHHHHHhccCCccceEEeccchHhh
Confidence            999988885 2222  22334444544433212347788998753

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.00  E-value=0.014  Score=49.37  Aligned_cols=19  Identities=32%  Similarity=0.496  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         41 VGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=94.99  E-value=0.055  Score=48.48  Aligned_cols=18  Identities=28%  Similarity=0.453  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.||+||||++|+|++.
T Consensus       166 ~G~tgSGKTTll~aL~~~  183 (332)
T PRK13900        166 SGGTSTGKTTFTNAALRE  183 (332)
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            499999999999999975

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=94.95  E-value=0.014  Score=49.08  Aligned_cols=19  Identities=32%  Similarity=0.641  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          32 LGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PHA02518 ParA-like protein; Provisional

Probab=94.94  E-value=0.13  Score=42.20  Aligned_cols=67  Identities=10%  Similarity=0.198  Sum_probs=35.7

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhh--cCCcccccEEEEEec
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT--FGKQIWRKSLLVLTH  119 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~--~g~~~~~~~ivv~Tk  119 (256)
                      ...+.||||||-.+     ......+      ..+|.+|+++..+...+.. -.++++.+...  +... .....++.|+
T Consensus        76 ~~d~viiD~p~~~~-----~~~~~~l------~~aD~viip~~ps~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~iv~n~  142 (211)
T PHA02518         76 GYDYVVVDGAPQDS-----ELARAAL------RIADMVLIPVQPSPFDIWA-APDLVELIKARQEVTDG-LPKFAFIISR  142 (211)
T ss_pred             cCCEEEEeCCCCcc-----HHHHHHH------HHCCEEEEEeCCChhhHHH-HHHHHHHHHHHHhhCCC-CceEEEEEec
Confidence            45789999998532     1222222      3789999996665322221 22334444332  1221 2345677777


Q ss_pred             cc
Q 025189          120 AQ  121 (256)
Q Consensus       120 ~D  121 (256)
                      .+
T Consensus       143 ~~  144 (211)
T PHA02518        143 AI  144 (211)
T ss_pred             cC
Confidence            64

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=94.93  E-value=0.015  Score=48.54  Aligned_cols=19  Identities=32%  Similarity=0.606  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          37 LGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999964

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=94.91  E-value=0.014  Score=50.12  Aligned_cols=19  Identities=32%  Similarity=0.594  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         33 LGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=94.90  E-value=0.094  Score=38.86  Aligned_cols=18  Identities=28%  Similarity=0.484  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+|||+++..+...
T Consensus         6 ~G~~gvGKt~l~~~~~~~   23 (124)
T smart00010        6 IGDSGVGKVGKSARFVQF   23 (124)
T ss_pred             ECCCChhHHHHHHHHhcC
Confidence            699999999999998543

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=94.88  E-value=0.015  Score=48.27  Aligned_cols=19  Identities=32%  Similarity=0.672  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          32 LGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.87  E-value=0.028  Score=58.56  Aligned_cols=19  Identities=42%  Similarity=0.719  Sum_probs=17.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||+.+|+|+-
T Consensus       553 vG~vGsGKSSLL~AiLGEm  571 (1381)
T KOG0054|consen  553 VGPVGSGKSSLLSAILGEM  571 (1381)
T ss_pred             ECCCCCCHHHHHHHHhcCc
Confidence            6999999999999999984

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=94.86  E-value=0.015  Score=49.06  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|.-
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          32 IGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            5999999999999999963

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=94.86  E-value=0.016  Score=54.77  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=18.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|+||+||||++|.|.|-..
T Consensus       353 vG~SGaGKSTLl~lL~G~~~  372 (559)
T COG4988         353 VGASGAGKSTLLNLLLGFLA  372 (559)
T ss_pred             ECCCCCCHHHHHHHHhCcCC
Confidence            69999999999999999644

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=94.85  E-value=0.015  Score=49.80  Aligned_cols=18  Identities=28%  Similarity=0.464  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus        38 ~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         38 IGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999985

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.85  E-value=0.016  Score=48.07  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         34 TGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=94.84  E-value=0.016  Score=48.61  Aligned_cols=19  Identities=32%  Similarity=0.643  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        37 ~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          37 VGESGSGKSTLARAILGLL   55 (228)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=94.84  E-value=0.015  Score=49.23  Aligned_cols=18  Identities=39%  Similarity=0.724  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        32 MGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999996

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=94.84  E-value=0.016  Score=48.72  Aligned_cols=19  Identities=26%  Similarity=0.476  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        35 ~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          35 VGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             ECCCCCCHHHHHHHHhcCc
Confidence            5999999999999999974

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=94.83  E-value=0.016  Score=47.65  Aligned_cols=19  Identities=26%  Similarity=0.525  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        32 TGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=94.82  E-value=0.016  Score=49.10  Aligned_cols=19  Identities=26%  Similarity=0.576  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          34 LGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.81  E-value=0.017  Score=46.95  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=17.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|++|+|||||++.|.|...
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          32 AGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            59999999999999999743

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=94.79  E-value=0.017  Score=49.80  Aligned_cols=20  Identities=30%  Similarity=0.625  Sum_probs=17.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|++|+|||||++.|.|-..
T Consensus        32 vG~nGsGKSTLlk~l~Gl~~   51 (255)
T cd03236          32 VGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCcC
Confidence            69999999999999999743

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=94.78  E-value=0.015  Score=43.48  Aligned_cols=18  Identities=28%  Similarity=0.418  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.+||||||+.+.|...
T Consensus         5 ~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    5 SGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999764

...

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=94.77  E-value=0.017  Score=48.55  Aligned_cols=19  Identities=32%  Similarity=0.574  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        42 ~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         42 IGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999999974

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=94.77  E-value=0.017  Score=48.94  Aligned_cols=19  Identities=26%  Similarity=0.398  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        33 LGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999974

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=94.77  E-value=0.017  Score=48.76  Aligned_cols=19  Identities=37%  Similarity=0.587  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        18 ~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        18 VGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999974

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.77  E-value=0.016  Score=49.44  Aligned_cols=19  Identities=32%  Similarity=0.365  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        35 ~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         35 MGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            5999999999999999964

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=94.76  E-value=0.017  Score=49.33  Aligned_cols=19  Identities=21%  Similarity=0.382  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        35 ~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         35 IGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=94.76  E-value=0.017  Score=48.11  Aligned_cols=19  Identities=32%  Similarity=0.629  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|.-
T Consensus        29 ~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          29 FGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=94.74  E-value=0.018  Score=48.95  Aligned_cols=19  Identities=32%  Similarity=0.389  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         34 LGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=94.74  E-value=0.018  Score=48.67  Aligned_cols=19  Identities=37%  Similarity=0.648  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        17 ~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        17 IGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=94.72  E-value=0.018  Score=49.95  Aligned_cols=19  Identities=32%  Similarity=0.410  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        56 ~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          56 MGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999964

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=94.72  E-value=0.018  Score=48.49  Aligned_cols=19  Identities=32%  Similarity=0.772  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        32 LGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.71  E-value=0.017  Score=49.44  Aligned_cols=19  Identities=26%  Similarity=0.469  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         39 IGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            5999999999999999964

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=94.71  E-value=0.018  Score=46.66  Aligned_cols=19  Identities=32%  Similarity=0.611  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        31 ~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          31 LGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10908 cell division protein FtsE; Provisional

Probab=94.71  E-value=0.018  Score=48.25  Aligned_cols=19  Identities=32%  Similarity=0.574  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         34 TGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.70  E-value=0.018  Score=47.24  Aligned_cols=19  Identities=37%  Similarity=0.525  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         32 KGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=94.70  E-value=0.017  Score=46.17  Aligned_cols=18  Identities=39%  Similarity=0.601  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      ||.+|+||||+.+.|.+.
T Consensus         1 ~G~sGsGKSTla~~la~~   18 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQ   18 (163)
T ss_pred             CCCCCCcHHHHHHHHHHH
Confidence            799999999999988765

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.70  E-value=0.018  Score=49.58  Aligned_cols=18  Identities=33%  Similarity=0.639  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+.|||||||+++|.|-
T Consensus        34 iGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          34 LGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            699999999999999984

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=94.69  E-value=0.017  Score=46.67  Aligned_cols=18  Identities=22%  Similarity=0.481  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||+++.|.+.
T Consensus         7 ~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         7 VGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.69  E-value=0.019  Score=47.39  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         33 KGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=94.68  E-value=0.018  Score=47.64  Aligned_cols=19  Identities=26%  Similarity=0.450  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          40 VGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            5999999999999999964

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=94.67  E-value=0.017  Score=48.87  Aligned_cols=19  Identities=32%  Similarity=0.412  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        35 ~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          35 VGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             EeCCCCCHHHHHHHHhccC
Confidence            5999999999999999974

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.66  E-value=0.02  Score=45.92  Aligned_cols=19  Identities=37%  Similarity=0.527  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|+|..
T Consensus        33 ~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          33 TGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999974

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.65  E-value=0.018  Score=48.18  Aligned_cols=16  Identities=31%  Similarity=0.603  Sum_probs=13.5

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      ||+|||||||++..|-
T Consensus        39 IGPSGcGKST~LR~lN   54 (253)
T COG1117          39 IGPSGCGKSTLLRCLN   54 (253)
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            6999999999986554

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=94.64  E-value=0.019  Score=47.42  Aligned_cols=19  Identities=26%  Similarity=0.489  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          32 TGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=94.64  E-value=0.019  Score=47.93  Aligned_cols=19  Identities=32%  Similarity=0.524  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        36 ~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          36 IGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             ECCCCCCHHHHHHHHhcCc
Confidence            5999999999999999974

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=94.64  E-value=0.019  Score=49.04  Aligned_cols=18  Identities=33%  Similarity=0.525  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus        37 ~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         37 IGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            599999999999999985

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.64  E-value=0.019  Score=49.13  Aligned_cols=19  Identities=32%  Similarity=0.429  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        36 ~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         36 MGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            6999999999999999964

>PRK13695 putative NTPase; Provisional

Probab=94.63  E-value=0.1  Score=41.94  Aligned_cols=18  Identities=33%  Similarity=0.455  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||++..+.+.
T Consensus         6 tG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          6 TGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999987653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=94.63  E-value=0.02  Score=47.73  Aligned_cols=19  Identities=42%  Similarity=0.627  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        30 ~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        30 MGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999974

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.62  E-value=0.019  Score=49.75  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         33 VGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            6999999999999999964

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=94.62  E-value=0.019  Score=50.50  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=17.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|++|+|||||++.|+|.-.
T Consensus        37 lG~NGAGKTTllk~l~gl~~   56 (293)
T COG1131          37 LGPNGAGKTTLLKILAGLLK   56 (293)
T ss_pred             ECCCCCCHHHHHHHHhCCcC
Confidence            69999999999999999743

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.61  E-value=0.019  Score=49.00  Aligned_cols=18  Identities=28%  Similarity=0.436  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         34 IGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            599999999999999995

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.61  E-value=0.3  Score=43.71  Aligned_cols=19  Identities=26%  Similarity=0.490  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|.-|+||||++|.|.+..
T Consensus       194 lG~QgsGKStllslLaans  212 (491)
T KOG4181|consen  194 LGGQGSGKSTLLSLLAANS  212 (491)
T ss_pred             ecCCCccHHHHHHHHhccC
Confidence            6899999999999999863

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.61  E-value=0.02  Score=47.83  Aligned_cols=19  Identities=26%  Similarity=0.499  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        43 ~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         43 QGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             EcCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=94.61  E-value=0.019  Score=49.37  Aligned_cols=19  Identities=26%  Similarity=0.513  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        36 ~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         36 IGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            5999999999999999964

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.60  E-value=0.019  Score=50.29  Aligned_cols=19  Identities=32%  Similarity=0.473  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        43 ~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         43 IGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.59  E-value=0.019  Score=49.01  Aligned_cols=18  Identities=28%  Similarity=0.530  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|-
T Consensus        35 ~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14262         35 IGPSGCGKTTLLRSINRM   52 (250)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            599999999999999985

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=94.59  E-value=0.019  Score=49.44  Aligned_cols=19  Identities=26%  Similarity=0.419  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        45 ~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         45 IGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            5999999999999999963

>cd01858 NGP_1 NGP-1

Probab=94.59  E-value=0.064  Score=42.33  Aligned_cols=46  Identities=11%  Similarity=0.176  Sum_probs=32.8

Q ss_pred             CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..+|++++|++... .+...+..+.+.+... ..+  +|.++|+||+|+.
T Consensus         7 ~~aD~il~VvD~~~-p~~~~~~~i~~~l~~~-~~~--~p~ilVlNKiDl~   52 (157)
T cd01858           7 DSSDVVIQVLDARD-PMGTRCKHVEEYLKKE-KPH--KHLIFVLNKCDLV   52 (157)
T ss_pred             hhCCEEEEEEECCC-CccccCHHHHHHHHhc-cCC--CCEEEEEEchhcC
Confidence            58999999977654 2344566666666653 222  7899999999985

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	256
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		1e-89
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-89
3def_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		9e-89
2j3e_A	249	Dimerization Is Important For The Gtpase Activity O		6e-88
3bb1_A	274	Crystal Structure Of Toc34 From Pisum Sativum In Co		2e-84
1h65_A	270	Crystal Structure Of Pea Toc34-A Novel Gtpase Of Th		2e-81

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 182/215 (84%)
Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLID 215
            LPNG AWIP LVK ITDVATN+ K+I VD   ++
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 181/215 (84%)
Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDELLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLID 215
            LPNG AWIP LVK ITDVATN+ K+I VD   ++
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256

>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262

Iteration: 1
 Score =  322 bits (826), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 152/215 (70%), Positives = 181/215 (84%)
Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDVLLY DRLD Y VD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLID 215
            LPNG AWIP LVK ITDVATN+ K+I VD   ++
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256

>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249

Iteration: 1
 Score =  320 bits (819), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 151/209 (72%), Positives = 178/209 (85%)
Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 41  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 100
Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDVLLY DRLD Y VD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 101 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 160
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct: 161 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 220
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVV 209
            LPNG AWIP LVK ITDVATN+ K+I V
Sbjct: 221 ALPNGEAWIPNLVKAITDVATNQRKAIHV 249

>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex With Mg2+ And Gmppnp Length = 274

Iteration: 1
 Score =  308 bits (788), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/223 (66%), Positives = 182/223 (81%), Gaps = 1/223 (0%)
Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNS+IGERVV+++ FQSE  RPVMVSRS+ GFTLNIIDTPGL+E GY+N
Sbjct: 45  MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104
Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
             AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164
Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPDGL YD + SKRS+ALL+ +R GA L K + +   +PV L+ENSGRC+KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223
Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKG 223
           +LPNG AWIP LV+ IT+VA NKS+SI VDK LIDG   + +G
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRG 266

>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The Chloroplast Protein Translocon Length = 270

Iteration: 1
 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/220 (65%), Positives = 178/220 (80%), Gaps = 1/220 (0%)
Query: 2   GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 61
           GKGGVGKSSTVNS+IGERVV+++ FQSE  RPV VSRS+ GFTLNIIDTPGL+E GY+N 
Sbjct: 46  GKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIEGGYIND 105
Query: 62  QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 121
            AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHAQ
Sbjct: 106 XALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165
Query: 122 LCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKI 181
             PPDGL YD + SKRS+ALL+ +R GA L K + +   +PV L+ENSGRC+KN++DEK+
Sbjct: 166 FSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224
Query: 182 LPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDD 221
           LPNG AWIP LV+ IT+VA NKS+SI VDK LID   + D
Sbjct: 225 LPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKLAAAD 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-73
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	5e-72
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	4e-24
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	2e-23
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	7e-06

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  223 bits (571), Expect = 2e-73
 Identities = 152/215 (70%), Positives = 181/215 (84%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           +GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
           +QALELIKGFL+N+TIDVLLY DRLD Y VD+LD+Q++ A+T TFGK+IW K+LLVLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPD L+Y+ + SKRSD+LLKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLID 215
            LPNG AWIP LVK ITDVATN+ K+I VD   ++
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  220 bits (562), Expect = 5e-72
 Identities = 147/222 (66%), Positives = 180/222 (81%), Gaps = 1/222 (0%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNS+IGERVV+++ FQSE  RPVMVSRS+ GFTLNIIDTPGL+E GY+N
Sbjct: 45  MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
             AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPDGL YD + SKRS+ALL+ +R GA L K + +   +PV L+ENSGRC+KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDK 222
           +LPNG AWIP LV+ IT+VA NKS+SI VDK LID   + D 
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKLAAADH 265

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score = 96.3 bits (239), Expect = 4e-24
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 22/194 (11%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 59
           +GK G GKS+  NS++ ++        Q+          S G   + IIDTP +      
Sbjct: 28  VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH 87

Query: 60  NYQALELIKGFLLNKT--IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
                + ++   L       VLL   +L   R    D+Q  + V   FG+     ++++ 
Sbjct: 88  CEALYKEVQRCYLLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLF 145

Query: 118 THAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYA---------------VP 162
           TH +       +   Y     +  L  +    G     F + A               + 
Sbjct: 146 THKEDLNGG--SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIE 203

Query: 163 VALVENSGRCSKNE 176
             L+E +G    N 
Sbjct: 204 DLLMEKNGDHYTNG 217

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score = 94.3 bits (234), Expect = 2e-23
 Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 23/199 (11%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTV-NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 59
           +GK G GKS+T NS++G +V     + +S   +    S S     L ++DTPG+ +    
Sbjct: 35  VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP 94

Query: 60  NYQALELIKGFLLNKT--IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
           N +  + I   +L  +     LL    L   R  + + +  + +   FG++     +L+ 
Sbjct: 95  NAETSKEIIRCILLTSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIF 152

Query: 118 THAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYA---------------VP 162
           T          N   Y  +  + +   + +          + A               + 
Sbjct: 153 TRKDDL--GDTNLHDYLREAPEDIQDLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQ 209

Query: 163 VALVENSGRCSKNENDEKI 181
             + EN   C  N   ++ 
Sbjct: 210 RVVRENKEGCYTNRMYQRA 228

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-09
 Identities = 52/303 (17%), Positives = 92/303 (30%), Gaps = 83/303 (27%)

Query: 2   GKGGVGKSSTVNSVI-GERVVTVNSFQSEALRPVMVSRSKGGFTLNI--IDTPGLVEAGY 58
           G  G GK+     V    +V     F                F LN+   ++P  V    
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDF--------------KIFWLNLKNCNSPETV---- 198

Query: 59  VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 118
                LE+++  L     +    +D     ++      I   +      + +   LLVL 
Sbjct: 199 -----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRRLLKSKPYENCLLVLL 251

Query: 119 HAQLCPPDGLN-YDVYCSKRSDALLKTIR-------LGAGLGKHEF-EDYAVPVALVENS 169
           +  +      N +++ C      +L T R       L A    H   + +++ +   E  
Sbjct: 252 N--VQNAKAWNAFNLSCK-----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 170 GRCSKN-ENDEKILP----NGNAWIPTLVKGI-----TDVATNK-SKSIVVDK--KLIDG 216
               K  +   + LP      N   P  +  I       +AT    K +  DK   +I+ 
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 217 S----GSDDKGKM-----------WIPA-VIGLQWLILKWIEGAI-------KSDIAKDK 253
           S       +  KM            IP  ++ L W  +   +  +        S + K  
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 254 KPY 256
           K  
Sbjct: 422 KES 424

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 16/149 (10%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQS---EALRPVMVSRSKGGFTLNIIDTPGLVEAG 57
            G+ G GKSS +N++ G       + ++   E        +      +   D PG+    
Sbjct: 75  TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN 134

Query: 58  YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
           +     LE +K        D  +        R    D  I KA+       + ++   V 
Sbjct: 135 FPPDTYLEKMK----FYEYDFFIIISAT---RFKKNDIDIAKAI-----SMMKKEFYFVR 182

Query: 118 THAQLCPPDGLNYDVYCSKRSDALLKTIR 146
           T       +  +     +   + +L+ IR
Sbjct: 183 TKVDSDITNEAD-GEPQTFDKEKVLQDIR 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	100.0
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	100.0
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.77
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.7
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.67
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.67
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.66
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.65
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.63
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.62
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.59
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.59
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.57
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.57
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.57
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.56
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.56
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.55
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.55
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.55
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.54
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.54
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.54
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.54
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.54
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.53
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.53
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.53
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.53
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.53
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.53
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.53
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.53
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.53
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.52
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.52
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.52
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.52
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.52
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.52
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.52
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.52
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.51
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.51
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.51
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.51
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.51
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.51
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.5
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.5
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.5
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.5
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.5
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.5
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.49
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.49
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.49
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.49
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.49
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.49
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.49
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.49
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.48
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.48
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.48
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.48
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.48
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.47
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.47
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.47
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.47
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.47
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.47
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.47
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.47
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.47
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.46
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.46
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.46
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.46
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.46
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.46
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.46
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.45
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.45
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.45
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.45
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.45
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.45
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.44
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.44
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.44
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.44
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.44
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.44
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.44
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.43
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.43
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.43
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.43
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.43
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.43
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.43
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.43
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.43
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.43
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.43
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.42
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.42
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.42
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.42
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.42
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.41
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.41
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.41
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.4
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.4
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.4
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.39
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.39
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.39
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.38
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.38
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.38
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.37
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.37
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.37
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.37
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.37
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.37
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.37
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.36
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.35
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.35
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.34
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.34
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.34
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.31
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.31
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.3
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.3
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.3
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.29
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.28
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.28
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.28
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.93
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.26
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.24
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.23
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.23
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.22
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.21
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.19
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.18
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.17
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.15
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.14
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.13
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.11
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.1
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.09
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.09
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.08
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.07
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.05
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.05
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.04
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.04
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.03
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.01
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.01
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.01
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.01
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.0
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.99
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.98
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.97
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.95
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.93
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.93
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.93
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.9
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.89
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.87
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.87
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.85
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.85
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.8
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.78
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.71
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.66
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.65
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.64
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.61
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.59
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.57
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.55
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.54
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.44
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.4
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.34
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.23
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.22
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.19
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.11
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.09
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.98
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.82
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.73
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.7
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.68
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.65
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.64
2xxa_A	433	Signal recognition particle protein; protein trans	97.6
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.55
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.49
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.28
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.27
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.23
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.23
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.21
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.18
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	97.03
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	97.0
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.98
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.89
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.86
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.86
2og2_A	359	Putative signal recognition particle receptor; nuc	96.84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.78
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.77
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.67
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.14
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.12
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.05
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.94
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.79
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.79
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.78
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.77
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.74
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.67
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.67
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.67
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.66
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.66
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.65
1g6h_A	257	High-affinity branched-chain amino acid transport	95.65
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.63
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.62
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.6
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.59
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.57
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.56
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.55
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.54
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.51
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.49
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.47
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.47
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.47
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.42
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.4
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.37
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.36
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.34
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.33
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.33
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.32
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.28
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.12
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.06
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.03
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.98
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.97
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.97
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.91
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.89
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.83
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.82
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.8
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.75
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.75
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.75
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.73
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.71
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.7
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.7
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.64
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.63
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.59
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.58
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.57
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.54
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.48
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.43
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.39
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.28
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.28
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.27
1p9r_A	418	General secretion pathway protein E; bacterial typ	94.23
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.19
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.17
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.15
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.14
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.13
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.11
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.11
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.1
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.07
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.05
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.94
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.85
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.83
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	93.8
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	93.75
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	93.54
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.54
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.35
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.31
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	93.26
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.24
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	93.22
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.2
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	93.19
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.12
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.1
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.02
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.93
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	92.88
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	92.82
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.82
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	92.81
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.76
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	92.76
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	92.71
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	92.62
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.59
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	92.58
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	92.57
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	92.53
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	92.5
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	92.49
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	92.43
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	92.4
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.37
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	92.26
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	92.25
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	92.22
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	92.21
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	92.07
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	91.99
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	91.92
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	91.85
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	91.81
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	91.73
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	91.72
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	91.64
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	91.57
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	91.47
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	91.32
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.31
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	91.3
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	91.27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.26
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	91.25
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	91.21
2cvh_A	220	DNA repair and recombination protein RADB; filamen	91.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	91.14
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	91.13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.07
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	91.02
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	90.98
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	90.97
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	90.97
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	90.93
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	90.87
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	90.86
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	90.82
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	90.61
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	90.57
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	90.53
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.5
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	90.38
1via_A	175	Shikimate kinase; structural genomics, transferase	90.27
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	90.24
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	90.2
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.15
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	90.12
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	90.08
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	90.01
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	89.99
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	89.92
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	89.84
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	89.81
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	89.62
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	89.44
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	89.41
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	89.39
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	89.38
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	89.34
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	89.25
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	89.24
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	89.24
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	89.19
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	89.18
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	89.09
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	89.03
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	88.9
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	88.89
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	88.81
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	88.78
1e69_A	322	Chromosome segregation SMC protein; structural mai	88.77
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	88.75
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	88.65
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	88.59
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	88.51
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	88.49
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	88.47
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	88.34
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	88.3
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	88.27
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	88.26
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	88.18
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	88.16
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	88.15
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	88.14
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	88.09
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	88.05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	88.0
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	88.0
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	87.91
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	87.91
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	87.88
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	87.85
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	87.83
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	87.82
2vli_A	183	Antibiotic resistance protein; transferase, tunica	87.78
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	87.7
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	87.64
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	87.62
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	87.52
3bos_A	242	Putative DNA replication factor; P-loop containing	87.48
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	87.46
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	87.29
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	87.25
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	87.11
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	87.11
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	87.04
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	86.84
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	86.78
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	86.78
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	86.71
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	86.62
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	86.59
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	86.57
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	86.46
2chg_A	226	Replication factor C small subunit; DNA-binding pr	86.18
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	86.11
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	85.99
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	85.98
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	85.94
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	85.72
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	85.65
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	85.44
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	85.41
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	85.39
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	85.37
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	85.36
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	85.33
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	85.28
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	85.27
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	84.78
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	84.73
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	84.66
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	84.44
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	84.39
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	84.11
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	84.09
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	83.88
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	83.63
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	83.51
2qgz_A	308	Helicase loader, putative primosome component; str	83.38
1tue_A	212	Replication protein E1; helicase, replication, E1E	83.27
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	83.2
3co5_A	143	Putative two-component system transcriptional RES	82.87
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	82.77
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	82.68
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	82.65
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	82.6

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=100.00  E-value=2.2e-33  Score=241.29  Aligned_cols=215  Identities=71%  Similarity=1.113  Sum_probs=183.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|+|||||+|+|+|...+.++.+.++|..+......+++..++||||||+.+.....+.+.+.+.+++..+++|++|
T Consensus        42 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il  121 (262)
T 3def_A           42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLL  121 (262)
T ss_dssp             EECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEE
Confidence            59999999999999999987777777778888888888899999999999999998878888888898888778999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcccCccccccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYA  160 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  160 (256)
                      ||+++|..+++..+..+++.+.+.++.+.++++++|+||+|+.+.++..+++|+++....++++++++.+......+...
T Consensus       122 ~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  201 (262)
T 3def_A          122 YVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSA  201 (262)
T ss_dssp             EEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHC
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHhhhHHHHHHHHHHhCcccccccccc
Confidence            99999987788888999999999999988899999999999977777899999987777889999877654432223345


Q ss_pred             chHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCCCccccchhhcc
Q 025189          161 VPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLID  215 (256)
Q Consensus       161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~~~~~~~~~~~~  215 (256)
                      +|+..++|++.|..|..++++||++.+|++.|++++++.+.+.++++++|+++.+
T Consensus       202 ~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (262)
T 3def_A          202 IAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE  256 (262)
T ss_dssp             CEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHHHHTSCSCCEEC------
T ss_pred             CCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHHHHhCCCCceeccHHHhh
Confidence            8888899999999999999999999999999999999999999999999998765

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=100.00  E-value=1.3e-32  Score=237.26  Aligned_cols=221  Identities=67%  Similarity=1.064  Sum_probs=191.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|+|||||+|+|++...+.++...++|..+.......++..++||||||+.+.......+.+.+.+++...++|++|
T Consensus        45 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il  124 (270)
T 1h65_A           45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL  124 (270)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEE
Confidence            59999999999999999987677777777777777777888999999999999988777777777777776667899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcccCccccccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYA  160 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  160 (256)
                      ||++++..+++..+..+++.+.+.+|.+.|.|+++|+||+|+.++++.++++|.++....+++.+++..++.+. .+...
T Consensus       125 ~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~  203 (270)
T 1h65_A          125 YVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASD  203 (270)
T ss_dssp             EEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcc
Confidence            99999887788888899999999999888899999999999977777789999988788888888776666442 33456


Q ss_pred             chHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCCCccccchhhccCCCCCCC
Q 025189          161 VPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDK  222 (256)
Q Consensus       161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  222 (256)
                      +|++++++.+.|+++..+++++|....|.+.|++.+.+.+.++.+.++.|+++++++++..+
T Consensus       204 ~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~~~~~~~~~  265 (270)
T 1h65_A          204 IPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKLAAADH  265 (270)
T ss_dssp             CCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHHHHCC-
T ss_pred             CCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHhcCCCcccc
Confidence            89999999999999999999999999999999999999999999999999999998876544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=164.61  Aligned_cols=146  Identities=21%  Similarity=0.274  Sum_probs=102.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh--hcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF-QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--LNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~-~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d   77 (256)
                      +|.+|||||||+|+|+|......+.. .++|..+......+++..+.||||||+.+......+..+.+.+++  ..+++|
T Consensus        35 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (239)
T 3lxx_A           35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPH  114 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCS
T ss_pred             ECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCc
Confidence            69999999999999999876433221 256777777888899999999999999988766666666666654  346899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcc
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG  150 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  150 (256)
                      ++|+|++++  +++..+..+++.+.+.++...++|+++|+||+|+.  +....++++....+.++++++.|+.
T Consensus       115 ~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~i~~~~~~l~~l~~~~~~  183 (239)
T 3lxx_A          115 ALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDL--GDTNLHDYLREAPEDIQDLMDIFGD  183 (239)
T ss_dssp             EEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHHSS
T ss_pred             EEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC--CcccHHHHHHhchHHHHHHHHHcCC
Confidence            999998876  67778889999999988877778999999999985  3345677877666788999987753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.77  E-value=1.7e-17  Score=141.42  Aligned_cols=144  Identities=22%  Similarity=0.218  Sum_probs=109.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-CcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh--hcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--LNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d   77 (256)
                      +|.+|||||||+|+|+|...+..+..+. +|..+......+++..+.||||||+.+.......+.+.+.+++  ..+++|
T Consensus        28 vG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d  107 (260)
T 2xtp_A           28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH  107 (260)
T ss_dssp             EECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCS
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCc
Confidence            6999999999999999988665554333 6777777777889999999999999987666555554554433  237899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEe-cccCCCCCCCchhHhhhhc-cHHHHHHHHHhc
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT-HAQLCPPDGLNYDVYCSKR-SDALLKTIRLGA  149 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~T-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~~  149 (256)
                      ++|+|++++  +++..+..+++.+.+.++.....+.++|+| |+|+..   ....+++... ...++++++.+.
T Consensus       108 ~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~  176 (260)
T 2xtp_A          108 VLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVAACG  176 (260)
T ss_dssp             EEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHHHTT
T ss_pred             EEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHHHhC
Confidence            999998776  588888889999999998876788999998 999852   2455555432 355666776654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.70  E-value=2.6e-16  Score=137.55  Aligned_cols=117  Identities=20%  Similarity=0.254  Sum_probs=88.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|...+.++..+++|..........++.++.+|||||+.++...-.+ .......++  ..+|++
T Consensus        13 vG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l--~~ad~i   90 (301)
T 1wf3_A           13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVNAV   90 (301)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH--hcCCEE
Confidence            69999999999999999988777777777776666556678899999999999875432222 222233333  689999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |+|+++++ +++..+..+++.+.+..+ +  .|+++|+||+|+.
T Consensus        91 l~VvD~~~-~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~  130 (301)
T 1wf3_A           91 VWVVDLRH-PPTPEDELVARALKPLVG-K--VPILLVGNKLDAA  130 (301)
T ss_dssp             EEEEETTS-CCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGC
T ss_pred             EEEEECCC-CCChHHHHHHHHHHhhcC-C--CCEEEEEECcccC
Confidence            99988875 477777777777776532 2  7999999999985

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.67  E-value=1.1e-15  Score=119.56  Aligned_cols=115  Identities=20%  Similarity=0.188  Sum_probs=79.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++++......+..+++|..........++..+.+|||||..+..............++  ..+|+++
T Consensus         7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~~~i   84 (161)
T 2dyk_A            7 VGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--EDAEVVL   84 (161)
T ss_dssp             ECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--HhCCEEE
Confidence            59999999999999999875445555666666777777788999999999999875433333333333333  6899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++++. +++..+..+.+.+.+.     ..|+++|+||+|+.
T Consensus        85 ~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~  121 (161)
T 2dyk_A           85 FAVDGRA-ELTQADYEVAEYLRRK-----GKPVILVATKVDDP  121 (161)
T ss_dssp             EEEESSS-CCCHHHHHHHHHHHHH-----TCCEEEEEECCCSG
T ss_pred             EEEECCC-cccHhHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence            9988875 4667666666666652     27899999999984

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.67  E-value=4e-16  Score=129.23  Aligned_cols=117  Identities=16%  Similarity=0.200  Sum_probs=86.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEee-eCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhh-hcC
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVN---YQALELIKGFL-LNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~-~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l-~~~   74 (256)
                      +|.+|||||||+|+|++.. .+.++...++|......... .++..+.+|||||+.+.....   +.+...+..++ ...
T Consensus        35 ~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (223)
T 4dhe_A           35 AGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRP  114 (223)
T ss_dssp             EESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCT
T ss_pred             EcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCc
Confidence            5999999999999999987 45666666777766655554 567899999999998764332   22333444444 235


Q ss_pred             CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+|+++||++... .++..+..+++.+.+.     ..|+++|+||+|+.
T Consensus       115 ~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~  157 (223)
T 4dhe_A          115 QLCGMILMMDARR-PLTELDRRMIEWFAPT-----GKPIHSLLTKCDKL  157 (223)
T ss_dssp             TEEEEEEEEETTS-CCCHHHHHHHHHHGGG-----CCCEEEEEECGGGS
T ss_pred             CcCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEeccccC
Confidence            6899999988765 5778888888877662     27999999999985

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.66  E-value=5.6e-16  Score=135.74  Aligned_cols=115  Identities=21%  Similarity=0.292  Sum_probs=88.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-CeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYV---NYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|||||||+|+|+|...+.++..+++|..........+ +.++.+|||||+.+....   .+........++  ..+
T Consensus        16 vG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l--~~a   93 (308)
T 3iev_A           16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL--EEA   93 (308)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH--HHC
T ss_pred             ECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh--hcC
Confidence            59999999999999999988777887888888777777787 999999999999876521   122323333333  579


Q ss_pred             cEEEEEEeCCCCCCCHHHHHH-HHHHHhhcCCcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQI-IKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~-~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |++|+|++++. ..+..+..+ ++.+...     ..|+++|+||+|+.
T Consensus        94 D~il~VvD~~~-~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~  135 (308)
T 3iev_A           94 DVILFMIDATE-GWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI  135 (308)
T ss_dssp             SEEEEEEETTT-BSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred             CEEEEEEeCCC-CCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence            99999988875 456666666 6666552     27999999999985

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.65  E-value=1.1e-15  Score=122.15  Aligned_cols=118  Identities=20%  Similarity=0.188  Sum_probs=83.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|.+...+.++..+++|.........+++..+.+|||||+.+.....+. ........+  ..+|++
T Consensus        10 vG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~--~~ad~~   87 (172)
T 2gj8_A           10 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI--EQADRV   87 (172)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH--HTCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH--HhCCEE
Confidence            69999999999999999875556666677776666677788989999999999764321111 111111111  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|+++++. .+..+..++..+.+....+  .|+++|+||+|+.
T Consensus        88 i~v~D~~~~-~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~  128 (172)
T 2gj8_A           88 LFMVDGTTT-DAVDPAEIWPEFIARLPAK--LPITVVRNKADIT  128 (172)
T ss_dssp             EEEEETTTC-CCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHH
T ss_pred             EEEEECCCC-CCHHHHHHHHHHHHhcccC--CCEEEEEECccCC
Confidence            999888753 2333556777776665433  7899999999983

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.63  E-value=1.6e-15  Score=130.48  Aligned_cols=117  Identities=21%  Similarity=0.306  Sum_probs=73.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-------CCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcH---HHH----
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS-------FQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNY---QAL----   64 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~-------~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~---~~~----   64 (256)
                      +|.+|+|||||+|+|++.+.+..+.       .++.+..........+|.  .++||||||+++......   ...    
T Consensus        14 vG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~   93 (274)
T 3t5d_A           14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID   93 (274)
T ss_dssp             EECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHH
Confidence            6999999999999999987754432       122223333344445554  889999999987532211   111    


Q ss_pred             HHHHHhh-----------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           65 ELIKGFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        65 ~~i~~~l-----------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +....++           ...++|++||++......+...+..+++.+..      ..|+++|+||+|+.
T Consensus        94 ~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~  157 (274)
T 3t5d_A           94 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL  157 (274)
T ss_dssp             HHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred             HHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence            0112222           23468899999655544588888888887766      28999999999984

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.62  E-value=3.1e-15  Score=137.10  Aligned_cols=115  Identities=18%  Similarity=0.278  Sum_probs=78.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCC--cCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~--~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|+|...+.++..+++|.........++|..+.+|||||+....  .....+......++  .++|+
T Consensus         7 vG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~--~~ad~   84 (439)
T 1mky_A            7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--READL   84 (439)
T ss_dssp             ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--HhCCE
Confidence            699999999999999999877778888888888888888999999999999997532  12233333333333  68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|++... .++..+..+.+.+.+.-     +|+++|+||+|+.
T Consensus        85 il~V~D~~~-~~~~~d~~i~~~l~~~~-----~p~ilv~NK~D~~  123 (439)
T 1mky_A           85 VLFVVDGKR-GITKEDESLADFLRKST-----VDTILVANKAENL  123 (439)
T ss_dssp             EEEEEETTT-CCCHHHHHHHHHHHHHT-----CCEEEEEESCCSH
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCCCCc
Confidence            999987764 57777777777776542     7999999999973

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.59  E-value=3.4e-14  Score=118.50  Aligned_cols=118  Identities=20%  Similarity=0.268  Sum_probs=77.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH--HHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... ++..+.+|...........+..+.+|||||+.+......  .....+..+.  ...|+
T Consensus        35 vG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~  111 (228)
T 2qu8_A           35 SGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA--HINGV  111 (228)
T ss_dssp             ECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH--TSSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh--ccccE
Confidence            699999999999999998753 455556666666666677889999999999976432111  1111222222  57899


Q ss_pred             EEEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.. +. ..+..++..+...+.   ..|+++|+||+|+.+
T Consensus       112 ~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~  156 (228)
T 2qu8_A          112 ILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCN  156 (228)
T ss_dssp             EEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC
T ss_pred             EEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCC
Confidence            99998887632 33 233456666655432   279999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.59  E-value=9.9e-15  Score=118.02  Aligned_cols=114  Identities=18%  Similarity=0.185  Sum_probs=72.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhh-hcCC
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFL-LNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l-~~~~   75 (256)
                      +|.+|||||||+|+|++.. ...++...++|.....+.  .+ ..+.+|||||+++.....   ..+...+..++ ....
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (195)
T 1svi_A           29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREE  105 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC-CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhc
Confidence            5999999999999999986 333444444555444332  23 368999999988765432   22333333343 2246


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++++|++++. +.+..+..+++.+.+.     ..|+++|+||+|+.
T Consensus       106 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~  147 (195)
T 1svi_A          106 LKAVVQIVDLRH-APSNDDVQMYEFLKYY-----GIPVIVIATKADKI  147 (195)
T ss_dssp             EEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred             CCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence            699999988775 4667777777776652     27999999999985

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.57  E-value=7.8e-15  Score=125.24  Aligned_cols=112  Identities=11%  Similarity=0.135  Sum_probs=82.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-----CcHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-----VNYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-----~~~~~~~~i~~~l~~~~   75 (256)
                      +|.+|||||||+|+|+|.. +.++..+++|.........+++..+.+|||||+.+...     ..++.  ..+.++....
T Consensus         7 vG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~--i~~~~~~~~~   83 (256)
T 3iby_A            7 IGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQ--IAAQSVIDLE   83 (256)
T ss_dssp             EESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHH--HHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHH--HHHHHHhhCC
Confidence            5999999999999999986 46777888888888888888999999999999987643     11111  2233444478


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++++|++.+.   .+....+...+.+.     ..|+++|+||+|+.
T Consensus        84 ~d~vi~VvDas~---~~~~~~l~~~l~~~-----~~pvilv~NK~Dl~  123 (256)
T 3iby_A           84 YDCIINVIDACH---LERHLYLTSQLFEL-----GKPVVVALNMMDIA  123 (256)
T ss_dssp             CSEEEEEEEGGG---HHHHHHHHHHHTTS-----CSCEEEEEECHHHH
T ss_pred             CCEEEEEeeCCC---chhHHHHHHHHHHc-----CCCEEEEEEChhcC
Confidence            999999977663   13333444444433     27999999999974

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.57  E-value=2.1e-14  Score=116.05  Aligned_cols=114  Identities=15%  Similarity=0.154  Sum_probs=76.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... ....++.+.........+++  ..+.+|||||..........++         ..+|+
T Consensus        22 ~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~   91 (196)
T 3tkl_A           22 IGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY---------RGAHG   91 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHH---------TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHH---------hhCCE
Confidence            699999999999999987642 22223344444445556666  5789999999754432222222         68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD  126 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~  126 (256)
                      +++|+++++....+....++..+......+  .|+++|+||+|+.+.+
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~  137 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKK  137 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccccc
Confidence            999988876322233345666666665444  7899999999986433

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=115.44  Aligned_cols=110  Identities=14%  Similarity=0.075  Sum_probs=73.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... ....++.+.........+++  ..+.+|||||..+.......++         ..+|+
T Consensus        15 ~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~   84 (181)
T 3tw8_B           15 IGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYY---------RGTHG   84 (181)
T ss_dssp             ECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGG---------TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHh---------ccCCE
Confidence            699999999999999998653 22233344444445556677  6789999999765433322221         68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+.+...   ..|+++|+||+|+.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~  126 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDP  126 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCc
Confidence            9999888763222222345555655443   27899999999975

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.56  E-value=2.2e-14  Score=123.58  Aligned_cols=112  Identities=13%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-----CcHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-----VNYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-----~~~~~~~~i~~~l~~~~   75 (256)
                      +|.+|||||||+|+|+|.. +.++..+++|.........+.+..+.+|||||+.+...     ...+.  ..+.++....
T Consensus         9 vG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~--i~~~~~~~~~   85 (274)
T 3i8s_A            9 IGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ--IACHYILSGD   85 (274)
T ss_dssp             EECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHH--HHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHH--HHHHHHhhcC
Confidence            5999999999999999987 47788888888887777888889999999999988652     11111  1223334478


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++++|++.+.   .+....+...+.+.-     .|+++|+||+|+.
T Consensus        86 ~d~ii~VvD~~~---~~~~~~~~~~l~~~~-----~p~ivv~NK~Dl~  125 (274)
T 3i8s_A           86 ADLLINVVDASN---LERNLYLTLQLLELG-----IPCIVALNMLDIA  125 (274)
T ss_dssp             CSEEEEEEEGGG---HHHHHHHHHHHHHHT-----CCEEEEEECHHHH
T ss_pred             CCEEEEEecCCC---hHHHHHHHHHHHhcC-----CCEEEEEECccch
Confidence            999999976653   234445556665542     7999999999974

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=1.7e-14  Score=114.98  Aligned_cols=114  Identities=12%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.........++.+..........++.  .+.+|||||..+..       .....++  ..+|+
T Consensus        16 ~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~--~~~d~   86 (180)
T 2g6b_A           16 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYY--RDAHA   86 (180)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG--GGCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHc--cCCCE
Confidence            5999999999999999876532222233333333333455654  78999999965422       1122222  47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      +++|+++++....+....++..+......+  .|+++|+||+|+.+.
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHE  131 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcc
Confidence            999988875322222345566666654433  799999999998643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.55  E-value=6.5e-14  Score=112.80  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=78.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhh-hcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFL-LNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l-~~~~~   76 (256)
                      +|.+|||||||+|+|++......+...++|.......   .+..+.+|||||+.......   ..+......++ ....+
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (195)
T 3pqc_A           29 VGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSL  105 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTE
T ss_pred             ECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCc
Confidence            5999999999999999987555555555555443322   23467899999987654322   12222333333 23578


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|++.+. .....+..+++.+...     ..|+++|+||+|+.
T Consensus       106 ~~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~  146 (195)
T 3pqc_A          106 QMVFLLVDGRI-PPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKV  146 (195)
T ss_dssp             EEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred             eEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEChhcC
Confidence            99999987764 4667777777777665     27999999999985

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.55  E-value=6.6e-15  Score=134.81  Aligned_cols=119  Identities=21%  Similarity=0.264  Sum_probs=79.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|+|+|.....++..+++|.........++|..+.+|||||+.+.....   +.+ ..++.......+|
T Consensus       181 vG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~-~~~~~~~~~~~ad  259 (436)
T 2hjg_A          181 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKY-SVLRALKAIDRSE  259 (436)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHH-HHHHHHHHHHHCS
T ss_pred             EcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHH-HHHHHHHHHHhCC
Confidence            699999999999999999876677777888877666778899999999999997643211   111 1111100114689


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD  126 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~  126 (256)
                      ++|+|++++. ..+..+..++..+.+.     .+++++|+||+|+.+.+
T Consensus       260 ~~llv~D~~~-~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~  302 (436)
T 2hjg_A          260 VVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKD  302 (436)
T ss_dssp             EEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCC
T ss_pred             EEEEEEcCCc-CCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcc
Confidence            9999988875 5677777777766543     27999999999986433

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.55  E-value=1.8e-14  Score=113.43  Aligned_cols=111  Identities=12%  Similarity=0.015  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....... .+............+.  +..+.+|||||..+.......+.         ..+|+
T Consensus        12 ~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~---------~~~~~   81 (170)
T 1z0j_A           12 LGDTGVGKSSIMWRFVEDSFDPNI-NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYY---------RGSAA   81 (170)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCTTC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHH---------TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCCC-CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhC---------cCCCE
Confidence            599999999999999987632111 1111111222233344  36789999999854332222221         58899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+.......  .++++|+||+|+.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~  124 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLT  124 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccc
Confidence            999988875322223345666666653333  6899999999985

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.54  E-value=1.3e-14  Score=115.46  Aligned_cols=107  Identities=12%  Similarity=0.111  Sum_probs=74.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|++.... .+..++.+.........+++..+.+|||||..+......       .+  ...+|+++
T Consensus        14 ~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~--~~~~d~~i   83 (178)
T 2lkc_A           14 MGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------RG--AQVTDIVI   83 (178)
T ss_dssp             ESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------SS--CCCCCEEE
T ss_pred             ECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------HH--HhhCCEEE
Confidence            599999999999999997643 333334444444455677889999999999876543221       11  15799999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++ .........++.+..   .+  .|+++|+||+|+.
T Consensus        84 ~v~d~~~-~~~~~~~~~l~~~~~---~~--~p~ilv~nK~Dl~  120 (178)
T 2lkc_A           84 LVVAADD-GVMPQTVEAINHAKA---AN--VPIIVAINKMDKP  120 (178)
T ss_dssp             EEEETTC-CCCHHHHHHHHHHGG---GS--CCEEEEEETTTSS
T ss_pred             EEEECCC-CCcHHHHHHHHHHHh---CC--CCEEEEEECccCC
Confidence            9988775 344555555544432   22  7899999999985

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.54  E-value=6.6e-15  Score=135.55  Aligned_cols=115  Identities=21%  Similarity=0.244  Sum_probs=75.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC-cHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|...+.++..+++|.........+.+..+.+|||||+...... .+++......++  .++|++
T Consensus        29 vG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i  106 (456)
T 4dcu_A           29 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVI  106 (456)
T ss_dssp             ECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH--HHCSEE
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH--hhCCEE
Confidence            69999999999999999887777777888888888888888999999999998753322 233333333333  579999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |+|++... .++..+..+.+.+.+.     .+|+++|+||+|+.
T Consensus       107 l~VvD~~~-~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~  144 (456)
T 4dcu_A          107 IFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNT  144 (456)
T ss_dssp             EEEEESSS-CSCHHHHHHHHHHTTC-----CSCEEEEEECC---
T ss_pred             EEEEeCCC-CCChHHHHHHHHHHHc-----CCCEEEEEECccch
Confidence            99977554 5788888888777652     38999999999975

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.54  E-value=1.4e-14  Score=133.29  Aligned_cols=120  Identities=22%  Similarity=0.288  Sum_probs=84.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|+|||||+|+|++...+.++..+++|.........+++..+.+|||||+.+....   .+.+. .++..-....+|
T Consensus       201 vG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~-~~~~~~~~~~ad  279 (456)
T 4dcu_A          201 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYS-VLRALKAIDRSE  279 (456)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHH-HHHHHHHHHHCS
T ss_pred             ecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHH-HHHHHHHHhhCC
Confidence            59999999999999999887777887888887766677789999999999998764321   11111 111100114789


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG  127 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~  127 (256)
                      ++|+|++... .+++.+..++..+.+. +    +++++|+||+|+.+.+.
T Consensus       280 ~~llviD~~~-~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~  323 (456)
T 4dcu_A          280 VVAVVLDGEE-GIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDE  323 (456)
T ss_dssp             EEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCS
T ss_pred             EEEEEEeCCC-CcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCch
Confidence            9999987765 5788888888877763 2    79999999999864433

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.54  E-value=5e-14  Score=115.44  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=75.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... ....++.+.........+++  ..+.+|||||..+.......++         ..+|+
T Consensus        26 ~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~d~   95 (213)
T 3cph_A           26 IGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY---------RGAMG   95 (213)
T ss_dssp             ECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHH---------TTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHh---------ccCCE
Confidence            599999999999999987642 22223334444445556677  5789999999765443333222         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+......+  .|+++|+||+|+.
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~  138 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME  138 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence            999988875322222345666666655433  7899999999983

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.54  E-value=2.4e-14  Score=116.03  Aligned_cols=112  Identities=13%  Similarity=0.067  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT-VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~-~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++..... .....+.+...........+..+.+|||||..+.......++         ..+|++
T Consensus        29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~i   99 (192)
T 2fg5_A           29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYY---------RGSAAA   99 (192)
T ss_dssp             EECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHH---------TTCSEE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhh---------ccCCEE
Confidence            5999999999999999876321 121122222222222233456889999999765432222221         589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|+++++....+....++..+.+....+  .|+++|+||+|+.
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~  141 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLS  141 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccc
Confidence            99988875322233345666666654333  7999999999985

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.53  E-value=1e-13  Score=118.42  Aligned_cols=112  Identities=21%  Similarity=0.332  Sum_probs=81.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc-HHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|... .++.++++|..........++..+.+|||||..+..... ++.  ..+.++....+|++
T Consensus        11 vG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~--v~~~~~~~~~~d~i   87 (258)
T 3a1s_A           11 AGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEK--IARDYLLKGDADLV   87 (258)
T ss_dssp             ECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHH--HHHHHHHHSCCSEE
T ss_pred             ECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHH--HHHHHHhhcCCCEE
Confidence            59999999999999999875 467777888777777777888999999999998764322 211  11233333689999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++.+.  + +....+...+.+.     -.|+++|+||+|+.
T Consensus        88 i~V~D~t~--~-~~~~~~~~~l~~~-----~~pvilv~NK~Dl~  123 (258)
T 3a1s_A           88 ILVADSVN--P-EQSLYLLLEILEM-----EKKVILAMTAIDEA  123 (258)
T ss_dssp             EEEEETTS--C-HHHHHHHHHHHTT-----TCCEEEEEECHHHH
T ss_pred             EEEeCCCc--h-hhHHHHHHHHHhc-----CCCEEEEEECcCCC
Confidence            99977663  3 3333455555443     27999999999974

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.53  E-value=2.6e-14  Score=113.46  Aligned_cols=112  Identities=15%  Similarity=0.100  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... ....++.+.........+++  ..+.+|||||..+.......+   +      ..+|+
T Consensus        20 ~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~---~------~~~d~   89 (179)
T 2y8e_A           20 LGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY---I------RDSTV   89 (179)
T ss_dssp             EESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHH---H------HTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHH---h------cCCCE
Confidence            599999999999999976542 22222333334444455665  478999999975433222222   2      47999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........++..+....+.+  .|+++|+||+|+.+
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~  133 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSD  133 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccc
Confidence            999988875322223345556665554433  78999999999853

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.53  E-value=3.9e-14  Score=111.51  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... ....++.+.........+++  ..+.+|||||..+.......++         ..+|+
T Consensus         9 ~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~---------~~~d~   78 (170)
T 1g16_A            9 IGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY---------RGAMG   78 (170)
T ss_dssp             EESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHH---------TTEEE
T ss_pred             ECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHh---------ccCCE
Confidence            599999999999999987642 22222333333334445554  4789999999765543333322         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+.+....+  .|+++|+||+|+.
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~  121 (170)
T 1g16_A           79 IILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME  121 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCC
Confidence            999988875322223345666666655433  7999999999983

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.53  E-value=8.1e-15  Score=134.21  Aligned_cols=116  Identities=21%  Similarity=0.241  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC-cHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|...+.++..+++|.........+++..+.+|||||+...... ...+......++  .++|++
T Consensus         9 vG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i   86 (436)
T 2hjg_A            9 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVI   86 (436)
T ss_dssp             ECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--HHCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence            69999999999999999887777778888888888888889999999999999743211 122222222222  579999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      |+|++... ..+..+..+.+.+.+.     .+|+++|+||+|+.+
T Consensus        87 l~vvD~~~-~~~~~d~~~~~~l~~~-----~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           87 IFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNTE  125 (436)
T ss_dssp             EEEEETTT-CSCHHHHHHHHHHTTC-----CSCEEEEEECCCC--
T ss_pred             EEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCcc
Confidence            99987765 4677777666655432     279999999999853

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.53  E-value=7.1e-14  Score=110.60  Aligned_cols=113  Identities=18%  Similarity=0.280  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|+|... .++..+++|.........+++..+.+|||||..+...... .......++...++|+++
T Consensus         9 vG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~~~~~~~i   86 (165)
T 2wji_A            9 IGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIINEKPDLVV   86 (165)
T ss_dssp             ECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHHHCCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhcCCCCEEE
Confidence            69999999999999999753 3454555555555555667889999999999986532211 001112222224789999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++..+  + +....++..+.+.     ..|+++|+||+|+.
T Consensus        87 ~v~D~~~--~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~  121 (165)
T 2wji_A           87 NIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA  121 (165)
T ss_dssp             EEEETTC--H-HHHHHHHHHHHHT-----TCCEEEEEECHHHH
T ss_pred             EEecCCc--h-hHhHHHHHHHHhc-----CCCEEEEEEchHhc
Confidence            9977663  2 2333455555442     27999999999973

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.53  E-value=6.1e-14  Score=111.76  Aligned_cols=113  Identities=12%  Similarity=0.068  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....... .++.+.........++  +..+.+|||||..........+       +  ..+|+
T Consensus        18 ~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~--~~~d~   87 (181)
T 2efe_B           18 LGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY-------Y--RGAAA   87 (181)
T ss_dssp             ECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHH-------H--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHH-------h--ccCCE
Confidence            599999999999999987643221 1222222222333444  4578999999975433222222       1  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      +++|+++++....+....++..+......+  .|+++|+||+|+.+.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~  132 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDA  132 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc
Confidence            999988875322233455666666654333  789999999998543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.53  E-value=6.1e-14  Score=110.17  Aligned_cols=111  Identities=15%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++..... ...++.+.........+++  ..+.+|||||..+.......++         ..+|+
T Consensus        11 ~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~d~   80 (168)
T 1z2a_A           11 VGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYY---------RGAQA   80 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHH---------TTCCE
T ss_pred             ECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHh---------cCCCE
Confidence            5999999999999999875421 1112222333334444554  4789999999765443333322         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....++..+.....   ..|+++|+||+|+.+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  123 (168)
T 1z2a_A           81 CVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLD  123 (168)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCc
Confidence            9999888753212223345555555442   279999999999853

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.53  E-value=6.3e-14  Score=111.91  Aligned_cols=113  Identities=19%  Similarity=0.205  Sum_probs=73.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++...  ...+.+++..........++  ..+.+|||||..+.......+.         ..+|+
T Consensus        12 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~~~   80 (181)
T 3t5g_A           12 LGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS---------IDING   80 (181)
T ss_dssp             EESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGT---------TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHH---------hcCCE
Confidence            59999999999999996652  33344444444444555666  4668999999876543322221         57999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      +++|+++++....+.-..++..+.+.... ...|+++|+||+|+...
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  126 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHME  126 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhc
Confidence            99998887532222333455555554432 12789999999998533

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.53  E-value=6.2e-14  Score=114.62  Aligned_cols=112  Identities=14%  Similarity=0.113  Sum_probs=73.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... ....++.+.........+++  ..+.+|||||..+.......+       +  ..+|+
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-------~--~~~d~   83 (206)
T 2bcg_Y           14 IGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY-------Y--RGSHG   83 (206)
T ss_dssp             EESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGG-------G--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHh-------c--cCCCE
Confidence            599999999999999987642 22222333333334455565  478999999987654332222       1  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........++..+.......  .++++|+||+|+.+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~  127 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKD  127 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence            999988875322223334556666554333  78999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.52  E-value=7.2e-14  Score=109.81  Aligned_cols=112  Identities=16%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++..... ...+..+.........+++  ..+.+|||||..+.....       ..++  ..+|+
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~--~~~d~   78 (170)
T 1ek0_A            9 LGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA-------PXYY--RNAQA   78 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH-------HHHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhh-------hhhh--ccCcE
Confidence            5999999999999999876421 1112222222223334444  478999999975432211       1122  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........++..+.+..+.+  .|+++|+||+|+.+
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~  122 (170)
T 1ek0_A           79 ALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQ  122 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             EEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCccc
Confidence            999988875322223344556666554433  78999999999853

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.52  E-value=2.3e-14  Score=112.96  Aligned_cols=112  Identities=17%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.... ....++.+.........+++  ..+.+|||||..+...       ....++  ..+|+
T Consensus        12 ~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~~~d~   81 (170)
T 1z08_A           12 LGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIYY--RDSNG   81 (170)
T ss_dssp             ECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSS--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHHh--ccCCE
Confidence            599999999999999987532 12222223333333444444  4678999999654321       111112  58899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....+++.+.+..+.+  .|+++|+||+|+.+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~  125 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEK  125 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECccccc
Confidence            999988875322223345556666654443  78999999999853

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.52  E-value=3.3e-14  Score=111.76  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++........ +..+.........++  +..+.+|||||..+......       .++  ..+|+
T Consensus        12 ~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~~--~~~d~   81 (170)
T 1r2q_A           12 LGESAVGKSSLVLRFVKGQFHEFQE-STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP-------MYY--RGAQA   81 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCC-CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHH-------HHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhH-------Hhc--cCCCE
Confidence            5999999999999999865422211 111111112223333  56789999999754322111       112  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+.+.....  .++++|+||+|+.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~  124 (170)
T 1r2q_A           82 AIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLA  124 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCc
Confidence            999988875321123344556665554433  6899999999985

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.52  E-value=2.3e-14  Score=132.48  Aligned_cols=113  Identities=23%  Similarity=0.195  Sum_probs=58.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.++....+..  .++... ....+|++
T Consensus       239 vG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~v  316 (476)
T 3gee_A          239 AGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRMKMAEADLI  316 (476)
T ss_dssp             ECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CCCSSCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHhhcccCCEE
Confidence            699999999999999999877788888888888777788899999999999997643211111  011111 22689999


Q ss_pred             EEEEeCCCCCCCH----HHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDD----LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~----~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |+|++.+. ..+.    .+..+++.    +.   ..|+++|+||+|+.
T Consensus       317 l~VvD~s~-~~s~~~~~~~~~~l~~----l~---~~piIvV~NK~Dl~  356 (476)
T 3gee_A          317 LYLLDLGT-ERLDDELTEIRELKAA----HP---AAKFLTVANKLDRA  356 (476)
T ss_dssp             EEEEETTT-CSSGGGHHHHHHHHHH----CT---TSEEEEEEECTTSC
T ss_pred             EEEEECCC-CcchhhhHHHHHHHHh----cC---CCCEEEEEECcCCC
Confidence            99988876 3333    33333332    22   27999999999985

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.52  E-value=1.1e-13  Score=111.83  Aligned_cols=107  Identities=14%  Similarity=0.093  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--------------------------------------
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--------------------------------------   42 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--------------------------------------   42 (256)
                      +|.+|||||||+|+|++.... ....++.+.........+++                                      
T Consensus        13 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (208)
T 3clv_A           13 LGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLC   91 (208)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTC
T ss_pred             ECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccc
Confidence            599999999999999997642 11112222222223333333                                      


Q ss_pred             -eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           43 -FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        43 -~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                       ..+.+|||||..+.......+       +  ..+|++++|+++++.........++..+.+..+    .|+++|+||+|
T Consensus        92 ~~~~~i~Dt~G~~~~~~~~~~~-------~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~piilv~NK~D  158 (208)
T 3clv_A           92 NIKFDIWDTAGQERYASIVPLY-------Y--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIIILVANKID  158 (208)
T ss_dssp             EEEEEEEECTTGGGCTTTHHHH-------H--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEEEEEECTT
T ss_pred             eeEEEEEECCCcHHHHHHHHHH-------h--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEEEEEECCC
Confidence             788999999976543322221       2  589999999887753211222345555555433    79999999999

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.52  E-value=4e-14  Score=112.11  Aligned_cols=115  Identities=17%  Similarity=0.080  Sum_probs=64.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++..........+.+  .......+++.  .+.+|||||.......   .  ....++  ...|+
T Consensus        10 ~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~--~~~~~~--~~~~~   80 (175)
T 2nzj_A           10 LGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDKS---W--SQESCL--QGGSA   80 (175)
T ss_dssp             ECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC-------C---H--HHHHTT--TSCSE
T ss_pred             ECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccchh---h--hHHhhc--ccCCE
Confidence            699999999999999998754433332222  22333455554  6789999998642111   1  111122  57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      +++|+++++....+....++..+.+... ....|+++|+||+|+.+.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~  126 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC  126 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence            9999888863211222345555554321 112789999999998543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.52  E-value=1.5e-14  Score=126.29  Aligned_cols=113  Identities=15%  Similarity=0.264  Sum_probs=81.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCC-CCCcCcHHHHHHHHHhh--hcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV-EAGYVNYQALELIKGFL--LNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~-~~~~~~~~~~~~i~~~l--~~~~~d   77 (256)
                      +|.+|||||||+|+|+|...+.++..+++|..........++.++.++||||+. ...   ....+.+....  ....+|
T Consensus        14 vG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~---~~l~~~~~~~~~~~l~~~D   90 (301)
T 1ega_A           14 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK---RAINRLMNKAASSSIGDVE   90 (301)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH---HHHHHHHTCCTTSCCCCEE
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch---hhHHHHHHHHHHHHHhcCC
Confidence            699999999999999999877667666677666555566788899999999985 211   11111111111  125789


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|++.+.  ++..+..+++.+...     ..|.++|+||+|+.
T Consensus        91 ~vl~Vvd~~~--~~~~~~~i~~~l~~~-----~~P~ilvlNK~D~~  129 (301)
T 1ega_A           91 LVIFVVEGTR--WTPDDEMVLNKLREG-----KAPVILAVNKVDNV  129 (301)
T ss_dssp             EEEEEEETTC--CCHHHHHHHHHHHSS-----SSCEEEEEESTTTC
T ss_pred             EEEEEEeCCC--CCHHHHHHHHHHHhc-----CCCEEEEEECcccC
Confidence            9999977764  778877777666532     27999999999984

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.52  E-value=7.7e-14  Score=110.91  Aligned_cols=111  Identities=22%  Similarity=0.220  Sum_probs=72.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++...  .+...+++.........+++  ..+.+|||||..+.......++         ..+|+
T Consensus        15 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~---------~~~d~   83 (181)
T 2fn4_A           15 VGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM---------RAGHG   83 (181)
T ss_dssp             EECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHH---------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH---------hhCCE
Confidence            59999999999999998753  33444444444444455665  4678999999876543333222         36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcC-CcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g-~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........++..+.+... .+  .|+++|+||+|+.+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~  128 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLES  128 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGG
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccccc
Confidence            9999888763211222344444433322 23  78999999999853

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.51  E-value=3e-14  Score=112.21  Aligned_cols=113  Identities=20%  Similarity=0.142  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....  ....++...........++  ..+.+|||||..+..   ......+      ..+|+
T Consensus         9 ~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~------~~~~~   77 (172)
T 2erx_A            9 FGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---AMQRLSI------SKGHA   77 (172)
T ss_dssp             ECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---HHHHHHH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhH---HHHHHhc------ccCCE
Confidence            599999999999999987532  1111222222222223333  468999999986532   1111122      36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....++..+.+..+.....|+++|+||+|+.+
T Consensus        78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~  123 (172)
T 2erx_A           78 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  123 (172)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence            9999888753222233455666666543222379999999999853

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.51  E-value=5e-14  Score=113.92  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++........ ++.+.........+  .+..+.+|||||..+.......++         ..+|+
T Consensus        31 ~G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~  100 (193)
T 2oil_A           31 IGESGVGKTNLLSRFTRNEFSHDSR-TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY---------RGAVG  100 (193)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCSSCC-CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHH---------TTCCE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHh---------ccCCE
Confidence            6999999999999999876432221 11111222222333  346789999999876543322221         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........++..+......  ..++++|+||+|+..
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~  144 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQ  144 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCccc
Confidence            99998887522112223455555544332  378999999999853

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.51  E-value=4.4e-14  Score=111.03  Aligned_cols=112  Identities=13%  Similarity=0.007  Sum_probs=59.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++......+...+++..   ....++  +..+.+|||||..........++         ...|+
T Consensus         8 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~---------~~~~~   75 (166)
T 3q72_A            8 LGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLPGHCM---------AMGDA   75 (166)
T ss_dssp             EESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC------------------------CCE
T ss_pred             ECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhhhhhhh---------hhCCE
Confidence            59999999999999998765444433333321   223344  44678999999765432222211         57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      +++|+++++....+....++..+.+.... ...|+++|+||+|+.+.
T Consensus        76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  121 (166)
T 3q72_A           76 YVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRS  121 (166)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccccccc
Confidence            99998888632222333444555443211 12799999999998643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.51  E-value=4.1e-14  Score=112.27  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|+|++....  ....++ +.........+++  ..+.+|||||..+..   ......+      ..+|
T Consensus        21 ~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~------~~~d   89 (179)
T 1z0f_A           21 IGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR---AVTRSYY------RGAA   89 (179)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC--SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---HHHHHHH------HTCS
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh---hhHHHHh------ccCC
Confidence            599999999999999987642  222222 2222223334444  578999999965432   1222222      4789


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+....++..+......+  .|+++|+||+|+.
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~  133 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLE  133 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccc
Confidence            9999988875322223345556666654443  7899999999985

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.51  E-value=9.2e-14  Score=112.36  Aligned_cols=111  Identities=15%  Similarity=0.111  Sum_probs=71.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++........ ++.+.........+++  ..+.+|||||..+.......++         ..+|+
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~   96 (191)
T 2a5j_A           27 IGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY---------RGAAG   96 (191)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH---------TTCSE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh---------ccCCE
Confidence            5999999999999999876432221 2222233333445555  5789999999765543333322         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+......+  .++++|+||+|+.
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~  139 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLE  139 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccC
Confidence            999988875322222244556665554333  7899999999985

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.51  E-value=3.3e-14  Score=111.38  Aligned_cols=112  Identities=16%  Similarity=0.195  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++.........+++  ..+.+|||||..+...       ....++  ..+|+
T Consensus        10 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~--~~~d~   78 (168)
T 1u8z_A           10 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-------IRDNYF--RSGEG   78 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHH-------HHHHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHH-------HHHHHh--hcCCE
Confidence            59999999999999998763  22333333333333445555  4789999999754321       111222  37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....++..+.+.... ...|+++|+||+|+..
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  123 (168)
T 1u8z_A           79 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLED  123 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccc
Confidence            99998887532222334455556555432 1279999999999853

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.50  E-value=7.9e-14  Score=109.11  Aligned_cols=111  Identities=15%  Similarity=0.107  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++....  ....+++.........+++.  .+.+|||||..+...    ..   ..++  ...|+
T Consensus         9 ~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~---~~~~--~~~~~   77 (167)
T 1kao_A            9 LGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS----MR---DLYI--KNGQG   77 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH----HH---HHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH----HH---HHHh--ccCCE
Confidence            699999999999999987542  22233333333344455554  488999999764321    11   1111  36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+.+.... ...|+++|+||+|+.
T Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~  121 (167)
T 1kao_A           78 FILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLE  121 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGG
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccc
Confidence            99998887532222233445555554331 137899999999985

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.50  E-value=6.7e-14  Score=115.43  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=72.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEe-eeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR-SKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~-~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|+|++........ ...+........ ..++  ..+.+|||||..........+.         ..+|
T Consensus        17 vG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~d   86 (218)
T 4djt_A           17 IGDGGVGKTTYINRVLDGRFEKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYY---------IGAS   86 (218)
T ss_dssp             ECCTTSSHHHHHCBCTTCSTTCEEE-TTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHH---------TTCS
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCC-CccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHh---------hcCC
Confidence            6999999999999999876421111 111111111111 1222  6789999999876554444332         5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++.........++..+....+.+  .++++|+||+|+.
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~  130 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIK  130 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence            9999988886332233345667777666554  7999999999985

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.50  E-value=1.8e-13  Score=117.35  Aligned_cols=114  Identities=17%  Similarity=0.224  Sum_probs=81.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|+|... .++..+++|.........+++..+.+|||||+.+........ ...+.++....+|+++
T Consensus         9 vG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~~d~vi   86 (271)
T 3k53_A            9 VGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE-LIARNFILDGNADVIV   86 (271)
T ss_dssp             EECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH-HHHHHHHHTTCCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH-HHHHHhhhccCCcEEE
Confidence            59999999999999999875 677777788877777788899999999999998754332211 1223344457899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++.+.  . +....+...+.+. +.   .|+++|+||+|+.
T Consensus        87 ~v~D~~~--~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~  122 (271)
T 3k53_A           87 DIVDSTC--L-MRNLFLTLELFEM-EV---KNIILVLNKFDLL  122 (271)
T ss_dssp             EEEEGGG--H-HHHHHHHHHHHHT-TC---CSEEEEEECHHHH
T ss_pred             EEecCCc--c-hhhHHHHHHHHhc-CC---CCEEEEEEChhcC
Confidence            9976653  2 2333344444433 21   6899999999974

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.50  E-value=2.3e-14  Score=114.70  Aligned_cols=112  Identities=13%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++... .....++.+.........+++  ..+.+|||||..+....       ...++  ..+|+
T Consensus        14 ~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~--~~~d~   83 (183)
T 2fu5_C           14 IGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYY--RGAMG   83 (183)
T ss_dssp             ECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTT--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh-------HHHHH--hcCCE
Confidence            59999999999999997653 111112222333334455666  67899999997543211       11122  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....++..+.+....+  .|+++|+||+|+.+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~  127 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVND  127 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCc
Confidence            999988875321123334556666554333  79999999999853

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.50  E-value=1e-14  Score=134.33  Aligned_cols=113  Identities=22%  Similarity=0.256  Sum_probs=75.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh-hcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-LNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.++....+..  .+++.. ....+|++
T Consensus       230 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~v  307 (462)
T 3geh_A          230 VGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQAANTADLV  307 (462)
T ss_dssp             EECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CCCCSCSEE
T ss_pred             EcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhhhhhcCCEE
Confidence            599999999999999998776777778888777666677899999999999997643211111  111111 22679999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |+|++.+. ..+..+..+++.+..       +|+++|+||+|+.
T Consensus       308 l~VvD~s~-~~~~~~~~i~~~l~~-------~piivV~NK~Dl~  343 (462)
T 3geh_A          308 LLTIDAAT-GWTTGDQEIYEQVKH-------RPLILVMNKIDLV  343 (462)
T ss_dssp             EEEEETTT-CSCHHHHHHHHHHTT-------SCEEEEEECTTSS
T ss_pred             EEEeccCC-CCCHHHHHHHHhccC-------CcEEEEEECCCCC
Confidence            99988875 566777666665532       6999999999985

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.50  E-value=7.4e-14  Score=112.63  Aligned_cols=111  Identities=13%  Similarity=0.088  Sum_probs=70.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....... .+..+...........  +..+.+|||||..+.......       ++  ..+|+
T Consensus        28 vG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~   97 (189)
T 2gf9_A           28 IGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTA-------YY--RGAMG   97 (189)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCSC-CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGG-------GG--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCc-CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHH-------hc--cCCCE
Confidence            699999999999999987642211 1122222222233333  457899999997654433221       12  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+.+....+  .|+++|+||+|+.
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~  140 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLE  140 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence            999988875322223344566666554333  7999999999985

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.49  E-value=3.3e-14  Score=113.94  Aligned_cols=111  Identities=15%  Similarity=0.155  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++..... ...+..+.........+++  ..+.+|||||..+.       ......++  ..+|+
T Consensus        16 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~   85 (186)
T 2bme_A           16 IGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYY--RGAAG   85 (186)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTS--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHH--hcCCE
Confidence            5999999999999999876422 2122233333334445566  57899999996432       11222222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+......+  .|+++|+||+|+.
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~  128 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLD  128 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccc
Confidence            999988875322222344555565554433  7999999999985

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.49  E-value=4.6e-14  Score=114.42  Aligned_cols=111  Identities=15%  Similarity=0.162  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++...... ..+..+.........+++  ..+.+|||||..+..   ...    ..++  ..+|+
T Consensus        32 vG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---~~~----~~~~--~~~d~  101 (192)
T 2il1_A           32 IGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN---SIT----SAYY--RSAKG  101 (192)
T ss_dssp             ECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH---HHH----HHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH---HHH----HHHh--cCCCE
Confidence            59999999999999998764221 122223333344455565  478999999964321   111    2222  37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+......+  .++++|+||+|+.
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~  144 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCE  144 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccc
Confidence            999988875321122234555665554433  7899999999985

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.49  E-value=3.5e-14  Score=131.40  Aligned_cols=109  Identities=23%  Similarity=0.388  Sum_probs=83.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCC-CCCcCc-----HHHHHHHHHhhhcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV-EAGYVN-----YQALELIKGFLLNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~-~~~~~~-----~~~~~~i~~~l~~~   74 (256)
                      +|.+|||||||+|+|++.+.+.++.++++|..+......++|.++.+|||||+. ++....     ......+      .
T Consensus       249 vG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~------~  322 (482)
T 1xzp_A          249 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI------E  322 (482)
T ss_dssp             ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH------H
T ss_pred             ECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh------h
Confidence            699999999999999998877788888888888777788899999999999998 543211     2233334      3


Q ss_pred             CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+|++|+|+++++ ..+.++..+++.+    .   .+|+++|+||+|+.
T Consensus       323 ~aD~vl~VvD~s~-~~s~~~~~il~~l----~---~~piivV~NK~DL~  363 (482)
T 1xzp_A          323 KADIVLFVLDASS-PLDEEDRKILERI----K---NKRYLVVINKVDVV  363 (482)
T ss_dssp             HCSEEEEEEETTS-CCCHHHHHHHHHH----T---TSSEEEEEEECSSC
T ss_pred             cccEEEEEecCCC-CCCHHHHHHHHHh----c---CCCEEEEEECcccc
Confidence            7999999988765 3455565555443    2   27999999999985

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.49  E-value=6.8e-14  Score=109.78  Aligned_cols=111  Identities=16%  Similarity=0.114  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++.........++  +..+.+|||||..+.......   .+      ..+|+
T Consensus         9 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~---~~------~~~d~   77 (167)
T 1c1y_A            9 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL---YM------KNGQG   77 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHH---HH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHH---Hh------ccCCE
Confidence            59999999999999998653  2222333332222333344  457899999998654322221   12      36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+.+.... ...|+++|+||+|+.
T Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~  121 (167)
T 1c1y_A           78 FALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE  121 (167)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccc
Confidence            99998887532112223455555554321 127899999999985

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.49  E-value=1e-13  Score=110.79  Aligned_cols=111  Identities=16%  Similarity=0.194  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++...  .....+++.........+++  ..+.+|||||..+..    ...   ..++  ..+|+
T Consensus        24 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~---~~~~--~~~d~   92 (187)
T 2a9k_A           24 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----AIR---DNYF--RSGEG   92 (187)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----HHH---HHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH----HHH---HHHh--ccCCE
Confidence            59999999999999998763  23333444433444445555  478999999976432    111   1122  37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+...... ...|+++|+||+|+.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~  136 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLE  136 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence            99998887532222334555566555432 127899999999985

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.49  E-value=1.3e-13  Score=126.29  Aligned_cols=111  Identities=23%  Similarity=0.357  Sum_probs=76.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---------cHHHHHHHHHhh
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---------NYQALELIKGFL   71 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---------~~~~~~~i~~~l   71 (256)
                      +|++|||||||+|+|+|...+.++..+++|..+......++|..+.+|||||+......         .......+    
T Consensus       186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i----  261 (439)
T 1mky_A          186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI----  261 (439)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH----
T ss_pred             ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH----
Confidence            69999999999999999987678888888887777777889999999999998542211         11122223    


Q ss_pred             hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           72 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        72 ~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                        ..+|++++|+++.. ..+..+..+.+.+.+. +    +++++|+||+|+.
T Consensus       262 --~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~-~----~~~ilv~NK~Dl~  305 (439)
T 1mky_A          262 --EKADVVVIVLDATQ-GITRQDQRMAGLMERR-G----RASVVVFNKWDLV  305 (439)
T ss_dssp             --HHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGS
T ss_pred             --hhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECccCC
Confidence              36899999977764 4566666666655543 2    7999999999985

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=112.46  Aligned_cols=112  Identities=16%  Similarity=0.173  Sum_probs=72.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++...  ...+.+++.........+++.  .+.+|||||..+...    ..   ..++  ..+|+
T Consensus        20 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~---~~~~--~~~~~   88 (206)
T 2bov_A           20 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA----IR---DNYF--RSGEG   88 (206)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH----HH---HHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHH----HH---HHHH--hhCCE
Confidence            59999999999999998763  233334444443444555654  789999999765321    11   1112  36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........++..+...... ...|+++|+||+|+.+
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  133 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLED  133 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccc
Confidence            99998887532222334455566555431 1279999999999853

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.49  E-value=1.2e-13  Score=111.29  Aligned_cols=113  Identities=12%  Similarity=0.109  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....... .++.+.........+++  ..+.+|||||..+...      .....++  ..+|+
T Consensus        26 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~~d~   96 (189)
T 1z06_A           26 IGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYY--RNVHA   96 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHH--TTCCE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHHh--cCCCE
Confidence            599999999999999987542211 12222233334445555  5789999999642210      1122222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+.+.... ...++++|+||+|+.
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~  140 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLR  140 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence            99998887522112234455666665421 137899999999985

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.48  E-value=6.9e-14  Score=114.22  Aligned_cols=111  Identities=15%  Similarity=0.102  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....... .++.+.........+++  ..+.+|||||..+.......+       +  ..+|+
T Consensus        31 ~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~-------~--~~~d~  100 (200)
T 2o52_A           31 IGSAGTGKSCLLHQFIENKFKQDS-NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY-------Y--RGAAG  100 (200)
T ss_dssp             EESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHH-------H--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCCCccC-CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHH-------h--ccCCE
Confidence            599999999999999987642211 22223233334445566  688999999964332222222       1  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+......+  .|+++|+||+|+.
T Consensus       101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~  143 (200)
T 2o52_A          101 ALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLD  143 (200)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcc
Confidence            999988875321122344555555544333  7899999999984

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.48  E-value=1.7e-13  Score=109.71  Aligned_cols=111  Identities=20%  Similarity=0.165  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeE--EEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++...  .....+++..........++..  +.+|||||..+.......++         ..+|+
T Consensus        10 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~~~   78 (189)
T 4dsu_A           10 VGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM---------RTGEG   78 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHH---------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHH---------hcCCE
Confidence            69999999999999998763  3333444444444455566654  67899999776543333222         36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+...... ...|+++|+||+|+.
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~  122 (189)
T 4dsu_A           79 FLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLP  122 (189)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCc
Confidence            99998888632222334455555554322 237899999999985

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.48  E-value=8.6e-14  Score=110.59  Aligned_cols=113  Identities=19%  Similarity=0.120  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC---eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG---FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g---~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|+|++..... ...++.+.........+++   ..+.+|||||..........++         ..+|
T Consensus        12 ~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~---------~~~d   81 (178)
T 2hxs_A           12 LGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYI---------YGAQ   81 (178)
T ss_dssp             ECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHH---------TTCS
T ss_pred             ECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHH---------hhCC
Confidence            5999999999999999875321 1111222333444555655   6899999999865443322221         5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+.-..+++.+.+........+ +++|+||+|+.
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~  128 (178)
T 2hxs_A           82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE  128 (178)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence            99999888753211222345555555322111134 89999999985

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=111.58  Aligned_cols=112  Identities=9%  Similarity=0.086  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|++...+... .. .|.........+++..+.+|||||..+......       .++  ..+|+++
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~--~~~d~ii   95 (190)
T 2h57_A           27 LGLDNSGKTTIINKLKPSNAQSQN-IL-PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWE-------HYY--KEGQAII   95 (190)
T ss_dssp             EECTTSSHHHHHHHTSCGGGCCSS-CC-CCSSEEEEEEECSSCEEEEEEECCSTTTGGGGG-------GGG--GGCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCC-cC-CccceeEEEEEECCEEEEEEECCCCHHHHHHHH-------HHH--hcCCEEE
Confidence            599999999999999998632222 22 233345556677889999999999765432211       122  5789999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++.........++..+.+.... ....++++|+||+|+.
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  139 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR  139 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence            998877521111222333333333211 0137999999999985

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.48  E-value=4e-14  Score=128.95  Aligned_cols=115  Identities=19%  Similarity=0.300  Sum_probs=77.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe-EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|+|||||+|+|++...+.++...++|..+......+.+. .+.+|||||+.+.........+....++  ..+|++
T Consensus        40 vG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~v  117 (423)
T 3qq5_A           40 AGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCG  117 (423)
T ss_dssp             ECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEE
Confidence            5999999999999999998766677777777777777777765 8999999999886543222112222222  589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      |+|++.   ...+.+..+++.+.+.-     .|+++|+||+|+...
T Consensus       118 llVvD~---~~~~~~~~~l~~l~~~~-----~piIvV~NK~Dl~~~  155 (423)
T 3qq5_A          118 ILVTDS---APTPYEDDVVNLFKEME-----IPFVVVVNKIDVLGE  155 (423)
T ss_dssp             EEECSS---SCCHHHHHHHHHHHHTT-----CCEEEECCCCTTTTC
T ss_pred             EEEEeC---CChHHHHHHHHHHHhcC-----CCEEEEEeCcCCCCc
Confidence            999544   56677888888887762     799999999998543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.47  E-value=1.3e-13  Score=108.66  Aligned_cols=109  Identities=12%  Similarity=0.096  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++++.....   .. .|.........+++..+.+|||||..+.....       ..++  ..+|+++
T Consensus        13 ~G~~~~GKssl~~~l~~~~~~~---~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~--~~~d~ii   79 (171)
T 1upt_A           13 LGLDGAGKTTILYRLQVGEVVT---TI-PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYW-------RCYY--SNTDAVI   79 (171)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCC---CC-CCSSEEEEEEEETTEEEEEEEECCCGGGGGGG-------GGGC--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC---cC-CcCccceEEEEECCEEEEEEECCCChhhhHHH-------HHHh--ccCCEEE
Confidence            5999999999999999876421   11 22234445566788999999999986432111       1222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+..... ....|+++|+||+|+.
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  121 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDME  121 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCc
Confidence            99888753211222233333322211 0137999999999985

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.2e-13  Score=114.63  Aligned_cols=111  Identities=13%  Similarity=0.076  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....... .++.+.........+++  ..+.+|||||..........++         ..+|+
T Consensus        19 ~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~   88 (223)
T 3cpj_B           19 IGDSGVGKSNLLSRFTKNEFNMDS-KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYY---------RGAVG   88 (223)
T ss_dssp             ESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGT---------TTCCE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHh---------ccCCE
Confidence            699999999999999987643222 12222233334455666  5789999999765433222221         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+......+  .|+++|+||+|+.
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~  131 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLA  131 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGG
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccc
Confidence            999988775322223334566666554333  7899999999985

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.47  E-value=1.2e-13  Score=110.93  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++++...   ....+ |.........+++..+.+|||||..+.       ......++  ..+|+++
T Consensus        24 ~G~~~~GKssl~~~l~~~~~---~~~~~-t~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~--~~~d~ii   90 (186)
T 1ksh_A           24 LGLDNAGKTTILKKFNGEDV---DTISP-TLGFNIKTLEHRGFKLNIWDVGGQKSL-------RSYWRNYF--ESTDGLI   90 (186)
T ss_dssp             ECSTTSSHHHHHHHHTTCCC---SSCCC-CSSEEEEEEEETTEEEEEEEECCSHHH-------HTTGGGGC--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCC---Ccccc-cCccceEEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cCCCEEE
Confidence            59999999999999998762   22222 223444456678899999999997431       11112222  6899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  132 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLP  132 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCC
Confidence            99888753211222233333333211 1127999999999985

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.47  E-value=3.3e-13  Score=107.91  Aligned_cols=112  Identities=18%  Similarity=0.186  Sum_probs=71.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeE--EEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++...  .....+++..........++..  +.+|||||..+.......++         ..+|+
T Consensus        24 ~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~---------~~~d~   92 (183)
T 3kkq_A           24 VGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYM---------RTGDG   92 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHH---------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHH---------hcCCE
Confidence            69999999999999998643  2233333333334445566654  56699999765443332222         36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....++..+.+..... ..|+++|+||+|+.+
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~  137 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH  137 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCCEEEEEECTTCST
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEECCCchh
Confidence            999988886322222344555554433221 268999999999854

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.47  E-value=3.7e-13  Score=108.31  Aligned_cols=109  Identities=8%  Similarity=0.008  Sum_probs=68.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|++........    |.........+++..+.+|||||..+.......++         ..+|+++
T Consensus        22 ~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~ii   88 (187)
T 1zj6_A           22 VGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYY---------TNTEFVI   88 (187)
T ss_dssp             EESTTSSHHHHHHHHHTTSCEEEEC----CSCSSCEEEEETTEEEEEEECCC----CGGGHHHH---------TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCcC----CCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh---------cCCCEEE
Confidence            5999999999999999876432221    11122334556789999999999865443322222         5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  130 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK  130 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTST
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCc
Confidence            99888763322233344444443211 1127999999999985

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.47  E-value=1e-13  Score=112.84  Aligned_cols=115  Identities=14%  Similarity=0.147  Sum_probs=48.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEEEeeeC----CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKG----GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~~~~~~----g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (256)
                      +|.+|||||||+|+|++......+...+++. ........++    ...+.+|||||..+       +......++  ..
T Consensus        26 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~--~~   96 (208)
T 2yc2_C           26 VGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL-------YKEQISQYW--NG   96 (208)
T ss_dssp             C----------------------------------CEEEECTTSSEEEEEEEEETTTTHH-------HHHHHSTTC--CC
T ss_pred             ECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH-------HHHHHHHHH--hh
Confidence            6999999999999999983222333333332 2333344555    35789999999842       222222222  58


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~~  124 (256)
                      +|++++|+++++....+....++..+....+. ....|+++|+||+|+.+
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            99999998887532223334566666665441 01279999999999853

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.47  E-value=8.9e-14  Score=113.43  Aligned_cols=112  Identities=17%  Similarity=0.232  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....  ....+++..........  .+..+.+|||||..+.......++         ..+|+
T Consensus        30 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---------~~~d~   98 (201)
T 3oes_A           30 LGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI---------IGVHG   98 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGT---------TTCCE
T ss_pred             ECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHH---------hcCCE
Confidence            599999999999999987643  22223333222233333  456789999999876543322222         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....++..+.+..+. ...|+++|+||+|+.+
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  143 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSP  143 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCcc
Confidence            99998887532222333444444443221 1368999999999853

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.47  E-value=1.7e-13  Score=119.92  Aligned_cols=118  Identities=18%  Similarity=0.115  Sum_probs=75.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHH-HHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQAL-ELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~-~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.....++...++|.........+ ++..+.+|||||..+.   .+.+. .....++  .++|+
T Consensus         9 vG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~--~~ad~   83 (307)
T 3r7w_A            9 MGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF--QMVQV   83 (307)
T ss_dssp             ECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh--ccCCE
Confidence            6999999999999999985445555556666666655555 5789999999997532   01111 1111122  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+.+.+.+........|+++|+||+|+.
T Consensus        84 vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~  128 (307)
T 3r7w_A           84 LIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV  128 (307)
T ss_dssp             EEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence            999988876321122223333343332111127999999999985

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.47  E-value=3.2e-13  Score=109.27  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|++.....+. +.+ |...........+..+.+|||||..+.....       ..++  ..+|+++
T Consensus        23 ~G~~~~GKSsl~~~l~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ii   91 (199)
T 4bas_A           23 CGLDNSGKTTIINQVKPAQSSSKH-ITA-TVGYNVETFEKGRVAFTVFDMGGAKKFRGLW-------ETYY--DNIDAVI   91 (199)
T ss_dssp             ECCTTSCHHHHHHHHSCCC----C-CCC-CSSEEEEEEEETTEEEEEEEECCSGGGGGGG-------GGGC--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCcccc-ccc-ccceeEEEEEeCCEEEEEEECCCCHhHHHHH-------HHHH--hcCCEEE
Confidence            699999999999999998753322 222 2224444556788999999999986432211       1222  6899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcC------CcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFG------KQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g------~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++.........++..+.+...      .....++++|+||+|+.
T Consensus        92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  140 (199)
T 4bas_A           92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA  140 (199)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred             EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence            99888863211222233433333211      00137999999999985

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.46  E-value=4.2e-13  Score=108.00  Aligned_cols=112  Identities=19%  Similarity=0.163  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....  ....+++..........++.  .+.+|||||..+....       ...++  ..+|+
T Consensus        27 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~--~~~d~   95 (190)
T 3con_A           27 VGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------RDQYM--RTGEG   95 (190)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------C--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHH-------HHHhh--CcCCE
Confidence            599999999999999987532  22333333333344455554  5889999997543211       11222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........+++.+...... ...++++|+||+|+.+
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence            99998887632222234455555554331 1279999999999853

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.46  E-value=4.5e-13  Score=107.55  Aligned_cols=112  Identities=18%  Similarity=0.294  Sum_probs=76.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc-HHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++... .++..+++|.........+++..+.+|||||..+..... .+.  ....++....+|++
T Consensus        13 vG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~--~~~~~~~~~~~~~~   89 (188)
T 2wjg_A           13 IGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEI--IARDYIINEKPDLV   89 (188)
T ss_dssp             ECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHH--HHHHHHHHHCCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHH--HHHHHHhccCCCEE
Confidence            69999999999999999763 455566666666666777889999999999998753221 111  11222222368999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++...  + +....++..+.+   .  ..|+++|+||+|+.
T Consensus        90 i~v~d~~~--~-~~~~~~~~~~~~---~--~~piilv~nK~Dl~  125 (188)
T 2wjg_A           90 VNIVDATA--L-ERNLYLTLQLME---M--GANLLLALNKMDLA  125 (188)
T ss_dssp             EEEEEGGG--H-HHHHHHHHHHHT---T--TCCEEEEEECHHHH
T ss_pred             EEEecchh--H-HHHHHHHHHHHh---c--CCCEEEEEEhhhcc
Confidence            99976652  2 233344444443   2  27899999999974

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.46  E-value=2.1e-13  Score=111.08  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....... .+..+..........+  +..+.+|||||..+.       ......++  ..+|+
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~   83 (203)
T 1zbd_A           14 IGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY--RGAMG   83 (203)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCCSCC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG--GGCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCc-CCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh--cCCCE
Confidence            599999999999999997642211 1112222222233344  457899999998532       11222233  57899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....++..+......+  .|+++|+||+|+.+
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~  127 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMED  127 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCc
Confidence            999988875321222344555665544333  79999999999853

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.46  E-value=1.7e-13  Score=108.73  Aligned_cols=113  Identities=19%  Similarity=0.162  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.... ....++.+.........+++  ..+.+|||||....       ......++  ..+|+
T Consensus        13 ~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~~~   82 (177)
T 1wms_A           13 LGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFY--RGSDC   82 (177)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGG--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHH--hcCCE
Confidence            699999999999999987532 12122223333334455666  47899999996432       11222222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........+++.+......  ....|+++|+||+|+.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence            99998887632222224455666555431  1236899999999985

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.46  E-value=1.3e-13  Score=112.71  Aligned_cols=111  Identities=17%  Similarity=0.160  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++..... ...++.+.........+++  ..+.+|||||..+..       .....++  ..+|+
T Consensus        35 vG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~--~~~d~  104 (201)
T 2hup_A           35 VGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------TITQSYY--RSANG  104 (201)
T ss_dssp             EECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH-------HHHHHHH--TTCSE
T ss_pred             ECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHH--hhCCE
Confidence            5999999999999999875321 1111222223334455666  588999999975321       1122222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+.+....+  .|+++|+||+|+.
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~  147 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLS  147 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccc
Confidence            999988875221122335666666654333  7899999999985

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.46  E-value=3.7e-13  Score=115.83  Aligned_cols=111  Identities=17%  Similarity=0.222  Sum_probs=77.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc-HHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|... .++.++++|.......... +..+.+|||||..+..... ++.  ..+.++....+|++
T Consensus         9 vG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~--v~~~~~~~~~~d~v   84 (272)
T 3b1v_A            9 IGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAK--VARDYLLSQRADSI   84 (272)
T ss_dssp             ECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHH--HHHHHHHTTCCSEE
T ss_pred             ECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHH--HHHHHHhcCCCCEE
Confidence            69999999999999999863 5677777777666555555 7889999999998753222 211  12233433579999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++.+.  . +....+...+.+.     -.|+++|+||+|+.
T Consensus        85 i~V~D~t~--~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~  120 (272)
T 3b1v_A           85 LNVVDATN--L-ERNLYLTTQLIET-----GIPVTIALNMIDVL  120 (272)
T ss_dssp             EEEEEGGG--H-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred             EEEecCCc--h-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence            99977653  2 2233444445442     27999999999974

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.46  E-value=2.4e-13  Score=106.11  Aligned_cols=112  Identities=20%  Similarity=0.180  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++....  ....+++..........++  ..+.+|||||..+......   ..+      ..+|+
T Consensus         9 ~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~---~~~------~~~~~   77 (166)
T 2ce2_X            9 VGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD---QYM------RTGEG   77 (166)
T ss_dssp             EESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHH---HHH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHH---Hhh------ccCCE
Confidence            599999999999999987532  2222333333333344554  4578999999765432111   112      36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.........+++.+...... ...|+++|+||+|+.+
T Consensus        78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X           78 FLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence            99998887532212234455555555431 1279999999999853

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.45  E-value=1.7e-13  Score=107.47  Aligned_cols=109  Identities=10%  Similarity=0.099  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++++....  ...+  |..........++..+.+|||||..+..       .....++  .++|+++
T Consensus         6 ~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~d~~i   72 (164)
T 1r8s_A            6 VGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYF--QNTQGLI   72 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGH-------HHHHHHT--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhhH-------HHHHHHh--ccCCEEE
Confidence            699999999999999986532  1111  2223334456678899999999985321       1122222  6899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+..... ....|+++|+||+|+.
T Consensus        73 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  114 (164)
T 1r8s_A           73 FVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLP  114 (164)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCc
Confidence            99888753211222233333332110 1127899999999984

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.45  E-value=2.5e-13  Score=106.98  Aligned_cols=112  Identities=17%  Similarity=0.081  Sum_probs=64.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCc-CcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++........ .+.+.........+++  ..+.+|||||..+... ....+   +      ..+|
T Consensus         8 vG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~---~------~~~d   77 (169)
T 3q85_A            8 VGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHC---L------QTGD   77 (169)
T ss_dssp             ECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------CHH---H------HHCS
T ss_pred             ECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhh---h------ccCC
Confidence            6999999999999999865432222 2233344444445665  4678999999875432 11111   1      3589


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+....++..+.+.... ...|+++|+||+|+.
T Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~  122 (169)
T 3q85_A           78 AFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLA  122 (169)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCG
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchh
Confidence            999999888632222333455555554331 127999999999985

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.45  E-value=3.3e-13  Score=109.74  Aligned_cols=109  Identities=20%  Similarity=0.208  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  ...+.+++.........+++.  .+.+|||||..+.......       ++  ..+|+
T Consensus        26 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~~~   94 (201)
T 2q3h_A           26 VGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPL-------CY--TNTDI   94 (201)
T ss_dssp             ECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGG-------GG--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHh-------hc--CCCcE
Confidence            69999999999999998762  333444444444445566664  5679999999765433221       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+....+   ..|+++|+||+|+.
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~  137 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLR  137 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence            99998887532 21111246666666543   27999999999985

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.45  E-value=1.8e-13  Score=109.85  Aligned_cols=112  Identities=17%  Similarity=0.097  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeE-EEEeeeC-----------CeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKG-----------GFTLNIIDTPGLVEAGYVNYQALELIK   68 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~-~~~~~~~-----------g~~v~liDTPG~~~~~~~~~~~~~~i~   68 (256)
                      +|.+|||||||+|+|++.... ....++.+.... ......+           ...+.+|||||....       .....
T Consensus        17 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~   88 (195)
T 3bc1_A           17 LGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF-------RSLTT   88 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-------HHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-------HHHHH
Confidence            599999999999999986532 111111111111 2233333           358899999998432       11222


Q ss_pred             HhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           69 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        69 ~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .++  ..+|++++|+++++.........++..+...... ...|+++|+||+|+.
T Consensus        89 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~  140 (195)
T 3bc1_A           89 AFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLE  140 (195)
T ss_dssp             HTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCG
T ss_pred             HHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence            223  6899999998887522112224555555554331 127999999999985

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.45  E-value=4.9e-13  Score=107.86  Aligned_cols=110  Identities=13%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|++....  .... .|...........+..+.+|||||..+.       ......++  ..+|+++
T Consensus        28 ~G~~~~GKSsli~~l~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~ii   95 (188)
T 1zd9_A           28 VGLQYSGKTTFVNVIASGQFN--EDMI-PTVGFNMRKITKGNVTIKLWDIGGQPRF-------RSMWERYC--RGVSAIV   95 (188)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC--CSCC-CCCSEEEEEEEETTEEEEEEEECCSHHH-------HTTHHHHH--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CccC-CCCceeEEEEEeCCEEEEEEECCCCHhH-------HHHHHHHH--ccCCEEE
Confidence            699999999999999987542  1111 2222333445677899999999996432       11222222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+.+... ....|+++|+||+|+.
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  137 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLP  137 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCc
Confidence            99888753211222233333332211 1137899999999985

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.45  E-value=2e-13  Score=109.43  Aligned_cols=109  Identities=8%  Similarity=0.014  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|++..........+.    ......+++..+.+|||||..+.....       ..++  ..+|+++
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ii   93 (181)
T 2h17_A           27 VGLDNAGKTTILYQFSMNEVVHTSPTIGS----NVEEIVINNTRFLMWDIGGQESLRSSW-------NTYY--TNTEFVI   93 (181)
T ss_dssp             EEETTSSHHHHHHHHHTTSCEEEECCSSS----SCEEEEETTEEEEEEEESSSGGGTCGG-------GGGG--TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccCCcCce----eeEEEEECCEEEEEEECCCCHhHHHHH-------HHHh--ccCCEEE
Confidence            58999999999999999875322222221    123455688999999999986533221       1222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++....+.....+..+.+... ....++++|+||+|+.
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  135 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK  135 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcc
Confidence            99888763222222333444333210 1127899999999985

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.44  E-value=2.3e-13  Score=110.04  Aligned_cols=109  Identities=19%  Similarity=0.228  Sum_probs=72.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  ...+.+++.........+++  ..+.+|||||..+.......       ++  ..+|+
T Consensus        24 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------~~--~~~d~   92 (194)
T 2atx_A           24 VGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL-------SY--PMTDV   92 (194)
T ss_dssp             EECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGG-------GC--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHH-------hc--CCCCE
Confidence            59999999999999998753  23333343333334445555  57899999998765422211       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+.+..+   ..|+++|+||+|+.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  135 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLR  135 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTST
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence            99998887532 22222256666666543   27999999999985

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.44  E-value=4.7e-13  Score=108.62  Aligned_cols=111  Identities=15%  Similarity=0.130  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.....  ...+++.........+++  ..+.+|||||..+    .......+      ..+|+
T Consensus        34 ~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~------~~~d~  101 (196)
T 2atv_A           34 FGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHM------RWGEG  101 (196)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhh------ccCCE
Confidence            5999999999999999876422  222222222233344454  5689999999876    22222222      36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....+++.+.+.... ...|+++|+||+|+.+
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~  146 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDH  146 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECccccc
Confidence            99998887532112223455555554321 1278999999999853

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.44  E-value=9.8e-14  Score=113.01  Aligned_cols=111  Identities=17%  Similarity=0.088  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....... .+..+.........+++  ..+.+|||||..+..   ......+      ..+|+
T Consensus        34 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~------~~~d~  103 (199)
T 2p5s_A           34 AGDAAVGKSSFLMRLCKNEFRENI-SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR---SIAKSYF------RKADG  103 (199)
T ss_dssp             ESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTCH---HHHHHHH------HHCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCCCccC-CCCccceeEEEEEEECCEEEEEEEEECCCCcchh---hhHHHHH------hhCCE
Confidence            599999999999999987532111 11111122223344444  568999999975432   1111122      37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+......+  .|+++|+||+|+.
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~  146 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR  146 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence            999988875322222344566666554333  7999999999984

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.44  E-value=7.8e-13  Score=106.75  Aligned_cols=111  Identities=15%  Similarity=0.207  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  ...+.+++.........+++  ..+.+|||||....... ..       ++  ..+|+
T Consensus        27 vG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~-------~~--~~~~~   94 (187)
T 3c5c_A           27 LGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ER-------YL--NWAHA   94 (187)
T ss_dssp             ECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HH-------HH--TTCSE
T ss_pred             ECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HH-------HH--hhCCE
Confidence            69999999999999998763  23333443333333344444  46789999998765432 11       11  57999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCC-cccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~-~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+...... ....++++|+||+|+.
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  140 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA  140 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence            99999988632222233455555554310 0127899999999984

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.44  E-value=2.2e-13  Score=111.75  Aligned_cols=109  Identities=16%  Similarity=0.230  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.....  ...+++..........++  ..+.+|||||..+.......+       +  ..+|+
T Consensus        31 vG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~--~~~d~   99 (207)
T 2fv8_A           31 VGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLS-------Y--PDTDV   99 (207)
T ss_dssp             EECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGG-------C--TTCCE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhh-------c--CCCCE
Confidence            5999999999999999876432  222232222223345555  478999999987654222211       1  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +...+..++..+.+... +  .|+++|+||+|+.
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~  142 (207)
T 2fv8_A          100 ILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLR  142 (207)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhh
Confidence            99998887632 33333456666666432 2  7999999999984

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.44  E-value=3.7e-13  Score=109.03  Aligned_cols=109  Identities=12%  Similarity=0.143  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++.+.......    .|.........+++..+.+|||||..+......       .++  ..+|+++
T Consensus        29 vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~~i   95 (190)
T 1m2o_B           29 LGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK-------DYF--PEVNGIV   95 (190)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------GGC--TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------HHH--hcCCEEE
Confidence            599999999999999987643221    233334556678889999999999865432211       112  5889999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  137 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAP  137 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCc
Confidence            99888763211222334444433211 1127899999999985

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.44  E-value=4.9e-13  Score=111.25  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=75.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      ||.+|||||||++++++...  ...+.++ ...........++  ..+.||||+|..........+.         +++|
T Consensus        19 vGd~~VGKTsLi~r~~~~~f--~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~---------~~a~   87 (216)
T 4dkx_A           19 LGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYI---------RDSA   87 (216)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--C----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHH---------TTCS
T ss_pred             ECcCCcCHHHHHHHHHhCCC--CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHh---------cccc
Confidence            69999999999999997653  2222222 2222333344444  4678999999876544333332         6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG  127 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~  127 (256)
                      ++++|+++++....+.-..++..+.+..+.+  .|+++|.||+|+...+.
T Consensus        88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~  135 (216)
T 4dkx_A           88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQ  135 (216)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCC
T ss_pred             EEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCc
Confidence            9999999987443344566777777777765  68999999999854333

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.43  E-value=6.2e-13  Score=107.88  Aligned_cols=109  Identities=8%  Similarity=0.028  Sum_probs=65.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++++.....  ..  .|.........+.+..+.+|||||..+.......+   +      ..+|+++
T Consensus        35 ~G~~~vGKSsLi~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~------~~~d~ii  101 (192)
T 2b6h_A           35 VGLDAAGKTTILYKLKLGEIVT--TI--PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHY---F------QNTQGLI  101 (192)
T ss_dssp             EESTTSSHHHHHHHHCSSCCEE--EE--EETTEEEEEEEETTEEEEEEECC-----CTTHHHH---H------HTCCEEE
T ss_pred             ECCCCCCHHHHHHHHHhCCccc--cC--CcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHH---h------ccCCEEE
Confidence            5999999999999999876421  11  12223344556788999999999986543322222   2      4899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++....+....++..+.+... ....|+++|+||+|+.
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~  143 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMP  143 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCC
Confidence            99888753211222233333332110 0127899999999984

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.43  E-value=1.7e-14  Score=117.52  Aligned_cols=113  Identities=15%  Similarity=0.160  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++..... ...++.+.........+++  ..+.+|||||..........++         ..+|+
T Consensus        39 vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~  108 (199)
T 3l0i_B           39 IGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY---------RGAHG  108 (199)
T ss_dssp             ECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC-----------CCCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHh---------hcCCE
Confidence            6999999999999999875422 1112223334444555666  5789999999766543322222         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      +++|+++++....+....++..+......+  .++++|+||+|+.+.
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~  153 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK  153 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-CC--SEEEEC-CCSSCC--
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccCC--CCEEEEEECccCCcc
Confidence            999977775322223344555555544333  799999999998543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.43  E-value=4.5e-13  Score=108.44  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=71.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++.........+++.  .+.+|||||..+.......       ++  ..+|+
T Consensus        29 vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~   97 (194)
T 3reg_A           29 VGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPL-------SY--ADSDV   97 (194)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGG-------GC--TTCSE
T ss_pred             ECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHh-------hc--cCCcE
Confidence            69999999999999998763  233333433333334455554  4599999996543322111       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++.. +......++..+......   .|+++|+||+|+.+
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~  141 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRK  141 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhcc
Confidence            99998887632 212124456666655332   79999999999853

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.43  E-value=4.3e-13  Score=109.31  Aligned_cols=113  Identities=14%  Similarity=0.065  Sum_probs=70.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++..... ...+..+.........+++  ..+.+|||||..+.......       ++  ..+|+
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~   83 (207)
T 1vg8_A           14 LGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA-------FY--RGADC   83 (207)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCG-------GG--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHH-------HH--hCCcE
Confidence            5999999999999999876422 1112223333333444544  57899999997553322211       11  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+......  ....|+++|+||+|+.
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  130 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence            99998887532112223455555554431  1137899999999985

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.43  E-value=2.1e-13  Score=108.45  Aligned_cols=113  Identities=12%  Similarity=0.037  Sum_probs=65.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|+|++..... ...++.+.........++   ...+.+|||||..+..       .....++  ..+|
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~d   83 (182)
T 1ky3_A           14 LGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFY--RGAD   83 (182)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCS--TTCC
T ss_pred             ECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHh--hcCC
Confidence            5999999999999999876421 111222233333444444   3588999999964322       1112222  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+....++..+......  ....|+++|+||+|+.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  131 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  131 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence            999998887532222334455555554431  1237999999999984

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.43  E-value=2.7e-13  Score=109.18  Aligned_cols=109  Identities=13%  Similarity=0.065  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++++......  .+  |.........+++..+.+|||||..+.......+       +  ..+|+++
T Consensus        28 ~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~-------~--~~~d~ii   94 (189)
T 2x77_A           28 LGLDNAGKTSILYRLHLGDVVTT--VP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCY-------F--SDTDAVI   94 (189)
T ss_dssp             EEETTSSHHHHHHHTCCSCCEEE--CS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCSSS-------S--TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCc--CC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHHHH-------h--hcCCEEE
Confidence            58999999999999988764321  11  2223344556778999999999987643322111       1  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+.+... ....|+++|+||+|+.
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  136 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLP  136 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTST
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCc
Confidence            99888753211222233333322211 1127899999999985

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.43  E-value=1.7e-13  Score=112.46  Aligned_cols=111  Identities=14%  Similarity=0.184  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... ....++.+.........+++  ..+.+|||||....       ......++  ..+|+
T Consensus        32 vG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~--~~~d~  101 (201)
T 2ew1_A           32 IGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYY--RSANA  101 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGS--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHH--hcCCE
Confidence            599999999999999987532 22222223333334455666  47899999996421       11222222  68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+.......  .++++|+||+|+.
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~  144 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLA  144 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence            999988875321122245566666554333  7899999999985

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.7e-13  Score=110.68  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=64.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV-NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~-~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++...... ....+++      ...+.+..+.+|||||..+.......++...   +  ..+|++
T Consensus        54 vG~~g~GKSsll~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~--~~~~~~  122 (193)
T 2ged_A           54 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS------AADYDGSGVTLVDFPGHVKLRYKLSDYLKTR---A--KFVKGL  122 (193)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH---G--GGEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcccccCCCce------eeeecCCeEEEEECCCCchHHHHHHHHHHhh---c--ccCCEE
Confidence            69999999999999998763211 0111111      1123567789999999977644333333221   1  368999


Q ss_pred             EEEEeCC-CCCCCHHHHHHHHHHHhhcC--CcccccEEEEEecccCCC
Q 025189           80 LYADRLD-AYRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        80 L~v~~~d-~~r~~~~~~~~~~~l~~~~g--~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++|++++ +.........++..+.....  .....|+++|+||+|+.+
T Consensus       123 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          123 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             EEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence            9998776 31111111122322222211  011278999999999853

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.43  E-value=2.7e-13  Score=108.25  Aligned_cols=109  Identities=12%  Similarity=0.052  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++++........    |.........+++..+.+|||||..+.......       ++  ..+|+++
T Consensus        24 ~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~ii   90 (183)
T 1moz_A           24 LGLDGAGKTTILYRLQIGEVVTTKP----TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC-------YY--ADTAAVI   90 (183)
T ss_dssp             EEETTSSHHHHHHHTCCSEEEEECS----STTCCEEEEEETTEEEEEEEEC----CCTTGGG-------TT--TTEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCcCccCC----cCccceEEEEECCEEEEEEECCCCHhHHHHHHH-------Hh--ccCCEEE
Confidence            5999999999999999876522222    111223445667899999999998764322211       11  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++....+.....+..+.+... ....|+++|+||+|+.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  132 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP  132 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCC
Confidence            99888753211222233333322210 1237999999999985

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.43  E-value=1.4e-12  Score=116.25  Aligned_cols=117  Identities=20%  Similarity=0.256  Sum_probs=81.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC--cHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV--NYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~--~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++... .++..+.+|..........++..+.+|||||+.+....  ..-....+...  ...+|+
T Consensus       173 vG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~--~~~ad~  249 (357)
T 2e87_A          173 AGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL--RYLGNL  249 (357)
T ss_dssp             ECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG--GGTCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH--HhcCCE
Confidence            69999999999999999873 45555666666666666677889999999999764321  11111122211  136899


Q ss_pred             EEEEEeCCCCC-CC-HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~-~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+|++++... ++ .....++..+...++   ..++++|+||+|+.
T Consensus       250 illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~  293 (357)
T 2e87_A          250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA  293 (357)
T ss_dssp             EEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred             EEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence            99997765432 23 334567777777664   27999999999984

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.43  E-value=5e-13  Score=116.59  Aligned_cols=77  Identities=18%  Similarity=0.295  Sum_probs=46.5

Q ss_pred             CCeEEEEEeCCCCCCCC------cCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHH-HHHHHHHHhhcCCcccccE
Q 025189           41 GGFTLNIIDTPGLVEAG------YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKS  113 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~------~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~-~~~~~~l~~~~g~~~~~~~  113 (256)
                      .+.++++|||||+.+..      .....+......++  ..+|++++|++.....+...+ ..+++.+...     ..++
T Consensus       129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~-----~~~~  201 (315)
T 1jwy_B          129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPANTDLANSDALQLAKEVDPE-----GKRT  201 (315)
T ss_dssp             TSCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-----CSSE
T ss_pred             CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecCcchhhhHHHHHHHHhCCC-----CCcE
Confidence            34679999999997522      12223333333444  488999999765332343333 3555554332     2799


Q ss_pred             EEEEecccCCC
Q 025189          114 LLVLTHAQLCP  124 (256)
Q Consensus       114 ivv~Tk~D~~~  124 (256)
                      ++|+||+|+.+
T Consensus       202 i~v~NK~Dl~~  212 (315)
T 1jwy_B          202 IGVITKLDLMD  212 (315)
T ss_dssp             EEEEECTTSSC
T ss_pred             EEEEcCcccCC
Confidence            99999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.42  E-value=2.6e-13  Score=108.45  Aligned_cols=109  Identities=18%  Similarity=0.140  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++.........+++.  .+.+|||||..+......       .++  ..+|+
T Consensus        11 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~   79 (186)
T 1mh1_A           11 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LSY--PQTDV   79 (186)
T ss_dssp             ECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-------GGC--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-------Hhc--cCCcE
Confidence            59999999999999997653  222333333333334455554  566999999865332211       111  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+.+..+   ..|+++|+||+|+.
T Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  122 (186)
T 1mh1_A           80 SLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR  122 (186)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccc
Confidence            99998887522 22222246666666544   27999999999984

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.42  E-value=9e-13  Score=107.10  Aligned_cols=113  Identities=14%  Similarity=0.052  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee-eCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|||||||+|.+++............+......... .....+.+|||||........   ..++         .++
T Consensus        26 vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------~~~   96 (196)
T 3llu_A           26 MGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF---------RGT   96 (196)
T ss_dssp             EESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH---------HTC
T ss_pred             ECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc---------ccC
Confidence            599999999999999986332211111112222222221 344689999999987643322   2222         479


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |++++|+++++ ++.+....+.+.+.+.....-..++++|+||+|+.
T Consensus        97 ~~~i~v~d~~~-~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~  142 (196)
T 3llu_A           97 GALIYVIDAQD-DYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL  142 (196)
T ss_dssp             SEEEEEEETTS-CCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             CEEEEEEECCC-chHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence            99999998886 34455555656665542111137999999999985

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.42  E-value=6e-13  Score=106.86  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++.+.......+    |.........+++..+.+|||||.....       .....++  ..+|+++
T Consensus        22 vG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~--~~~~~~i   88 (181)
T 1fzq_A           22 LGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKIR-------PYWRSYF--ENTDILI   88 (181)
T ss_dssp             EESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGGH-------HHHHHHH--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--CCCCEEE
Confidence            5999999999999999985432222    1222334456678999999999975321       1112222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+.+..+ ....|+++|+||+|+.
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  130 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLL  130 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTST
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcc
Confidence            99888753211122223333222111 1137899999999985

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.42  E-value=4.5e-13  Score=110.57  Aligned_cols=109  Identities=21%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....  ..+.+++.........+++.  .+.+|||||..+......       .++  ..+|+
T Consensus        40 vG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~~--~~~d~  108 (214)
T 2j1l_A           40 VGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRP-------LFY--PDASV  108 (214)
T ss_dssp             EECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC------------------------CEEE
T ss_pred             ECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHH-------HHh--ccCCE
Confidence            599999999999999987632  22233333333334455554  689999999764322111       111  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+++.+.+... +  .|+++|+||+|+.
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~  151 (214)
T 2j1l_A          109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLR  151 (214)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhh
Confidence            99998887522 22222245566655432 2  7999999999985

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.42  E-value=2e-13  Score=112.92  Aligned_cols=111  Identities=13%  Similarity=0.135  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+++... ........+.+...........+..+.+|||||..........++         ..+|++
T Consensus        21 ~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~~~~   91 (221)
T 3gj0_A           21 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY---------IQAQCA   91 (221)
T ss_dssp             EECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHH---------TTCCEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHH---------hcCCEE
Confidence            5999999999999955432 222222233333333333333456889999999765544433332         589999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|+++++.........++..+.+....   .|+++|+||+|+.
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~  132 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRVCEN---IPIVLCGNKVDIK  132 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTT---CCEEEEEECTTSS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCccc
Confidence            9998888632222334566666665432   7999999999985

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.41  E-value=1.6e-13  Score=111.10  Aligned_cols=112  Identities=20%  Similarity=0.091  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.....  ...++...........++  ..+.+|||||..+..   ......+      ..+|+
T Consensus        14 vG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~------~~~d~   82 (199)
T 2gf0_A           14 FGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP---AMQRLSI------SKGHA   82 (199)
T ss_dssp             EECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH---HHHHHHH------HHCSE
T ss_pred             ECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHHhH---HHHHHhh------ccCCE
Confidence            5999999999999999865421  112222222222233343  478999999976432   1111112      36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+.+..+.....|+++|+||+|+.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~  127 (199)
T 2gf0_A           83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET  127 (199)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence            999988875321122234555565554322237899999999985

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.41  E-value=5.9e-13  Score=108.61  Aligned_cols=109  Identities=14%  Similarity=0.138  Sum_probs=64.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++.+........    |.........+++..+.+|||||.........       .++  ..+|+++
T Consensus        31 vG~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--~~~d~~i   97 (198)
T 1f6b_A           31 LGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL--PAINGIV   97 (198)
T ss_dssp             EEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC----CCGGG-------GGG--GGCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccCC----CCCceeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH--hcCCEEE
Confidence            5999999999999999876432221    11222345567889999999999765432211       112  4789999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..-......++..+.+... ....|+++|+||+|+.
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  139 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRP  139 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCcc
Confidence            99888753211222334443333211 1137899999999985

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.41  E-value=2.2e-13  Score=110.06  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc-CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~-~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++....... ...+.+...........+..+.+|||||...       +......++  ..+|++
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~--~~~d~~   99 (191)
T 3dz8_A           29 IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-------YRTITTAYY--RGAMGF   99 (191)
T ss_dssp             EESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-------CHHHHHHHH--TTCCEE
T ss_pred             ECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH--ccCCEE
Confidence            599999999999999986532111 1112222222233334567899999999532       112222223  689999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|+++++....+....+++.+......+  .|+++|+||+|+.
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~  141 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDME  141 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence            99988875322233345666666654343  7999999999984

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.41  E-value=8.2e-13  Score=106.41  Aligned_cols=112  Identities=13%  Similarity=0.022  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++..... ...+..+.........++  +..+.+|||||..+.......++         ..+|+
T Consensus        21 ~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~d~   90 (195)
T 1x3s_A           21 IGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY---------RGAQG   90 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHH---------TTCCE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCc-cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHh---------ccCCE
Confidence            5999999999999999876421 111222222222333444  45789999999765433322222         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+...... ...++++|+||+|+.
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~  134 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCTR-NDIVNMLVGNKIDKE  134 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSC-SCCEEEEEEECTTSS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCc-CCCcEEEEEECCcCc
Confidence            99998887522112223344444443221 237899999999984

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.40  E-value=8.9e-13  Score=107.38  Aligned_cols=114  Identities=18%  Similarity=0.030  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.... ....++++.........+++.  .+.+|||||.....   ......   ++  ..+|+
T Consensus        29 vG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---~~~~~~---~~--~~~d~   99 (195)
T 3cbq_A           29 VGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---GWLRDH---CL--QTGDA   99 (195)
T ss_dssp             ECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---HHHHHH---HH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---hhhHHH---hh--ccCCE
Confidence            699999999999999875432 122233344444444556664  56789999986421   111111   12  36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+....++..+.+.... ...|+++|+||+|+.+
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  144 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLAR  144 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccc
Confidence            99999888632212233455555554321 1279999999999854

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.40  E-value=5.3e-13  Score=109.66  Aligned_cols=109  Identities=13%  Similarity=0.133  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC---CeEEEEEeCCCCCCCCcCcHHHHH-HHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALE-LIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~liDTPG~~~~~~~~~~~~~-~i~~~l~~~~~   76 (256)
                      +|.+|||||||+|+|++...  ...+.+++...  ....++   +..+.+|||||..+       +.. ....++  .++
T Consensus        13 vG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~--~~~   79 (214)
T 2fh5_B           13 VGLCDSGKTLLFVRLLTGQY--RDTQTSITDSS--AIYKVNNNRGNSLTLIDLPGHES-------LRFQLLDRFK--SSA   79 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEE--EEEECSSTTCCEEEEEECCCCHH-------HHHHHHHHHG--GGE
T ss_pred             ECCCCCCHHHHHHHHhCCCc--ccccCCcceee--EEEEecCCCccEEEEEECCCChh-------HHHHHHHHHH--hhC
Confidence            69999999999999998763  23333333322  234454   67899999999852       221 122222  589


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhc----CCcccccEEEEEecccCCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTF----GKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~----g~~~~~~~ivv~Tk~D~~~  124 (256)
                      |++++|+++++  +........+.+.+.+    ......|+++|+||+|+.+
T Consensus        80 ~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  129 (214)
T 2fh5_B           80 RAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  129 (214)
T ss_dssp             EEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             CEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence            99999987763  2222333333333321    1122379999999999853

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.40  E-value=3.7e-13  Score=109.83  Aligned_cols=109  Identities=16%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.....  .+.+++.........+++  ..+.+|||||..+.......       ++  ..+|+
T Consensus        31 vG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~--~~~d~   99 (201)
T 2gco_A           31 VGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPL-------SY--PDTDV   99 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCS--SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGG-------GC--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCcCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHH-------hc--CCCCE
Confidence            5999999999999999876422  222222222222344555  47899999997543222111       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+++.+.+... +  .|+++|+||+|+.
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~  142 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLR  142 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhh
Confidence            99998888632 22222456666666432 2  7999999999985

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.39  E-value=4.2e-13  Score=119.10  Aligned_cols=116  Identities=18%  Similarity=0.195  Sum_probs=81.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCC----cCcHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAG----YVNYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~----~~~~~~~~~i~~~l~~~~   75 (256)
                      +|.+|||||||+|+|++... .++.++.+|..+......+++ ..+.+|||||+.+..    .....+++.+.      .
T Consensus       164 vG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~------~  236 (342)
T 1lnz_A          164 VGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE------R  236 (342)
T ss_dssp             ESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH------H
T ss_pred             eCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH------h
Confidence            69999999999999998764 456666677777766666765 889999999986422    23345555553      6


Q ss_pred             CcEEEEEEeCCC---CCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDA---YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~---~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++|+|+++++   ....+....+++.|......-..+|+++|+||+|+.
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~  287 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  287 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence            899999988875   222223345556666543222348999999999984

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.39  E-value=3.7e-13  Score=120.60  Aligned_cols=112  Identities=17%  Similarity=0.250  Sum_probs=81.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc----HHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~----~~~~~~i~~~l~~~~~   76 (256)
                      ||.++||||||+|+|+|... .+++++.+|..+......+.+.++.++||||+.+.....    .+++..++      .+
T Consensus        78 vG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~------~a  150 (376)
T 4a9a_A           78 VGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR------TC  150 (376)
T ss_dssp             ECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH------HC
T ss_pred             ECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH------hc
Confidence            69999999999999999874 678899999999999999999999999999998754322    24444443      78


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCc-ccccEEEEEecccC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQL  122 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~-~~~~~ivv~Tk~D~  122 (256)
                      |++++|++.++  . ..+.+.+..-...++.. ..+|.++++||.|.
T Consensus       151 d~il~vvD~~~--p-~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          151 NLLFIILDVNK--P-LHHKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             SEEEEEEETTS--H-HHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             CccccccccCc--c-HHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            99999976653  1 23333333322333422 23688999999986

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.39  E-value=3.2e-13  Score=110.62  Aligned_cols=109  Identities=19%  Similarity=0.191  Sum_probs=70.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .+...+++.........+++.  .+.+|||||..+.......       ++  ..+|+
T Consensus        36 vG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~--~~~d~  104 (204)
T 4gzl_A           36 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPL-------SY--PQTDV  104 (204)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGG-------GC--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHH-------Hh--ccCCE
Confidence            59999999999999997653  233334444444444455555  4559999998543322111       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+.+... +  .|+++|+||+|+.
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~  147 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLR  147 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhc
Confidence            99998887632 22222246666666542 2  7999999999984

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.38  E-value=1.8e-12  Score=112.02  Aligned_cols=75  Identities=19%  Similarity=0.363  Sum_probs=44.2

Q ss_pred             CeEEEEEeCCCCCCCCc---Cc---HHHHHHHHHhhhcCCCc-EEEEEEeCCCCCCCHHHH-HHHHHHHhhcCCcccccE
Q 025189           42 GFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTID-VLLYADRLDAYRVDDLDR-QIIKAVTGTFGKQIWRKS  113 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d-~vL~v~~~d~~r~~~~~~-~~~~~l~~~~g~~~~~~~  113 (256)
                      +..+++|||||+.+...   ..   ..+...+..++  ...+ ++|+|++.+. .+...+. .+++.+..   .  ..++
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~v~d~~~-~~~~~~~~~~~~~~~~---~--~~~~  195 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV--TKENCLILAVSPANS-DLANSDALKIAKEVDP---Q--GQRT  195 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH--TSTTEEEEEEEESSS-CGGGCHHHHHHHHHCT---T--CSSE
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH--cCCCeEEEEEecCCc-chhhhHHHHHHHHhCC---C--CCeE
Confidence            36899999999986321   11   13333344444  3555 4457877654 3444442 34444332   2  2799


Q ss_pred             EEEEecccCCC
Q 025189          114 LLVLTHAQLCP  124 (256)
Q Consensus       114 ivv~Tk~D~~~  124 (256)
                      ++|+||+|+.+
T Consensus       196 i~V~NK~Dl~~  206 (299)
T 2aka_B          196 IGVITKLDLMD  206 (299)
T ss_dssp             EEEEECGGGSC
T ss_pred             EEEEEccccCC
Confidence            99999999863

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.38  E-value=2.4e-12  Score=114.78  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=45.6

Q ss_pred             CeEEEEEeCCCCCCCCc------CcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEE
Q 025189           42 GFTLNIIDTPGLVEAGY------VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL  115 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~------~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~iv  115 (256)
                      +..+++|||||+.+...      ........+..++  .++|++++|+......  ......++.+...-..+  +++++
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~--~~~~~~~~l~~~~~~~~--~~~i~  208 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQD--LATSDAIKISREVDPSG--DRTFG  208 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSC--GGGCHHHHHHHHSCTTC--TTEEE
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCC--cCCHHHHHHHHHhcccC--CCEEE
Confidence            44689999999987521      1122233333333  5899888885443222  12223333333332222  68999


Q ss_pred             EEecccCCCCC
Q 025189          116 VLTHAQLCPPD  126 (256)
Q Consensus       116 v~Tk~D~~~~~  126 (256)
                      |+||+|+.+..
T Consensus       209 V~nK~Dl~~~~  219 (360)
T 3t34_A          209 VLTKIDLMDKG  219 (360)
T ss_dssp             EEECGGGCCTT
T ss_pred             EEeCCccCCCc
Confidence            99999986443

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.38  E-value=2.5e-12  Score=102.23  Aligned_cols=106  Identities=13%  Similarity=0.106  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.....   ..++..........+++  ..+.+|||||...     ..   .+      .++|+
T Consensus        13 vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~---~~------~~~d~   75 (178)
T 2iwr_A           13 LGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AK---FS------GWADA   75 (178)
T ss_dssp             ECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HH---HH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hH---HH------HhCCE
Confidence            6999999999999999876432   22232233334445565  4678999999754     11   22      36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCc-ccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~-~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+++.+....... ...|+++|+||+|+.
T Consensus        76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            999988875321122233434454443211 137899999999983

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.37  E-value=7.2e-13  Score=127.78  Aligned_cols=112  Identities=18%  Similarity=0.235  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEE-------Eee--------------------eCC-----------
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV-------SRS--------------------KGG-----------   42 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~-------~~~--------------------~~g-----------   42 (256)
                      +|.+|+|||||+|+|+|..++.++..+++...+...       ...                    +.+           
T Consensus        75 vG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~  154 (695)
T 2j69_A           75 LGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKK  154 (695)
T ss_dssp             ECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhccc
Confidence            599999999999999999887776644431111100       000                    011           


Q ss_pred             -------------------eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHh
Q 025189           43 -------------------FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG  103 (256)
Q Consensus        43 -------------------~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~  103 (256)
                                         ..+++|||||+.+...........+      ..+|++|||++.+. ..+..+..++.....
T Consensus       155 ~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i------~~aD~vL~Vvda~~-~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          155 QAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYV------NNCHAILFVMRASQ-PCTLGERRYLENYIK  227 (695)
T ss_dssp             CSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHH------HSSSEEEEEEETTS-TTCHHHHHHHHHHTT
T ss_pred             cccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHH------HhCCEEEEEEeCCC-ccchhHHHHHHHHHH
Confidence                               3589999999986432222222222      47999999988764 466677665542222


Q ss_pred             hcCCcccccEEEEEecccCC
Q 025189          104 TFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus       104 ~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..    -.++++|+||+|+.
T Consensus       228 ~~----~~~iiiVlNK~Dl~  243 (695)
T 2j69_A          228 GR----GLTVFFLVNAWDQV  243 (695)
T ss_dssp             TS----CCCEEEEEECGGGG
T ss_pred             hh----CCCEEEEEECcccc
Confidence            11    26799999999985

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.37  E-value=6.8e-13  Score=109.23  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC------------CeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG------------GFTLNIIDTPGLVEAGYVNYQALELIK   68 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~------------g~~v~liDTPG~~~~~~~~~~~~~~i~   68 (256)
                      +|.+|||||||+|+|++.... ....++.+.........++            ...+.+|||||..       .+.....
T Consensus        31 vG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------~~~~~~~  102 (217)
T 2f7s_A           31 LGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------RFRSLTT  102 (217)
T ss_dssp             ESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------HHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-------hHHhHHH
Confidence            599999999999999987541 1111111111112222333            4678999999952       2222233


Q ss_pred             HhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189           69 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC  123 (256)
Q Consensus        69 ~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~  123 (256)
                      .++  ..+|++++|+++++.   .....+...+..+....  ...++++|+||+|+.
T Consensus       103 ~~~--~~~d~iilV~D~~~~---~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~  154 (217)
T 2f7s_A          103 AFF--RDAMGFLLMFDLTSQ---QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP  154 (217)
T ss_dssp             HHH--TTCCEEEEEEETTCH---HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred             HHh--cCCCEEEEEEECcCH---HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence            333  689999999887752   11122223333332211  237899999999985

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.37  E-value=3.1e-12  Score=114.40  Aligned_cols=117  Identities=15%  Similarity=0.109  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCC--CcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA--GYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~--~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|+|... .++....+|..+......++|..+.++||||+...  ...-+.+...+. .  ...+|+
T Consensus       185 vG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~--~~~aD~  260 (364)
T 2qtf_A          185 VGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-E--AKYSDA  260 (364)
T ss_dssp             ECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-G--GGGSSE
T ss_pred             ECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-H--HHhCCE
Confidence            69999999999999999874 45555667777767777888999999999998542  111122222222 1  257899


Q ss_pred             EEEEEeCCCCC--CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR--VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r--~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|++++...  .......+.+.+......+  .++++|+||+|+.
T Consensus       261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~  305 (364)
T 2qtf_A          261 LILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKI  305 (364)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGC
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCC
Confidence            99998776421  1111112233344332123  7899999999985

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.37  E-value=5.5e-13  Score=107.11  Aligned_cols=109  Identities=16%  Similarity=0.132  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....  ..+.++..........++  ...+.+|||||.........       .++  ..+|+
T Consensus        13 ~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~~~   81 (184)
T 1m7b_A           13 VGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LSY--PDSDA   81 (184)
T ss_dssp             EESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-------GGC--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hhc--CCCcE
Confidence            599999999999999987532  222222222222233344  35789999999754322211       111  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+.+..+ +  .|+++|+||+|+.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~  124 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR  124 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhh
Confidence            99998887522 11111345566655533 2  7999999999984

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.37  E-value=4.4e-12  Score=101.66  Aligned_cols=111  Identities=17%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH----HHHHHHHHhhh--cC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY----QALELIKGFLL--NK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~----~~~~~i~~~l~--~~   74 (256)
                      +|.+|||||||+|++++... ..+..+++|........  .  .+.+|||||+.+....+.    .+...+..++.  ..
T Consensus         7 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T 2cxx_A            7 AGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   81 (190)
T ss_dssp             EEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             ECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhc
Confidence            59999999999999999863 44444555555444332  3  679999999876543332    23333333332  35


Q ss_pred             CCcEEEEEEeCCCCCCCHH------------HHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAYRVDDL------------DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~------------~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .++++++|.+.+  .+...            +..+++.+..   .  ..|+++|+||+|+.
T Consensus        82 ~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~piilv~nK~Dl~  135 (190)
T 2cxx_A           82 NIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLRE---L--DIPTIVAVNKLDKI  135 (190)
T ss_dssp             GCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHHH---T--TCCEEEEEECGGGC
T ss_pred             cCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHHh---c--CCceEEEeehHhcc
Confidence            678888885544  22211            1122222222   1  27899999999985

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.37  E-value=7.5e-13  Score=108.59  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  ...+.+++.........+++  ..+.+|||||..........       ++  ..+|+
T Consensus        15 ~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~   83 (212)
T 2j0v_A           15 VGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPL-------SY--RGADI   83 (212)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CG-------GG--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHh-------hc--cCCCE
Confidence            59999999999999998653  22333333333333444554  57899999998764322111       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+....+   ..|+++|+||+|+.
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  126 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLR  126 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhh
Confidence            99998887532 22222256666666543   27999999999984

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.37  E-value=2.5e-12  Score=113.52  Aligned_cols=108  Identities=9%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|++....  ...  .|...........+..+.||||||..........++         ..+|++|
T Consensus       171 vG~~~vGKSsLl~~l~~~~~~--~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~---------~~ad~vi  237 (329)
T 3o47_A          171 VGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF---------QNTQGLI  237 (329)
T ss_dssp             EESTTSSHHHHHHHTCSSCCE--EEE--EETTEEEEEEEETTEEEEEEECC-----CCSHHHHH---------TTEEEEE
T ss_pred             ECCCCccHHHHHHHHhCCCCC--Ccc--cccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHh---------ccCCEEE
Confidence            599999999999999987642  222  234444556677889999999999655443322222         5899999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++.. +......+.+.+......  ..|+++|+||+|+.
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~  279 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLP  279 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTST
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCC
Confidence            999987633 323333333333322212  27899999999985

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.36  E-value=2.8e-13  Score=107.96  Aligned_cols=109  Identities=18%  Similarity=0.197  Sum_probs=62.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++..........++  ..+.+|||||..+.......       ++  ..+|+
T Consensus        14 ~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~   82 (182)
T 3bwd_D           14 VGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPL-------SY--RGADV   82 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTGGG-------GG--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHh-------hc--cCCCE
Confidence            59999999999999998653  22222222211111223333  35569999998654322211       11  57999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+++.+....+   ..|+++|+||+|+.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  125 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLR  125 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhh
Confidence            99998887522 22222246666666543   27999999999984

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.35  E-value=2.9e-12  Score=105.52  Aligned_cols=110  Identities=15%  Similarity=0.223  Sum_probs=66.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc-CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~-~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++....... ...+++      ...+.+..+.+|||||......   .....++...  ..+|++
T Consensus        18 ~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~--~~~~~~   86 (218)
T 1nrj_B           18 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS------AADYDGSGVTLVDFPGHVKLRY---KLSDYLKTRA--KFVKGL   86 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE------ETTGGGSSCEEEECCCCGGGTH---HHHHHHHHHG--GGEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCeeeecCceE------EEEeeCceEEEEECCCcHHHHH---HHHHHHHhcc--ccCCEE
Confidence            599999999999999987632111 111111      1223566789999999965431   1111222111  348999


Q ss_pred             EEEEeCC-CC-CCCHHHHHHHHHHHhh----cCCcccccEEEEEecccCCC
Q 025189           80 LYADRLD-AY-RVDDLDRQIIKAVTGT----FGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        80 L~v~~~d-~~-r~~~~~~~~~~~l~~~----~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++|++++ +. ++... ...+..+...    ...+  .|+++|+||+|+..
T Consensus        87 i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~  134 (218)
T 1nrj_B           87 IFMVDSTVDPKKLTTT-AEFLVDILSITESSCENG--IDILIACNKSELFT  134 (218)
T ss_dssp             EEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTT
T ss_pred             EEEEECCCChHHHHHH-HHHHHHHHhcccccccCC--CCEEEEEEchHhcc
Confidence            9998887 32 24333 3344433332    1222  78999999999854

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.35  E-value=1.3e-12  Score=107.87  Aligned_cols=109  Identities=13%  Similarity=0.103  Sum_probs=70.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++...  ...+.+++.........++  ...+.+|||||.........       .++  ..+|+
T Consensus        33 vG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--~~~d~  101 (214)
T 3q3j_B           33 VGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP-------LCY--SDSDA  101 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG-------GGC--TTCSE
T ss_pred             ECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH-------HHc--CCCeE
Confidence            69999999999999998763  2222333332223233343  35789999999764332221       112  58999


Q ss_pred             EEEEEeCCCCCCCHH-HHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~-~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++...... ...+++.+.+... +  .|+++|+||+|+.
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~  144 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLR  144 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhc
Confidence            999998886321122 3456677766643 2  7999999999984

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.34  E-value=1.7e-12  Score=122.08  Aligned_cols=116  Identities=19%  Similarity=0.262  Sum_probs=72.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--cccCCCCCcceeEEEEee------------------------------------eCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--TVNSFQSEALRPVMVSRS------------------------------------KGG   42 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~------------------------------------~~g   42 (256)
                      +|.+|+|||||+|+|+|...+  .++..+.++.........                                    +.+
T Consensus        71 vG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~  150 (550)
T 2qpt_A           71 AGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPN  150 (550)
T ss_dssp             EEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCC
T ss_pred             ECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccc
Confidence            589999999999999998764  345444443321111110                                    000


Q ss_pred             ---eEEEEEeCCCCCCCCcC--cH--HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEE
Q 025189           43 ---FTLNIIDTPGLVEAGYV--NY--QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL  115 (256)
Q Consensus        43 ---~~v~liDTPG~~~~~~~--~~--~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~iv  115 (256)
                         ..+++|||||+.+....  ..  .+......++  ..+|++|+|++.+.....+.+..+++.+...     ..++++
T Consensus       151 ~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~pvil  223 (550)
T 2qpt_A          151 QVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH-----EDKIRV  223 (550)
T ss_dssp             HHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-----GGGEEE
T ss_pred             cccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-----CCCEEE
Confidence               35899999999863211  00  0112222222  4789999998876534677777777766543     278999


Q ss_pred             EEecccCC
Q 025189          116 VLTHAQLC  123 (256)
Q Consensus       116 v~Tk~D~~  123 (256)
                      |+||+|+.
T Consensus       224 VlNK~Dl~  231 (550)
T 2qpt_A          224 VLNKADMV  231 (550)
T ss_dssp             EEECGGGS
T ss_pred             EEECCCcc
Confidence            99999985

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.34  E-value=3.9e-12  Score=113.27  Aligned_cols=76  Identities=18%  Similarity=0.350  Sum_probs=45.1

Q ss_pred             CeEEEEEeCCCCCCCCc---Cc---HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHH-HHHHHHHhhcCCcccccEE
Q 025189           42 GFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDR-QIIKAVTGTFGKQIWRKSL  114 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~-~~~~~l~~~~g~~~~~~~i  114 (256)
                      +.++++|||||+.....   ..   +.+...+..++. ...+++|+|++.+. .+...+. .+++.+.   ..+  .+++
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~---~~~--~~~i  201 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDALKVAKEVD---PQG--QRTI  201 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCHHHHHHHHHC---TTC--TTEE
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhHHHHHHHHhC---cCC--CceE
Confidence            46799999999986321   11   233334444443 45567777766553 3444433 2444332   222  7999


Q ss_pred             EEEecccCCC
Q 025189          115 LVLTHAQLCP  124 (256)
Q Consensus       115 vv~Tk~D~~~  124 (256)
                      +|+||+|+.+
T Consensus       202 ~V~NK~Dl~~  211 (353)
T 2x2e_A          202 GVITKLDLMD  211 (353)
T ss_dssp             EEEECGGGSC
T ss_pred             EEeccccccC
Confidence            9999999863

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.34  E-value=1.1e-12  Score=107.86  Aligned_cols=109  Identities=16%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|++....  ..+.++..........++  ...+.+|||||.........       .++  ..+|+
T Consensus        34 vG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--~~~d~  102 (205)
T 1gwn_A           34 VGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LSY--PDSDA  102 (205)
T ss_dssp             EESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-------GGC--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-------hhc--cCCCE
Confidence            699999999999999987542  222222222222233344  35789999999754322111       111  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+.+... +  .|+++|+||+|+.
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~  145 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR  145 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhc
Confidence            99998887522 11111345566665543 2  7899999999984

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.31  E-value=2.6e-12  Score=116.16  Aligned_cols=83  Identities=18%  Similarity=0.214  Sum_probs=41.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee---------------------eC---CeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---------------------KG---GFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~v~liDTPG~~~~   56 (256)
                      +|.+|||||||+|+|++.. +.++.++.+|..+......                     ++   +.++.+|||||+...
T Consensus         6 vG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~   84 (397)
T 1wxq_A            6 VGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG   84 (397)
T ss_dssp             EECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred             ECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccc
Confidence            6999999999999999987 5677777777665544321                     12   257899999999754


Q ss_pred             CcCcHHHHHHHHHhh-hcCCCcEEEEEEeCCC
Q 025189           57 GYVNYQALELIKGFL-LNKTIDVLLYADRLDA   87 (256)
Q Consensus        57 ~~~~~~~~~~i~~~l-~~~~~d~vL~v~~~d~   87 (256)
                      ......   ...+++ ..+.+|++++|++..+
T Consensus        85 a~~~~~---l~~~~l~~i~~aD~il~VvD~~~  113 (397)
T 1wxq_A           85 AHEGRG---LGNKFLDDLRMASALIHVVDATG  113 (397)
T ss_dssp             -------------CCCSSTTCSEEEEEEETTC
T ss_pred             hhhhhh---HHHHHHHHHhcCCEEEEEEeccc
Confidence            322111   112222 2268999999988865

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.31  E-value=4.8e-12  Score=102.73  Aligned_cols=113  Identities=14%  Similarity=0.074  Sum_probs=66.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCC-CcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEA-GYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~-~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++.|.....++...+++.........++|.  .+.+|||+|.... ......+   +      ...|
T Consensus        12 vG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~---~------~~~~   82 (192)
T 2cjw_A           12 IGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC---M------QVGD   82 (192)
T ss_dssp             ECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGH---H------HHCS
T ss_pred             ECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhh---c------ccCC
Confidence            6999999999999999754322333333333333444566665  4578999997541 1111111   1      3579


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+....++..+.+.... ...++++|.||+|+.
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~  127 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLV  127 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCG
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhh
Confidence            999999898632222233455555554221 126899999999984

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.30  E-value=1.3e-11  Score=99.47  Aligned_cols=105  Identities=16%  Similarity=0.045  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++....  ....+ |.........+++.  .+.+|||||.....        .+      ..+|+
T Consensus        26 vG~~~vGKSsL~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~------~~~~~   88 (184)
T 3ihw_A           26 VGNLSSGKSALVHRYLTGTYV--QEESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FA------AWVDA   88 (184)
T ss_dssp             ECCTTSCHHHHHHHHHHSSCC--CCCCT-TCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCcCC-CcceEEEEEEECCEEEEEEEEECCCChhhh--------ee------cCCCE
Confidence            699999999999999987542  11222 22233345566764  56779999985421        22      36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..++..+..... ....++++|+||+|+.
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence            9999888863211222445565655432 1237899999999984

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.30  E-value=8e-12  Score=111.64  Aligned_cols=117  Identities=21%  Similarity=0.299  Sum_probs=59.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC------CCcceeE--EEEeeeCCe--EEEEEeCCCCCCCCc-------CcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRPV--MVSRSKGGF--TLNIIDTPGLVEAGY-------VNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~------~~t~~~~--~~~~~~~g~--~v~liDTPG~~~~~~-------~~~~~   63 (256)
                      +|.+|+|||||+|+|++...+..+...      ..|....  .......+.  .+++|||||+++...       ....+
T Consensus        43 vG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i  122 (361)
T 2qag_A           43 VGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI  122 (361)
T ss_dssp             CCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHH
T ss_pred             EcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHH
Confidence            699999999999999997654333211      1122111  122233444  689999999976421       11111


Q ss_pred             HHHHHHhh-----------hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l-----------~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...+..++           ...++|+++|++......+...+..+++.+.    ..  .|+|+|+||+|+.
T Consensus       123 ~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~~--~piIlV~NK~Dl~  187 (361)
T 2qag_A          123 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTL  187 (361)
T ss_dssp             HHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSS
T ss_pred             HHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----cC--CCEEEEEECCCCC
Confidence            11111222           1235678888854433457777776666542    22  7899999999985

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.30  E-value=3e-12  Score=106.07  Aligned_cols=114  Identities=14%  Similarity=0.046  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.|.....++..++++.........++|.  .+.+|||+|....    ..   .+... .....|+
T Consensus        43 vG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~----~~---~l~~~-~~~~a~~  114 (211)
T 2g3y_A           43 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----NE---WLHDH-CMQVGDA  114 (211)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----HH---HHHHC-CCCCCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch----hh---hHHHH-HHhhCCE
Confidence            6999999999999999865433343333333434444566765  4578999986421    11   12211 1256899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++..-.+....+...+.+.... ...|+++|.||+|+.
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~  158 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLV  158 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGG-TTSCEEEEEECTTCG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEChHHh
Confidence            99999998632112223344445443211 127899999999985

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.29  E-value=1.1e-11  Score=99.62  Aligned_cols=113  Identities=11%  Similarity=0.034  Sum_probs=64.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCcceeEEEEe---ee--CCeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF-------QSEALRPVMVSR---SK--GGFTLNIIDTPGLVEAGYVNYQALELIK   68 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~---~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~   68 (256)
                      +|.+|||||||+|.+.|.........       ...|........   .+  .+..+.+|||||..+......       
T Consensus        20 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------   92 (198)
T 3t1o_A           20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK-------   92 (198)
T ss_dssp             ECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH-------
T ss_pred             ECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH-------
Confidence            69999999999999987643211100       001111111111   12  245789999999865432111       


Q ss_pred             HhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHH----HHhhcCCcccccEEEEEecccCC
Q 025189           69 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKA----VTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        69 ~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~----l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .++  ..+|++++|+++++.+ ...+...++.    +.+........|+++|+||+|+.
T Consensus        93 ~~~--~~~d~~i~v~D~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~  148 (198)
T 3t1o_A           93 LIL--RGVDGIVFVADSAPNR-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP  148 (198)
T ss_dssp             HHT--TTCCEEEEEEECCGGG-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred             HHH--hcCCEEEEEEECCcch-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence            122  6899999998887422 2223333333    33321111237999999999984

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.28  E-value=2.5e-11  Score=98.70  Aligned_cols=111  Identities=15%  Similarity=0.072  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|.|+|....... .++.+.........++|.  .+.+|||||..........+.         ..+|+
T Consensus        11 vG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~---------~~~~~   80 (199)
T 2f9l_A           11 IGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYY---------RGAVG   80 (199)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHH---------TTCSE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHH---------hcCCE
Confidence            699999999999999997542221 122223333445567775  567899999765433222222         47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++......+....++..+......  ..++++|+||+|+.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~  123 (199)
T 2f9l_A           81 ALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLR  123 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccc
Confidence            99998876421111222344445443222  27899999999985

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.28  E-value=2.6e-12  Score=103.29  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeee-----CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSK-----GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~-----~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~   74 (256)
                      +|.+|||||||+|.+.+......+...++ +.........+     ....+.+|||||..........+       +  .
T Consensus         8 vG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~--~   78 (184)
T 2zej_A            8 VGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHF-------M--T   78 (184)
T ss_dssp             ESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHH-------H--H
T ss_pred             ECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHH-------c--c
Confidence            69999999999999999632222222222 12222222222     35688999999975322221111       1  3


Q ss_pred             CCcEEEEEEeCCCC-CCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~-r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +.|++++|+++++. +.......++..+..... +  .|+++|.||+|+.
T Consensus        79 ~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~  125 (184)
T 2zej_A           79 QRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVS  125 (184)
T ss_dssp             HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGC
T ss_pred             CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcc
Confidence            67899999888752 111222344555544322 2  7899999999984

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.93  E-value=3.6e-13  Score=109.97  Aligned_cols=109  Identities=18%  Similarity=0.184  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++..........++  ..+.+|||||..+.......+       +  ..+|+
T Consensus        36 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~--~~~d~  104 (204)
T 3th5_A           36 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLS-------Y--PQTDV  104 (204)
Confidence            69999999999999997653  22222233222222333444  456699999976543221111       1  47899


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......++..+....+   ..|+++|+||+|+.
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~  147 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR  147 (204)
Confidence            99998776533 33332355555555433   27899999999985

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.26  E-value=2.8e-11  Score=116.93  Aligned_cols=117  Identities=21%  Similarity=0.327  Sum_probs=73.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEE-------------------------------------------
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS-------------------------------------------   37 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~-------------------------------------------   37 (256)
                      +|.+++||||++|+|+|....+.+.. .+|+.+....                                           
T Consensus        57 vG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~i  135 (772)
T 3zvr_A           57 VGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI  135 (772)
T ss_dssp             EECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCC
T ss_pred             ECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcc
Confidence            59999999999999999876444432 2333221111                                           


Q ss_pred             --------eee-CCeEEEEEeCCCCCCCCc---Cc---HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHH-HHHHHH
Q 025189           38 --------RSK-GGFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDR-QIIKAV  101 (256)
Q Consensus        38 --------~~~-~g~~v~liDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~-~~~~~l  101 (256)
                              ... ++.++++|||||+.....   ..   ....+.+..++. ...|++|+|++.+. .....+. .+++.+
T Consensus       136 s~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d~l~ll~~L  213 (772)
T 3zvr_A          136 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDALKIAKEV  213 (772)
T ss_dssp             CSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCHHHHHHHHH
T ss_pred             cccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhHHHHHHHHH
Confidence                    111 133578999999987321   11   233334444443 68899999976654 3444554 566555


Q ss_pred             HhhcCCcccccEEEEEecccCCCC
Q 025189          102 TGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus       102 ~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      ...     ..|+++|+||+|+.+.
T Consensus       214 ~~~-----g~pvIlVlNKiDlv~~  232 (772)
T 3zvr_A          214 DPQ-----GQRTIGVITKLDLMDE  232 (772)
T ss_dssp             CTT-----CSSEEEEEECTTSSCT
T ss_pred             Hhc-----CCCEEEEEeCcccCCc
Confidence            433     2799999999998643

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.24  E-value=8.6e-12  Score=108.93  Aligned_cols=109  Identities=18%  Similarity=0.158  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEE--EEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTL--NIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v--~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++..........++..+  .+|||||..........       ++  ..+|+
T Consensus       161 ~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~  229 (332)
T 2wkq_A          161 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPL-------SY--PQTDV  229 (332)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGG-------GC--TTCSE
T ss_pred             ECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHH-------hc--cCCCE
Confidence            59999999999999997653  23334444444444455666654  59999998654322211       11  58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+++.+....+   ..|+++|+||+|+.
T Consensus       230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~  272 (332)
T 2wkq_A          230 FLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLR  272 (332)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcc
Confidence            99998887522 21222245566666543   27999999999984

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.23  E-value=8.7e-11  Score=107.53  Aligned_cols=110  Identities=11%  Similarity=0.073  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|.+++|||||+|+|++........                              ..+.|........+.++..+++|||
T Consensus        23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDT  102 (439)
T 3j2k_7           23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDA  102 (439)
T ss_pred             EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEEC
Confidence            5999999999999997653211110                              1234555555566778889999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCC------HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD------DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~------~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+       +...+...+  ..+|++|+|++.+..-+.      ....+.+..+.. .+.   +++++|+||+|+.
T Consensus       103 PGh~~-------f~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~~iIvviNK~Dl~  168 (439)
T 3j2k_7          103 PGHKS-------FVPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---KHLIVLINKMDDP  168 (439)
T ss_pred             CChHH-------HHHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---CeEEEEeecCCCc
Confidence            99743       233333322  479999999887753221      234444443333 231   4599999999984

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.23  E-value=1.6e-11  Score=113.67  Aligned_cols=110  Identities=11%  Similarity=0.150  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT------------------------------VNSFQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~------------------------------~~~~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|.+|+|||||+|+|++.....                              .....+.|...........+..+.||||
T Consensus        39 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDT  118 (483)
T 3p26_A           39 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA  118 (483)
T ss_dssp             ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEEEEECC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEEC
Confidence            5999999999999998651100                              0011234444555556677889999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC------CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r------~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+.       ...+...+  ..+|++|+|++++...      ........+..+.. .+.   +++++|+||+|+.
T Consensus       119 PG~~~f-------~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iIvviNK~Dl~  184 (483)
T 3p26_A          119 PGHRDF-------VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLIIAMNKMDNV  184 (483)
T ss_dssp             CCCGGG-------HHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEEEEEECGGGG
T ss_pred             CCcHHH-------HHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEEEEEECcCcc
Confidence            998542       22222222  5899999998877532      22344444433333 332   5799999999985

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.22  E-value=6.8e-11  Score=96.57  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=63.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhh-cCC
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLL-NKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~-~~~   75 (256)
                      +|.+|||||||+|+|+|.. .+.++...+++.....  ..+++ .+.++||||+.+....   ...+...+..++. ...
T Consensus        32 vG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (210)
T 1pui_A           32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQS  108 (210)
T ss_dssp             EECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhc
Confidence            6999999999999999976 3333333344433222  22333 5689999998753211   1222223333332 257


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|.+++|+++.. ..+..+.++.+.+... +    .+.++|.||+|..
T Consensus       109 ~~~~~~v~d~~~-~~~~~~~~~~~~~~~~-~----~~~~~v~nK~D~~  150 (210)
T 1pui_A          109 LQGLVVLMDIRH-PLKDLDQQMIEWAVDS-N----IAVLVLLTKADKL  150 (210)
T ss_dssp             EEEEEEEEETTS-CCCHHHHHHHHHHHHT-T----CCEEEEEECGGGS
T ss_pred             ccEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEecccCC
Confidence            899999988765 3445455555544432 2    6888999999974

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.21  E-value=9.3e-11  Score=94.90  Aligned_cols=111  Identities=17%  Similarity=0.106  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEE--EEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTL--NIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v--~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|.|.|....... .++.+.........++|..+  .+|||||..........+.         ..+++
T Consensus        35 vG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~---------~~~~~  104 (191)
T 1oix_A           35 IGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY---------RGAVG  104 (191)
T ss_dssp             EECTTSSHHHHHHHHHHSCCCCSC-CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHH---------TTCCE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHh---------hcCCE
Confidence            699999999999999997542221 22223333344556777654  5699999876443332222         47889


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++.+....+....+++.+.+....  ..++++|+||+|+.
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~  147 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLR  147 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccc
Confidence            99997776421111112344444443222  36899999999984

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.19  E-value=5.3e-11  Score=108.78  Aligned_cols=109  Identities=15%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc----------CCC----------------------CCcceeEEEEeeeCCeEEEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN----------SFQ----------------------SEALRPVMVSRSKGGFTLNII   48 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~g~~v~li   48 (256)
                      +|.+|+|||||+|+|++.......          ...                      +.|..........++..+++|
T Consensus        30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~ii  109 (434)
T 1zun_B           30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA  109 (434)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred             EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEE
Confidence            599999999999999875421111          011                      122223333445678899999


Q ss_pred             eCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           49 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||||..+.       ...+...+  ..+|++|+|++++. .......+.+..+.. .+-   +++++|+||+|+.
T Consensus       110 DtpGh~~f-------~~~~~~~~--~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~-~~~---~~iIvviNK~Dl~  170 (434)
T 1zun_B          110 DTPGHEQY-------TRNMATGA--STCDLAIILVDARY-GVQTQTRRHSYIASL-LGI---KHIVVAINKMDLN  170 (434)
T ss_dssp             ECCCSGGG-------HHHHHHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHH-TTC---CEEEEEEECTTTT
T ss_pred             ECCChHHH-------HHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEEcCcCC
Confidence            99997542       12222222  68999999988875 345555555554443 332   4799999999985

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.18  E-value=2.2e-11  Score=113.93  Aligned_cols=108  Identities=10%  Similarity=0.134  Sum_probs=73.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT---------------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~   59 (256)
                      +|.+|+|||||+|+|++...+.               ++.      ..+.|.........+++..++||||||..+... 
T Consensus        19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~-   97 (528)
T 3tr5_A           19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTE-   97 (528)
T ss_dssp             EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCH-
T ss_pred             ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHH-
Confidence            5899999999999997321110               000      012333344456678899999999999876432 


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                        ...    .++  ..+|++|+|++... ........++..+...-     .|+++|+||+|+.
T Consensus        98 --~~~----~~l--~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~-----iPiivviNK~Dl~  147 (528)
T 3tr5_A           98 --DTY----RTL--TAVDSALMVIDAAK-GVEPRTIKLMEVCRLRH-----TPIMTFINKMDRD  147 (528)
T ss_dssp             --HHH----HGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHHTTT-----CCEEEEEECTTSC
T ss_pred             --HHH----HHH--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCCCCc
Confidence              222    222  47999999987775 46667777776665442     7999999999984

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.17  E-value=1.2e-10  Score=107.82  Aligned_cols=108  Identities=11%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc------cccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV------TVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~------~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~   74 (256)
                      +|..++|||||+|+|++....      ......+.|.........+++..+++|||||..       ++...+...+  .
T Consensus        25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~~~~~~~--~   95 (482)
T 1wb1_A           25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRAVVSAA--D   95 (482)
T ss_dssp             EECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHHHHHHT--T
T ss_pred             ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHHHHHHHH--h
Confidence            589999999999999997611      111222334444334456688999999999963       3334443333  5


Q ss_pred             CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+|++|+|++++. .......+.+..+.. .+    .+.++|+||+|+.
T Consensus        96 ~aD~~ilVvda~~-g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~  138 (482)
T 1wb1_A           96 IIDLALIVVDAKE-GPKTQTGEHMLILDH-FN----IPIIVVITKSDNA  138 (482)
T ss_dssp             SCCEEEEEEETTT-CSCHHHHHHHHHHHH-TT----CCBCEEEECTTSS
T ss_pred             hCCEEEEEEecCC-CccHHHHHHHHHHHH-cC----CCEEEEEECCCcc
Confidence            8999999988765 345566666655544 33    5669999999985

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.15  E-value=9.3e-11  Score=111.48  Aligned_cols=110  Identities=12%  Similarity=0.155  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|.+|+|||||+|+|++........                              ..+.|...........+..++||||
T Consensus       173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDT  252 (611)
T 3izq_1          173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA  252 (611)
T ss_dssp             ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEEC
T ss_pred             EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEEC
Confidence            5999999999999999864321110                              1234444444556677889999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC------CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r------~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+       +...+...+  ..+|++|+|++++...      ........+..+.. .|.   +++++|+||+|+.
T Consensus       253 PG~e~-------f~~~~~~~~--~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~iIVVvNKiDl~  318 (611)
T 3izq_1          253 PGHRD-------FVPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLIIAMNKMDNV  318 (611)
T ss_dssp             CSSSC-------HHHHHTTTS--SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEEEEEEECTTTT
T ss_pred             CCCcc-------cHHHHHHHH--hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeEEEEEeccccc
Confidence            99854       222222222  5899999997776310      12233333333332 232   5699999999985

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.14  E-value=1.6e-10  Score=108.16  Aligned_cols=110  Identities=14%  Similarity=0.085  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeEEE------Eee----eCCeEEEEEeCCCCCCCCcCcHHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMV------SRS----KGGFTLNIIDTPGLVEAGYVNYQALELIKG   69 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~-~~~~~------~~~----~~g~~v~liDTPG~~~~~~~~~~~~~~i~~   69 (256)
                      +|.+|||||||+|++++....  ....++.. .....      ...    ..+..+.+|||||..........++     
T Consensus        47 vG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l-----  119 (535)
T 3dpu_A           47 IGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM-----  119 (535)
T ss_dssp             ESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH-----
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc-----
Confidence            699999999999999997632  11111111 11111      111    2267899999999765544433332     


Q ss_pred             hhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189           70 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG  127 (256)
Q Consensus        70 ~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~  127 (256)
                          .++|++++|++++.  . +....+++.+.+..+ +  .|+++|+||+|+....+
T Consensus       120 ----~~~d~ii~V~D~s~--~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~  167 (535)
T 3dpu_A          120 ----TRSSVYMLLLDSRT--D-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYN  167 (535)
T ss_dssp             ----HSSEEEEEEECGGG--G-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCC
T ss_pred             ----cCCcEEEEEEeCCC--c-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccc
Confidence                37999999976653  2 455667777777643 2  79999999999864433

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.13  E-value=5e-12  Score=118.13  Aligned_cols=108  Identities=15%  Similarity=0.175  Sum_probs=74.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|+|||||+|+|.+..... ...++.|.....+.... ++..+++|||||..+.......+         ...+|++
T Consensus        10 vG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~---------~~~aD~v   79 (537)
T 3izy_P           10 MGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARG---------TQVTDIV   79 (537)
T ss_dssp             EESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSS---------SBSBSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHH---------HccCCEE
Confidence            5999999999999999876432 23344455444444444 56789999999986644322211         1478999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++|+++++ .........+..+...   +  .|+++|+||+|+.+
T Consensus        80 ILVVDa~d-g~~~qt~e~l~~~~~~---~--vPiIVViNKiDl~~  118 (537)
T 3izy_P           80 ILVVAADD-GVMKQTVESIQHAKDA---H--VPIVLAINKCDKAE  118 (537)
T ss_dssp             EEECBSSS-CCCHHHHHHHHHHHTT---T--CCEEECCBSGGGTT
T ss_pred             EEEEECCC-CccHHHHHHHHHHHHc---C--CcEEEEEecccccc
Confidence            99987775 4556666666555543   2  68999999999853

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.11  E-value=1.1e-10  Score=105.61  Aligned_cols=108  Identities=11%  Similarity=0.088  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC-------ccc---ccC------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGER-------VVT---VNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL   64 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-------~~~---~~~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~   64 (256)
                      +|.+|+|||||+|+|++..       .+.   ..+      ..+.|...........+..+++|||||..+.       .
T Consensus        17 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f-------~   89 (405)
T 2c78_A           17 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-------I   89 (405)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-------H
T ss_pred             EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-------H
Confidence            5999999999999999731       000   000      1123334444445567789999999998642       2


Q ss_pred             HHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189           65 ELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC  123 (256)
Q Consensus        65 ~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~  123 (256)
                      ..+...+  ..+|++|+|++.+. .........+..+... +    .+ +++|+||+|+.
T Consensus        90 ~~~~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~  141 (405)
T 2c78_A           90 KNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMV  141 (405)
T ss_dssp             HHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred             HHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECcccc
Confidence            2222222  58999999988775 3456666666655543 2    45 88999999985

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.10  E-value=1.7e-10  Score=104.88  Aligned_cols=117  Identities=19%  Similarity=0.308  Sum_probs=61.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-----CCCcceeEEEEe--eeCC--eEEEEEeCCCCCCCCcCc---HHHHHH--
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF-----QSEALRPVMVSR--SKGG--FTLNIIDTPGLVEAGYVN---YQALEL--   66 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~-----~~~t~~~~~~~~--~~~g--~~v~liDTPG~~~~~~~~---~~~~~~--   66 (256)
                      +|++|+|||||+|.|+|......+..     ...|........  ...+  ..+++|||||++......   ..+...  
T Consensus        37 vG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~  116 (418)
T 2qag_C           37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID  116 (418)
T ss_dssp             ECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHH
Confidence            69999999999999999764222210     011111111111  1223  268999999998642110   111111  


Q ss_pred             --HHHh-----------hhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           67 --IKGF-----------LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        67 --i~~~-----------l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                        +..+           +..+.+|++||++......++..+..+++.+..      ..++|+|+||+|+.
T Consensus       117 ~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll  180 (418)
T 2qag_C          117 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL  180 (418)
T ss_dssp             HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSS
T ss_pred             HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCc
Confidence              1111           123557788888443323588888777776643      27899999999985

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.09  E-value=1.5e-10  Score=111.50  Aligned_cols=108  Identities=15%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-----------ccCC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT-----------VNSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~-----------~~~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|.+|+|||||+|+|++.....           +.++      .+.|.........+++..+++|||||..+..   .+.
T Consensus        16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~---~~~   92 (693)
T 2xex_A           16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT---VEV   92 (693)
T ss_dssp             ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC---HHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH---HHH
Confidence            5999999999999999421100           1110      1223333344567788999999999997643   233


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...+      ..+|++|+|++... .....+...++.+.+.     ..++++|+||+|+.
T Consensus        93 ~~~l------~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~  140 (693)
T 2xex_A           93 ERSL------RVLDGAVTVLDAQS-GVEPQTETVWRQATTY-----GVPRIVFVNKMDKL  140 (693)
T ss_dssp             HHHH------HHCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred             HHHH------HHCCEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence            3333      36899999988765 4666777777766553     27899999999985

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.09  E-value=2.8e-10  Score=99.95  Aligned_cols=110  Identities=14%  Similarity=0.106  Sum_probs=65.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC---cHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~---~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+||||||+++.+++.-..........|......... ...++.||||||..+....   ...+.         ++++
T Consensus         5 lGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yy---------r~a~   74 (331)
T 3r7w_B            5 MGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLF---------KSVG   74 (331)
T ss_dssp             ECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHH---------TTCS
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhc---------cCCC
Confidence            699999999999998875321111111112211111111 2468999999999876321   12222         6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhh--cCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGT--FGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~--~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++. +.+.-..+.+.+...  ...+  .++++|.||+|+.
T Consensus        75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~--ipillvgNK~DL~  119 (331)
T 3r7w_B           75 ALVYVIDSQDE-YINAITNLAMIIEYAYKVNPS--INIEVLIHKVDGL  119 (331)
T ss_dssp             EEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTT--CEEEEECCCCCSS
T ss_pred             EEEEEEECCch-HHHHHHHHHHHHHHHhhcCCC--CcEEEEEECcccC
Confidence            99999887763 444433332323221  1223  6899999999985

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.08  E-value=2e-10  Score=103.95  Aligned_cols=110  Identities=14%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcc---------eeEE----------EEeeeCCeEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEAL---------RPVM----------VSRSKGGFTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~---------~~~~----------~~~~~~g~~v~liDTPG~~~~~~~~~   61 (256)
                      +|.+|+|||||+|+|++........+...+.         ....          .......+.+.+|||||..+      
T Consensus        14 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~------   87 (403)
T 3sjy_A           14 VGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV------   87 (403)
T ss_dssp             ECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG------
T ss_pred             ECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH------
Confidence            5999999999999999853211110000000         0000          00011226889999999642      


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       +...+...+  ..+|++++|++.+...........+..+... +.   +|+++|+||+|+.
T Consensus        88 -~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~  142 (403)
T 3sjy_A           88 -LMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVV  142 (403)
T ss_dssp             -GHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred             -HHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECcccc
Confidence             222232222  5899999998887633255556666555443 32   5899999999985

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.07  E-value=2.2e-11  Score=112.91  Aligned_cols=107  Identities=13%  Similarity=0.112  Sum_probs=70.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+++|||||+|+|++..+. .+...+.|.....+...+++..+++|||||..+........         ...+|+++
T Consensus        10 vGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~---------~~~aD~aI   79 (501)
T 1zo1_I           10 MGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARG---------AQATDIVV   79 (501)
T ss_dssp             EESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSS---------SBSCSSEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHH---------HhhCCEEE
Confidence            589999999999999975432 22223344444344456678889999999987654322111         14789999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++. ........+..+... +    .|+++++||+|+.
T Consensus        80 LVVda~~g-~~~qT~e~l~~~~~~-~----vPiIVviNKiDl~  116 (501)
T 1zo1_I           80 LVVAADDG-VMPQTIEAIQHAKAA-Q----VPVVVAVNKIDKP  116 (501)
T ss_dssp             EEEETTTB-SCTTTHHHHHHHHHT-T----CCEEEEEECSSSS
T ss_pred             EEeecccC-ccHHHHHHHHHHHhc-C----ceEEEEEEecccc
Confidence            99888763 333444444444332 2    6899999999985

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.07  E-value=2.6e-10  Score=106.63  Aligned_cols=108  Identities=14%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT---------------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~   59 (256)
                      +|.+|+|||||+|+|++.....               +.+      ..+.|.........+++..+++|||||..+..  
T Consensus        19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~--   96 (529)
T 2h5e_A           19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFS--   96 (529)
T ss_dssp             EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCC--
T ss_pred             ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHH--
Confidence            5899999999999999642111               000      01112222233456788999999999997643  


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       ...    ..++  ..+|++|+|++... ........+++.+...   +  .|+++|+||+|+.
T Consensus        97 -~~~----~~~l--~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~---~--ipiivviNK~Dl~  147 (529)
T 2h5e_A           97 -EDT----YRTL--TAVDCCLMVIDAAK-GVEDRTRKLMEVTRLR---D--TPILTFMNKLDRD  147 (529)
T ss_dssp             -HHH----HHGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHTTT---T--CCEEEEEECTTSC
T ss_pred             -HHH----HHHH--HHCCEEEEEEeCCc-cchHHHHHHHHHHHHc---C--CCEEEEEcCcCCc
Confidence             122    2222  58999999988765 3455555555444322   2  6899999999985

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.05  E-value=6.2e-12  Score=112.70  Aligned_cols=114  Identities=18%  Similarity=0.185  Sum_probs=71.1

Q ss_pred             CCCCCCCHHHHHHHHhCC-----CcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcC
Q 025189            1 MGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~   74 (256)
                      +|.+|+|||||+|+|++.     ..+.++..+++|........  . ..+.++||||+.+.....+. ..+.++.++...
T Consensus       168 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~  244 (369)
T 3ec1_A          168 VGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMAHFVDARDLKIITPKR  244 (369)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSS
T ss_pred             EcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhccc
Confidence            599999999999999997     45567778888876655432  2 23689999999876422211 112233333446


Q ss_pred             CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|.++|+++.+..-+.. ....++   ...+.  ..++++++||+|..
T Consensus       245 ~i~~~~~~l~~~~~~~~g-~l~~l~---~l~~~--~~~~~~v~~k~d~~  287 (369)
T 3ec1_A          245 EIHPRVYQLNEGQTLFFG-GLARLD---YIKGG--RRSFVCYMANELTV  287 (369)
T ss_dssp             CCCCEEEEECTTEEEEET-TTEEEE---EEESS--SEEEEEEECTTSCE
T ss_pred             ccCceEEEEcCCceEEEC-CEEEEE---EccCC--CceEEEEecCCccc
Confidence            899999996553211111 111111   11122  26899999999975

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.05  E-value=1.1e-10  Score=107.38  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC-ccc-----------------------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVT-----------------------VNS------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~-----------------------~~~------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|.+++|||||+|+|++.. ...                       +.+      ..+.|..........++..+++|||
T Consensus        13 iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDt   92 (458)
T 1f60_A           13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDA   92 (458)
T ss_dssp             EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEEC
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEEC
Confidence            5899999999999998641 000                       000      0223433333455667889999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCH-------HHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD-------LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~-------~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+       +...+...+  ..+|++|+|++++.. ..+       .....+..+. ..+-   +++++|+||+|+.
T Consensus        93 PGh~~-------f~~~~~~~~--~~aD~~ilVvda~~g-~~~~sf~~~~qt~~~~~~~~-~~~v---~~iivviNK~Dl~  158 (458)
T 1f60_A           93 PGHRD-------FIKNMITGT--SQADCAILIIAGGVG-EFEAGISKDGQTREHALLAF-TLGV---RQLIVAVNKMDSV  158 (458)
T ss_dssp             CCCTT-------HHHHHHHSS--SCCSEEEEEEECSHH-HHHHHTCTTSHHHHHHHHHH-HTTC---CEEEEEEECGGGG
T ss_pred             CCcHH-------HHHHHHhhh--hhCCEEEEEEeCCcC-ccccccCcchhHHHHHHHHH-HcCC---CeEEEEEEccccc
Confidence            99753       233333332  689999999776631 111       2333333222 2221   4599999999985

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.04  E-value=6.8e-10  Score=100.79  Aligned_cols=115  Identities=21%  Similarity=0.240  Sum_probs=75.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-eEEEEEeCCCCCCCCc----CcHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGY----VNYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~liDTPG~~~~~~----~~~~~~~~i~~~l~~~~   75 (256)
                      +|.+|||||||+|+|.+... .++.++.+|..+......+++ ..++++||||+.+...    ....+++.+      ..
T Consensus       163 VG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~------er  235 (416)
T 1udx_A          163 VGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI------AR  235 (416)
T ss_dssp             ECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH------TS
T ss_pred             ECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH------HH
Confidence            69999999999999999854 455566666666666666665 7899999999976421    223333333      47


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++.+|++++++ .+....-....+.+..+...-..+|.++|+||+|..
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~  282 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  282 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence            89999998886 221122223334443331111137899999999974

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.04  E-value=7.5e-12  Score=112.13  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC------cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcH-HHHHHHHHhhhc
Q 025189            1 MGKGGVGKSSTVNSVIGER------VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QALELIKGFLLN   73 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~-~~~~~i~~~l~~   73 (256)
                      +|.+|+|||||+|+|++..      .+.++..+++|..........   .+.++||||+.+.....+ ...+.++.++..
T Consensus       166 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~  242 (368)
T 3h2y_A          166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLKLITPT  242 (368)
T ss_dssp             EEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHHHHSCS
T ss_pred             ecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHHHhccc
Confidence            5999999999999999963      334667777777665543222   268999999988652221 112344444445


Q ss_pred             CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..++.++|+++.+..-+.. ....++.   ..+.  ..++++++||+|..
T Consensus       243 ~~i~~~~~~l~~~~~~~~g-~l~~~d~---l~~~--~~~~~~v~nk~d~~  286 (368)
T 3h2y_A          243 KEIKPMVFQLNEEQTLFFS-GLARFDY---VSGG--RRAFTCHFSNRLTI  286 (368)
T ss_dssp             SCCCCEEEEECTTEEEEET-TTEEEEE---EESS--SEEEEEEECTTSCE
T ss_pred             cccCceEEEEcCCCEEEEc-ceEEEEE---ecCC--CceEEEEecCcccc
Confidence            6889999995543211111 1111111   1122  26899999999975

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.03  E-value=7.1e-10  Score=100.13  Aligned_cols=108  Identities=11%  Similarity=0.102  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc----------cc-----CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT----------VN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~----------~~-----~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..|+|||||+|+|++.....          ..     ...+.|..........++..+++|||||..+       +..
T Consensus         9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~-------f~~   81 (397)
T 1d2e_A            9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD-------YVK   81 (397)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-------HHH
T ss_pred             EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-------HHH
Confidence            5999999999999999741100          00     0112233333333445678999999999742       333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++++|++.+. .......+.+..+... +    .+ +++|+||+|+.
T Consensus        82 ~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----vp~iivviNK~Dl~  132 (397)
T 1d2e_A           82 NMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQI-G----VEHVVVYVNKADAV  132 (397)
T ss_dssp             HHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred             HHHhhH--hhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCeEEEEEECcccC
Confidence            443333  58999999988875 3445555555554432 2    45 78999999985

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.01  E-value=4.7e-10  Score=102.49  Aligned_cols=110  Identities=15%  Similarity=0.197  Sum_probs=64.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC--ccc------------c----------cC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGER--VVT------------V----------NS------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~--~~~------------~----------~~------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|..|+|||||+|+|++..  ...            .          .+      ..+.|...........+..+++|||
T Consensus        12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDt   91 (435)
T 1jny_A           12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDA   91 (435)
T ss_dssp             EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECCC
T ss_pred             EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEEC
Confidence            5899999999999998641  100            0          00      1223444444455667889999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC------CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+.       ...+...+  ..+|++++|+++++..+      .....+.+..+.. .+-   +++++|+||+|+.
T Consensus        92 pG~~~f-------~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~iivviNK~Dl~  157 (435)
T 1jny_A           92 PGHRDF-------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLIVAVNKMDLT  157 (435)
T ss_dssp             SSSTTH-------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCEEEEECGGGS
T ss_pred             CCcHHH-------HHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEEEEcccCC
Confidence            998652       22333333  68999999988775211      1123333332222 231   4789999999985

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.01  E-value=5.3e-10  Score=100.11  Aligned_cols=97  Identities=15%  Similarity=0.180  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+++|||||+|+|+..         +.|........+.++..+++|||||..+..   ......+      ..+|+++
T Consensus        27 iG~~d~GKSTL~~~L~~~---------giTi~~~~~~~~~~~~~i~iiDtPGh~~f~---~~~~~~~------~~aD~ai   88 (370)
T 2elf_A           27 IGTEKSGRTSLAANLGKK---------GTSSDITMYNNDKEGRNMVFVDAHSYPKTL---KSLITAL------NISDIAV   88 (370)
T ss_dssp             EESTTSSHHHHHHTTSEE---------EEESSSEEEEECSSSSEEEEEECTTTTTCH---HHHHHHH------HTCSEEE
T ss_pred             ECCCCCCHHHHHHHHHhC---------CEEEEeeEEEEecCCeEEEEEECCChHHHH---HHHHHHH------HHCCEEE
Confidence            589999999999999911         223334445566778899999999986531   1222222      4899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccE-EEEEe-cccC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS-LLVLT-HAQL  122 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~-ivv~T-k~D~  122 (256)
                      +|++ +. ....+..+.+..+... +    .+. ++++| |+|+
T Consensus        89 lVvd-~~-g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           89 LCIP-PQ-GLDAHTGECIIALDLL-G----FKHGIIALTRSDST  125 (370)
T ss_dssp             EEEC-TT-CCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred             EEEc-CC-CCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence            9977 43 3455556665555433 3    344 89999 9997

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.01  E-value=2.2e-10  Score=102.06  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=54.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCc----C
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGY----V   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~----~   59 (256)
                      +|.+|||||||+|+|++.. +.+++++.+|..+......+++                 ..+.+|||||+..+..    .
T Consensus         8 VG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl   86 (363)
T 1jal_A            8 VGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL   86 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred             ECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchH
Confidence            6999999999999999987 4667777777666544444444                 5789999999986531    1


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDA   87 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~   87 (256)
                      ...++..+      +++|++++|++..+
T Consensus        87 ~~~fl~~i------r~ad~il~VvD~~~  108 (363)
T 1jal_A           87 GNKFLANI------RETDAIGHVVRCFE  108 (363)
T ss_dssp             TCCHHHHH------HTCSEEEEEEECSC
T ss_pred             HHHHHHHH------HhcCeEEEEEecCC
Confidence            12334444      48999999988764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.01  E-value=2.9e-09  Score=96.44  Aligned_cols=110  Identities=13%  Similarity=0.121  Sum_probs=66.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc--CCCCCcceeEEEEeee---------------C--------CeEEEEEeCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN--SFQSEALRPVMVSRSK---------------G--------GFTLNIIDTPGLVE   55 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~--~~~~~t~~~~~~~~~~---------------~--------g~~v~liDTPG~~~   55 (256)
                      +|..++|||||+|+|+|.......  ...+.|.........+               .        ...+++|||||.. 
T Consensus        16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~-   94 (410)
T 1kk1_A           16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHE-   94 (410)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHH-
T ss_pred             ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChH-
Confidence            599999999999999986432111  1122233322211111               1        1679999999953 


Q ss_pred             CCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           56 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                            .+...+...+  ..+|++|+|+++++.-......+.+..+... +.   +++++|+||+|+.
T Consensus        95 ------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~  150 (410)
T 1kk1_A           95 ------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELV  150 (410)
T ss_dssp             ------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred             ------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCC
Confidence                  3333333322  4679999998877522245555555544433 32   5899999999985

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.00  E-value=4.4e-09  Score=95.21  Aligned_cols=111  Identities=14%  Similarity=0.128  Sum_probs=65.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC--CCCCcceeEEEEeee---------------C--------CeEEEEEeCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSK---------------G--------GFTLNIIDTPGLVE   55 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~--~~~~t~~~~~~~~~~---------------~--------g~~v~liDTPG~~~   55 (256)
                      +|..++|||||+|+|+|........  ..+.|.........+               +        ...+++|||||.. 
T Consensus        14 iG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~-   92 (408)
T 1s0u_A           14 VGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHE-   92 (408)
T ss_dssp             ESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHH-
T ss_pred             EcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHH-
Confidence            5999999999999999864321111  122233222111111               1        1679999999952 


Q ss_pred             CCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           56 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                            .+...+...  ...+|++|+|++++..-......+.+..+. .++.   +++++|+||+|+.+
T Consensus        93 ------~f~~~~~~~--~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~---~~iivv~NK~Dl~~  149 (408)
T 1s0u_A           93 ------TLMATMLSG--ASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGI---DKIIIVQNKIDLVD  149 (408)
T ss_dssp             ------HHHHHHHTT--CSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTC---CCEEEEEECTTSSC
T ss_pred             ------HHHHHHHHh--HhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCC---CeEEEEEEccCCCC
Confidence                  333333322  246799999988775222455555555443 3332   58999999999863

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.99  E-value=7.4e-10  Score=106.75  Aligned_cols=108  Identities=12%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-----c------ccC------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV-----T------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~-----~------~~~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|.+|+|||||+|+|+.....     .      +.+      ....|.........+++..+++|||||..+..   ...
T Consensus        18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~---~~~   94 (691)
T 1dar_A           18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT---IEV   94 (691)
T ss_dssp             EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH---HHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH---HHH
Confidence            589999999999999832100     0      000      11223333344566788999999999996532   223


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...+      ..+|++|+|++... .........+..+.+.     ..+.++|+||+|+.
T Consensus        95 ~~~l------~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~  142 (691)
T 1dar_A           95 ERSM------RVLDGAIVVFDSSQ-GVEPQSETVWRQAEKY-----KVPRIAFANKMDKT  142 (691)
T ss_dssp             HHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred             HHHH------HHCCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence            3333      36899999988775 4556666666655543     27899999999985

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.98  E-value=2.1e-09  Score=92.16  Aligned_cols=117  Identities=21%  Similarity=0.300  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-------CCCCcceeEE-EEeeeCC--eEEEEEeCCCCCCCCcC---cHHHHHH-
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS-------FQSEALRPVM-VSRSKGG--FTLNIIDTPGLVEAGYV---NYQALEL-   66 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~-------~~~~t~~~~~-~~~~~~g--~~v~liDTPG~~~~~~~---~~~~~~~-   66 (256)
                      +|++|+|||||+|.|+|......+.       ...+...... +.....+  ..++++|+||++.....   .+...+. 
T Consensus         8 vG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~   87 (270)
T 3sop_A            8 VGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYI   87 (270)
T ss_dssp             EESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHHH
Confidence            6999999999999999964322221       1111111111 1111122  26799999999874221   1111111 


Q ss_pred             ---HHHh----hh--------cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           67 ---IKGF----LL--------NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        67 ---i~~~----l~--------~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                         ....    ++        ...+++.||+++-....++..|..+++.+.+.      .++++|+||+|..
T Consensus        88 ~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l  153 (270)
T 3sop_A           88 NEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM  153 (270)
T ss_dssp             HHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred             HHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence               1111    11        12468888886544445888998888887654      6899999999985

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.97  E-value=2.8e-11  Score=114.65  Aligned_cols=110  Identities=12%  Similarity=0.074  Sum_probs=51.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|.+|+|||||+|+|++........                              ..+.|..........++..++||||
T Consensus       183 iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDT  262 (592)
T 3mca_A          183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDA  262 (592)
T ss_dssp             ECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCEE
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEEC
Confidence            5999999999999997532111100                              1233444444555667889999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC----C--CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR----V--DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r----~--~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+........   +      ..+|++|+|++++...    +  .......+..+.. .|-   +++|+|+||+|+.
T Consensus       263 PGh~~f~~~~~~~---~------~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~iIvviNKiDl~  328 (592)
T 3mca_A          263 PGHRDFISGMIAG---A------SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEIVVSVNKLDLM  328 (592)
T ss_dssp             ESSSEEEEECCC----------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCEEEEEECGGGG
T ss_pred             CChHHHHHHHHHH---H------hhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEEEeccccc
Confidence            9987542211111   1      4789999997776421    2  3344444444433 232   3599999999985

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.95  E-value=1.7e-09  Score=94.10  Aligned_cols=117  Identities=18%  Similarity=0.258  Sum_probs=56.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC------CCccee--EEEEeeeC--CeEEEEEeCCCCCCCC-------cCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRP--VMVSRSKG--GFTLNIIDTPGLVEAG-------YVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~------~~t~~~--~~~~~~~~--g~~v~liDTPG~~~~~-------~~~~~~   63 (256)
                      +|++|+|||||+|.|+|...+..+...      ..|...  ..+.....  ...+++|||||+++..       ......
T Consensus        24 vG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l  103 (301)
T 2qnr_A           24 VGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI  103 (301)
T ss_dssp             EEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHH
Confidence            699999999999999997443322110      011111  11112222  2478999999996431       011100


Q ss_pred             H----HHHHHh-------hhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 L----ELIKGF-------LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~----~~i~~~-------l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .    ..++..       +....++++||++......++..+.++++.+.    ..  .++++|+||+|+.
T Consensus       104 ~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~~--~~iilV~~K~Dl~  168 (301)
T 2qnr_A          104 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----TT--SCEEEEECCGGGS
T ss_pred             HHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----hc--CCEEEEEEeCCCC
Confidence            0    111111       11234577777755433347777755544432    22  5899999999985

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.93  E-value=3.8e-09  Score=102.00  Aligned_cols=108  Identities=15%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--c---c------cCC------CCCcceeEEEEeeeCC-------eEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--T---V------NSF------QSEALRPVMVSRSKGG-------FTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--~---~------~~~------~~~t~~~~~~~~~~~g-------~~v~liDTPG~~~~   56 (256)
                      +|..|+|||||+++|+.....  .   +      .+.      .+.|.........+++       ..++||||||..+.
T Consensus        16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df   95 (704)
T 2rdo_7           16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF   95 (704)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccch
Confidence            699999999999999753210  0   0      000      1122222333445555       88999999998753


Q ss_pred             CcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           57 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        57 ~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .   .+....+      ..+|++|+|++.+. .........++.+...     ..+.++|+||+|+.
T Consensus        96 ~---~~~~~~l------~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~  147 (704)
T 2rdo_7           96 T---IEVERSM------RVLDGAVMVYCAVG-GVQPQSETVWRQANKY-----KVPRIAFVNKMDRM  147 (704)
T ss_pred             H---HHHHHHH------HHCCEEEEEEeCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcc
Confidence            2   1222222      47899999987765 3444445555544332     26899999999985

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.93  E-value=1.4e-09  Score=103.04  Aligned_cols=107  Identities=11%  Similarity=0.101  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcce--eEEEEee----------------eCCeEEEEEeCCCCCCCCcCcHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALR--PVMVSRS----------------KGGFTLNIIDTPGLVEAGYVNYQ   62 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~--~~~~~~~----------------~~g~~v~liDTPG~~~~~~~~~~   62 (256)
                      +|.+|+|||||+|+|++..+.... ..+.|..  .......                +....+++|||||..+.......
T Consensus        11 vGh~d~GKTTLl~~L~~~~v~~~e-~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r   89 (594)
T 1g7s_A           11 LGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKR   89 (594)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCS
T ss_pred             ECCCCCcHHHHHHHHhcccCcccc-CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHH
Confidence            699999999999999986432111 1112211  1111111                11225899999999775432211


Q ss_pred             HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                             .  ...+|++++|+++++ .+.......++.+...     ..|+++|+||+|+.
T Consensus        90 -------~--~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~  135 (594)
T 1g7s_A           90 -------G--GALADLAILIVDINE-GFKPQTQEALNILRMY-----RTPFVVAANKIDRI  135 (594)
T ss_dssp             -------S--SBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred             -------H--HhhCCEEEEEEECCC-CccHhHHHHHHHHHHc-----CCeEEEEecccccc
Confidence                   1  146899999988876 3556666666665542     27899999999985

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.93  E-value=7e-10  Score=102.30  Aligned_cols=110  Identities=11%  Similarity=0.032  Sum_probs=58.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT------------------------VNS------FQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|..++|||||+|+|++.....                        +.+      ..+.|..........++..+++|||
T Consensus        49 iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDt  128 (467)
T 1r5b_A           49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDA  128 (467)
T ss_dssp             EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEEC
Confidence            5899999999999997421100                        000      0122333333345567889999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC----C--HHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV----D--DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~----~--~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..+..       ..+...+  ..+|++|+|++++...+    .  ......+..+. ..|-   +++++|+||+|+.
T Consensus       129 PGh~~f~-------~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~v---p~iivviNK~Dl~  194 (467)
T 1r5b_A          129 PGHKGYV-------TNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGI---NHLVVVINKMDEP  194 (467)
T ss_dssp             CC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTC---SSEEEEEECTTST
T ss_pred             CCcHHHH-------HHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCC---CEEEEEEECccCC
Confidence            9986432       2222222  58999999988775311    0  12333333322 2231   3499999999984

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.90  E-value=9.8e-10  Score=94.84  Aligned_cols=59  Identities=22%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ   62 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~   62 (256)
                      +|.+|||||||+|+|+|...+.++..+++|...+...  . +..+.++||||+..+...+.+
T Consensus       126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V-GKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             EESTTSSHHHHHHHHHTSCCC------------CCEE--E-TTTEEEEECCCCCCSCCCCHH
T ss_pred             EecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e-CCCEEEEECcCcCCCCCCCHH
Confidence            5999999999999999998878888877777654322  2 446899999999987766554

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.89  E-value=1.3e-09  Score=98.19  Aligned_cols=79  Identities=23%  Similarity=0.257  Sum_probs=43.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCcCcH--
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGYVNY--   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~~~~--   61 (256)
                      +|.+|||||||+|+|+|... .++.++.+|..+......+.+                 ..+.+|||||+..+....+  
T Consensus        28 VG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~gl  106 (396)
T 2ohf_A           28 VGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGL  106 (396)
T ss_dssp             ECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------
T ss_pred             ECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHH
Confidence            69999999999999999875 667777777766655554443                 3589999999987543211  


Q ss_pred             --HHHHHHHHhhhcCCCcEEEEEEeCC
Q 025189           62 --QALELIKGFLLNKTIDVLLYADRLD   86 (256)
Q Consensus        62 --~~~~~i~~~l~~~~~d~vL~v~~~d   86 (256)
                        .++..+      ..+|++++|++..
T Consensus       107 g~~~l~~i------r~aD~Il~VvD~~  127 (396)
T 2ohf_A          107 GNAFLSHI------SACDGIFHLTRAF  127 (396)
T ss_dssp             CCHHHHHH------HTSSSEEEEEEC-
T ss_pred             HHHHHHHH------HhcCeEEEEEecC
Confidence              334444      4899999997765

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.87  E-value=2.3e-09  Score=105.42  Aligned_cols=108  Identities=17%  Similarity=0.252  Sum_probs=67.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC---------------CCCcceeEEEEeeeC----------------CeEEEEEe
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKG----------------GFTLNIID   49 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~---------------~~~t~~~~~~~~~~~----------------g~~v~liD   49 (256)
                      +|..|+|||||+|+|++......+..               .+.|.........+.                +..++|||
T Consensus        25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD  104 (842)
T 1n0u_A           25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID  104 (842)
T ss_dssp             ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence            59999999999999997532111100               011221111222222                67899999


Q ss_pred             CCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           50 TPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |||..+...   +....+      ..+|++|+|++... .........+..+...   +  .+.++|+||+|+.
T Consensus       105 TPG~~df~~---~~~~~l------~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~---~--~p~ilviNK~D~~  163 (842)
T 1n0u_A          105 SPGHVDFSS---EVTAAL------RVTDGALVVVDTIE-GVCVQTETVLRQALGE---R--IKPVVVINKVDRA  163 (842)
T ss_dssp             CCCCCSSCH---HHHHHH------HTCSEEEEEEETTT-BSCHHHHHHHHHHHHT---T--CEEEEEEECHHHH
T ss_pred             CcCchhhHH---HHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc---C--CCeEEEEECCCcc
Confidence            999987532   233333      47999999988775 4455555555444332   2  6889999999974

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.87  E-value=2.7e-09  Score=100.93  Aligned_cols=108  Identities=14%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--------cCC------CCCcceeEEEEeee---C--CeEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV--------NSF------QSEALRPVMVSRSK---G--GFTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~--------~~~------~~~t~~~~~~~~~~---~--g~~v~liDTPG~~~~~~~~~   61 (256)
                      +|..|+|||||+|+|++......        .+.      .+.|.........+   +  +..+++|||||..+..   .
T Consensus        12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~---~   88 (600)
T 2ywe_A           12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFS---Y   88 (600)
T ss_dssp             ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGH---H
T ss_pred             ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHH---H
Confidence            59999999999999986321100        000      01121111112222   2  2578899999997632   1


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +....+      ..+|++|+|++.+. .........+......   +  .|+++|+||+|+.
T Consensus        89 ev~r~l------~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~  138 (600)
T 2ywe_A           89 EVSRAL------AACEGALLLIDASQ-GIEAQTVANFWKAVEQ---D--LVIIPVINKIDLP  138 (600)
T ss_dssp             HHHHHH------HTCSEEEEEEETTT-BCCHHHHHHHHHHHHT---T--CEEEEEEECTTST
T ss_pred             HHHHHH------HhCCEEEEEEECCC-CccHHHHHHHHHHHHC---C--CCEEEEEeccCcc
Confidence            222222      47899999988775 3444444444433332   2  6899999999984

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.87  E-value=7.4e-09  Score=93.96  Aligned_cols=116  Identities=17%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--cC-CCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCc-----------HHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV--NS-FQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVN-----------YQAL   64 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~--~~-~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~-----------~~~~   64 (256)
                      +|++|+|||||+|.|+|......  .. .+..+.....+.....+.  .++++|+||++......           ..+.
T Consensus        48 vG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~  127 (427)
T 2qag_B           48 VGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE  127 (427)
T ss_dssp             ECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHH
Confidence            69999999999999999753211  11 112222222222222232  68999999998642110           1111


Q ss_pred             HHHHHhhh---------cCCCcEEEE-EEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           65 ELIKGFLL---------NKTIDVLLY-ADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        65 ~~i~~~l~---------~~~~d~vL~-v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..+.....         ...+|+++| +.+.. ..++..|..+++.|.    .  ..++|+|+||+|..
T Consensus       128 ~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~-~~l~~~Dieilk~L~----~--~~~vI~Vi~KtD~L  189 (427)
T 2qag_B          128 AYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG-HSLKSLDLVTMKKLD----S--KVNIIPIIAKADAI  189 (427)
T ss_dssp             HHHHHC--CCCCCCCSCC--CCEEEEEECCCC----CHHHHHHHHHTC----S--CSEEEEEESCGGGS
T ss_pred             HHHHHHHhhhhhhcccccccccEEEEEEeCCC-CCCCHHHHHHHHHHh----h--CCCEEEEEcchhcc
Confidence            11222110         112455554 43322 247888887777664    1  27999999999975

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.86  E-value=4e-09  Score=94.25  Aligned_cols=80  Identities=18%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee---------------------CCeEEEEEeCCCCCCCCc-
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---------------------GGFTLNIIDTPGLVEAGY-   58 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---------------------~g~~v~liDTPG~~~~~~-   58 (256)
                      +|.+|||||||+|+|++.. +.+++++.+|..+......+                     .+..+.+|||||+..+.. 
T Consensus         7 VG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~   85 (368)
T 2dby_A            7 VGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHK   85 (368)
T ss_dssp             ECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCS
T ss_pred             ECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccc
Confidence            6999999999999999875 34566666665554433332                     245799999999987532 


Q ss_pred             ---CcHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 025189           59 ---VNYQALELIKGFLLNKTIDVLLYADRLDA   87 (256)
Q Consensus        59 ---~~~~~~~~i~~~l~~~~~d~vL~v~~~d~   87 (256)
                         ....++..++      .+|++++|++..+
T Consensus        86 ~~~lg~~fl~~ir------~ad~ii~VvD~~~  111 (368)
T 2dby_A           86 GEGLGNQFLAHIR------EVAAIAHVLRCFP  111 (368)
T ss_dssp             SSCTTHHHHHHHH------TCSEEEEEEECCC
T ss_pred             cchHHHHHHHHHH------hCCEEEEEEECCC
Confidence               2345555554      8999999988764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.85  E-value=2.3e-09  Score=101.55  Aligned_cols=108  Identities=18%  Similarity=0.149  Sum_probs=58.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--------cCC------CCCcceeEEEEeeeC-----CeEEEEEeCCCCCCCCcCcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV--------NSF------QSEALRPVMVSRSKG-----GFTLNIIDTPGLVEAGYVNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~--------~~~------~~~t~~~~~~~~~~~-----g~~v~liDTPG~~~~~~~~~   61 (256)
                      +|..|+|||||+++|++......        .+.      .+.|.........+.     +..+++|||||..+..   .
T Consensus        10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~---~   86 (599)
T 3cb4_D           10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS---Y   86 (599)
T ss_dssp             ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH---H
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH---H
Confidence            59999999999999986321110        000      112222222233332     3678999999986532   1


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           62 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        62 ~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +....+      ..+|++++|++.++ .........+......   +  .|+++|+||+|+.
T Consensus        87 ev~~~l------~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~  136 (599)
T 3cb4_D           87 EVSRSL------AACEGALLVVDAGQ-GVEAQTLANCYTAMEM---D--LEVVPVLNKIDLP  136 (599)
T ss_dssp             HHHHHH------HHCSEEEEEEETTT-CCCTHHHHHHHHHHHT---T--CEEEEEEECTTST
T ss_pred             HHHHHH------HHCCEEEEEEECCC-CCCHHHHHHHHHHHHC---C--CCEEEeeeccCcc
Confidence            222222      36899999988775 3334444444333322   2  6899999999985

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.85  E-value=2.1e-09  Score=96.80  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=62.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCcC----
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGYV----   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~~----   59 (256)
                      +|.+|||||||+|+|+|...+.++.++.+|..+......+.|                 ..+.++||||+......    
T Consensus        26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L  105 (392)
T 1ni3_A           26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL  105 (392)
T ss_dssp             EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred             ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHH
Confidence            699999999999999998876788888888888777666665                 46899999999875332    


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDA   87 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~   87 (256)
                      ...++..+      ..+|++++|++..+
T Consensus       106 ~~~fl~~i------r~~d~il~Vvd~~~  127 (392)
T 1ni3_A          106 GNAFLSHV------RAVDAIYQVVRAFD  127 (392)
T ss_dssp             CHHHHHHH------TTCSEEEEEEECCC
T ss_pred             HHHHHHHH------HHHHHHHHHHhccc
Confidence            23444444      48999999987753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.80  E-value=1.7e-09  Score=96.06  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=35.2

Q ss_pred             eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189           40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .+|..+.++||||+....   .    .+.     ..+|++++|++....   . +.+.++.  ..+    ..+.++|+||
T Consensus       164 ~~~~~~iliDT~Gi~~~~---~----~l~-----~~~d~vl~V~d~~~~---~-~~~~i~~--~il----~~~~ivVlNK  221 (349)
T 2www_A          164 GAGYDIILIETVGVGQSE---F----AVA-----DMVDMFVLLLPPAGG---D-ELQGIKR--GII----EMADLVAVTK  221 (349)
T ss_dssp             HTTCSEEEEECCCC--CH---H----HHH-----TTCSEEEEEECCC------------------C----CSCSEEEECC
T ss_pred             cCCCCEEEEECCCcchhh---h----hHH-----hhCCEEEEEEcCCcc---h-hHHHhHH--HHH----hcCCEEEEee
Confidence            367889999999986431   1    122     589999999655431   1 1111111  122    1477999999


Q ss_pred             ccCC
Q 025189          120 AQLC  123 (256)
Q Consensus       120 ~D~~  123 (256)
                      +|+.
T Consensus       222 ~Dl~  225 (349)
T 2www_A          222 SDGD  225 (349)
T ss_dssp             CSGG
T ss_pred             ecCC
Confidence            9984

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.78  E-value=1e-08  Score=102.52  Aligned_cols=108  Identities=11%  Similarity=0.067  Sum_probs=66.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCc------cc---cc------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERV------VT---VN------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~------~~---~~------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+|+|++...      +.   ..      ...+.|...........+..+++|||||..+       +..
T Consensus       302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed-------F~~  374 (1289)
T 3avx_A          302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD-------YVK  374 (1289)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH-------HHH
T ss_pred             EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH-------HHH
Confidence            58999999999999997411      00   00      0111222222223345678999999999753       333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~  123 (256)
                      .+...+  ..+|++|+|+++++. ...+..+.+..+... +    .| +++|+||+|+.
T Consensus       375 ~mi~ga--s~AD~aILVVDAtdG-v~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv  425 (1289)
T 3avx_A          375 NMITGA--AQMDGAILVVAATDG-PMPQTREHILLGRQV-G----VPYIIVFLNKCDMV  425 (1289)
T ss_dssp             HHHHTS--CCCSEEEEEEETTTC-SCTTHHHHHHHHHHH-T----CSCEEEEEECCTTC
T ss_pred             HHHHHH--hhCCEEEEEEcCCcc-CcHHHHHHHHHHHHc-C----CCeEEEEEeecccc
Confidence            333332  589999999888763 334455555555443 3    45 78999999985

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.78  E-value=1.3e-08  Score=97.67  Aligned_cols=108  Identities=16%  Similarity=0.191  Sum_probs=72.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--ccc---------C------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--TVN---------S------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--~~~---------~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|.+|+|||||+++|++....  ..+         .      ..+.|...........+..+++|||||..+..   ...
T Consensus        15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~---~~~   91 (665)
T 2dy1_A           15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV---GEI   91 (665)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH---HHH
T ss_pred             ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH---HHH
Confidence            589999999999999953211  000         0      01223344455566778899999999986532   223


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...+      ..+|++++|++... ........+++.+... +    .+.++|+||+|+.
T Consensus        92 ~~~l------~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~  139 (665)
T 2dy1_A           92 RGAL------EAADAALVAVSAEA-GVQVGTERAWTVAERL-G----LPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred             HHHH------hhcCcEEEEEcCCc-ccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence            3233      36899999988664 4666677777766553 2    7899999999984

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.71  E-value=1.6e-08  Score=95.30  Aligned_cols=97  Identities=23%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-cccCC-CCCcceeEEEEe---eeCCeEEEEEeCCCCCCCCc-Cc--HHHHHHHHHhhh
Q 025189            1 MGKGGVGKSSTVNSVIGERVV-TVNSF-QSEALRPVMVSR---SKGGFTLNIIDTPGLVEAGY-VN--YQALELIKGFLL   72 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~-~~~~~-~~~t~~~~~~~~---~~~g~~v~liDTPG~~~~~~-~~--~~~~~~i~~~l~   72 (256)
                      +|.+|||||||+|+|+|.... .++.. .++|.....+..   ...+..+.++||||+.+... ..  ...+-.+...++
T Consensus        44 vG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~lls  123 (592)
T 1f5n_A           44 VGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLS  123 (592)
T ss_dssp             EEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhc
Confidence            699999999999999998753 22221 133333322211   23578899999999997543 11  111112222222


Q ss_pred             cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhh
Q 025189           73 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT  104 (256)
Q Consensus        73 ~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~  104 (256)
                          ++++|-  ... .+++.+...+..+.+.
T Consensus       124 ----s~lv~n--~~~-~i~~~dl~~l~~v~e~  148 (592)
T 1f5n_A          124 ----STFVYN--SIG-TINQQAMDQLYYVTEL  148 (592)
T ss_dssp             ----SEEEEE--EES-CSSHHHHHTTHHHHTH
T ss_pred             ----CeEEEE--CCC-CccHHHHHHHHHHHHH
Confidence                233333  332 5788888777665443

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.66  E-value=2.3e-09  Score=90.94  Aligned_cols=47  Identities=15%  Similarity=0.143  Sum_probs=30.4

Q ss_pred             CCcEEEEEEeCCCC--CCCHHHHHHHHHHHhhc-CCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAY--RVDDLDRQIIKAVTGTF-GKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~--r~~~~~~~~~~~l~~~~-g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++++|+++++.  ...+.-..++..+.+.. ..+  .|+++|+||+|+.
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~  211 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEG  211 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGB
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccc
Confidence            48999999988763  22222334555555442 122  7999999999983

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.65  E-value=7.1e-09  Score=88.51  Aligned_cols=58  Identities=24%  Similarity=0.315  Sum_probs=37.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc-CcH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNY   61 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~-~~~   61 (256)
                      +|.+|+|||||+|+|+|...+.++..+++|...+...  . +..+.+|||||+.+... .+.
T Consensus       105 vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~~~~~~  163 (262)
T 3cnl_A          105 VGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS--L-ENGVKILDTPGILYKNIFSED  163 (262)
T ss_dssp             EESTTSSHHHHHHHHHTTCC----------CCSCEEE--C-TTSCEEESSCEECCCCCCSHH
T ss_pred             eCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE--e-CCCEEEEECCCcccCcCCCCh
Confidence            5999999999999999988766777666666554322  1 34678999999998765 443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.64  E-value=2e-08  Score=88.86  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=37.1

Q ss_pred             eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189           40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .++..+.+|||||+.+..   .    .+.     ..+|++|+|++.+..  .  +.+.++.  ...    ..+.++|+||
T Consensus       146 ~~~~~i~liDTpG~~~~~---~----~~~-----~~aD~vl~Vvd~~~~--~--~~~~l~~--~~~----~~p~ivv~NK  203 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQSE---T----EVA-----RMVDCFISLQIAGGG--D--DLQGIKK--GLM----EVADLIVINK  203 (341)
T ss_dssp             HTTCSEEEEEEECCTTHH---H----HHH-----TTCSEEEEEECC----------CCCCH--HHH----HHCSEEEECC
T ss_pred             ccCCCEEEEeCCCccchH---H----HHH-----HhCCEEEEEEeCCcc--H--HHHHHHH--hhh----cccCEEEEEC
Confidence            457889999999997531   1    121     589999999665421  1  1111110  001    1578999999


Q ss_pred             ccCC
Q 025189          120 AQLC  123 (256)
Q Consensus       120 ~D~~  123 (256)
                      +|+.
T Consensus       204 ~Dl~  207 (341)
T 2p67_A          204 DDGD  207 (341)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            9984

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.61  E-value=3.1e-08  Score=88.07  Aligned_cols=62  Identities=16%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189           40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      ..+..+.||||||++..   ..    .+.     ..+|++|+|++....   +....+    ...   -.-.+.++|+||
T Consensus       169 ~~~~~~iiiDTpGi~~~---~~----~~~-----~~aD~vl~V~d~~~~---~~~~~l----~~~---~~~~p~ivVlNK  226 (355)
T 3p32_A          169 AAGFDVILIETVGVGQS---EV----AVA-----NMVDTFVLLTLARTG---DQLQGI----KKG---VLELADIVVVNK  226 (355)
T ss_dssp             HTTCCEEEEEECSCSSH---HH----HHH-----TTCSEEEEEEESSTT---CTTTTC----CTT---SGGGCSEEEEEC
T ss_pred             hCCCCEEEEeCCCCCcH---HH----HHH-----HhCCEEEEEECCCCC---ccHHHH----HHh---HhhcCCEEEEEC
Confidence            35788999999998642   11    111     589999999765431   111111    110   012588999999


Q ss_pred             ccCC
Q 025189          120 AQLC  123 (256)
Q Consensus       120 ~D~~  123 (256)
                      +|+.
T Consensus       227 ~Dl~  230 (355)
T 3p32_A          227 ADGE  230 (355)
T ss_dssp             CCGG
T ss_pred             CCCc
Confidence            9984

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.59  E-value=1.9e-08  Score=88.85  Aligned_cols=62  Identities=18%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEec
Q 025189           40 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        40 ~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .+|.++.++||||+.+..   .    .+.     ..+|++++|++...  -+ ....+.+.+.+       .+.++|+||
T Consensus       145 ~~~~~~iliDT~Gi~~~~---~----~v~-----~~~d~vl~v~d~~~--~~-~~~~i~~~i~~-------~~~ivvlNK  202 (337)
T 2qm8_A          145 AAGFDVILVETVGVGQSE---T----AVA-----DLTDFFLVLMLPGA--GD-ELQGIKKGIFE-------LADMIAVNK  202 (337)
T ss_dssp             HTTCCEEEEEECSSSSCH---H----HHH-----TTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEEC
T ss_pred             cCCCCEEEEECCCCCcch---h----hHH-----hhCCEEEEEEcCCC--cc-cHHHHHHHHhc-------cccEEEEEc
Confidence            368899999999997642   1    122     58999999965432  11 10101111111       355888899


Q ss_pred             ccCC
Q 025189          120 AQLC  123 (256)
Q Consensus       120 ~D~~  123 (256)
                      +|+.
T Consensus       203 ~Dl~  206 (337)
T 2qm8_A          203 ADDG  206 (337)
T ss_dssp             CSTT
T ss_pred             hhcc
Confidence            9974

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.57  E-value=1.7e-07  Score=84.87  Aligned_cols=109  Identities=21%  Similarity=0.220  Sum_probs=65.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC----CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF----QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~----~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|++|+|||||+|.|+|......+..    ..++.....++.. ....++++|+||++.....-.++++.+.  +  .+.
T Consensus        75 vG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~--L--~~~  149 (413)
T 1tq4_A           75 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMK--F--YEY  149 (413)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTT--G--GGC
T ss_pred             ECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcC--C--Ccc
Confidence            59999999999999999532111111    1122222222221 1125799999999754333334443322  1  234


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      +.+++   ++..+.......+...+...-     +++++|+|+.|.
T Consensus       150 ~~~~~---lS~G~~~kqrv~la~aL~~~~-----~p~~lV~tkpdl  187 (413)
T 1tq4_A          150 DFFII---ISATRFKKNDIDIAKAISMMK-----KEFYFVRTKVDS  187 (413)
T ss_dssp             SEEEE---EESSCCCHHHHHHHHHHHHTT-----CEEEEEECCHHH
T ss_pred             CCeEE---eCCCCccHHHHHHHHHHHhcC-----CCeEEEEecCcc
Confidence            55554   344356677788888887642     799999999975

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.55  E-value=2.4e-07  Score=85.95  Aligned_cols=111  Identities=18%  Similarity=0.157  Sum_probs=64.6

Q ss_pred             CCCCCCCHHHHHHHHh------CCCcccccCC--CCCc---------c--eeEEEE----------------eeeCCeEE
Q 025189            1 MGKGGVGKSSTVNSVI------GERVVTVNSF--QSEA---------L--RPVMVS----------------RSKGGFTL   45 (256)
Q Consensus         1 vG~tG~GKSSliN~l~------g~~~~~~~~~--~~~t---------~--~~~~~~----------------~~~~g~~v   45 (256)
                      +|.+||||||++|.|.      |.++..++.-  .+..         .  -+....                ....+..+
T Consensus       107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~~~Dv  186 (504)
T 2j37_W          107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEI  186 (504)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHTTCCE
T ss_pred             ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHCCCcE
Confidence            5899999999999999      7766544431  1100         0  011110                01267789


Q ss_pred             EEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCccccc-EEEEEecccCC
Q 025189           46 NIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC  123 (256)
Q Consensus        46 ~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~-~ivv~Tk~D~~  123 (256)
                      .||||||.....   .....++......-.+|.+++|++.... .  .....++.+.+.      .+ ..+|+||+|..
T Consensus       187 vIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g-~--~~~~~a~~~~~~------~~i~gvVlNK~D~~  253 (504)
T 2j37_W          187 IIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIG-Q--ACEAQAKAFKDK------VDVASVIVTKLDGH  253 (504)
T ss_dssp             EEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCC-T--THHHHHHHHHHH------HCCCCEEEECTTSC
T ss_pred             EEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecccc-c--cHHHHHHHHHhh------cCceEEEEeCCccc
Confidence            999999987532   2222333222111278999999665532 2  233444444432      35 48999999975

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.54  E-value=3.7e-07  Score=85.63  Aligned_cols=108  Identities=10%  Similarity=0.161  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc---------------cccCC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV---------------TVNSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~---------------~~~~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~   59 (256)
                      +|..++|||||.-+|+-..-+               .+.++      .+.|-........+++..++||||||.-|..  
T Consensus        37 iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~--  114 (548)
T 3vqt_A           37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFS--  114 (548)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGGCS--
T ss_pred             EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHH--
Confidence            577899999999999732110               01111      1122233345678899999999999998764  


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                       .+....+      .-+|..|+|++... -.......+++...+.-     .|.++++||.|..
T Consensus       115 -~Ev~raL------~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~-----lp~i~fINK~Dr~  165 (548)
T 3vqt_A          115 -EDTYRVL------TAVDSALVVIDAAK-GVEAQTRKLMDVCRMRA-----TPVMTFVNKMDRE  165 (548)
T ss_dssp             -HHHHHHH------HSCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CCEEEEEECTTSC
T ss_pred             -HHHHHHH------HhcCceEEEeecCC-CcccccHHHHHHHHHhC-----CceEEEEecccch
Confidence             2333344      37899999976664 36667777777666553     7899999999973

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.44  E-value=1.1e-06  Score=83.51  Aligned_cols=75  Identities=19%  Similarity=0.277  Sum_probs=39.3

Q ss_pred             EEEEEeCCCCCCC--CcCc----HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEE
Q 025189           44 TLNIIDTPGLVEA--GYVN----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL  117 (256)
Q Consensus        44 ~v~liDTPG~~~~--~~~~----~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~  117 (256)
                      .+.++|.||++..  +..+    ..+.+.++.++. .+..+++++...+..-....   .++.+...-...  .++|+|+
T Consensus       148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~-~~~~iil~vvt~~~d~a~~~---~l~la~~v~~~g--~rtI~Vl  221 (608)
T 3szr_A          148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ-RQETISLVVVPSNVDIATTE---ALSMAQEVDPEG--DRTIGIL  221 (608)
T ss_dssp             CEEEEECCC------CCSSCSHHHHHHHHHHHHTT-SSSCCEEEEEESSSCTTTCH---HHHHHHHHCSSC--CSEEEEE
T ss_pred             ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh-cCCCCceEEEeccchhccHH---HHHHHHHHhhcC--CceEEEe
Confidence            5899999998863  2222    244445554443 23455666655443222223   333333432222  7899999


Q ss_pred             ecccCCC
Q 025189          118 THAQLCP  124 (256)
Q Consensus       118 Tk~D~~~  124 (256)
                      ||+|+.+
T Consensus       222 TK~Dlv~  228 (608)
T 3szr_A          222 TKPDLVD  228 (608)
T ss_dssp             ECGGGSS
T ss_pred             cchhhcC
Confidence            9999863

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.40  E-value=5.5e-08  Score=82.03  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             CCCCCCCHHHHHHHHh-----CCCccccc
Q 025189            1 MGKGGVGKSSTVNSVI-----GERVVTVN   24 (256)
Q Consensus         1 vG~tG~GKSSliN~l~-----g~~~~~~~   24 (256)
                      +|+.||||||++|.|.     |.+++.+.
T Consensus        20 ~GkgGvGKTTl~~~La~~l~~g~~v~vvd   48 (262)
T 1yrb_A           20 VGTAGSGKTTLTGEFGRYLEDNYKVAYVN   48 (262)
T ss_dssp             ECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             eCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence            4899999999999998     77765554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.34  E-value=7.5e-07  Score=81.16  Aligned_cols=72  Identities=13%  Similarity=0.041  Sum_probs=45.3

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.||||||....   +.....+++.......+|.+++|++...   ........+.+.+..     ....+|+||.
T Consensus       181 ~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~~pd~vlLVvDA~~---gq~a~~~a~~f~~~~-----~i~gVIlTKl  249 (443)
T 3dm5_A          181 KGVDIIIVDTAGRHKE---DKALIEEMKQISNVIHPHEVILVIDGTI---GQQAYNQALAFKEAT-----PIGSIIVTKL  249 (443)
T ss_dssp             TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHSC-----TTEEEEEECC
T ss_pred             CCCCEEEEECCCcccc---hHHHHHHHHHHHHhhcCceEEEEEeCCC---chhHHHHHHHHHhhC-----CCeEEEEECC
Confidence            4578899999998643   3444444544433347899999955442   223334444444443     5678999999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       250 D~~  252 (443)
T 3dm5_A          250 DGS  252 (443)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            974

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.23  E-value=4.5e-07  Score=86.56  Aligned_cols=108  Identities=14%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-----c------ccCCC------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV-----T------VNSFQ------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~-----~------~~~~~------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|..++|||||..+|+-..-.     .      +.++.      +.|-........+++..++|+||||.-|..   .+.
T Consensus         8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~---~Ev   84 (638)
T 3j25_A            8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL---AEV   84 (638)
T ss_dssp             ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH---HHH
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH---HHH
Confidence            477899999999999732110     0      11110      123333344567889999999999998753   222


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ...+      .-+|..++|++... -...+....++...+.-     .|.++++||.|..
T Consensus        85 ~raL------~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~  132 (638)
T 3j25_A           85 YRSL------SVLDGAILLISAKD-GVQAQTRILFHALRKMG-----IPTIFFINKIDQN  132 (638)
T ss_dssp             HHHH------TTCSEEECCEESSC-TTCSHHHHHHHHHHHHT-----CSCEECCEECCSS
T ss_pred             HHHH------HHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcC-----CCeEEEEeccccc
Confidence            2233      57899999977665 35556667777666653     6789999999974

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.22  E-value=1.3e-06  Score=79.54  Aligned_cols=73  Identities=15%  Similarity=0.029  Sum_probs=43.1

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.|+||||...   .+......+......-.+|.+++|++....   ......+    +.|.+.....+.+|+||+
T Consensus       179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~g---~~~~~~~----~~~~~~~~~i~gvVlnK~  248 (432)
T 2v3c_C          179 KKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTIG---QQAGIQA----KAFKEAVGEIGSIIVTKL  248 (432)
T ss_dssp             SSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGGG---GGHHHHH----HHHHTTSCSCEEEEEECS
T ss_pred             hCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeecccc---HHHHHHH----HHHhhcccCCeEEEEeCC
Confidence            567889999999864   244455555443333478999999654421   1222222    223222102389999999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       249 D~~  251 (432)
T 2v3c_C          249 DGS  251 (432)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            974

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.19  E-value=9.4e-07  Score=72.37  Aligned_cols=18  Identities=33%  Similarity=0.499  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|||||||+|+|++.
T Consensus        36 ~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           36 MGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EECTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            589999999999999875

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.11  E-value=8.3e-06  Score=78.77  Aligned_cols=108  Identities=14%  Similarity=0.162  Sum_probs=66.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-----c------ccCC------CCCcceeEEEEeee-------CCeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV-----T------VNSF------QSEALRPVMVSRSK-------GGFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~-----~------~~~~------~~~t~~~~~~~~~~-------~g~~v~liDTPG~~~~   56 (256)
                      +|.-++|||||..+|+-..-.     .      +.++      .+.|-.....+..+       ++..++||||||.-|.
T Consensus        19 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF   98 (709)
T 4fn5_A           19 CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF   98 (709)
T ss_dssp             ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc
Confidence            477899999999998743110     0      0110      01122222223333       3578999999999875


Q ss_pred             CcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           57 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        57 ~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .   .+....++      -+|..|+|++... -+......+++...+.-     .|.++++||.|..
T Consensus        99 ~---~Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~  150 (709)
T 4fn5_A           99 T---IEVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANKYG-----VPRIVYVNKMDRQ  150 (709)
T ss_dssp             H---HHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHHT-----CCEEEEEECSSST
T ss_pred             H---HHHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEcccccc
Confidence            3   23333343      5799999966654 36677777777666553     7899999999974

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.09  E-value=5.9e-06  Score=75.13  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=43.8

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.|+||||..... .+.....++......-.+|.+++|++...   ........+.+.+..     ....+|+||.
T Consensus       178 ~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~~---gq~a~~~a~~f~~~~-----~~~gVIlTKl  248 (433)
T 3kl4_A          178 NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDASI---GQKAYDLASRFHQAS-----PIGSVIITKM  248 (433)
T ss_dssp             TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGGHHHHHHHHHHC-----SSEEEEEECG
T ss_pred             cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCcc---chHHHHHHHHHhccc-----CCcEEEEecc
Confidence            36678999999975411 12233334443322236788999954432   223344555555554     5678999999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       249 D~~  251 (433)
T 3kl4_A          249 DGT  251 (433)
T ss_dssp             GGC
T ss_pred             ccc
Confidence            964

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.98  E-value=8.2e-06  Score=74.48  Aligned_cols=95  Identities=16%  Similarity=0.117  Sum_probs=53.0

Q ss_pred             CCCCCCCHHHHHHHHhCC-----------------CcccccCCCCCcceeEEEEeee-----------CCeEEEEEeCCC
Q 025189            1 MGKGGVGKSSTVNSVIGE-----------------RVVTVNSFQSEALRPVMVSRSK-----------GGFTLNIIDTPG   52 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~-----------------~~~~~~~~~~~t~~~~~~~~~~-----------~g~~v~liDTPG   52 (256)
                      +|+.++|||+|+|.|+|.                 ..+.++   +++..+......+           ....+.++||||
T Consensus        73 ~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~---~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG  149 (447)
T 3q5d_A           73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR---GGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQG  149 (447)
T ss_dssp             EESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC---CSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEEC
T ss_pred             ECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC---CCCCCceeEEEEecCccccccCCCCcceEEEEcCCc
Confidence            599999999999999974                 122222   2333333322222           135799999999


Q ss_pred             CCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHh
Q 025189           53 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG  103 (256)
Q Consensus        53 ~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~  103 (256)
                      +.+... +.+.-..|- .+..-=.++++|-  +.. .+++.+.+.++.+.+
T Consensus       150 ~~~~~~-~~~~d~~if-al~~lLSs~~IyN--~~~-~i~~~~l~~L~~~~e  195 (447)
T 3q5d_A          150 TFDSQS-TLRDSATVF-ALSTMISSIQVYN--LSQ-NVQEDDLQHLQLFTE  195 (447)
T ss_dssp             CCSSHH-HHHHHHHHH-HHHHHHCSEEEEE--ESS-SCCHHHHHHHHHHHH
T ss_pred             cccccc-chhhhHHHH-HHHHHHhhHHHHh--hcc-cccHHHHHHHHHHHH
Confidence            987643 222211121 1111113455555  332 577877777766554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.82  E-value=5.9e-05  Score=65.24  Aligned_cols=74  Identities=14%  Similarity=0.095  Sum_probs=41.4

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      ++..+.|+||||..... .++....+++.......+|.+++|++...   .......++.+.+.     .....+|+||+
T Consensus       179 ~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~-----~~i~gvVlnk~  249 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQA-----SKIGTIIITKM  249 (297)
T ss_dssp             TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHT-----CTTEEEEEECG
T ss_pred             CCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCc---hHHHHHHHHHHHhh-----CCCCEEEEeCC
Confidence            56678999999986511 22233333332211136889999965542   12223333333321     13478999999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       250 D~~  252 (297)
T 1j8m_F          250 DGT  252 (297)
T ss_dssp             GGC
T ss_pred             CCC
Confidence            963

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.73  E-value=5.2e-06  Score=72.24  Aligned_cols=53  Identities=28%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAG   57 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~   57 (256)
                      +|++|||||||+|+|.|.....++...       .+|.......  ..+  -.++||||+....
T Consensus       179 vG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~--~~~--g~v~dtpg~~~~~  238 (307)
T 1t9h_A          179 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TSG--GLVADTPGFSSLE  238 (307)
T ss_dssp             EESHHHHHHHHHHHHCC-------------------CCCCCEEE--ETT--EEEESSCSCSSCC
T ss_pred             ECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhh--cCC--EEEecCCCccccc
Confidence            599999999999999997543344322       2332222222  211  3689999997643

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.70  E-value=3.5e-05  Score=67.65  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=41.7

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      +..+.++||+|.......--..+..+.+.+   .+|-.+++.+...   ...-...++.+.+..     ..+.+++||.|
T Consensus       211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLDa~t---~~~~~~~~~~~~~~~-----~it~iilTKlD  279 (328)
T 3e70_C          211 GIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGDALA---GNAIVEQARQFNEAV-----KIDGIILTKLD  279 (328)
T ss_dssp             TCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEEGGG---TTHHHHHHHHHHHHS-----CCCEEEEECGG
T ss_pred             cchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEecHH---HHHHHHHHHHHHHhc-----CCCEEEEeCcC
Confidence            445688999998654333223333444433   5788888855432   123334444454443     45689999999


Q ss_pred             CC
Q 025189          122 LC  123 (256)
Q Consensus       122 ~~  123 (256)
                      ..
T Consensus       280 ~~  281 (328)
T 3e70_C          280 AD  281 (328)
T ss_dssp             GC
T ss_pred             Cc
Confidence            63

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.68  E-value=0.00015  Score=62.94  Aligned_cols=74  Identities=12%  Similarity=0.070  Sum_probs=40.1

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhh---hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEe
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFL---LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT  118 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l---~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~T  118 (256)
                      +..+.++||+|........-.-++.++..+   ....++.++++.+...   .......++.+.+..     ..+++++|
T Consensus       184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t---~~~~~~~~~~~~~~~-----~~t~iivT  255 (304)
T 1rj9_A          184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAV-----GLTGVIVT  255 (304)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHH-----CCSEEEEE
T ss_pred             CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH---HHHHHHHHHHHHHHc-----CCcEEEEE
Confidence            445679999998653211111122222222   1246888888844332   233344455555444     35789999


Q ss_pred             cccCC
Q 025189          119 HAQLC  123 (256)
Q Consensus       119 k~D~~  123 (256)
                      |.|..
T Consensus       256 h~d~~  260 (304)
T 1rj9_A          256 KLDGT  260 (304)
T ss_dssp             CTTSS
T ss_pred             CCccc
Confidence            99864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.65  E-value=4e-05  Score=66.36  Aligned_cols=52  Identities=23%  Similarity=0.339  Sum_probs=31.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~   56 (256)
                      +|++|||||||+|+|. ......+....       +|.......  ..+ --.++||||+...
T Consensus       171 ~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~--~~~-~g~v~d~pg~~~~  229 (302)
T 2yv5_A          171 AGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIP--FGK-GSFVGDTPGFSKV  229 (302)
T ss_dssp             ECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEE--ETT-TEEEESSCCCSSC
T ss_pred             ECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEE--cCC-CcEEEECcCcCcC
Confidence            5999999999999999 64433343321       233222222  211 1268999998743

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.64  E-value=0.00011  Score=67.85  Aligned_cols=72  Identities=13%  Similarity=0.071  Sum_probs=41.5

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHh---hh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGF---LL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL  114 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~---l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i  114 (256)
                      .+..+.++||+|.....   ...+..+++.   ..   ...+|-+|+|++...   .......++.+.+.+     .-+.
T Consensus       374 ~~~DvVLIDTaGrl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt---Gq~al~~ak~f~~~~-----~itg  442 (503)
T 2yhs_A          374 RNIDVLIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAV-----GLTG  442 (503)
T ss_dssp             TTCSEEEECCCCSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG---THHHHHHHHHHHHHT-----CCSE
T ss_pred             cCCCEEEEeCCCccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc---cHHHHHHHHHHHhhc-----CCCE
Confidence            45678999999986432   2233333322   11   234788888844332   233344455555554     3467


Q ss_pred             EEEecccCC
Q 025189          115 LVLTHAQLC  123 (256)
Q Consensus       115 vv~Tk~D~~  123 (256)
                      +|+||.|..
T Consensus       443 vIlTKLD~t  451 (503)
T 2yhs_A          443 ITLTKLDGT  451 (503)
T ss_dssp             EEEECGGGC
T ss_pred             EEEEcCCCc
Confidence            899999964

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.60  E-value=6.8e-05  Score=68.24  Aligned_cols=72  Identities=15%  Similarity=0.072  Sum_probs=40.1

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.||||||....   +......+........+|.+++|++...  - ......++.+....     .-.-+|+||.
T Consensus       182 ~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~~--g-~~~~~~~~~f~~~l-----~i~gvVlnK~  250 (433)
T 2xxa_A          182 KFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAMT--G-QDAANTAKAFNEAL-----PLTGVVLTKV  250 (433)
T ss_dssp             TTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETTB--C-TTHHHHHHHHHHHS-----CCCCEEEECT
T ss_pred             CCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecch--h-HHHHHHHHHHhccC-----CCeEEEEecC
Confidence            4678999999997643   2233333332222247889999866542  2 12222333333221     2345799999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       251 D~~  253 (433)
T 2xxa_A          251 DGD  253 (433)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.55  E-value=4.9e-05  Score=65.77  Aligned_cols=54  Identities=28%  Similarity=0.441  Sum_probs=31.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAG   57 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~~~   57 (256)
                      +|++|+|||||+|.|.|......+....       +|...........|   .++||||+....
T Consensus       175 ~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g---~v~q~p~~~~~~  235 (301)
T 1u0l_A          175 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  235 (301)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             ECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCC---EEEECcCCCccC
Confidence            6999999999999999975433333221       22222211111122   689999987544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.49  E-value=3.7e-05  Score=68.22  Aligned_cols=52  Identities=31%  Similarity=0.526  Sum_probs=30.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccCCCC-------CcceeEEEEeeeCCeEEEEEeCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERV-VTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVE   55 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~-------~t~~~~~~~~~~~g~~v~liDTPG~~~   55 (256)
                      +|++|||||||+|.|+|... ..++....       +|......... ++  ..++||||+.+
T Consensus       221 vG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-q~--~~l~dtpgv~e  280 (358)
T 2rcn_A          221 AGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-HG--GDVIDSPGVRE  280 (358)
T ss_dssp             ECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-TS--CEEEECHHHHT
T ss_pred             ECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-CC--CEecCcccHHH
Confidence            69999999999999999764 44443221       12222222221 22  25799999865

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.28  E-value=0.00018  Score=65.16  Aligned_cols=72  Identities=15%  Similarity=0.032  Sum_probs=40.4

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.||||||....   +.....++......-.+|.+++|++..  .- ..-...++.+.+..     ...-+|+||.
T Consensus       179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tg-q~av~~a~~f~~~l-----~i~GVIlTKl  247 (425)
T 2ffh_A          179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG-QEALSVARAFDEKV-----GVTGLVLTKL  247 (425)
T ss_dssp             TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT-THHHHHHHHHHHHT-----CCCEEEEESG
T ss_pred             CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--ch-HHHHHHHHHHHhcC-----CceEEEEeCc
Confidence            4667899999997643   333333333222112688888986554  22 22222333333322     3467899999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       248 D~~  250 (425)
T 2ffh_A          248 DGD  250 (425)
T ss_dssp             GGC
T ss_pred             CCc
Confidence            863

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.27  E-value=0.00033  Score=60.47  Aligned_cols=72  Identities=13%  Similarity=0.069  Sum_probs=40.4

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.|+||||....   +...+..+...+....+|.+++|++...   ..   ..+..+.+.|..  ....-+|+||.
T Consensus       181 ~~~dlvIiDT~G~~~~---~~~~~~el~~~l~~~~~~~~~lVl~at~---~~---~~~~~~~~~~~~--l~~~giVltk~  249 (296)
T 2px0_A          181 SEYDHVFVDTAGRNFK---DPQYIDELKETIPFESSIQSFLVLSATA---KY---EDMKHIVKRFSS--VPVNQYIFTKI  249 (296)
T ss_dssp             GGSSEEEEECCCCCTT---SHHHHHHHHHHSCCCTTEEEEEEEETTB---CH---HHHHHHTTTTSS--SCCCEEEEECT
T ss_pred             cCCCEEEEeCCCCChh---hHHHHHHHHHHHhhcCCCeEEEEEECCC---CH---HHHHHHHHHHhc--CCCCEEEEeCC
Confidence            4567899999998643   3333444444432234677788854432   11   223333444431  24566788999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       250 D~~  252 (296)
T 2px0_A          250 DET  252 (296)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.23  E-value=0.00027  Score=62.77  Aligned_cols=78  Identities=10%  Similarity=0.117  Sum_probs=45.9

Q ss_pred             EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCC-----------CCCHHHHHHHHHHH
Q 025189           34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY-----------RVDDLDRQIIKAVT  102 (256)
Q Consensus        34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~-----------r~~~~~~~~~~~l~  102 (256)
                      ......+++..+.+|||+|......       ....|.  .+++++|||+++++.           ++ .+-..+++.+.
T Consensus       192 ~~~~~~~~~~~l~i~Dt~Gq~~~r~-------~w~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~-~es~~~~~~i~  261 (362)
T 1zcb_A          192 HEYDFEIKNVPFKMVDVGGQRSERK-------RWFECF--DSVTSILFLVSSSEFDQVLMEDRQTNRL-TESLNIFETIV  261 (362)
T ss_dssp             EEEEEEETTEEEEEEEECC--------------CTTSC--TTCCEEEEEEETTCTTCEETTEEEEEHH-HHHHHHHHHHH
T ss_pred             EEEEeeeCCeEEEEEeccchhhhhh-------hHHHHh--CCCCEEEEEEECccccccccccccccHH-HHHHHHHHHHh
Confidence            3345567889999999999854321       112222  589999999998862           12 12223444443


Q ss_pred             hh-cCCcccccEEEEEecccCC
Q 025189          103 GT-FGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus       103 ~~-~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .. ...  ..++++++||+|+.
T Consensus       262 ~~~~~~--~~piILv~NK~DL~  281 (362)
T 1zcb_A          262 NNRVFS--NVSIILFLNKTDLL  281 (362)
T ss_dssp             TCGGGT--TSEEEEEEECHHHH
T ss_pred             cchhhC--CCCEEEEEEChhhh
Confidence            32 111  26899999999974

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.23  E-value=0.00037  Score=62.68  Aligned_cols=78  Identities=9%  Similarity=0.116  Sum_probs=48.9

Q ss_pred             EEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCC----------CCCHHHHHHHHHHHhh
Q 025189           35 MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY----------RVDDLDRQIIKAVTGT  104 (256)
Q Consensus        35 ~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~----------r~~~~~~~~~~~l~~~  104 (256)
                      .....+++..+.+|||+|........       ..|.  .++++++||+++++.          .--.+-..+++.+...
T Consensus       209 ~~~~~~~~v~l~iwDtaGQe~~r~~w-------~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          209 ETKFQVDKVNFHMFDVGGQRDERRKW-------IQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             EEEEEETTEEEEEEEECCSGGGGGGG-------GGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             EEEeecCCccceecccchhhhhhhhh-------Hhhc--cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            34556788999999999986433221       1222  689999999998861          1111223344444332


Q ss_pred             -cCCcccccEEEEEecccCC
Q 025189          105 -FGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus       105 -~g~~~~~~~ivv~Tk~D~~  123 (256)
                       ...  ..++++|+||+|+.
T Consensus       280 ~~~~--~~piiLvgNK~DL~  297 (402)
T 1azs_C          280 RWLR--TISVILFLNKQDLL  297 (402)
T ss_dssp             TTCS--SCCEEEEEECHHHH
T ss_pred             ccCC--CCeEEEEEEChhhh
Confidence             112  26899999999973

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.21  E-value=0.00034  Score=57.03  Aligned_cols=18  Identities=33%  Similarity=0.564  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|||||||+|.|++.
T Consensus        44 vG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           44 MGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            589999999999999865

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.20  E-value=0.0002  Score=63.34  Aligned_cols=81  Identities=11%  Similarity=0.134  Sum_probs=49.4

Q ss_pred             EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC-------CHHHHHHHHHHHhhcC
Q 025189           34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-------DDLDRQIIKAVTGTFG  106 (256)
Q Consensus        34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~-------~~~~~~~~~~l~~~~g  106 (256)
                      ......+++..+.+|||+|........       ..|.  .++|+||||+++++...       ...-......+.++..
T Consensus       184 ~~~~~~~~~~~l~iwDt~GQe~~r~~w-------~~yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~  254 (353)
T 1cip_A          184 VETHFTFKDLHFKMFDVGGQRSERKKW-------IHCF--EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN  254 (353)
T ss_dssp             EEEEEEETTEEEEEEEECCSGGGGGGG-------GGGC--TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             EEEEEeeCCeeEEEEeCCCchhhhHHH-------HHHH--hcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence            344556778999999999976432211       1222  68999999998886210       1112233333333332


Q ss_pred             Cc--ccccEEEEEecccCC
Q 025189          107 KQ--IWRKSLLVLTHAQLC  123 (256)
Q Consensus       107 ~~--~~~~~ivv~Tk~D~~  123 (256)
                      ..  ...|+++|+||+|+.
T Consensus       255 ~~~~~~~piiLv~NK~DL~  273 (353)
T 1cip_A          255 NKWFTDTSIILFLNKKDLF  273 (353)
T ss_dssp             CGGGTTSEEEEEEECHHHH
T ss_pred             CccccCCcEEEEEECcCch
Confidence            11  126899999999974

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.18  E-value=0.00017  Score=62.67  Aligned_cols=72  Identities=14%  Similarity=0.066  Sum_probs=39.2

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHH---HHhhh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELI---KGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL  114 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i---~~~l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i  114 (256)
                      .+..+.++||||...   .....++.+   .+.+.   ...+|.+++|++...   ........+.+.+..     .-.-
T Consensus       185 ~~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t---~~~~l~~a~~~~~~~-----~i~g  253 (306)
T 1vma_A          185 RNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---GQNGLVQAKIFKEAV-----NVTG  253 (306)
T ss_dssp             TTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---HHHHHHHHHHHHHHS-----CCCE
T ss_pred             cCCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHHHHHHHhcC-----CCCE
Confidence            355689999999632   233333333   33221   235888999954431   122222233333322     4567


Q ss_pred             EEEecccCC
Q 025189          115 LVLTHAQLC  123 (256)
Q Consensus       115 vv~Tk~D~~  123 (256)
                      +|+||.|..
T Consensus       254 vVlTk~D~~  262 (306)
T 1vma_A          254 IILTKLDGT  262 (306)
T ss_dssp             EEEECGGGC
T ss_pred             EEEeCCCCc
Confidence            889999974

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=97.03  E-value=0.0014  Score=57.71  Aligned_cols=78  Identities=17%  Similarity=0.225  Sum_probs=49.2

Q ss_pred             EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCC-----------CCCCHHHHHHHHHHH
Q 025189           34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDA-----------YRVDDLDRQIIKAVT  102 (256)
Q Consensus        34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~-----------~r~~~~~~~~~~~l~  102 (256)
                      ......+++..+.+|||+|..       .+......|.  .+++++|||+++++           .++ .+...+++.+.
T Consensus       152 ~~~~~~~~~v~l~iwDtaGQe-------~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~-~es~~~~~~i~  221 (340)
T 4fid_A          152 HEYDFVVKDIPFHLIDVGGQR-------SERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRL-TESIAVFKDIM  221 (340)
T ss_dssp             EEEEEESSSCEEEEEECCSCH-------HHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHH-HHHHHHHHHHH
T ss_pred             EEEEEEeeeeeeccccCCCcc-------cccccHHHHh--ccCCEEEEEEECCccccccccccccchH-HHHHHHHHHHh
Confidence            445566788999999999973       2333344444  68999999998862           112 12223333333


Q ss_pred             hh-cCCcccccEEEEEecccCC
Q 025189          103 GT-FGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus       103 ~~-~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .. ...  ..++++++||+|+.
T Consensus       222 ~~~~~~--~~piiLv~NK~DL~  241 (340)
T 4fid_A          222 TNEFLK--GAVKLIFLNKMDLF  241 (340)
T ss_dssp             HCGGGT--TSEEEEEEECHHHH
T ss_pred             hhhccC--CCeEEEEEECchhh
Confidence            22 112  26899999999974

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=97.00  E-value=0.00072  Score=59.15  Aligned_cols=81  Identities=7%  Similarity=0.048  Sum_probs=49.1

Q ss_pred             EEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCC-------CCCCCHHHHHHHHHHHhhcC
Q 025189           34 VMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLD-------AYRVDDLDRQIIKAVTGTFG  106 (256)
Q Consensus        34 ~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d-------~~r~~~~~~~~~~~l~~~~g  106 (256)
                      ......+++..+.+|||.|....       ......|.  .+++++++|++++       +..-...-....+.+.++..
T Consensus       158 ~~~~~~~~~v~l~iwDtgGQe~~-------R~~w~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~  228 (327)
T 3ohm_A          158 IEYPFDLQSVIFRMVDVGGQRSE-------RRKWIHCF--ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT  228 (327)
T ss_dssp             EEEEEEETTEEEEEEEECCSHHH-------HTTGGGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred             EEEEEEeeceeeEEEEcCCchhH-------HHHHHHHh--CCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence            44556678899999999997422       21222333  6899999998774       11111222233344444433


Q ss_pred             Cc--ccccEEEEEecccCC
Q 025189          107 KQ--IWRKSLLVLTHAQLC  123 (256)
Q Consensus       107 ~~--~~~~~ivv~Tk~D~~  123 (256)
                      ..  ...++++++||+|+.
T Consensus       229 ~~~~~~~~iiL~~NK~DL~  247 (327)
T 3ohm_A          229 YPWFQNSSVILFLNKKDLL  247 (327)
T ss_dssp             SGGGTTCEEEEEEECHHHH
T ss_pred             hhccCCceEEEEEECchhh
Confidence            21  126899999999974

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.98  E-value=0.0012  Score=57.52  Aligned_cols=72  Identities=15%  Similarity=0.182  Sum_probs=39.8

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHH---HHhhh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELI---KGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL  114 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i---~~~l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i  114 (256)
                      .+..+.||||||....   +...+..+   ...+.   ...+|.+++|++...   .   ...++.+.. |.+. ....-
T Consensus       190 ~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~---~---~~~l~~~~~-~~~~-~~i~G  258 (320)
T 1zu4_A          190 QNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT---G---QNGVIQAEE-FSKV-ADVSG  258 (320)
T ss_dssp             TTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG---T---HHHHHHHHH-HTTT-SCCCE
T ss_pred             cCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---c---HHHHHHHHH-Hhhc-CCCcE
Confidence            4567899999998642   22222222   22221   235899999955442   1   233444433 3332 23456


Q ss_pred             EEEecccCC
Q 025189          115 LVLTHAQLC  123 (256)
Q Consensus       115 vv~Tk~D~~  123 (256)
                      +|+||.|..
T Consensus       259 vVltk~d~~  267 (320)
T 1zu4_A          259 IILTKMDST  267 (320)
T ss_dssp             EEEECGGGC
T ss_pred             EEEeCCCCC
Confidence            899999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.89  E-value=0.00073  Score=58.19  Aligned_cols=72  Identities=15%  Similarity=0.051  Sum_probs=39.7

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.|+||||....   +...+..+......-.+|.+++|++...   .......++.+.+..     ...-+|+||.
T Consensus       179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~~---~~~~~~~~~~~~~~~-----~i~givlnk~  247 (295)
T 1ls1_A          179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAMT---GQEALSVARAFDEKV-----GVTGLVLTKL  247 (295)
T ss_dssp             HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGG---THHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred             CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCCC---cHHHHHHHHHHhhcC-----CCCEEEEECC
Confidence            4567899999987543   3333333333222125788888866542   122222233333222     3466899999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       248 d~~  250 (295)
T 1ls1_A          248 DGD  250 (295)
T ss_dssp             GGC
T ss_pred             CCC
Confidence            863

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.86  E-value=0.0031  Score=50.37  Aligned_cols=68  Identities=10%  Similarity=0.080  Sum_probs=42.3

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEeccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ  121 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D  121 (256)
                      ...+.|+|||+...     ......+      ..+|.+++++..+..  +..-..+++.+.+....+...++.+|+|+++
T Consensus        75 ~yD~viiD~~~~~~-----~~~~~~l------~~ad~viiv~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~  141 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS-----VITSAAV------MVSDLVIIPVTPSPL--DFSAAGSVVTVLEAQAYSRKVEARFLITRKI  141 (206)
T ss_dssp             TSSEEEEECCSSSS-----HHHHHHH------HHCSEEEEEECSCTT--THHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred             CCCEEEEECCCCCC-----HHHHHHH------HHCCEEEEEecCCHH--HHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            45789999998652     2222233      257999999776642  2445566666665532121245689999998


Q ss_pred             C
Q 025189          122 L  122 (256)
Q Consensus       122 ~  122 (256)
                      .
T Consensus       142 ~  142 (206)
T 4dzz_A          142 E  142 (206)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.86  E-value=3.7e-05  Score=62.57  Aligned_cols=51  Identities=22%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeEEEEeeeCCeEEEEEeCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL   53 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~   53 (256)
                      +|+||||||||+|.|++... ......+.+|+.+..  ++.+|..+.++|...+
T Consensus        25 ~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~--gE~~G~~y~fvs~~~f   76 (197)
T 3ney_A           25 IGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRK--SEEDGKEYHFISTEEM   76 (197)
T ss_dssp             ECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCT--TCCTTSSCEECCHHHH
T ss_pred             ECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcC--CeeccccceeccHHHh
Confidence            59999999999999997532 122223334444332  3456665555555544

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.84  E-value=0.0041  Score=55.05  Aligned_cols=18  Identities=22%  Similarity=0.497  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|||||||++.|.|.
T Consensus       163 vG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          163 VGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EcCCCChHHHHHHHHHhh
Confidence            699999999999999873

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.78  E-value=0.0012  Score=58.50  Aligned_cols=71  Identities=8%  Similarity=0.074  Sum_probs=41.9

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCC----------CCCCCHHHHHHHHHHHhhc-CCccc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLD----------AYRVDDLDRQIIKAVTGTF-GKQIW  110 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d----------~~r~~~~~~~~~~~l~~~~-g~~~~  110 (256)
                      ...+.+|||+|.........       .|.  .++|++++|++++          +..--.+...+++.+.... ..  .
T Consensus       182 ~v~l~iwDtaGQe~~r~~~~-------~y~--~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~--~  250 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERRKWI-------HLF--EGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE--K  250 (354)
T ss_dssp             --EEEEEEECCSTTGGGGTG-------GGC--TTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS--S
T ss_pred             ceeeEEEECCCchhhhHHHH-------HHh--CCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC--C
Confidence            46889999999865432221       122  6899999999886          1111112223444443321 12  2


Q ss_pred             ccEEEEEecccCC
Q 025189          111 RKSLLVLTHAQLC  123 (256)
Q Consensus       111 ~~~ivv~Tk~D~~  123 (256)
                      .++++|+||+|+.
T Consensus       251 ~piiLvgNK~DL~  263 (354)
T 2xtz_A          251 TSFMLFLNKFDIF  263 (354)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CeEEEEEECcchh
Confidence            6899999999974

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.77  E-value=0.0043  Score=56.51  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             CCCCCCCHHHHHHHHh-------C----------CCcccccC-CCCCcceeEEEE----e---eeCCeEEEEEeCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVI-------G----------ERVVTVNS-FQSEALRPVMVS----R---SKGGFTLNIIDTPGLVE   55 (256)
Q Consensus         1 vG~tG~GKSSliN~l~-------g----------~~~~~~~~-~~~~t~~~~~~~----~---~~~g~~v~liDTPG~~~   55 (256)
                      +|..++|||+|+|.|+       |          ...|.++. ..++|...-...    .   ...+..+.++||.|+++
T Consensus        73 ~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d  152 (457)
T 4ido_A           73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFD  152 (457)
T ss_dssp             EEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTC
T ss_pred             ECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCC
Confidence            5899999999999775       2          13344433 345555443321    1   11235689999999998


Q ss_pred             CCcCcH--HHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHh
Q 025189           56 AGYVNY--QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG  103 (256)
Q Consensus        56 ~~~~~~--~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~  103 (256)
                      ......  ..+-.+.-.+    .++++|=  ... .+++.+.+-++.+.+
T Consensus       153 ~~~~~~~d~~ifaLa~LL----SS~~IyN--~~~-~i~~~~L~~L~~~te  195 (457)
T 4ido_A          153 SQSTLRDSATVFALSTMI----SSIQVYN--LSQ-NVQEDDLQHLQLFTE  195 (457)
T ss_dssp             TTCCHHHHHHHHHHHHHH----CSEEEEE--EES-SCCHHHHHHHHHHHH
T ss_pred             cccCccccHHHHHHHHHH----hhheeec--ccc-cCCHHHHHHHHHHHH
Confidence            765421  1111111112    3455554  222 466766666655443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.67  E-value=0.0025  Score=55.10  Aligned_cols=18  Identities=22%  Similarity=0.497  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||+++.|.|.
T Consensus       106 vG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          106 VGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            699999999999999873

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.14  E-value=0.0014  Score=51.80  Aligned_cols=18  Identities=33%  Similarity=0.656  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+||||||||++.|.+.
T Consensus        11 ~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A           11 LGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999875

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.12  E-value=0.0014  Score=52.72  Aligned_cols=18  Identities=33%  Similarity=0.593  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus        10 vGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A           10 SGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.05  E-value=0.0016  Score=52.65  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|||||||++.|.|-
T Consensus        26 ~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           26 SGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999985

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.94  E-value=0.0025  Score=52.94  Aligned_cols=19  Identities=37%  Similarity=0.466  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        37 iG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           37 MGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999964

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.79  E-value=0.0024  Score=52.22  Aligned_cols=18  Identities=33%  Similarity=0.713  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus        29 vGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           29 CGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999984

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.79  E-value=0.0025  Score=52.45  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|||||||++.|+|..
T Consensus        22 ~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           22 SAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             ECCTTSCHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            5999999999999999854

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.77  E-value=0.0027  Score=52.30  Aligned_cols=19  Identities=26%  Similarity=0.270  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        36 iG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           36 IGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EECTTSCHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.74  E-value=0.0027  Score=50.42  Aligned_cols=18  Identities=33%  Similarity=0.689  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus         6 ~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            6 TGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999985

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.67  E-value=0.0037  Score=52.94  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        43 iG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           43 IGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ECCTTSCHHHHHHHHTSSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999963

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.67  E-value=0.0038  Score=51.92  Aligned_cols=19  Identities=37%  Similarity=0.644  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           37 VGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.67  E-value=0.003  Score=50.50  Aligned_cols=18  Identities=28%  Similarity=0.490  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||+++.|.|.
T Consensus        13 ~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A           13 SAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHhh
Confidence            599999999999999885

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.66  E-value=0.0038  Score=52.71  Aligned_cols=19  Identities=26%  Similarity=0.377  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        38 iG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           38 IGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999964

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.66  E-value=0.0038  Score=53.18  Aligned_cols=19  Identities=37%  Similarity=0.555  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        40 iGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           40 LGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            6999999999999999964

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.65  E-value=0.0039  Score=51.98  Aligned_cols=19  Identities=32%  Similarity=0.492  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        30 iG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           30 LGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.65  E-value=0.0038  Score=52.50  Aligned_cols=19  Identities=37%  Similarity=0.625  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        39 iG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           39 IGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.63  E-value=0.02  Score=43.87  Aligned_cols=18  Identities=28%  Similarity=0.547  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||+|++++.+.
T Consensus        42 ~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           42 WGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             ESSSTTTTCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999985

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.62  E-value=0.0011  Score=53.22  Aligned_cols=18  Identities=33%  Similarity=0.619  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+||||||||++.|+.+
T Consensus         7 ~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            7 SGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.60  E-value=0.0043  Score=50.85  Aligned_cols=19  Identities=21%  Similarity=0.452  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        41 iG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           41 HGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.59  E-value=0.0043  Score=51.73  Aligned_cols=19  Identities=26%  Similarity=0.233  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           34 AGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999963

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.57  E-value=0.0043  Score=51.93  Aligned_cols=19  Identities=26%  Similarity=0.392  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           41 VGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999963

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.56  E-value=0.019  Score=49.28  Aligned_cols=64  Identities=8%  Similarity=0.114  Sum_probs=40.0

Q ss_pred             EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCH-HHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~-~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      .+.+|||  ..........+       +  .++|++++|+++++...+. .-..++..+...     ..++++|+||+|+
T Consensus        64 ~~~iwD~--qer~~~l~~~~-------~--~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~-----~~piilv~NK~DL  127 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKPH-------V--ANVDQVILVVTVKMPETSTYIIDKFLVLAEKN-----ELETVMVINKMDL  127 (301)
T ss_dssp             SEEEEEE--CCCSCEETTTT-------E--ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT-----TCEEEEEECCGGG
T ss_pred             eEEEEEE--ccccceeeccc-------c--ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-----CCCEEEEEeHHHc
Confidence            7899999  33222222211       1  5899999998887633232 223455544431     2789999999998


Q ss_pred             C
Q 025189          123 C  123 (256)
Q Consensus       123 ~  123 (256)
                      .
T Consensus       128 ~  128 (301)
T 1u0l_A          128 Y  128 (301)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.55  E-value=0.0045  Score=48.51  Aligned_cols=18  Identities=28%  Similarity=0.462  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.+++.
T Consensus        15 ~G~nGsGKSTl~~~~~~~   32 (171)
T 4gp7_A           15 IGSSGSGKSTFAKKHFKP   32 (171)
T ss_dssp             ECCTTSCHHHHHHHHSCG
T ss_pred             ECCCCCCHHHHHHHHccC
Confidence            699999999999987653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.54  E-value=0.0045  Score=51.11  Aligned_cols=19  Identities=37%  Similarity=0.625  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           40 AGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.51  E-value=0.0046  Score=51.76  Aligned_cols=18  Identities=39%  Similarity=0.660  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|-
T Consensus        35 ~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           35 MGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ECSTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999995

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.49  E-value=0.0048  Score=52.18  Aligned_cols=19  Identities=26%  Similarity=0.356  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        56 iG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           56 IGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCCcHHHHHHHHHcCC
Confidence            5999999999999999964

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.47  E-value=0.0048  Score=51.32  Aligned_cols=19  Identities=32%  Similarity=0.684  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           38 IGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.47  E-value=0.0049  Score=51.66  Aligned_cols=20  Identities=30%  Similarity=0.541  Sum_probs=17.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|++|+|||||++.|.|-..
T Consensus        32 iG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           32 VGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCCcHHHHHHHHhCCCC
Confidence            59999999999999999643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.47  E-value=0.0049  Score=51.88  Aligned_cols=19  Identities=26%  Similarity=0.461  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        47 ~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           47 IGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.42  E-value=0.0052  Score=52.00  Aligned_cols=18  Identities=39%  Similarity=0.680  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|-
T Consensus        52 ~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECCTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999996

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.40  E-value=0.0053  Score=51.78  Aligned_cols=19  Identities=26%  Similarity=0.342  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        52 ~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           52 VGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            5999999999999999963

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.37  E-value=0.0054  Score=52.03  Aligned_cols=19  Identities=26%  Similarity=0.361  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        51 ~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.36  E-value=0.0043  Score=52.35  Aligned_cols=18  Identities=44%  Similarity=0.628  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus        31 ~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           31 TGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             ECSTTCSHHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHHh
Confidence            599999999999999984

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.34  E-value=0.0057  Score=52.14  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        53 iG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999964

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.33  E-value=0.0057  Score=51.35  Aligned_cols=19  Identities=32%  Similarity=0.721  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           37 LGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ECCSSSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.33  E-value=0.0053  Score=48.48  Aligned_cols=18  Identities=28%  Similarity=0.435  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+||||+++.|.+.
T Consensus        15 ~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           15 SGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EECTTSCHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            599999999999999986

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.32  E-value=0.0058  Score=51.68  Aligned_cols=19  Identities=37%  Similarity=0.494  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        39 iG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999964

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.28  E-value=0.0055  Score=49.57  Aligned_cols=19  Identities=32%  Similarity=0.559  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++||||||+++.|.+..
T Consensus        14 ~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           14 SGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             ECCTTSCHHHHHHHHHHST
T ss_pred             ECcCCCCHHHHHHHHHhhC
Confidence            5999999999999998764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.12  E-value=0.0047  Score=49.88  Aligned_cols=18  Identities=33%  Similarity=0.477  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus        28 ~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           28 SGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             ECCTTSCTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999885

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.06  E-value=0.0079  Score=50.83  Aligned_cols=19  Identities=26%  Similarity=0.569  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        36 ~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           36 LGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.03  E-value=0.0064  Score=47.32  Aligned_cols=19  Identities=21%  Similarity=0.345  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|+.|+|||||++.|.|.-
T Consensus        39 ~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           39 NGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            5999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.98  E-value=0.0053  Score=53.11  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|+|-
T Consensus        86 vG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           86 VGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             ESSSCHHHHHHHHHHTTS
T ss_pred             ECCCCchHHHHHHHHHcC
Confidence            699999999999999995

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.97  E-value=0.0046  Score=50.41  Aligned_cols=18  Identities=22%  Similarity=0.333  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|-
T Consensus        28 iG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           28 LGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             ECCTTSSTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999986

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.97  E-value=0.0085  Score=53.12  Aligned_cols=19  Identities=32%  Similarity=0.445  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        60 iGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           60 IGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCchHHHHHHHHhcCC
Confidence            6999999999999999964

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.91  E-value=0.0088  Score=52.81  Aligned_cols=19  Identities=26%  Similarity=0.588  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        47 lGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           47 LGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999964

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.89  E-value=0.0091  Score=53.22  Aligned_cols=19  Identities=32%  Similarity=0.597  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|||||||++.|.|-.
T Consensus        35 lGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           35 VGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCchHHHHHHHHHcCC
Confidence            6999999999999999964

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.83  E-value=0.0079  Score=53.18  Aligned_cols=19  Identities=26%  Similarity=0.588  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|||||||++.|.|-.
T Consensus        36 lGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           36 IGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EESTTSSHHHHHHHHHTSS
T ss_pred             ECCCCchHHHHHHHHhcCC
Confidence            5999999999999999964

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.82  E-value=0.0098  Score=52.65  Aligned_cols=19  Identities=32%  Similarity=0.585  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        35 lGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           35 LGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCchHHHHHHHHhcCC
Confidence            5999999999999999964

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.80  E-value=0.0098  Score=52.59  Aligned_cols=19  Identities=32%  Similarity=0.555  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        35 lGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           35 LGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             EcCCCchHHHHHHHHHCCC
Confidence            5999999999999999963

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.75  E-value=0.0086  Score=51.36  Aligned_cols=19  Identities=37%  Similarity=0.625  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        70 ~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           70 AGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EESTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            5999999999999999964

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.75  E-value=0.0079  Score=53.13  Aligned_cols=18  Identities=33%  Similarity=0.562  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||+++|+|.
T Consensus       129 ~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          129 TGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            599999999999999885

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.75  E-value=0.01  Score=52.73  Aligned_cols=19  Identities=32%  Similarity=0.672  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        35 lGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           35 LGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             ECCCCcHHHHHHHHHHcCC
Confidence            5999999999999999964

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.73  E-value=0.008  Score=51.96  Aligned_cols=18  Identities=39%  Similarity=0.429  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|-
T Consensus       132 vGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          132 IGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhhh
Confidence            699999999999999863

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.71  E-value=0.007  Score=48.66  Aligned_cols=18  Identities=17%  Similarity=0.307  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+||||+++.|.|.
T Consensus        12 ~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A           12 AGGTASGKTTLAQALART   29 (211)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999884

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.70  E-value=0.0087  Score=52.89  Aligned_cols=19  Identities=26%  Similarity=0.546  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|+||+|||||+|+|+|.-
T Consensus       181 vG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          181 AGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             EESSSSCHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            5999999999999999963

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.70  E-value=0.011  Score=52.56  Aligned_cols=19  Identities=32%  Similarity=0.672  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        43 lGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           43 LGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            5999999999999999963

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.64  E-value=0.0091  Score=47.60  Aligned_cols=19  Identities=26%  Similarity=0.534  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++||||||+++.|.+.-
T Consensus        12 ~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A           12 SGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ECSTTSCHHHHHHHHHHCT
T ss_pred             ECCCCCCHHHHHHHHHHhh
Confidence            5999999999999998753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.63  E-value=0.007  Score=49.61  Aligned_cols=18  Identities=22%  Similarity=0.508  Sum_probs=11.3

Q ss_pred             CCCCCCCHHHHHHHHh-CC
Q 025189            1 MGKGGVGKSSTVNSVI-GE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~-g~   18 (256)
                      +|++||||||+++.|. |.
T Consensus        33 ~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           33 SSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             ECSCC----CHHHHHHC--
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            5999999999999999 75

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.59  E-value=0.059  Score=47.55  Aligned_cols=16  Identities=38%  Similarity=0.572  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+||||++++|.
T Consensus        29 ~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           29 EGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999987

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.58  E-value=0.0096  Score=47.00  Aligned_cols=17  Identities=41%  Similarity=0.667  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++|+||||+++.|.+
T Consensus         8 ~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            8 TGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            59999999999999975

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.57  E-value=0.041  Score=44.42  Aligned_cols=65  Identities=18%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             CeEEEEEeCCCC-CCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           42 GFTLNIIDTPGL-VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        42 g~~v~liDTPG~-~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      ...+.|+|||+. ...     .....+      ..+|.+++++..+...+ ..-..+++.+.+..  +  .+..+|+|++
T Consensus        67 ~yD~viiD~p~~~~~~-----~~~~~l------~~aD~viiv~~~~~~~~-~~~~~~~~~l~~~~--~--~~~~vv~N~~  130 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE-----DLEALA------DGCDLLVIPSTPDALAL-DALMLTIETLQKLG--N--NRFRILLTII  130 (209)
T ss_dssp             GCSEEEEEEECCCSSS-----HHHHHH------HTSSEEEEEECSSHHHH-HHHHHHHHHHHHTC--S--SSEEEEECSB
T ss_pred             cCCEEEEeCCCCcCcH-----HHHHHH------HHCCEEEEEecCCchhH-HHHHHHHHHHHhcc--C--CCEEEEEEec
Confidence            456899999986 432     122222      36899999966553111 12234445555432  1  4578999999


Q ss_pred             cC
Q 025189          121 QL  122 (256)
Q Consensus       121 D~  122 (256)
                      +.
T Consensus       131 ~~  132 (209)
T 3cwq_A          131 PP  132 (209)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.54  E-value=0.009  Score=52.16  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||+|+|.|.-
T Consensus       177 ~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          177 CGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             EESTTSCHHHHHHHGGGGS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999863

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.48  E-value=0.01  Score=47.51  Aligned_cols=18  Identities=28%  Similarity=0.470  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus         7 ~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            7 TGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHhh
Confidence            599999999999999985

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.43  E-value=0.0092  Score=52.55  Aligned_cols=19  Identities=26%  Similarity=0.485  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        32 lGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           32 LGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             ECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCccHHHHHHHHHcCC
Confidence            5999999999999999964

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.39  E-value=0.014  Score=46.80  Aligned_cols=18  Identities=39%  Similarity=0.743  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+||||||+++.|...
T Consensus        18 ~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           18 CGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.28  E-value=0.013  Score=52.48  Aligned_cols=19  Identities=26%  Similarity=0.518  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        53 lGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           53 LGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EESTTSSHHHHHHHHHTCS
T ss_pred             ECCCCChHHHHHHHHhCCC
Confidence            5999999999999999954

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.28  E-value=0.013  Score=46.42  Aligned_cols=18  Identities=22%  Similarity=0.403  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+++.|++.
T Consensus        12 ~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A           12 AAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHh
Confidence            499999999999999975

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.27  E-value=0.013  Score=45.43  Aligned_cols=18  Identities=28%  Similarity=0.420  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+||||||+.+.|.+.
T Consensus        10 ~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A           10 VGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=94.23  E-value=0.012  Score=53.07  Aligned_cols=18  Identities=39%  Similarity=0.547  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||+++|+|.
T Consensus       173 ~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          173 TGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999985

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.19  E-value=0.011  Score=47.89  Aligned_cols=18  Identities=22%  Similarity=0.344  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus        31 ~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           31 FGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999884

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.17  E-value=0.013  Score=52.07  Aligned_cols=18  Identities=44%  Similarity=0.628  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||+++|+|.
T Consensus       142 vG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          142 TGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999984

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.15  E-value=0.014  Score=46.72  Aligned_cols=18  Identities=39%  Similarity=0.656  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+++.|.+.
T Consensus        35 ~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           35 MGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.14  E-value=0.016  Score=45.29  Aligned_cols=18  Identities=28%  Similarity=0.505  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++++.+.
T Consensus        44 ~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           44 VGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.13  E-value=0.014  Score=50.63  Aligned_cols=18  Identities=33%  Similarity=0.364  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|||||||++.|.|.
T Consensus        96 ~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           96 AGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCchHHHHHHHHHhh
Confidence            599999999999999884

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.11  E-value=0.009  Score=52.71  Aligned_cols=19  Identities=26%  Similarity=0.569  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        37 lGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           37 LGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             ECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999964

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.11  E-value=0.013  Score=54.23  Aligned_cols=18  Identities=28%  Similarity=0.519  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+||||||||+|+|+|.
T Consensus       266 ~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          266 VGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             EESTTSSHHHHHHHHGGG
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999985

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.10  E-value=0.0056  Score=48.30  Aligned_cols=18  Identities=17%  Similarity=0.418  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.+.
T Consensus         8 vG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            8 VGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EESCHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            589999999999999985

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.07  E-value=0.019  Score=47.47  Aligned_cols=19  Identities=26%  Similarity=0.573  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHh---CCC
Q 025189            1 MGKGGVGKSSTVNSVI---GER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~---g~~   19 (256)
                      +|++||||||+++.|.   |-.
T Consensus        33 ~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           33 LGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCC
T ss_pred             ECCCCCCHHHHHHHHHHHhCCe
Confidence            5999999999999999   754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.05  E-value=0.015  Score=46.56  Aligned_cols=18  Identities=28%  Similarity=0.326  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+.+.|.+.
T Consensus        31 ~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           31 TGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.94  E-value=0.2  Score=43.56  Aligned_cols=18  Identities=28%  Similarity=0.529  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+||||+++.+.+.
T Consensus        50 ~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           50 LGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.85  E-value=0.018  Score=45.07  Aligned_cols=17  Identities=29%  Similarity=0.526  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++|+||||++.+|.+
T Consensus        32 ~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           32 VGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.83  E-value=0.014  Score=51.42  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|.
T Consensus       176 vG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          176 LGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             ECCTTSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999985

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=93.75  E-value=0.011  Score=48.97  Aligned_cols=18  Identities=33%  Similarity=0.588  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||+++|.|-
T Consensus        33 ~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           33 SGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HSCCSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            599999999999999884

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=93.54  E-value=0.02  Score=44.40  Aligned_cols=17  Identities=41%  Similarity=0.603  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|+||||+.+.|.+
T Consensus        14 ~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A           14 MGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999998865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.54  E-value=0.02  Score=47.35  Aligned_cols=18  Identities=22%  Similarity=0.353  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+||||+++.|.|.
T Consensus        31 ~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           31 SGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.35  E-value=0.028  Score=52.34  Aligned_cols=19  Identities=42%  Similarity=0.796  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|.-
T Consensus        31 iGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           31 LGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999963

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.31  E-value=0.029  Score=52.26  Aligned_cols=19  Identities=37%  Similarity=0.671  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        53 vG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           53 VGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999963

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=93.26  E-value=0.029  Score=43.03  Aligned_cols=17  Identities=18%  Similarity=0.053  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            7 EGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.24  E-value=0.025  Score=45.79  Aligned_cols=18  Identities=22%  Similarity=0.416  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+.+.|.+.
T Consensus        11 ~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A           11 DGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=93.22  E-value=0.031  Score=42.74  Aligned_cols=15  Identities=33%  Similarity=0.428  Sum_probs=14.1

Q ss_pred             CCCCCCCHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSV   15 (256)
Q Consensus         1 vG~tG~GKSSliN~l   15 (256)
                      +|.+||||||+.+.|
T Consensus         7 ~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            7 TGMPGSGKSEFAKLL   21 (179)
T ss_dssp             ECCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            499999999999999

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.20  E-value=0.031  Score=52.48  Aligned_cols=19  Identities=32%  Similarity=0.429  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|--
T Consensus       375 vG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          375 VGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999963

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=93.19  E-value=0.032  Score=43.29  Aligned_cols=18  Identities=28%  Similarity=0.339  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+||||||+.+.|...
T Consensus         9 ~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            9 NGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.12  E-value=0.032  Score=52.76  Aligned_cols=19  Identities=32%  Similarity=0.765  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus       109 vGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          109 VGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHhcCC
Confidence            6999999999999999964

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.10  E-value=0.035  Score=42.49  Aligned_cols=16  Identities=38%  Similarity=0.843  Sum_probs=14.4

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+||||++.+|.
T Consensus        29 ~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           29 IGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.02  E-value=0.036  Score=44.26  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|.+
T Consensus         8 ~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            8 TGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             ECSTTSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999976

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.93  E-value=0.03  Score=52.59  Aligned_cols=19  Identities=26%  Similarity=0.431  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|--
T Consensus       375 vG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          375 VGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EECTTSSHHHHHHHHTTTT
T ss_pred             ECCCCCCHHHHHHHHhhcc
Confidence            5999999999999999963

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=92.88  E-value=0.029  Score=51.52  Aligned_cols=17  Identities=35%  Similarity=0.608  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++|+|||||++.|.|
T Consensus        35 iG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           35 SGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            59999999999999987

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=92.82  E-value=0.028  Score=46.01  Aligned_cols=18  Identities=28%  Similarity=0.305  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+++.|.+.
T Consensus        26 ~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           26 EGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             ECSTTSCHHHHHHTTGGG
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            499999999999999875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.82  E-value=0.018  Score=49.77  Aligned_cols=18  Identities=28%  Similarity=0.525  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||++|.|+|.
T Consensus        10 ~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A           10 TGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EESSSSSCHHHHHHHHHS
T ss_pred             EecCCCCHHHHHHHHHhh
Confidence            489999999999999975

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=92.81  E-value=0.04  Score=45.85  Aligned_cols=16  Identities=25%  Similarity=0.488  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++||||||+++.|.
T Consensus        33 ~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           33 DGPSGAGKGTLCKALA   48 (252)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999998

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.76  E-value=0.038  Score=52.20  Aligned_cols=19  Identities=32%  Similarity=0.658  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus       123 iG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          123 VGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCChHHHHHHHHhCCC
Confidence            6999999999999999964

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=92.76  E-value=0.026  Score=48.55  Aligned_cols=18  Identities=33%  Similarity=0.364  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+|||||++.|.|.
T Consensus        86 ~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           86 AGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=92.71  E-value=0.026  Score=52.93  Aligned_cols=19  Identities=32%  Similarity=0.375  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|.-
T Consensus       373 vG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          373 VGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             ECSTTSSHHHHHTTTTTSS
T ss_pred             ECCCCChHHHHHHHHhcCC
Confidence            6999999999999999963

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.62  E-value=0.032  Score=52.47  Aligned_cols=19  Identities=32%  Similarity=0.438  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|--
T Consensus       375 vG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          375 LGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             ECSSSSSHHHHHHTTTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999999963

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.59  E-value=0.3  Score=40.76  Aligned_cols=18  Identities=33%  Similarity=0.479  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++.+.
T Consensus        57 ~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           57 YGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             ESSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            399999999999999754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=92.58  E-value=0.029  Score=44.91  Aligned_cols=17  Identities=24%  Similarity=0.286  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|+||||+++.|.+
T Consensus        28 ~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           28 DGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.57  E-value=0.03  Score=52.80  Aligned_cols=19  Identities=32%  Similarity=0.475  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|--
T Consensus       387 vG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          387 VGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             ECCTTSSTTHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCc
Confidence            6999999999999999963

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=92.53  E-value=0.038  Score=44.19  Aligned_cols=18  Identities=17%  Similarity=0.267  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+.+.|.+.
T Consensus        27 ~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           27 SGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EESTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            489999999999999886

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=92.50  E-value=0.045  Score=42.28  Aligned_cols=17  Identities=35%  Similarity=0.501  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+.+.|..
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            8 IGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHh
Confidence            49999999999999975

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.43  E-value=0.63  Score=42.07  Aligned_cols=17  Identities=29%  Similarity=0.470  Sum_probs=15.8

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+|||+++.++.++
T Consensus       222 GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          222 GPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             SCTTSSHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHH
Confidence            99999999999999875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=92.40  E-value=0.046  Score=43.53  Aligned_cols=17  Identities=41%  Similarity=0.581  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|.+
T Consensus        24 ~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           24 MGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.37  E-value=0.047  Score=50.86  Aligned_cols=19  Identities=32%  Similarity=0.716  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus       300 ~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          300 LGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=92.26  E-value=0.05  Score=43.34  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+...|.+
T Consensus        31 ~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           31 TGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999998874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=92.25  E-value=0.04  Score=45.53  Aligned_cols=18  Identities=44%  Similarity=0.743  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+||||++++|.+.
T Consensus        55 ~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           55 VGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=92.22  E-value=0.04  Score=44.32  Aligned_cols=17  Identities=29%  Similarity=0.391  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++|+|||||++.|.+
T Consensus        29 ~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           29 TGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999999985

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=92.21  E-value=0.041  Score=47.85  Aligned_cols=18  Identities=33%  Similarity=0.340  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+||||||+++.|.+.
T Consensus        98 ~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           98 AGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999888653

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=92.07  E-value=0.035  Score=50.70  Aligned_cols=18  Identities=22%  Similarity=0.333  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.|-
T Consensus       144 vGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          144 VGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             EESTTSSHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhCc
Confidence            599999999999999985

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=91.99  E-value=0.038  Score=43.99  Aligned_cols=17  Identities=29%  Similarity=0.368  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|.+
T Consensus         7 ~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            7 TGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            48999999999999976

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=91.92  E-value=0.55  Score=38.39  Aligned_cols=18  Identities=33%  Similarity=0.534  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++..+
T Consensus        45 ~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           45 LGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             ESCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999999763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=91.85  E-value=0.046  Score=46.23  Aligned_cols=18  Identities=33%  Similarity=0.497  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||+++|.|.
T Consensus        50 ~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           50 AGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             ESSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999999874

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=91.81  E-value=0.17  Score=44.69  Aligned_cols=54  Identities=20%  Similarity=0.262  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           61 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        61 ~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +.+.+.++.+.  ...|++|+|+++.+     .+..+...+.+.++.   +++++|+||+|+.+
T Consensus        57 e~f~~~l~~i~--~~~~~il~VvD~~d-----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~  110 (368)
T 3h2y_A           57 DDFLRILNGIG--KSDALVVKIVDIFD-----FNGSWLPGLHRFVGN---NKVLLVGNKADLIP  110 (368)
T ss_dssp             HHHHHHHHHHH--HSCCEEEEEEETTS-----HHHHCCTTHHHHSSS---SCEEEEEECGGGSC
T ss_pred             HHHHHHHHHHh--ccCcEEEEEEECCC-----CcccHHHHHHHHhCC---CcEEEEEEChhcCC
Confidence            44444444333  47889999977753     234555666666653   79999999999963

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=91.73  E-value=0.32  Score=42.04  Aligned_cols=18  Identities=28%  Similarity=0.484  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||++++.+...
T Consensus        50 ~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           50 YGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CBCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999864

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=91.72  E-value=0.85  Score=40.02  Aligned_cols=17  Identities=24%  Similarity=0.419  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|++|+|||||+..+..
T Consensus        67 ~GppGsGKSTLal~la~   83 (356)
T 3hr8_A           67 FGQESSGKTTLALHAIA   83 (356)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999988775

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=91.64  E-value=0.064  Score=41.84  Aligned_cols=17  Identities=29%  Similarity=0.421  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        11 ~G~~GsGKst~a~~La~   27 (185)
T 3trf_A           11 IGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998853

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=91.57  E-value=0.066  Score=42.22  Aligned_cols=17  Identities=29%  Similarity=0.466  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+++.|..
T Consensus         6 ~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            6 FGTVGAGKSTISAEISK   22 (205)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHH
Confidence            49999999999998875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=91.47  E-value=0.08  Score=41.27  Aligned_cols=17  Identities=24%  Similarity=0.476  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+++.|..
T Consensus         9 ~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            9 TGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=91.32  E-value=0.99  Score=37.76  Aligned_cols=18  Identities=33%  Similarity=0.462  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||++++++.+.
T Consensus        60 ~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           60 FGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             ESSSSSCHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHH
Confidence            499999999999999764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.31  E-value=0.072  Score=49.55  Aligned_cols=20  Identities=30%  Similarity=0.589  Sum_probs=17.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|++|+|||||++.|.|...
T Consensus       318 ~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          318 VGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            59999999999999999643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=91.30  E-value=0.059  Score=46.05  Aligned_cols=18  Identities=33%  Similarity=0.381  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+++.|.+.
T Consensus        37 ~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           37 SGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999988764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=91.27  E-value=0.061  Score=41.96  Aligned_cols=17  Identities=41%  Similarity=0.548  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+++.|..
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            7 TGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.26  E-value=0.073  Score=50.28  Aligned_cols=19  Identities=32%  Similarity=0.653  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus       388 ~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          388 VGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=91.25  E-value=0.075  Score=41.41  Aligned_cols=17  Identities=24%  Similarity=0.518  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        10 ~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A           10 LGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998863

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=91.21  E-value=0.061  Score=45.19  Aligned_cols=18  Identities=44%  Similarity=0.743  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||+++|.+.
T Consensus        79 ~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           79 VGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCcChHHHHHHHHHHH
Confidence            599999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=91.16  E-value=0.062  Score=42.96  Aligned_cols=17  Identities=18%  Similarity=0.026  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++|+|||||++.|.+
T Consensus        26 ~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           26 YGPYASGKTTLALQTGL   42 (220)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999987

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=91.14  E-value=0.078  Score=44.16  Aligned_cols=17  Identities=18%  Similarity=0.231  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|.+
T Consensus         7 ~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            7 YGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=91.13  E-value=0.052  Score=47.67  Aligned_cols=19  Identities=26%  Similarity=0.447  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus        77 iG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           77 FAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EECTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.07  E-value=0.077  Score=50.13  Aligned_cols=20  Identities=30%  Similarity=0.602  Sum_probs=17.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|++|+|||||++.|.|-..
T Consensus       384 iG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          384 MGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             ESCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCCcHHHHHHHHhcCCC
Confidence            59999999999999999643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=91.02  E-value=0.085  Score=41.43  Aligned_cols=18  Identities=17%  Similarity=0.329  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+++.|+..
T Consensus        10 ~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A           10 VGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            489999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=90.98  E-value=0.067  Score=41.87  Aligned_cols=17  Identities=18%  Similarity=0.348  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        11 ~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A           11 TGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998854

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=90.97  E-value=0.063  Score=46.55  Aligned_cols=18  Identities=28%  Similarity=0.545  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.+.
T Consensus        57 ~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           57 AGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             ESSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999999875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=90.97  E-value=0.085  Score=42.42  Aligned_cols=16  Identities=38%  Similarity=0.843  Sum_probs=14.2

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+||||++.+|.
T Consensus        29 ~G~NgsGKStil~ai~   44 (203)
T 3qks_A           29 IGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            5999999999999874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=90.93  E-value=0.085  Score=41.02  Aligned_cols=18  Identities=22%  Similarity=0.322  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+.+.|.+.
T Consensus        11 ~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A           11 TGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998763

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=90.87  E-value=0.056  Score=48.99  Aligned_cols=19  Identities=26%  Similarity=0.331  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus       163 vG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          163 FAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EECTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            5999999999999999864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=90.86  E-value=0.056  Score=45.83  Aligned_cols=18  Identities=28%  Similarity=0.326  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|.+.
T Consensus        41 ~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           41 TSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            589999999999988763

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.82  E-value=1.1  Score=40.37  Aligned_cols=17  Identities=29%  Similarity=0.507  Sum_probs=15.9

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+|||+++.++.++
T Consensus       223 GPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          223 GAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             SSTTTTHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHH
Confidence            99999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=90.61  E-value=0.093  Score=40.79  Aligned_cols=16  Identities=31%  Similarity=0.515  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|.+|+||||+.+.|.
T Consensus        17 ~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           17 TGTPGVGKTTLGKELA   32 (180)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            4999999999999887

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=90.57  E-value=0.077  Score=43.11  Aligned_cols=18  Identities=17%  Similarity=0.268  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||+..|.+.
T Consensus        30 ~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           30 FGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=90.53  E-value=0.095  Score=41.12  Aligned_cols=18  Identities=33%  Similarity=0.556  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+||||||+.+.|...
T Consensus        16 ~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           16 TGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999988654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.50  E-value=0.052  Score=55.88  Aligned_cols=18  Identities=33%  Similarity=0.433  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      ||+||+||||+++.|++-
T Consensus      1111 VG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1111 VGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             ECSTTSSTTSHHHHHTTS
T ss_pred             ECCCCChHHHHHHHHhcC
Confidence            699999999999999984

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=90.38  E-value=0.082  Score=44.98  Aligned_cols=17  Identities=29%  Similarity=0.474  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+.+.|..
T Consensus        39 ~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           39 GGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             ECCTTSCTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999964

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=90.27  E-value=0.11  Score=40.32  Aligned_cols=17  Identities=29%  Similarity=0.423  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|+||||+...|..
T Consensus        10 ~G~~GsGKsTla~~La~   26 (175)
T 1via_A           10 IGFMGSGKSTLARALAK   26 (175)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=90.20  E-value=0.11  Score=40.70  Aligned_cols=18  Identities=22%  Similarity=0.350  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+++.|.+.
T Consensus        19 ~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           19 TGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.15  E-value=0.084  Score=52.50  Aligned_cols=19  Identities=42%  Similarity=0.753  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus       705 iGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          705 IGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             CSCCCHHHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=90.12  E-value=0.13  Score=39.52  Aligned_cols=18  Identities=33%  Similarity=0.660  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||++++.+...
T Consensus        49 ~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           49 IGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.08  E-value=1.1  Score=40.22  Aligned_cols=17  Identities=35%  Similarity=0.552  Sum_probs=15.7

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+|||+++.++.++
T Consensus       213 GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          213 GPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             SCTTTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.05  E-value=0.087  Score=54.23  Aligned_cols=18  Identities=28%  Similarity=0.575  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+||||+++.|+|.
T Consensus       450 vG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          450 VGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             EECSSSCHHHHHHHHTTS
T ss_pred             EecCCCcHHHHHHHhccc
Confidence            699999999999999996

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=90.01  E-value=0.094  Score=53.82  Aligned_cols=19  Identities=37%  Similarity=0.494  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|+|.-
T Consensus       422 vG~sGsGKSTl~~ll~g~~  440 (1284)
T 3g5u_A          422 VGNSGCGKSTTVQLMQRLY  440 (1284)
T ss_dssp             ECCSSSSHHHHHHHTTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999863

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=89.99  E-value=0.11  Score=41.57  Aligned_cols=16  Identities=38%  Similarity=0.706  Sum_probs=14.4

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|.+||||||+.+.|.
T Consensus         6 ~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            6 MGLPGAGKGTQAEQII   21 (216)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999884

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=89.92  E-value=2.1  Score=36.27  Aligned_cols=17  Identities=18%  Similarity=0.399  Sum_probs=14.7

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+|||+++.++...
T Consensus        55 G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           55 PSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             SSTTSSHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHH
Confidence            77999999999998643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=89.84  E-value=0.12  Score=40.83  Aligned_cols=18  Identities=17%  Similarity=0.316  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.+||||||+++.|...
T Consensus        10 ~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A           10 EGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             ECCTTSSHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999998754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=89.81  E-value=0.094  Score=43.80  Aligned_cols=17  Identities=24%  Similarity=0.339  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|+||||+.+.|.+
T Consensus        54 ~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           54 VGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=89.62  E-value=0.13  Score=39.51  Aligned_cols=17  Identities=18%  Similarity=0.370  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+.+.|..
T Consensus         8 ~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            8 VGARGCGMTTVGRELAR   24 (173)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988853

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=89.44  E-value=0.13  Score=40.00  Aligned_cols=17  Identities=24%  Similarity=0.589  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus         9 ~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            9 LGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=89.41  E-value=0.15  Score=40.29  Aligned_cols=17  Identities=35%  Similarity=0.407  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+++.|..
T Consensus        10 ~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A           10 EGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999999864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=89.39  E-value=0.13  Score=44.67  Aligned_cols=16  Identities=38%  Similarity=0.843  Sum_probs=14.5

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+||||++.+|.
T Consensus        29 ~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           29 IGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999974

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=89.38  E-value=0.1  Score=46.26  Aligned_cols=18  Identities=17%  Similarity=0.235  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+||||+++.|.+.
T Consensus       175 ~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          175 KGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            499999999999999863

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=89.34  E-value=0.13  Score=41.15  Aligned_cols=17  Identities=29%  Similarity=0.558  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            6 MGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=89.25  E-value=0.14  Score=41.17  Aligned_cols=17  Identities=35%  Similarity=0.470  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+.+.|..
T Consensus        10 ~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A           10 TGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=89.24  E-value=0.14  Score=39.11  Aligned_cols=17  Identities=24%  Similarity=0.145  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            6 IGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             ESCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=89.24  E-value=0.049  Score=43.47  Aligned_cols=18  Identities=33%  Similarity=0.566  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+||||||+++.|...
T Consensus         6 ~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            6 EGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            488999999999998753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=89.19  E-value=0.088  Score=50.19  Aligned_cols=16  Identities=50%  Similarity=0.752  Sum_probs=14.4

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+|||||+|.++
T Consensus       354 iGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          354 TGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             ECSTTSSHHHHHTTTH
T ss_pred             EeeCCCCHHHHHHHHH
Confidence            6999999999998765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=89.18  E-value=0.16  Score=39.56  Aligned_cols=17  Identities=24%  Similarity=0.438  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            6 EGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=89.09  E-value=0.12  Score=41.14  Aligned_cols=17  Identities=24%  Similarity=0.313  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+++.|..
T Consensus        16 ~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           16 EGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            48999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=89.03  E-value=0.12  Score=40.42  Aligned_cols=17  Identities=24%  Similarity=0.569  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        15 ~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           15 VGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998853

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=88.90  E-value=0.12  Score=42.62  Aligned_cols=18  Identities=33%  Similarity=0.649  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.+|.+.
T Consensus        51 ~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           51 VGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHH
Confidence            499999999999999764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=88.89  E-value=0.13  Score=40.60  Aligned_cols=18  Identities=28%  Similarity=0.272  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+||||||+.+.|...
T Consensus        14 ~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           14 TGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EECTTSCHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHC
Confidence            489999999999998764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=88.81  E-value=0.16  Score=39.58  Aligned_cols=17  Identities=29%  Similarity=0.388  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+...|..
T Consensus         8 ~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            8 VGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=88.78  E-value=4  Score=34.85  Aligned_cols=18  Identities=39%  Similarity=0.529  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++..+
T Consensus        51 ~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           51 FGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             ESSSSSCHHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHHH
Confidence            399999999999999864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.77  E-value=0.1  Score=45.06  Aligned_cols=16  Identities=31%  Similarity=0.694  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+||||++.+|.
T Consensus        30 ~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           30 VGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             ECCTTTCSTHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            5999999999999987

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=88.75  E-value=0.18  Score=44.43  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=29.9

Q ss_pred             CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      .+.+++++|+++.+.  .   ..+...+.+.++.   +++++|+||+|+.+
T Consensus        70 ~~~~lil~VvD~~d~--~---~s~~~~l~~~l~~---~piilV~NK~DLl~  112 (369)
T 3ec1_A           70 ESKALVVNIVDIFDF--N---GSFIPGLPRFAAD---NPILLVGNKADLLP  112 (369)
T ss_dssp             HHCCEEEEEEETTCS--G---GGCCSSHHHHCTT---SCEEEEEECGGGSC
T ss_pred             ccCcEEEEEEECCCC--C---CchhhHHHHHhCC---CCEEEEEEChhcCC
Confidence            468899999777642  2   1334444555553   79999999999964

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=88.65  E-value=0.13  Score=46.29  Aligned_cols=17  Identities=29%  Similarity=0.546  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++|+||||++++|.+
T Consensus        32 ~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           32 IGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999999875

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.59  E-value=2.3  Score=38.60  Aligned_cols=18  Identities=28%  Similarity=0.453  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++.++
T Consensus       249 yGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          249 YGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CSCTTSSHHHHHHHHHHH
T ss_pred             eCCCCCcHHHHHHHHHhc
Confidence            499999999999999875

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=88.51  E-value=0.037  Score=49.27  Aligned_cols=16  Identities=38%  Similarity=0.551  Sum_probs=14.2

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+|||||+++|.
T Consensus        66 vG~NGaGKStLl~aI~   81 (415)
T 4aby_A           66 TGETGAGKSIIVDALG   81 (415)
T ss_dssp             EESHHHHHHHHTHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=88.49  E-value=0.17  Score=40.03  Aligned_cols=17  Identities=24%  Similarity=0.587  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        21 ~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           21 LGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=88.47  E-value=0.14  Score=40.17  Aligned_cols=17  Identities=24%  Similarity=0.565  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        18 ~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           18 IGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=88.34  E-value=0.14  Score=41.44  Aligned_cols=16  Identities=31%  Similarity=0.592  Sum_probs=14.5

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|.+||||||+.+.|.
T Consensus        13 ~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A           13 MGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4899999999999886

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=88.30  E-value=0.14  Score=41.26  Aligned_cols=17  Identities=18%  Similarity=0.259  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+++.|..
T Consensus        11 ~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A           11 SGAPASGKGTQCELIKT   27 (222)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=88.27  E-value=0.17  Score=40.46  Aligned_cols=18  Identities=22%  Similarity=0.252  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+++.|.+.
T Consensus        31 ~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           31 TGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=88.26  E-value=0.18  Score=39.91  Aligned_cols=17  Identities=24%  Similarity=0.468  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|+||||+.+.|..
T Consensus        26 ~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           26 LGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=88.18  E-value=0.15  Score=40.59  Aligned_cols=17  Identities=24%  Similarity=0.376  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+++.|..
T Consensus        15 ~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           15 EGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=88.16  E-value=0.14  Score=50.99  Aligned_cols=19  Identities=26%  Similarity=0.539  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|..
T Consensus       467 iGpNGsGKSTLLk~LagG~  485 (986)
T 2iw3_A          467 CGPNGCGKSTLMRAIANGQ  485 (986)
T ss_dssp             ECSTTSSHHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=88.15  E-value=0.15  Score=39.66  Aligned_cols=17  Identities=24%  Similarity=0.585  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+.+.|..
T Consensus        12 ~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A           12 LGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998853

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=88.14  E-value=0.21  Score=39.41  Aligned_cols=18  Identities=33%  Similarity=0.504  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++...
T Consensus        60 ~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           60 HGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998864

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=88.09  E-value=0.18  Score=44.57  Aligned_cols=18  Identities=33%  Similarity=0.434  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+|||++++.|+..
T Consensus        41 ~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           41 LAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            599999999999999864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.05  E-value=2.6  Score=37.55  Aligned_cols=17  Identities=29%  Similarity=0.432  Sum_probs=15.8

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+|||+++.++.++
T Consensus       189 GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          189 GPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             SCSSSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            99999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=88.00  E-value=0.19  Score=41.89  Aligned_cols=17  Identities=35%  Similarity=0.475  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        10 ~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A           10 TGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999998864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=88.00  E-value=0.19  Score=41.53  Aligned_cols=17  Identities=35%  Similarity=0.472  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|++|+||||+.+.|..
T Consensus        15 ~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           15 DGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998873

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=87.91  E-value=0.18  Score=40.75  Aligned_cols=19  Identities=37%  Similarity=0.566  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|+||+|||++...|...-
T Consensus        40 ~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           40 TGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             ECCCTTTTHHHHHHHHTTT
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            4999999999999998753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=87.91  E-value=0.19  Score=40.39  Aligned_cols=17  Identities=24%  Similarity=0.481  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        10 ~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A           10 IGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=87.88  E-value=0.15  Score=44.84  Aligned_cols=17  Identities=24%  Similarity=0.479  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++|+||||++++|.+
T Consensus        32 ~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           32 YGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCChhHHHHHHHH
Confidence            59999999999999875

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=87.85  E-value=0.15  Score=44.13  Aligned_cols=19  Identities=37%  Similarity=0.574  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|.||+||||+.+.|++..
T Consensus       150 ~G~sG~GKSt~a~~l~~~g  168 (314)
T 1ko7_A          150 TGDSGIGKSETALELIKRG  168 (314)
T ss_dssp             EESTTSSHHHHHHHHHHTT
T ss_pred             EeCCCCCHHHHHHHHHhcC
Confidence            4899999999999999753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=87.83  E-value=0.99  Score=38.45  Aligned_cols=45  Identities=9%  Similarity=0.146  Sum_probs=30.1

Q ss_pred             CCCcEEEEEEeCCCCCCCHHH-HHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           74 KTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        74 ~~~d~vL~v~~~d~~r~~~~~-~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..+|++++|+++....++... .+++..+..   .  ..+.++|+||+|+.
T Consensus        78 ~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~--~~~~ilV~NK~DL~  123 (302)
T 2yv5_A           78 ANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---F--KVEPVIVFNKIDLL  123 (302)
T ss_dssp             ESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---T--TCEEEEEECCGGGC
T ss_pred             HhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---C--CCCEEEEEEcccCC
Confidence            589999999888753334332 234444433   1  27899999999985

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=87.82  E-value=0.2  Score=40.02  Aligned_cols=17  Identities=35%  Similarity=0.472  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        18 tG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           18 TGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999988864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=87.78  E-value=0.12  Score=39.97  Aligned_cols=17  Identities=35%  Similarity=0.468  Sum_probs=10.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+.+.|..
T Consensus        11 ~G~~GsGKST~a~~La~   27 (183)
T 2vli_A           11 NGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             ECCC----CHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=87.70  E-value=0.13  Score=43.14  Aligned_cols=17  Identities=29%  Similarity=0.448  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++|+|||||+..+.+
T Consensus        36 ~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           36 VSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            48999999999998886

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=87.64  E-value=0.2  Score=40.56  Aligned_cols=17  Identities=35%  Similarity=0.493  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            6 FGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=87.62  E-value=0.21  Score=38.26  Aligned_cols=17  Identities=35%  Similarity=0.290  Sum_probs=14.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+...|..
T Consensus        13 ~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A           13 IGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998743

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=87.52  E-value=0.091  Score=49.04  Aligned_cols=18  Identities=28%  Similarity=0.494  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+||||||+++.|.+.
T Consensus       375 iG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          375 TGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             EESSCHHHHHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHHh
Confidence            599999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=87.48  E-value=0.24  Score=39.71  Aligned_cols=18  Identities=11%  Similarity=0.265  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++...
T Consensus        58 ~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           58 WGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=87.46  E-value=0.19  Score=51.51  Aligned_cols=19  Identities=32%  Similarity=0.408  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|+|-.
T Consensus      1065 vG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A         1065 VGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp             ECSSSTTHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCc
Confidence            6999999999999999953

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=87.29  E-value=0.12  Score=42.76  Aligned_cols=17  Identities=24%  Similarity=0.309  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|+||||+.+.|..
T Consensus        38 ~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           38 GGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             ESCGGGTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=87.25  E-value=0.18  Score=38.63  Aligned_cols=18  Identities=33%  Similarity=0.602  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++..+...
T Consensus        49 ~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           49 LGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             ESCGGGCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=87.11  E-value=0.19  Score=40.35  Aligned_cols=17  Identities=18%  Similarity=0.368  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            6 LGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998853

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=87.11  E-value=0.18  Score=44.32  Aligned_cols=16  Identities=44%  Similarity=0.758  Sum_probs=14.1

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+||||++.||.
T Consensus        31 ~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           31 IGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998864

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=87.04  E-value=0.33  Score=41.99  Aligned_cols=17  Identities=35%  Similarity=0.499  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|++|+||||++..+..
T Consensus        44 ~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           44 SGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999988865

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=86.84  E-value=0.26  Score=43.07  Aligned_cols=51  Identities=20%  Similarity=0.291  Sum_probs=32.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-cccC--------CCCCcceeEEEEeeeCCeEEEEEeCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV-TVNS--------FQSEALRPVMVSRSKGGFTLNIIDTPGL   53 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~-~~~~--------~~~~t~~~~~~~~~~~g~~v~liDTPG~   53 (256)
                      +|+||||||||...|...-.. .++.        ..-+|..+.  ..+..|.+..++|...+
T Consensus        46 ~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~~gvphhlidi~~~  105 (339)
T 3a8t_A           46 MGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDRGGVPHHLLGEVDP  105 (339)
T ss_dssp             ECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGGTTCCEESSSCBCG
T ss_pred             ECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHHcCCCEeeccccCc
Confidence            599999999999999875321 1111        112333332  23466777788888777

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=86.78  E-value=1.5  Score=38.44  Aligned_cols=18  Identities=33%  Similarity=0.514  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++..+
T Consensus       154 ~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          154 FGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             ESSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            399999999999999643

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.78  E-value=0.19  Score=43.29  Aligned_cols=18  Identities=22%  Similarity=0.499  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+||||+++.|.+.
T Consensus        42 ~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           42 YGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             ECSTTSSHHHHHHTHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998773

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=86.71  E-value=0.24  Score=41.78  Aligned_cols=17  Identities=35%  Similarity=0.501  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            8 IGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999875

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=86.62  E-value=0.27  Score=45.35  Aligned_cols=18  Identities=39%  Similarity=0.492  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.||+|||+++|+|+..
T Consensus       173 aG~TGSGKSt~L~~li~s  190 (512)
T 2ius_A          173 AGTTGSGASVGVNAMILS  190 (512)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998753

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=86.59  E-value=2.5  Score=37.90  Aligned_cols=18  Identities=39%  Similarity=0.529  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++...
T Consensus       173 ~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          173 FGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999999864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=86.57  E-value=0.29  Score=38.58  Aligned_cols=17  Identities=35%  Similarity=0.401  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+|+||||+.+.|.+
T Consensus         8 ~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            8 DGPSASGKSSVARRVAA   24 (208)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998854

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=86.46  E-value=0.26  Score=40.54  Aligned_cols=17  Identities=24%  Similarity=0.397  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+...|..
T Consensus        35 ~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           35 LGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998863

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=86.18  E-value=0.32  Score=38.20  Aligned_cols=18  Identities=28%  Similarity=0.475  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++..+...
T Consensus        44 ~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           44 SGPPGTGKTATAIALARD   61 (226)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999988753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=86.11  E-value=0.28  Score=42.52  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-ccc--------CCCCCcceeEEEEeeeCCeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV-TVN--------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~-~~~--------~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~   56 (256)
                      +|+||||||||...|...-.. .++        ...-+|..+.  ..+.+|.+-.++|.-.+.+.
T Consensus         9 ~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~--~~E~~gvphhlid~~~~~e~   71 (322)
T 3exa_A            9 VGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKIT--AEEMDGVPHHLIDIKDPSES   71 (322)
T ss_dssp             ECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCC--HHHHTTCCEESSSCBCTTSC
T ss_pred             ECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCC--HHHHcCCCEEEeccCChhhh
Confidence            499999999999999754211 111        1122333332  23566777788887776653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=85.99  E-value=0.28  Score=39.88  Aligned_cols=17  Identities=24%  Similarity=0.487  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|+||||+.+.|..
T Consensus        22 ~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           22 LGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=85.98  E-value=0.32  Score=38.60  Aligned_cols=18  Identities=33%  Similarity=0.457  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++..+...
T Consensus        51 ~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           51 SGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999988753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=85.94  E-value=0.33  Score=39.71  Aligned_cols=18  Identities=33%  Similarity=0.564  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.+|+||||+++.|...
T Consensus        32 ~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           32 EGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999988764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=85.72  E-value=0.29  Score=42.42  Aligned_cols=18  Identities=22%  Similarity=0.379  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+|||||||+...|...
T Consensus        11 ~GptGsGKTtla~~La~~   28 (323)
T 3crm_A           11 MGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=85.65  E-value=5.6  Score=39.37  Aligned_cols=15  Identities=27%  Similarity=0.317  Sum_probs=14.1

Q ss_pred             CCCCCCCHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSV   15 (256)
Q Consensus         1 vG~tG~GKSSliN~l   15 (256)
                      +|++|+||||+++.+
T Consensus       668 tGpNGsGKSTlLr~i  682 (934)
T 3thx_A          668 TGPNMGGKSTYIRQT  682 (934)
T ss_dssp             ECCTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999998

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=85.44  E-value=2  Score=36.82  Aligned_cols=47  Identities=6%  Similarity=-0.005  Sum_probs=30.1

Q ss_pred             CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ..+|.+++|+++....++..  .+-+.|......+  ++.++|+||+|+.+
T Consensus        85 anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~~~~--~~~vivlnK~DL~~  131 (307)
T 1t9h_A           85 CNVDQAVLVFSAVQPSFSTA--LLDRFLVLVEAND--IQPIICITKMDLIE  131 (307)
T ss_dssp             ECCCEEEEEEESTTTTCCHH--HHHHHHHHHHTTT--CEEEEEEECGGGCC
T ss_pred             HhCCEEEEEEeCCCCCCCHH--HHHHHHHHHHHCC--CCEEEEEECCccCc
Confidence            47999999977764344443  2333333222222  78899999999964

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=85.41  E-value=0.37  Score=36.14  Aligned_cols=18  Identities=17%  Similarity=0.233  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||++..+|...
T Consensus        30 ~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           30 YGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             ESSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=85.39  E-value=0.35  Score=39.85  Aligned_cols=17  Identities=29%  Similarity=0.427  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+.+.|..
T Consensus        28 ~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           28 SGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=85.37  E-value=0.26  Score=39.62  Aligned_cols=17  Identities=24%  Similarity=0.440  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        11 ~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A           11 IGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998843

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=85.36  E-value=0.32  Score=42.04  Aligned_cols=18  Identities=22%  Similarity=0.241  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+||||||||...|...
T Consensus        16 ~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           16 MGPTASGKTALAIELRKI   33 (316)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHHh
Confidence            499999999999999753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=85.33  E-value=0.21  Score=43.70  Aligned_cols=18  Identities=22%  Similarity=0.344  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.+.+.
T Consensus       137 ~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          137 FGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            489999999999999875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=85.28  E-value=0.34  Score=40.02  Aligned_cols=18  Identities=39%  Similarity=0.654  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++.+.
T Consensus        50 ~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           50 VGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             BCSSCSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999999764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=85.27  E-value=0.31  Score=42.55  Aligned_cols=18  Identities=22%  Similarity=0.285  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+|||||||+...|...
T Consensus        13 ~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A           13 VGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCcCcHHHHHHHHHHH
Confidence            499999999999888753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=84.78  E-value=0.23  Score=45.88  Aligned_cols=15  Identities=27%  Similarity=0.353  Sum_probs=13.7

Q ss_pred             CCCCCCCHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSV   15 (256)
Q Consensus         1 vG~tG~GKSSliN~l   15 (256)
                      +|++|+|||||++.+
T Consensus        45 ~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           45 SGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EESTTSSHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHH
Confidence            599999999999984

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=84.73  E-value=0.3  Score=39.55  Aligned_cols=16  Identities=25%  Similarity=0.401  Sum_probs=13.5

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+|||||+..++
T Consensus        29 ~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           29 SGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4899999999976665

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=84.66  E-value=0.32  Score=41.60  Aligned_cols=18  Identities=28%  Similarity=0.423  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.++.+.
T Consensus        43 ~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           43 YGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            399999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=84.44  E-value=0.3  Score=41.23  Aligned_cols=16  Identities=38%  Similarity=0.509  Sum_probs=14.5

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      .|.+||||||+.+.|.
T Consensus        81 ~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           81 TGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4899999999999886

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=84.39  E-value=1.8  Score=36.39  Aligned_cols=43  Identities=12%  Similarity=0.162  Sum_probs=27.8

Q ss_pred             CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           74 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        74 ~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ..+|+|+.|+++.+...+. ..    .+.+..+.   ++.++|+||+|+.+
T Consensus        22 ~~aDvVl~VvDAr~p~~~~-~~----~l~~~l~~---kp~ilVlNK~DL~~   64 (282)
T 1puj_A           22 KLIDIVYELVDARIPMSSR-NP----MIEDILKN---KPRIMLLNKADKAD   64 (282)
T ss_dssp             GGCSEEEEEEETTSTTTTS-CH----HHHHHCSS---SCEEEEEECGGGSC
T ss_pred             hhCCEEEEEEeCCCCCccC-CH----HHHHHHCC---CCEEEEEECcccCC
Confidence            5899999997765422221 11    22233333   89999999999963

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=84.11  E-value=0.3  Score=42.22  Aligned_cols=18  Identities=33%  Similarity=0.582  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+||||+++.+.+.
T Consensus        51 ~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           51 YGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            489999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=84.09  E-value=0.34  Score=41.75  Aligned_cols=18  Identities=39%  Similarity=0.601  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+||||++.++.+.
T Consensus        52 ~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           52 YGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=83.88  E-value=0.36  Score=41.01  Aligned_cols=18  Identities=28%  Similarity=0.501  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||++++++.+.
T Consensus        55 ~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           55 YGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHH
Confidence            499999999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=83.63  E-value=1.9  Score=35.25  Aligned_cols=75  Identities=12%  Similarity=0.113  Sum_probs=30.5

Q ss_pred             EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCc---ccccEEEEEecc
Q 025189           44 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ---IWRKSLLVLTHA  120 (256)
Q Consensus        44 ~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~---~~~~~ivv~Tk~  120 (256)
                      ++.+..+||-.+.+.. ..+....+++.  ...|+++||++..+.+..+ -+.-++.|..++.++   .-.+++|+.||.
T Consensus        97 k~~~~~~~~~~~~GGQ-~klRplWr~Yy--~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKq  172 (227)
T 3l82_B           97 KMFSRHNEGDDQQGSR-YSVIPQIQKVC--EVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCIS  172 (227)
T ss_dssp             ---------------------CCHHHHH--HHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEES
T ss_pred             hcccccCCCccccCcH-HHHHHHHHHHh--cCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCC
Confidence            4456677763222111 12222223333  4789999997776543222 233333444544432   135788888986


Q ss_pred             -cC
Q 025189          121 -QL  122 (256)
Q Consensus       121 -D~  122 (256)
                       |+
T Consensus       173 qDl  175 (227)
T 3l82_B          173 QGD  175 (227)
T ss_dssp             STT
T ss_pred             cCc
Confidence             55

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=83.51  E-value=0.42  Score=38.92  Aligned_cols=17  Identities=24%  Similarity=0.329  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|+||||+.+.|.+
T Consensus        22 ~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           22 DGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             ECSSCSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998874

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=83.38  E-value=0.48  Score=40.53  Aligned_cols=18  Identities=33%  Similarity=0.510  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+|+.+|...
T Consensus       158 ~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          158 YGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999988764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=83.27  E-value=0.36  Score=39.19  Aligned_cols=16  Identities=38%  Similarity=0.297  Sum_probs=14.0

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |++|+||||++.+|..
T Consensus        65 GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           65 GPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SCGGGCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999988887764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=83.20  E-value=0.43  Score=42.71  Aligned_cols=18  Identities=28%  Similarity=0.427  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|+||||+.+.|...
T Consensus       264 ~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          264 VGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             ESCTTSSHHHHHHHHTGG
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=82.87  E-value=0.31  Score=36.49  Aligned_cols=18  Identities=11%  Similarity=0.119  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||++..++...
T Consensus        33 ~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           33 TGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             EEETTCCHHHHHGGGCCT
T ss_pred             ECCCCccHHHHHHHHHHh
Confidence            389999999999988764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=82.77  E-value=0.37  Score=40.61  Aligned_cols=18  Identities=28%  Similarity=0.588  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++.+|.+.
T Consensus        53 ~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           53 LGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             ESCSSSSHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHH
Confidence            499999999999988764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=82.68  E-value=0.45  Score=40.30  Aligned_cols=17  Identities=35%  Similarity=0.435  Sum_probs=15.3

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+|||++..++...
T Consensus        43 GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           43 GGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             ECTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999998754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=82.65  E-value=0.22  Score=42.34  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=11.4

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |.+||||||+.+.|..
T Consensus        12 G~sGSGKSTva~~L~~   27 (290)
T 1a7j_A           12 GSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCC---CCTHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=82.60  E-value=0.44  Score=37.67  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.||+||||+.-.|...
T Consensus        22 ~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           22 TGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EESSSSSHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHc
Confidence            489999999999888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	2e-55
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	0.003
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.003
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.004

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  176 bits (448), Expect = 2e-55
 Identities = 147/221 (66%), Positives = 180/221 (81%), Gaps = 1/221 (0%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
           MGKGGVGKSSTVNS+IGERVV+++ FQSE  RPVMVSRS+ GFTLNIIDTPGL+E GY+N
Sbjct: 38  MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 97

Query: 61  YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 120
             AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHA
Sbjct: 98  DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 157

Query: 121 QLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 180
           Q  PPDGL YD + SKRS+ALL+ +R GA L K + +   +PV L+ENSGRC+KN++DEK
Sbjct: 158 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 216

Query: 181 ILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDD 221
           +LPNG AWIP LV+ IT+VA NKS+SI VDK LID   + D
Sbjct: 217 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKLAAAD 257

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 27/220 (12%)

Query: 1   MGKGGVGKSSTVNSVIGERVVTVNSFQS---EALRPVMVSRSKGGFTLNIIDTPGLVEAG 57
            G+ G GKSS +N++ G       + ++   E        +      +   D PG+   G
Sbjct: 62  TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI---G 118

Query: 58  YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 117
             N+     ++     +    ++ +      R    D  I KA+       + ++   V 
Sbjct: 119 STNFPPDTYLEKMKFYEYDFFIIISAT----RFKKNDIDIAKAI-----SMMKKEFYFVR 169

Query: 118 THAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKN-- 175
           T       +  + +     + + +L+ IRL       E      P+ L+ N   C  +  
Sbjct: 170 TKVDSDITNEADGEPQTFDK-EKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFP 228

Query: 176 ---ENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKK 212
              +     LP                  N + S++  K+
Sbjct: 229 VLMDKLISDLPIYKRHN------FMVSLPNITDSVIEKKR 262

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 10/55 (18%), Positives = 18/55 (32%)

Query: 2  GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 56
          G    GKSS + ++            +     + V          + D PG++E 
Sbjct: 8  GYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG 62

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 1  MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 60
          +GK  VGKS+ +N ++ E    V          +       G    I+DT G+       
Sbjct: 6  VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN-- 63

Query: 61 YQALELIKGFLLNKTIDVLLYAD 83
              +L++   + +T+  +  AD
Sbjct: 64 ----DLVERLGIERTLQEIEKAD 82

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 1  MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPG 52
          +G+  VGKS+  N+++ +    V+        PV       G     +DT G
Sbjct: 14 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	100.0
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.78
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.78
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.67
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.64
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.62
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.6
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.59
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.57
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.55
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.43
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.42
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.42
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.4
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.39
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.39
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.39
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.38
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.37
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.37
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.37
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.36
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.35
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.34
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.34
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.34
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.33
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.33
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.33
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.31
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.3
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.29
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.29
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.29
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.26
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.25
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.24
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.24
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.24
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.22
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.22
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.22
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.2
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.2
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.16
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.16
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.14
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.12
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.11
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.11
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.09
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.03
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.02
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.02
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.92
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.92
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.92
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.91
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.85
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.82
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.82
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.81
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.8
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.75
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.74
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.69
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.62
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.6
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.58
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.55
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.55
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.16
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.12
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.87
d1okkd2	207	GTPase domain of the signal recognition particle r	97.82
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.81
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.79
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.66
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.61
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.53
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.16
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.96
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.89
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.89
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.86
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.84
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.79
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.76
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.76
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.75
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.72
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.69
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.64
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.62
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.58
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.5
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.49
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.49
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.42
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.37
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.37
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.29
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.29
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.15
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.13
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.93
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.85
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.8
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.65
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	94.64
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.29
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.26
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.11
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.09
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.83
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.78
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.74
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	93.69
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.67
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.53
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.45
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.44
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.44
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	93.4
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.21
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.86
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	92.83
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.78
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.72
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	92.71
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	92.56
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.53
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	92.48
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.43
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.37
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	92.32
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.2
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.07
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	91.91
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	91.74
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	91.7
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	91.28
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.25
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	91.04
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	90.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.86
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	90.79
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.73
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	90.52
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.43
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.42
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.24
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	90.14
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.04
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.98
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	89.71
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.68
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	89.63
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.62
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	89.62
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	89.56
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	89.54
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	89.27
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	89.04
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	88.99
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	88.75
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	88.64
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	88.36
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	88.15
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	88.1
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	86.89
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	86.6
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	86.52
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	86.52
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	86.48
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	86.43
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	86.31
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	86.25
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	86.18
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	85.95
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	85.55
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.41
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.4
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	85.21
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.14
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	85.05
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	84.92
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	84.37
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	84.31
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	84.29
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	82.44
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	82.42
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	82.34
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	82.18
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.97
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	81.71
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	81.57
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	80.77
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	80.47
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	80.17

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=2.9e-37  Score=262.96  Aligned_cols=215  Identities=68%  Similarity=1.086  Sum_probs=195.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|+||||||||+|+|+|+.++.++..+++|+.+..+....+|+.+++|||||+.++...++.....+..+....++|++|
T Consensus        38 vG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il  117 (257)
T d1h65a_          38 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL  117 (257)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred             ECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEE
Confidence            69999999999999999999999988899999999999999999999999999998888888888888777778899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCCCchhHhhhhccHHHHHHHHHhcccCccccccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYA  160 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  160 (256)
                      ||++++..|++..+...++.+.+.||+++|+++++|+||+|..++++.++++|+....+.+..+++.|...... .....
T Consensus       118 ~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~-~~~~~  196 (257)
T d1h65a_         118 YVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASD  196 (257)
T ss_dssp             EEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGC
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHhhhHHHHHHHHHHhhhhhh-hcccc
Confidence            99999988999999999999999999999999999999999987788899999998888899999888665442 23346


Q ss_pred             chHHHHhcCCCCCCCCcCcccCCCCCCchHHHHHHHHHhhhCCCCccccchhhccC
Q 025189          161 VPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDG  216 (256)
Q Consensus       161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~~i~~~~~~~~~~~~~~~~~~~  216 (256)
                      +|+.+++|.+.|+++...+++||++..|++.|+..+++.+.++.+++++++++++.
T Consensus       197 ~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i~~~~~~i~~  252 (257)
T d1h65a_         197 IPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDK  252 (257)
T ss_dssp             CCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHH
T ss_pred             CCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCccccHHHHhh
Confidence            88889999999999999999999999999999999999999999999999887764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.6e-21  Score=171.73  Aligned_cols=181  Identities=17%  Similarity=0.109  Sum_probs=110.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc----cCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTV----NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~----~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|++|||||||+|+|+|......    +....+|.....+.. .++.++++|||||++......+++++.+.    ...+
T Consensus        62 ~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~----~~~~  136 (400)
T d1tq4a_          62 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMK----FYEY  136 (400)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTT----GGGC
T ss_pred             ECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhh----hhcc
Confidence            59999999999999999643222    223345555554432 34556899999999988777777765543    2478


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC-CCchhHhhhhccHHHHHHHHHhcccCccc
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD-GLNYDVYCSKRSDALLKTIRLGAGLGKHE  155 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~-~~~~~~~~~~~~~~l~~~i~~~~~~~~~~  155 (256)
                      |++|++  .+. ++++.|.++++.+.+.-     +|+++|+||+|..... ........ ...+.+.++.+.|..... .
T Consensus       137 d~~l~~--~~~-~~~~~d~~l~~~l~~~~-----k~~~~V~nK~D~~~~~~~~~~~~~~-~~e~~l~~ir~~~~~~l~-~  206 (400)
T d1tq4a_         137 DFFIII--SAT-RFKKNDIDIAKAISMMK-----KEFYFVRTKVDSDITNEADGEPQTF-DKEKVLQDIRLNCVNTFR-E  206 (400)
T ss_dssp             SEEEEE--ESS-CCCHHHHHHHHHHHHTT-----CEEEEEECCHHHHHHHHHTTCCTTC-CHHHHHHHHHHHHHHHHH-H
T ss_pred             eEEEEe--cCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCcccccchhhhcccccc-cHHHHHHHHHHHHHHHHH-H
Confidence            999988  443 79999999999988763     8999999999852100 00000000 012233333333321111 0


Q ss_pred             cccCCchHHHHhcCCCCCCCCcCcccCCCCCCc-hHHHHHHHHHhhhCCCCccccc
Q 025189          156 FEDYAVPVALVENSGRCSKNENDEKILPNGNAW-IPTLVKGITDVATNKSKSIVVD  210 (256)
Q Consensus       156 ~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W-~~~L~~~~i~~~~~~~~~~~~~  210 (256)
                      ......|++++++.              +...| ++.|.+++.+.+|+++++.++.
T Consensus       207 ~~~~~~~vflvS~~--------------~~~~~d~~~L~~~l~~~L~~~~~~~~~~  248 (400)
T d1tq4a_         207 NGIAEPPIFLLSNK--------------NVCHYDFPVLMDKLISDLPIYKRHNFMV  248 (400)
T ss_dssp             TTCSSCCEEECCTT--------------CTTSTTHHHHHHHHHHHSCGGGHHHHHH
T ss_pred             cCCCCCCEEEecCC--------------cccccCHHHHHHHHHHHhHHHHHHHHHH
Confidence            00112333333221              11347 9999999999999998877664

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.4e-18  Score=138.13  Aligned_cols=117  Identities=21%  Similarity=0.273  Sum_probs=92.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH-HHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL-ELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~-~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|.+.+.++...++|...........+..+.++||||+.+......+.. +....++  ..+|++
T Consensus        11 vG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~--~~ad~i   88 (178)
T d1wf3a1          11 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVNAV   88 (178)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccc--ccccce
Confidence            6999999999999999998877788788888888888888999999999999987654443332 2233333  689999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      |||++++. .++..+..+.+.+++..++   +|+++|+||+|+.
T Consensus        89 l~v~D~~~-~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~  128 (178)
T d1wf3a1          89 VWVVDLRH-PPTPEDELVARALKPLVGK---VPILLVGNKLDAA  128 (178)
T ss_dssp             EEEEETTS-CCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGC
T ss_pred             eeeechhh-hhcccccchhhheeccccc---hhhhhhhcccccc
Confidence            99988765 5777887788877765443   7999999999984

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=2.8e-16  Score=124.63  Aligned_cols=113  Identities=19%  Similarity=0.178  Sum_probs=76.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHH----HHHhh--hcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALEL----IKGFL--LNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~----i~~~l--~~~   74 (256)
                      +|.+|||||||+|+|+|+++ .++..+++|.....+  ...  .+.++||||++..........+.    +..+.  ...
T Consensus         6 vG~~nvGKSsLin~l~~~~~-~~~~~~g~T~~~~~~--~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d2cxxa1           6 AGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   80 (184)
T ss_dssp             EEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             ECCCCCCHHHHHHHHhCCCc-eeeCCCCEeeccccc--ccc--cceecccCCceeccccccccccccchhhhhhhhhccc
Confidence            69999999999999999876 577777888775443  333  35789999997765444322222    22222  225


Q ss_pred             CCcEEEEEEeCCC----------CCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDA----------YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~----------~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+|++++|++...          ......+..+++.+.+.     .+|+++|+||+|+.
T Consensus        81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-----~~p~iiv~NK~D~~  134 (184)
T d2cxxa1          81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKI  134 (184)
T ss_dssp             GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-----CCCEEEEEeeeehh
Confidence            7899999965431          12345566666666554     27999999999974

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=5.7e-16  Score=120.31  Aligned_cols=118  Identities=20%  Similarity=0.195  Sum_probs=85.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH-HHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|+|.+.+.++..++++...........+..+.++||||+.+....... .......+.  ..+|++
T Consensus         7 vG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~--~~~d~~   84 (161)
T d2gj8a1           7 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI--EQADRV   84 (161)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH--HTCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHH--Hhcccc
Confidence            59999999999999999988777777777777777778889999999999999886533322 222222222  579999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++++..... ...+.+.+..+.+....+  +|+++|+||+|+.
T Consensus        85 i~~~d~~~~~-~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~  125 (161)
T d2gj8a1          85 LFMVDGTTTD-AVDPAEIWPEFIARLPAK--LPITVVRNKADIT  125 (161)
T ss_dssp             EEEEETTTCC-CCSHHHHCHHHHHHSCTT--CCEEEEEECHHHH
T ss_pred             ceeecccccc-chhhhhhhhhhhhhcccc--cceeeccchhhhh
Confidence            9998777533 334444444444444433  7999999999974

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=4.1e-15  Score=116.83  Aligned_cols=115  Identities=18%  Similarity=0.275  Sum_probs=77.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc--CcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY--VNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~--~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+|+|.....++...++|...........+..+.++||||+.+...  ............+  ..+|+
T Consensus         6 iG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~--~~ad~   83 (171)
T d1mkya1           6 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--READL   83 (171)
T ss_dssp             ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccc--ccCcE
Confidence            6999999999999999988777777777777777777788889999999999977542  2222333333333  58899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++...+. .+...+..+++.+.+..     +|+++|+||+|+.
T Consensus        84 i~~~~~~~~-~~~~~~~~~~~~l~~~~-----~pviiv~NK~Dl~  122 (171)
T d1mkya1          84 VLFVVDGKR-GITKEDESLADFLRKST-----VDTILVANKAENL  122 (171)
T ss_dssp             EEEEEETTT-CCCHHHHHHHHHHHHHT-----CCEEEEEESCCSH
T ss_pred             EEEeecccc-ccccccccccccccccc-----ccccccchhhhhh
Confidence            999977654 57778888887777653     7899999999973

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=2.8e-15  Score=119.12  Aligned_cols=112  Identities=21%  Similarity=0.301  Sum_probs=79.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc---------CcHHHHHHHHHhh
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---------VNYQALELIKGFL   71 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~---------~~~~~~~~i~~~l   71 (256)
                      +|.+|||||||+|+|+|.+.+.++....++..+......+++..+.++||||+.....         ........+    
T Consensus        14 iG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----   89 (186)
T d1mkya2          14 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI----   89 (186)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH----
T ss_pred             ECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHHHHH----
Confidence            6999999999999999998877888777777777777788999999999999865321         112333333    


Q ss_pred             hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           72 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        72 ~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                        ..+|++++|++.+. ........++..+....     .++++|+||+|+..
T Consensus        90 --~~~dvii~v~d~~~-~~~~~~~~~~~~~~~~~-----~~~i~v~nK~D~~~  134 (186)
T d1mkya2          90 --EKADVVVIVLDATQ-GITRQDQRMAGLMERRG-----RASVVVFNKWDLVV  134 (186)
T ss_dssp             --HHCSEEEEEEETTT-CCCHHHHHHHHHHHHTT-----CEEEEEEECGGGST
T ss_pred             --hcCCEEEEeecccc-cchhhHHHHHHHHHHcC-----Cceeeeccchhhhc
Confidence              36899999977764 46677777776666542     79999999999853

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=1e-15  Score=121.37  Aligned_cols=115  Identities=22%  Similarity=0.245  Sum_probs=72.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEE-EEeeeCCeEEEEEeCCCCCCCCcC----cHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM-VSRSKGGFTLNIIDTPGLVEAGYV----NYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~-~~~~~~g~~v~liDTPG~~~~~~~----~~~~~~~i~~~l~~~~   75 (256)
                      +|.+|||||||+|+|+|..... +...+.|..... ......+..+.+|||||+.+....    ...++..+      ..
T Consensus         7 vG~~nvGKSTLin~L~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~------~~   79 (180)
T d1udxa2           7 VGYPNAGKSSLLAAMTRAHPKI-APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI------AR   79 (180)
T ss_dssp             ECCGGGCHHHHHHHHCSSCCEE-CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH------TS
T ss_pred             ECCCCCCHHHHHHHHhCCCCce-eccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHH------Hh
Confidence            6999999999999999987643 333444444443 334456778999999998764322    22344333      58


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .++++++++... ..........+.+.........+|+++|+||+|+.
T Consensus        80 ~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~  126 (180)
T d1udxa2          80 TRVLLYVLDAAD-EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  126 (180)
T ss_dssp             SSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             hhhhhhhccccc-ccccchhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence            899999976653 22222223333333222222237999999999985

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=6.3e-15  Score=117.10  Aligned_cols=116  Identities=20%  Similarity=0.295  Sum_probs=73.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee-CCeEEEEEeCCCCCCCCc----CcHHHHHHHHHhhhcCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGY----VNYQALELIKGFLLNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~liDTPG~~~~~~----~~~~~~~~i~~~l~~~~   75 (256)
                      +|.+|||||||+|+|+|..+. ++...++|.........+ ++..+.+|||||+.+...    ....+++.+.      .
T Consensus         7 iG~~nvGKSSLin~L~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~------~   79 (185)
T d1lnza2           7 VGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE------R   79 (185)
T ss_dssp             ESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH------H
T ss_pred             ECCCCCCHHHHHHHHhCCCCc-eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH------H
Confidence            699999999999999998864 445555555555444444 577899999999854222    2234444443      5


Q ss_pred             CcEEEEEEeCCCCC-CCHHHHHH-HHHHHhhcCCc-ccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYR-VDDLDRQI-IKAVTGTFGKQ-IWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r-~~~~~~~~-~~~l~~~~g~~-~~~~~ivv~Tk~D~~  123 (256)
                      ++++++++...... ....+... .......+... ..+|+++|+||+|+.
T Consensus        80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~  130 (185)
T d1lnza2          80 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  130 (185)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchH
Confidence            67887776554322 33333222 22333333322 247899999999984

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=5.3e-15  Score=114.58  Aligned_cols=110  Identities=23%  Similarity=0.374  Sum_probs=82.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc--C----cHHHHHHHHHhhhcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY--V----NYQALELIKGFLLNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~--~----~~~~~~~i~~~l~~~   74 (256)
                      +|.+|||||||+|+|+|++.+.++..+++|...........+..+.++||||+.....  .    ...+++.+      .
T Consensus         6 iG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~------~   79 (160)
T d1xzpa2           6 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI------E   79 (160)
T ss_dssp             ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH------H
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHH------H
Confidence            6999999999999999998877888777887777777888999999999999865321  1    13344444      3


Q ss_pred             CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      .+|++++|++.+. .....+..+...+    .   ..++++++||.|..+
T Consensus        80 ~ad~ii~v~d~~~-~~~~~~~~~~~~~----~---~~~~i~~~~k~d~~~  121 (160)
T d1xzpa2          80 KADIVLFVLDASS-PLDEEDRKILERI----K---NKRYLVVINKVDVVE  121 (160)
T ss_dssp             HCSEEEEEEETTS-CCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred             hCCEEEEEEeCCC-Ccchhhhhhhhhc----c---cccceeeeeeccccc
Confidence            6899999988775 3555555554433    1   168999999999853

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.2e-13  Score=105.65  Aligned_cols=110  Identities=15%  Similarity=0.028  Sum_probs=64.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|.+.+.....   ..+++.........++|  ..+.+|||||..........++         .++|+
T Consensus         7 vG~~~vGKTsLi~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~---------~~~d~   74 (168)
T d2gjsa1           7 LGAPGVGKSALARIFGGVEDGP---EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCM---------AMGDA   74 (168)
T ss_dssp             ECCTTSSHHHHHHHHHTC------------CEEEEEEEEETTEEEEEEEEECC-------CHHHHH---------TSCSE
T ss_pred             ECCCCcCHHHHHHHHhCCccCC---cCCeeeeeecceeeccccccceeeeecccccccceecccch---------hhhhh
Confidence            6999999999999999875321   12222233333445555  4678999999765433322222         68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..++..+....+.. ..|+++|.||+|+.
T Consensus        75 ~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~  118 (168)
T d2gjsa1          75 YVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDLV  118 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCG
T ss_pred             hceeccccccccccccccccchhhcccccc-cceEEEeecccchh
Confidence            999999886332233345666666654422 36899999999985

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-13  Score=106.56  Aligned_cols=113  Identities=20%  Similarity=0.151  Sum_probs=72.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....++...........++.  .+.+|||+|..........   .+      ..+|+
T Consensus         8 iG~~~vGKTsLi~r~~~~~f--~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~---~~------~~a~~   76 (171)
T d2erxa1           8 FGAGGVGKSSLVLRFVKGTF--RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRL---SI------SKGHA   76 (171)
T ss_dssp             ECCTTSSHHHHHHHHHTCCC--CSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHH---HH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCccCcceeeccccceeeccccceeccccccccccccccccc---cc------cceeE
Confidence            69999999999999998753  233334434333444456664  5677999998654322211   22      37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++......-..++..+.+..+.....|+++|.||+|+..
T Consensus        77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  122 (171)
T d2erxa1          77 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  122 (171)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             EEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc
Confidence            9999998863222333455556665555433478999999999853

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=3.5e-13  Score=104.87  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=74.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++...  .....++ ............+  ..+.+|||+|..+.......+.         .++|
T Consensus         8 iG~~~vGKSsLi~rl~~~~~--~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~---------~~~~   76 (164)
T d1z2aa1           8 VGNGAVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYY---------RGAQ   76 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHCCC--CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHH---------TTCC
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhh---------ccCc
Confidence            69999999999999997542  2222222 2223333444454  4668999999887655544333         5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++++|+++++....+.-..+++.+.+..+.   .|+++|.||+|+..
T Consensus        77 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~  120 (164)
T d1z2aa1          77 ACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLD  120 (164)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGG
T ss_pred             eEEEEEeccchhhhhhcccccccccccCCC---ceEEEeeccCCccc
Confidence            999999988643223344566777666554   78999999999853

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.3e-13  Score=105.25  Aligned_cols=112  Identities=15%  Similarity=0.106  Sum_probs=73.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++.... ....+..+..........++.  .+.+|||||..+.......   .+      ..+|+
T Consensus        10 vG~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~---~~------~~~d~   79 (166)
T d1z0fa1          10 IGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS---YY------RGAAG   79 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHH---HH------HTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCCC-CcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHH---Hh------cCCcE
Confidence            699999999999999987532 222222333334445556665  6788999997544321111   12      48999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++......-..++..+.+.....  .++++|.||+|+.+
T Consensus        80 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~  123 (166)
T d1z0fa1          80 ALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEA  123 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             EEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchh
Confidence            999999986433333345566666665544  78999999999843

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.1e-13  Score=105.10  Aligned_cols=111  Identities=15%  Similarity=0.097  Sum_probs=75.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++....... .++.+..........++  ..+.+|||||..+.......+.         ..+|+
T Consensus        10 vG~~~vGKTsLi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~---------~~~~~   79 (175)
T d2f9la1          10 IGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYY---------RGAVG   79 (175)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHH---------TTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCcc-cccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHh---------hccCe
Confidence            699999999999999986532221 12222333334445555  4678999999766544443332         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+.+..+++  .|+++|.||+|+.
T Consensus        80 ~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~  122 (175)
T d2f9la1          80 ALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLR  122 (175)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred             EEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeeccc
Confidence            999988886433334456677777776665  6999999999985

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.42  E-value=1.9e-13  Score=106.25  Aligned_cols=108  Identities=20%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|.+.....    ...|..........++..+.+|||||...       +......+  ....|+++
T Consensus         8 vG~~~~GKTsLi~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~--~~~~~~~i   74 (165)
T d1ksha_           8 LGLDNAGKTTILKKFNGEDVDT----ISPTLGFNIKTLEHRGFKLNIWDVGGQKS-------LRSYWRNY--FESTDGLI   74 (165)
T ss_dssp             ECSTTSSHHHHHHHHTTCCCSS----CCCCSSEEEEEEEETTEEEEEEEECCSHH-------HHTTGGGG--CTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHcCCCCCc----ccceEeeeeeeccccccceeeeecCcchh-------hhhHHHhh--hhhhhcce
Confidence            6999999999999999876422    22344455566778899999999999532       11111112  26899999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++.+.. +.+....+.+.+......+  .|+++|+||+|+.
T Consensus        75 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~  116 (165)
T d1ksha_          75 WVVDSADRQRMQDCQRELQSLLVEERLAG--ATLLIFANKQDLP  116 (165)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTST
T ss_pred             eeeecccchhHHHHHHhhhhhhhhcccCC--CceEEEEeccccc
Confidence            998877632 2222222333333222233  7999999999984

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.42  E-value=6.9e-13  Score=104.96  Aligned_cols=108  Identities=10%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC------CcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS------EALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK   74 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~------~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~   74 (256)
                      +|.+++|||||+|+|++...........      .+...........+..+.++||||..       ++.+.+...+  .
T Consensus        11 iG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~-------~~~~~~~~~l--~   81 (179)
T d1wb1a4          11 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRAVVSAA--D   81 (179)
T ss_dssp             EECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHHHHHHT--T
T ss_pred             EeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccc-------ccccchhhhh--h
Confidence            6999999999999999865432222111      11112223345678889999999963       3334444433  5


Q ss_pred             CCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           75 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        75 ~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ..|++++|++... .....+...+..+... +    .|+++|+||+|+.
T Consensus        82 ~~d~~ilv~d~~~-g~~~~~~~~~~~~~~~-~----~p~iiv~NKiD~~  124 (179)
T d1wb1a4          82 IIDLALIVVDAKE-GPKTQTGEHMLILDHF-N----IPIIVVITKSDNA  124 (179)
T ss_dssp             SCCEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCBCEEEECTTSS
T ss_pred             hcccccccccccc-ccchhhhhhhhhhhhc-C----Ccceecccccccc
Confidence            7899999977765 3566667777666554 2    7899999999985

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=4.9e-13  Score=106.89  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHH---HHHHHHHhh-hcCC
Q 025189            1 MGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ---ALELIKGFL-LNKT   75 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~---~~~~i~~~l-~~~~   75 (256)
                      +|.+|||||||+|+|+|.. .+.++..+.+|........   ...+.++|++|.+........   ....+.... ....
T Consensus        29 vG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (195)
T d1svia_          29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREE  105 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc---cccceEEEEEeeccccccccccchhhhHHhhhhccccc
Confidence            6999999999999999975 3455555556555443332   234568999998775543321   112222222 2357


Q ss_pred             CcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           76 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        76 ~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .|++++|++.+. .++..+.++++.+.+.-     +|+++|+||+|+.
T Consensus       106 ~~~vi~viD~~~-~~~~~~~~~~~~l~~~~-----~piivv~NK~D~~  147 (195)
T d1svia_         106 LKAVVQIVDLRH-APSNDDVQMYEFLKYYG-----IPVIVIATKADKI  147 (195)
T ss_dssp             EEEEEEEEETTS-CCCHHHHHHHHHHHHTT-----CCEEEEEECGGGS
T ss_pred             hhhhhhhhhccc-ccccccccccccccccc-----Ccceechhhcccc
Confidence            899999976654 47888899998887653     7899999999985

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.6e-13  Score=107.51  Aligned_cols=111  Identities=12%  Similarity=0.100  Sum_probs=67.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+....... .+..+...........+  ..+.+|||||..+.       ......++  .++|+
T Consensus        11 vG~~~vGKTsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~-------~~~~~~~~--~~ad~   80 (169)
T d3raba_          11 IGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY-------RTITTAYY--RGAMG   80 (169)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSSC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTT--TTCCE
T ss_pred             ECCCCcCHHHHHHHHHcCCCCccc-ccccccceeeEEEEeecceEEEEEEECCCchhh-------HHHHHHHH--hcCCE
Confidence            699999999999999876532111 11222222333333443  57889999996421       11112222  68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+.......  .++++|.||+|+.
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~  123 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDME  123 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCSC--CEEEEEEECTTCG
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcccCCc--ceEEEEEeecccc
Confidence            999988876322222334444455544443  6889999999974

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=7e-13  Score=106.56  Aligned_cols=112  Identities=14%  Similarity=0.178  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|++++..     +.+|..........++..+.+|||||..........+   +....  ...+.++
T Consensus         9 vG~~n~GKTSLln~l~~~~~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~---~~~~~--~~~~~~i   78 (209)
T d1nrjb_           9 AGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDY---LKTRA--KFVKGLI   78 (209)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHH---HHHHG--GGEEEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCC-----CeEEecceEEEEEeCCeEEEEEecccccchhhHHHHH---HHHHh--hhccccc
Confidence            699999999999999998643     2344444555667788899999999986543222222   22111  3556777


Q ss_pred             EEEeCCC-CCCCHHHHHHH----HHHHhhcCCcccccEEEEEecccCCC
Q 025189           81 YADRLDA-YRVDDLDRQII----KAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        81 ~v~~~d~-~r~~~~~~~~~----~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++.... ....+.....+    ..+......+  .|+++|+||+|+..
T Consensus        79 ~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~piiiv~NK~D~~~  125 (209)
T d1nrjb_          79 FMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFT  125 (209)
T ss_dssp             EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTT
T ss_pred             eEEEEecccccHHHHHHHHHHHHHHHHHHHhcc--CCeEEEEEeecccc
Confidence            7655443 22233333333    2333444444  78999999999853

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.8e-13  Score=102.51  Aligned_cols=112  Identities=19%  Similarity=0.172  Sum_probs=74.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....++..........++|.  .+.+|||+|..........+.         ..+|+
T Consensus        10 iG~~~vGKTsLl~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~---------~~~d~   78 (167)
T d1xtqa1          10 LGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS---------IDING   78 (167)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGT---------SSCCE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccCcceecccceEEecCcEEEEeeecccccccccccccchhh---------hhhhh
Confidence            69999999999999987642  223233333223334456665  567899999887654333221         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+.-..++..+.+..+.. ..|+++|.||+|+..
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~  123 (167)
T d1xtqa1          79 YILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHM  123 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGG
T ss_pred             hhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeecccccccc
Confidence            999999986432233445666666665542 268999999999853

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-12  Score=102.92  Aligned_cols=111  Identities=22%  Similarity=0.219  Sum_probs=74.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....+++.........++|.  .+.+|||+|..+.......+.         ..+|+
T Consensus        12 vG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~---------~~~~~   80 (173)
T d2fn4a1          12 VGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM---------RAGHG   80 (173)
T ss_dssp             EECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHH---------HHCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccccccccceeeEeccCCeeeeeeccccccccccccccchhh---------cccee
Confidence            69999999999999997653  333344444444445566665  557799999987654443332         37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++......-..++..+.+..+.. ..|+++|.||+|+.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~  124 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLE  124 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSS-CCCEEEEEECGGGG
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccC-CCceEEEEEeechh
Confidence            999999886432233345555555544322 26899999999984

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.7e-13  Score=106.22  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+... .....+..+.........+++.  .+.+|||||....       ......++  .++|+
T Consensus        11 vG~~~vGKTsLi~~l~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~-------~~~~~~~~--~~~~~   80 (171)
T d2ew1a1          11 IGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYY--RSANA   80 (171)
T ss_dssp             EESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGS--TTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CCcccccccceEEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHHH--hccce
Confidence            69999999999999997653 2222333344444455566664  5678999995321       11112222  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+.+.....  .++++|.||+|+.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~ilvgnK~D~~  123 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLA  123 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred             EEEeeecccchhhhhhhhhhhhhccccccc--ccEEEEEeecccc
Confidence            999988876332233344555555554443  6899999999974

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1e-12  Score=102.07  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=72.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++... .....++.+..........++  ..+.+|||+|..........+.         ..+|+
T Consensus         6 vG~~~vGKTsLi~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~---------~~~~~   75 (164)
T d1yzqa1           6 LGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI---------RDSAA   75 (164)
T ss_dssp             EESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHH---------TTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHh---------hccce
Confidence            69999999999999998653 111112222233333344444  4678999999865433222222         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++......-..++..+.+..+.+  .++++|.||+|+.
T Consensus        76 ~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~--~~iilvgnK~Dl~  118 (164)
T d1yzqa1          76 AVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLA  118 (164)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCG
T ss_pred             EEEeeccccccchhhhHhhHHHHHHhcCCC--ceEEEEecccchh
Confidence            999998886432333455666666666554  7899999999985

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1e-12  Score=105.13  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|.+++...  .....++ +.........+++  ..+.+|||||..+.......+.         ..+|
T Consensus        12 vG~~~vGKTsli~~l~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~---------~~a~   80 (194)
T d2bcgy1          12 IGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY---------RGSH   80 (194)
T ss_dssp             EESTTSSHHHHHHHHHHCCC--CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGG---------TTCS
T ss_pred             ECCCCcCHHHHHHHHhhCCC--CCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHh---------ccCC
Confidence            69999999999999997652  1222221 1222223344444  4678899999876543322221         5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++++|+++++......-..+...+.+.....  .++++|.||+|+.+
T Consensus        81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~  125 (194)
T d2bcgy1          81 GIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKD  125 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTT
T ss_pred             EEEEEEeCcchhhhhhHhhhhhhhhhcccCC--ceEEEEEecccccc
Confidence            9999988875322233334445555554444  78999999999854

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.37  E-value=5.8e-13  Score=109.53  Aligned_cols=109  Identities=12%  Similarity=0.064  Sum_probs=73.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeE------------------EEEeeeCCeEEEEEeCCCCCCCCcCcHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV------------------MVSRSKGGFTLNIIDTPGLVEAGYVNYQ   62 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~------------------~~~~~~~g~~v~liDTPG~~~~~~~~~~   62 (256)
                      +|.+++|||||+|+|++...+... ..+.+....                  ......++..++++||||..+.......
T Consensus        11 iGh~d~GKSTL~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~   89 (227)
T d1g7sa4          11 LGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKR   89 (227)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCS
T ss_pred             EeCCCccHHHHHHHHHhhcchhee-cCceeeeccccccccccccccccccccceeecccccccccccccceecccccchh
Confidence            699999999999999986432211 111111100                  0112356778999999997664322111


Q ss_pred             HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                               ....+|++++|+++.. .+...+..+++.+...-     .|+++|+||+|+...
T Consensus        90 ---------~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~p~iivlNK~D~~~~  137 (227)
T d1g7sa4          90 ---------GGALADLAILIVDINE-GFKPQTQEALNILRMYR-----TPFVVAANKIDRIHG  137 (227)
T ss_dssp             ---------SSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSTT
T ss_pred             ---------cccccceEEEEEeccc-CcccchhHHHHHhhcCC-----CeEEEEEECccCCCc
Confidence                     1157999999977764 48888888888887753     799999999998643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.37  E-value=2.3e-12  Score=103.67  Aligned_cols=109  Identities=10%  Similarity=0.045  Sum_probs=73.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC------cc---------cccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGER------VV---------TVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE   65 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~------~~---------~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~   65 (256)
                      +|..++|||||+|+|++..      .+         ......+.|.........+.++.++++||||..       ++..
T Consensus         9 iGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~-------~f~~   81 (196)
T d1d2ea3           9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA-------DYVK   81 (196)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-------HHHH
T ss_pred             EeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH-------HHHH
Confidence            5889999999999998520      00         000111234444555667889999999999954       2333


Q ss_pred             HHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           66 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        66 ~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .+.+.+  ..+|++|+|++.+. -..+++++.+..+.... .   +++||++||+|+.
T Consensus        82 ~~~~~~--~~aD~allVVda~~-G~~~QT~~~~~~a~~~~-~---~~iIv~iNK~D~~  132 (196)
T d1d2ea3          82 NMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQIG-V---EHVVVYVNKADAV  132 (196)
T ss_dssp             HHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHHTT-C---CCEEEEEECGGGC
T ss_pred             HHHHHH--hhcCeEEEEEEcCC-CCchhHHHHHHHHHHhc-C---CcEEEEEeccccc
Confidence            443332  57899999977765 46677777776665542 2   6899999999985

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=2.4e-12  Score=100.69  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=75.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....++...........++  ..+.+|||+|..........+.         +++|+
T Consensus        10 vG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~---------~~~~~   78 (169)
T d1x1ra1          10 VGDGGVGKSALTIQFFQKIF--VPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYM---------RTGDG   78 (169)
T ss_dssp             ECCTTSSHHHHHHHHHHSSC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHH---------HHCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccCcceeeccccccccccccccccccccccccccccchhhhh---------hhccE
Confidence            69999999999999998653  22222332222233334454  4668999999876554433332         47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG  127 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~~  127 (256)
                      +++|+++++......-..++..+.+..+.. -.|+++|.||+|+.....
T Consensus        79 ~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~~~~  126 (169)
T d1x1ra1          79 FLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMHLRK  126 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCCEEEEEECTTCSTTCC
T ss_pred             EEEecccccchhhhccchhhHHHHhhcccc-CccEEEEecccchhhhce
Confidence            999999987433333455667776665432 268999999999854433

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.3e-12  Score=99.52  Aligned_cols=110  Identities=12%  Similarity=0.062  Sum_probs=72.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCccee-EEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP-VMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~-~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++.+....  ....++.... .......++  ..+.+|||+|..........+.         .++|
T Consensus        10 vG~~~vGKTsli~rl~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~---------~~~~   78 (167)
T d1z0ja1          10 LGDTGVGKSSIMWRFVEDSFD--PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYY---------RGSA   78 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC--TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHH---------TTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCCC--cccccccccccccccccccccccceeeeecCCchhhhHHHHHHH---------hhcc
Confidence            699999999999999987532  2222222222 222233333  3567999999876554444332         6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+.-..++..+.+....+  .++++|.||+|+.
T Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~  122 (167)
T d1z0ja1          79 AAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLT  122 (167)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCG
T ss_pred             ceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhc
Confidence            9999999886433344445555566665554  7999999999984

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=101.98  Aligned_cols=111  Identities=15%  Similarity=0.111  Sum_probs=74.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++........ +..+...........+  ..+.+|||+|..........+.         ..+|+
T Consensus         9 vG~~~vGKTsli~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~---------~~~d~   78 (173)
T d2a5ja1           9 IGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY---------RGAAG   78 (173)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH---------TTCSE
T ss_pred             ECCCCcCHHHHHHHHhcCCCCCCcc-cceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHh---------hccCE
Confidence            6999999999999999875322221 2222223333333443  5779999999887655444333         58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..++..+.+..+.+  .|+++|.||+|+.
T Consensus        79 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~  121 (173)
T d2a5ja1          79 ALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLE  121 (173)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCG
T ss_pred             EEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchh
Confidence            999999887433344456666677766665  6899999999974

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.34  E-value=2.1e-12  Score=100.33  Aligned_cols=109  Identities=13%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|.|.+....  ... ..|..........++..+.+|||||....       ......++  ..+|+++
T Consensus         8 ~G~~~~GKTsLl~~l~~~~~~--~~~-~~T~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~~~~~i   75 (164)
T d1zd9a1           8 VGLQYSGKTTFVNVIASGQFN--EDM-IPTVGFNMRKITKGNVTIKLWDIGGQPRF-------RSMWERYC--RGVSAIV   75 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC--CSC-CCCCSEEEEEEEETTEEEEEEEECCSHHH-------HTTHHHHH--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--Ccc-cccceeeeeeeeeeeEEEEEeeccccccc-------cccccccc--cccchhh
Confidence            699999999999999886532  222 23444445556788999999999995321       11122222  5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHh-hcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTG-TFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~-~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+.+ ....+  .|+++|+||.|+.
T Consensus        76 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~pi~lv~nK~Dl~  117 (164)
T d1zd9a1          76 YMVDAADQEKIEASKNELHNLLDKPQLQG--IPVLVLGNKRDLP  117 (164)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTT--CCEEEEEECTTST
T ss_pred             cccccccccccchhhhhhhhhhhhhcccC--CcEEEEEeccccc
Confidence            99988763322222333333322 22223  7899999999984

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.34  E-value=1.7e-12  Score=101.44  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  ...+.++..........+++.  .+.+|||+|..+......   ..+      .++|+
T Consensus        10 vG~~~vGKTsli~~~~~~~f--~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~---~~~------~~~~~   78 (168)
T d1u8za_          10 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRD---NYF------RSGEG   78 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHH---HHH------HHCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccCCccccccccccccccccccccccccccccchhhhhh---hcc------cccce
Confidence            69999999999999987652  233333333333334455654  667899999865421111   122      37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+++.+.+..+.. ..|+++|.||+|+.
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piiivgnK~Dl~  122 (168)
T d1u8za_          79 FLCVFSITEMESFAATADFREQILRVKEDE-NVPFLLVGNKSDLE  122 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCT-TSCEEEEEECGGGG
T ss_pred             eEEEeeccchhhhhhHHHHHHHHHHhhCCC-CCcEEEEecccccc
Confidence            999998886332233345666666554321 26899999999984

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.34  E-value=1.5e-12  Score=102.04  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|.+.....+..    +...........+..+.+||+||.....   ...    ..++  ..+|+++
T Consensus        22 vG~~~vGKSsLi~~l~~~~~~~~~~----~~~~~~~~i~~~~~~~~i~d~~g~~~~~---~~~----~~~~--~~~~~ii   88 (176)
T d1fzqa_          22 LGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKIR---PYW----RSYF--ENTDILI   88 (176)
T ss_dssp             EESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGGH---HHH----HHHH--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccee----eeeeeEEEeccCCeeEeEeeccccccch---hHH----HHHh--hccceeE
Confidence            6999999999999999986533322    1222334556778999999999975421   111    1122  6899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+...... ...|+++|.||+|+.
T Consensus        89 ~v~d~~d~~s~~~~~~~~~~~~~~~~~-~~~pillv~nK~Dl~  130 (176)
T d1fzqa_          89 YVIDSADRKRFEETGQELTELLEEEKL-SCVPVLIFANKQDLL  130 (176)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGG-TTCCEEEEEECTTST
T ss_pred             Eeeccccccchhhhhhhhhhhhhhhcc-CCCeEEEEEEecccc
Confidence            998887632222222333333222211 136899999999985

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.8e-12  Score=100.32  Aligned_cols=112  Identities=20%  Similarity=0.172  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  ...+.++..........+++.  .+.+|||+|..+.......   .+      ..+|+
T Consensus        11 vG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~---~~------~~~~~   79 (171)
T d2erya1          11 VGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQ---YM------RTGEG   79 (171)
T ss_dssp             EECTTSSHHHHHHHHHHSCC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHH---HH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcccCcccccceeeeeeecccccccccccccccccccccccc---cc------cccce
Confidence            69999999999999997652  233334444444455556664  6789999998765422221   22      37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+.-..++..+.+..+.. ..|+++|.||+|+..
T Consensus        80 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~  124 (171)
T d2erya1          80 FLLVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDH  124 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTT
T ss_pred             EEEeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhh
Confidence            999998886322223344554444444332 378999999999853

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=100.38  Aligned_cols=113  Identities=15%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-CcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++.... ...... ............+|.  .+.+|||||........       ..+.  ..+|
T Consensus        12 vG~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~-------~~~~--~~~d   81 (170)
T d2g6ba1          12 VGDSGVGKTCLLVRFKDGAFL-AGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT-------HAYY--RDAH   81 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC-CCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG--GGCS
T ss_pred             ECCCCcCHHHHHHHHHhCCCC-cccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHH-------HHhh--cCCc
Confidence            699999999999999876532 222222 222333334455664  67899999975432111       1111  4789


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      ++++|+++++..-.......+..+.+..+..  .++++|.||+|....
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~d~~~~  127 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHE  127 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSC
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhccCCC--ceEEEEEeeechhhc
Confidence            9999988875322222233444444544443  689999999998543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.9e-12  Score=99.37  Aligned_cols=111  Identities=14%  Similarity=0.056  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++++... .....++.............+  ..+.+|||||..........++         .++|+
T Consensus        12 vG~~~vGKTsLi~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~---------~~~~~   81 (170)
T d1r2qa_          12 LGESAVGKSSLVLRFVKGQF-HEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY---------RGAQA   81 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHH---------TTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHh---------hCcce
Confidence            69999999999999997653 112112222222223333443  4678999999865433322222         68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....+...+.+....+  .++++|.||+|+.
T Consensus        82 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~  124 (170)
T d1r2qa_          82 AIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLA  124 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred             EEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeeccccccc
Confidence            999988876433344455666676666655  7899999999984

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.8e-12  Score=102.94  Aligned_cols=109  Identities=19%  Similarity=0.265  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|+++....  ...+.++...........+|  ..+.+|||+|..........+.         .++|+
T Consensus        15 vG~~~vGKTsLi~r~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~---------~~a~~   83 (185)
T d2atxa1          15 VGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY---------PMTDV   83 (185)
T ss_dssp             EECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGC---------TTCSE
T ss_pred             ECCCCCCHHHHHHHHhhCCC--CCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcc---------cccce
Confidence            69999999999999987652  23333333333333344444  4678999999876543332222         58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+...+... ..+  .++++|.||+|+.
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~--~~~ilvgnK~Dl~  126 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY-APN--VPFLLIGTQIDLR  126 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STT--CCEEEEEECTTST
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc-CCC--CCeeEeeeccccc
Confidence            99999988633 222223344444444 443  7899999999985

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=99.98  Aligned_cols=111  Identities=16%  Similarity=0.109  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....++...........++  ..+.+|||+|..........   .+      .++|+
T Consensus         9 vG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~---~~------~~a~~   77 (167)
T d1kaoa_           9 LGSGGVGKSALTVQFVTGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL---YI------KNGQG   77 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHH---HH------HHCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHH---Hh------hcccc
Confidence            69999999999999998753  22333333333344445555  46678999997654322111   12      37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++......-..++..+...... ...|+++|.||+|+.
T Consensus        78 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~  121 (167)
T d1kaoa_          78 FILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLE  121 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGG
T ss_pred             eeeeeeecchhhhhhhhchhhhhhhhccC-CCCCEEEEEEccchh
Confidence            99999988643333334455555544332 126899999999985

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=7.5e-13  Score=103.92  Aligned_cols=114  Identities=12%  Similarity=0.150  Sum_probs=52.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+++|++... .....+..+..........++.  .+.+|||||..........       ++  .++|+
T Consensus        12 vG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~-------~~--~~~~~   81 (173)
T d2fu5c1          12 IGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA-------YY--RGAMG   81 (173)
T ss_dssp             ECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCT-------TT--TTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHH-------hc--cCCCE
Confidence            69999999999999998653 1111112223344445566664  5677999997543322111       11  68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD  126 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~~~  126 (256)
                      +++|+++++......-..+++.+......+  .++++|.||+|.....
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~~  127 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKR  127 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCC
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhhc
Confidence            999988876322223344455555555444  7899999999986433

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.31  E-value=1.4e-12  Score=103.00  Aligned_cols=109  Identities=12%  Similarity=0.027  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|.+.......    .|..........++..+.+|||||..........+.         ..+|+++
T Consensus        23 vG~~~vGKTsLi~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~---------~~~~~ii   89 (182)
T d1moza_          23 LGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYY---------ADTAAVI   89 (182)
T ss_dssp             EEETTSSHHHHHHHTCCSEEEEEC----SSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTT---------TTEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccc----cccceEEEEEeeCCEEEEEEecccccccchhHHhhh---------ccceeEE
Confidence            599999999999999887643222    223334455677899999999999876433322221         5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++.....+....+..+.+... ..-.|+++|.||+|+.
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~~~-~~~~piliv~NK~Dl~  131 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP  131 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred             EEeeecccccchhHHHHHHHHHHhhc-cCCcceEEEEEeeccc
Confidence            99888764322233333333222211 1127999999999984

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-12  Score=102.20  Aligned_cols=109  Identities=11%  Similarity=0.088  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++...  .....++. ..........+  ...+.+|||||..........+       +  .++|
T Consensus         9 vG~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~-------~--~~~~   77 (170)
T d1i2ma_           9 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY-------Y--IQAQ   77 (170)
T ss_dssp             EECTTSSHHHHHHTTC-------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGG-------T--TTCC
T ss_pred             ECCCCcCHHHHHHHHHhCCC--Ccccccceeccccccccccccccccccccccccccccceecchh-------c--cccc
Confidence            69999999999999998753  12222221 12222233334  4678999999965433222211       1  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+.-..++..+.+... +  .|+++|.||+|+.
T Consensus        78 ~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~  120 (170)
T d1i2ma_          78 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIK  120 (170)
T ss_dssp             EEEEEEETTSGGGGTTHHHHHHHHHHHHC-S--CCEEEEEECCCCS
T ss_pred             chhhccccccccccchhHHHHHHHhhccC-C--Cceeeecchhhhh
Confidence            99999999874433334556666665543 2  7999999999985

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=2.1e-12  Score=101.23  Aligned_cols=114  Identities=15%  Similarity=0.265  Sum_probs=75.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh--hcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--LNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d~   78 (256)
                      +|.+|||||||+|+|+|++.+.++....++..........+...+.++|+||.....  ............  ....+++
T Consensus        11 iG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   88 (179)
T d1egaa1          11 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASSSIGDVEL   88 (179)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTSCCCCEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhccccchhhcce
Confidence            599999999999999999887777666666666666677788888899999985321  111111111111  1245777


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++.+..  +.......+...+.+..     .+.++|+||+|..
T Consensus        89 ~l~~~d~~--~~~~~~~~~~~~l~~~~-----~~~i~v~~k~d~~  126 (179)
T d1egaa1          89 VIFVVEGT--RWTPDDEMVLNKLREGK-----APVILAVNKVDNV  126 (179)
T ss_dssp             EEEEEETT--CCCHHHHHHHHHHHSSS-----SCEEEEEESTTTC
T ss_pred             eEEEEecC--ccchhHHHHHHHhhhcc-----Cceeeeeeeeecc
Confidence            77775544  44455555555444332     6789999999874

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=3.7e-12  Score=103.02  Aligned_cols=109  Identities=10%  Similarity=0.044  Sum_probs=75.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCc----------ccccCC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERV----------VTVNSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL   64 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~----------~~~~~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~   64 (256)
                      +|..++|||||+|+|++...          +.....      .+.|........++++.+++++||||..+..       
T Consensus         9 iGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~-------   81 (204)
T d2c78a3           9 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI-------   81 (204)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH-------
T ss_pred             EeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH-------
Confidence            58999999999999974210          000111      1455566666788999999999999986531       


Q ss_pred             HHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           65 ELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        65 ~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      .++.+.+  ..+|++|+|++.+. -...++.+.+..+... |-   ++++|++||+|+.
T Consensus        82 ~~~~~~~--~~aD~avlVvda~~-Gv~~qt~~~~~~~~~~-gi---~~iiv~iNK~D~~  133 (204)
T d2c78a3          82 KNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-GV---PYIVVFMNKVDMV  133 (204)
T ss_dssp             HHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGC
T ss_pred             HHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEEecccC
Confidence            2222222  58999999988765 4777777777776665 21   4678889999985

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-12  Score=102.97  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++.+...  .....++...........++  ..+.+|||+|..........++         .++|+
T Consensus         8 vG~~~vGKTsLi~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~---------~~~~~   76 (177)
T d1kmqa_           8 VGDGACGKTCLLIVNSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY---------PDTDV   76 (177)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGC---------TTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCCcCCceeeeccccccccccceeeeccccCccchhcccchhhc---------ccchh
Confidence            69999999999999998753  22222332222233334444  4688999999865443322221         58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+...+.+. +.+  .|+++|.||+|+.
T Consensus        77 ~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~piilvgnK~Dl~  119 (177)
T d1kmqa_          77 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPN--VPIILVGNKKDLR  119 (177)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STT--SCEEEEEECGGGT
T ss_pred             hhhhcccchhHHHHHHHHHHHHHHHHh-CCC--CceEEeeeccccc
Confidence            99999988633 222233344444443 443  7899999999985

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.1e-12  Score=98.15  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+...  ...+.++...........++  ..+.+|||+|..... .   ....+      .++|+
T Consensus         8 vG~~~vGKTsli~r~~~~~f--~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~---~~~~~------~~~~~   75 (168)
T d2atva1           8 FGRAGVGKSALVVRFLTKRF--IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-Q---REGHM------RWGEG   75 (168)
T ss_dssp             ECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-H---HHHHH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCccCCceeccccccccccccceEEEEeecccccccc-c---chhhh------ccccc
Confidence            69999999999999998652  23333333322333334555  467899999986432 1   11122      37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++......-..+...+...... ...|+++|.||+|+.
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~  119 (168)
T d2atva1          76 FVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLD  119 (168)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGG
T ss_pred             ceeecccCCccchhhhhhhcccccccccc-cCcceeeeccchhhh
Confidence            99999988632112222333333333221 137999999999984

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.29  E-value=2.2e-12  Score=101.15  Aligned_cols=108  Identities=12%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++.+......    ..|..............+.+|||||.....    .   ....++  ..+|+++
T Consensus        18 vG~~~vGKTSli~rl~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~----~---~~~~~~--~~~~~ii   84 (173)
T d1e0sa_          18 LGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQDKIR----P---LWRHYY--TGTQGLI   84 (173)
T ss_dssp             EEETTSSHHHHHHHTTCCCCEEE----EEETTEEEEEEEETTEEEEEEEESCCGGGH----H---HHGGGT--TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCc----cceeeeeEEEeeccceeeEEecCCCcchhh----h---HHHhhh--cccceEE
Confidence            59999999999999997653221    123344455567788899999999975432    1   112222  6899999


Q ss_pred             EEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++.. +......+...+......  -.|+++|.||+|+.
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~--~~piiiv~NK~Dl~  126 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMR--DAIILIFANKQDLP  126 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTST
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccc--cceeeeeeeccccc
Confidence            998887532 222222222223222222  27999999999984

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.6e-12  Score=99.28  Aligned_cols=111  Identities=16%  Similarity=0.157  Sum_probs=66.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||++++.+...  .....++ ...........++  ..+.+|||+|..+.......       ++  .++|
T Consensus         9 vG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~-------~~--~~~~   77 (167)
T d1z08a1           9 LGEGCVGKTSLVLRYCENKF--NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI-------YY--RDSN   77 (167)
T ss_dssp             ECCTTSCHHHHHHHHHHCCC--CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CC-------SS--TTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccccccccchheeeeccCCccceeeeeccCCcceecccchh-------hc--cCCc
Confidence            69999999999999997653  2222222 2222223334444  57789999998654322111       11  5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ++++|+++++....+.-..+++.+.......  .++++|.||+|+..
T Consensus        78 ~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~  122 (167)
T d1z08a1          78 GAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEK  122 (167)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGG
T ss_pred             eeEEEEeCCchhHHHhhhhhhhhcccccccc--cceeeecccccccc
Confidence            9999999886332233344555555444333  67889999999853

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.7e-12  Score=100.59  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++.+.... ....+.............+  ...+.+|||||.....       .....+.  ..+|+
T Consensus        11 vG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~--~~~~~   80 (174)
T d2bmea1          11 IGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR-------SVTRSYY--RGAAG   80 (174)
T ss_dssp             EESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTS--TTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCCC-cccccccccceeeEEEEecCcceeEEEEECCCchhhh-------hhHHHHh--hhCCE
Confidence            699999999999999876532 1111122222222222233  3467899999964321       1122222  68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.........++..+....+.+  .|+++|.||+|+.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~  123 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLD  123 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEeccccc
Confidence            999988876432233345555666665555  7999999999974

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=5.1e-12  Score=98.93  Aligned_cols=112  Identities=11%  Similarity=0.081  Sum_probs=63.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-cceeEEEEeee---CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI   76 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~---~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (256)
                      +|.+|||||||+|++++....  ....++ +..........   ....+.+|||||..+.....       ..+.  ..+
T Consensus         8 vG~~~vGKSsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-------~~~~--~~~   76 (175)
T d1ky3a_           8 LGDSGVGKTSLMHRYVNDKYS--QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLG-------VAFY--RGA   76 (175)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC--TTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCS--TTC
T ss_pred             ECCCCcCHHHHHHHHHcCCCC--CccCcccccceeeeeeeecCcccccceeeccCCchhhhhHH-------HHHh--hcc
Confidence            699999999999999976532  111111 11112222222   23467899999975432111       1111  589


Q ss_pred             cEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189           77 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC  123 (256)
Q Consensus        77 d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~  123 (256)
                      |++++|+++++....+.-..+++.+.+..+..  -..|+++|+||+|+.
T Consensus        77 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~  125 (175)
T d1ky3a_          77 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  125 (175)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             ceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchh
Confidence            99999988876332233445666666554422  236899999999984

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=1.3e-11  Score=95.81  Aligned_cols=111  Identities=17%  Similarity=0.174  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++... .....++.+.........++|.  .+.+|||||..........+.         ..+|+
T Consensus         8 vG~~~vGKTSli~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~~~   77 (166)
T d1g16a_           8 IGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY---------RGAMG   77 (166)
T ss_dssp             EESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHH---------TTEEE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH---------hcCCE
Confidence            69999999999999998753 2221222333333344455554  566899999765543333332         68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.+..+.-......+.......  .+.+++.+|.|..
T Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~i~~~~k~d~~  120 (166)
T d1g16a_          78 IILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME  120 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred             EEEEEECCCccCHHHHHhhhhhhhccccCc--ceeeeecchhhhh
Confidence            999998886432222233444444444443  6788899999874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.1e-11  Score=95.79  Aligned_cols=112  Identities=14%  Similarity=0.044  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|..|||||||+|+|.+... .....+..+.........+++  ..+.+|||||..+.......+.         .++|+
T Consensus        13 vG~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~~~   82 (177)
T d1x3sa1          13 IGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY---------RGAQG   82 (177)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHH---------TTCCE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHH---------hcCCE
Confidence            69999999999999998653 122122222333333445554  4689999999866543332222         68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++......-..++..+.+. ......+++++.||.|..
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~  126 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKE  126 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSS
T ss_pred             EEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeeccccc
Confidence            99998887532222233344444332 223347888999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=5.7e-12  Score=99.54  Aligned_cols=110  Identities=17%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+++++....  ...+.++...........++  ..+.+|||+|..........+         ..++|+
T Consensus         8 iG~~~vGKTsli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~---------~~~~~~   76 (179)
T d1m7ba_           8 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLS---------YPDSDA   76 (179)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGG---------CTTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCccCCceeecccccccccceEEeeccccccccccccccccch---------hhhhhh
Confidence            69999999999999998653  22233333333333444444  466799999976543322211         158999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.....+.......+.+  .|+++|.||+|+.
T Consensus        77 ~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~  119 (179)
T d1m7ba_          77 VLICFDISRPETLDSVLKKWKGEIQEFCPN--TKMLLVGCKSDLR  119 (179)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTT--CEEEEEEECGGGG
T ss_pred             hheeeecccCCCHHHHHHHHHHHHhccCCc--ceEEEEEeccccc
Confidence            999999986331122222333333333444  7999999999974

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=7.5e-12  Score=98.94  Aligned_cols=112  Identities=14%  Similarity=0.070  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeee--CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~--~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++...  ...+.++. ..........  ....+.++||||..+.......+.         ..+|
T Consensus         8 vG~~~vGKSSLi~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~---------~~~~   76 (184)
T d1vg8a_           8 LGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY---------RGAD   76 (184)
T ss_dssp             ECCTTSSHHHHHHHHHHSCC--CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGG---------TTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccc---------cCcc
Confidence            69999999999999998653  22222221 1222222333  345778999999866543332221         5899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcc--cccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI--WRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~--~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++......-..+++.+........  ..|+++|+||+|+.
T Consensus        77 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~  124 (184)
T d1vg8a_          77 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  124 (184)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccc
Confidence            99999888753222233445555555443211  25899999999984

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.4e-12  Score=96.85  Aligned_cols=111  Identities=16%  Similarity=0.122  Sum_probs=72.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC--CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++++...  ...+.++...........+  ...+.+||++|..........+.         .++|+
T Consensus         9 vG~~~vGKTsli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~---------~~~~~   77 (167)
T d1c1ya_           9 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYM---------KNGQG   77 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHH---------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCccCCccccccceeEEeeeeEEEeccccccCcccccccccccc---------cccce
Confidence            69999999999999998753  2223333222222233333  45678999999876543332222         47899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+.-..+++.+.+..+.. ..|+++|.||+|+.
T Consensus        78 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~  121 (167)
T d1c1ya_          78 FALVYSITAQSTFNDLQDLREQILRVKDTE-DVPMILVGNKCDLE  121 (167)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCS-CCCEEEEEECTTCG
T ss_pred             eEEeeeccchhhhHhHHHHHHHHHHhcCCC-CCeEEEEEEecCcc
Confidence            999999986433344455666666554321 26899999999984

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=1.8e-11  Score=98.45  Aligned_cols=113  Identities=13%  Similarity=0.217  Sum_probs=64.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEe-eeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR-SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL   79 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~-~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~v   79 (256)
                      +|.+|||||||+|+|++......  .++.+........ ...+..+.+|||||....   .   ...+..+.  ..+|.+
T Consensus         6 vG~~~~GKTsLl~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~---~---~~~~~~~~--~~~~~~   75 (207)
T d2fh5b1           6 VGLCDSGKTLLFVRLLTGQYRDT--QTSITDSSAIYKVNNNRGNSLTLIDLPGHESL---R---FQLLDRFK--SSARAV   75 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCB--CCCCSCEEEEEECSSTTCCEEEEEECCCCHHH---H---HHHHHHHG--GGEEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCcc--cCCeeEEEEEEEEeeeeeeeeeeeeccccccc---c---chhhhhhh--hhcccc
Confidence            69999999999999998764332  2222222122222 235778999999996421   1   11222222  578999


Q ss_pred             EEEEeCCCCCC--CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           80 LYADRLDAYRV--DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        80 L~v~~~d~~r~--~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++|++..+...  .+....+.+.+.......-..|++||+||+|+.
T Consensus        76 i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~  121 (207)
T d2fh5b1          76 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA  121 (207)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred             ceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccC
Confidence            99977664211  111122223333322222226899999999985

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.6e-12  Score=99.03  Aligned_cols=109  Identities=21%  Similarity=0.268  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||++++.+...  .....++...........++.  .+.+|||+|..+.......++         ..+|+
T Consensus         9 lG~~~vGKTSli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~---------~~~~~   77 (191)
T d2ngra_           9 VGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY---------PQTDV   77 (191)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGC---------TTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcc---------cccce
Confidence            69999999999999997653  233333333333334444544  678999999875433322221         58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+.+.+.. ...+  .|+++|.||+|+.
T Consensus        78 ~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~--~~i~lvgnK~Dl~  120 (191)
T d2ngra_          78 FLVCFSVVSPSSFENVKEKWVPEITH-HCPK--TPFLLVGTQIDLR  120 (191)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHH-HCTT--CCEEEEEECGGGG
T ss_pred             eecccccchHHHHHHHHHHHHHHHhh-cCCC--CceEEEecccccc
Confidence            99999998633 22222223343433 3333  7899999999984

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-11  Score=96.07  Aligned_cols=111  Identities=20%  Similarity=0.211  Sum_probs=72.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....++............+  ..+.+||++|.........   ..+      ..+|+
T Consensus         9 iG~~~vGKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~------~~~~~   77 (166)
T d1ctqa_           9 VGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD---QYM------RTGEG   77 (166)
T ss_dssp             EESTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHH---HHH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCccCCccceeeccceeeeceeeeeeeeeccCccccccchh---hhh------hcccc
Confidence            69999999999999998652  22233333333333334444  3568999999865321111   112      37899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++....+....++..+.+..+.+ ..|+++|.||+|+.
T Consensus        78 ~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~  121 (166)
T d1ctqa_          78 FLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLA  121 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCS
T ss_pred             cceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccc
Confidence            999999887443444556777777665432 26899999999984

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=1.6e-11  Score=95.73  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||++++++....  ....++. ..........++  ..+.+|||+|..........++         .++|
T Consensus         9 vG~~~vGKTsLi~~~~~~~f~--~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~---------~~~~   77 (170)
T d1ek0a_           9 LGEAAVGKSSIVLRFVSNDFA--ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYY---------RNAQ   77 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC--TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHH---------TTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCCC--ccccccccceeeccccccccccccccccccCCchhHHHHHHHHH---------hccc
Confidence            699999999999999987632  2222222 122223344554  4789999999865432222221         6899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++|+++++....+....++..+.......  .+.++|.||+|+.
T Consensus        78 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~v~nk~d~~  121 (170)
T d1ek0a_          78 AALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDML  121 (170)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGG
T ss_pred             eEEEEEeCCcccchhhhhhhhhhhccccccc--cceeeeecccccc
Confidence            9999999886332333444444555544443  7899999999974

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-11  Score=98.07  Aligned_cols=109  Identities=18%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC--eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++...  .....++...........++  ..+.+||++|..........++         .++|+
T Consensus        11 iG~~~vGKTsli~~~~~~~f--~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~---------~~~~~   79 (183)
T d1mh1a_          11 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY---------PQTDV   79 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGC---------TTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcc---------cccce
Confidence            69999999999999998753  23333333333333334444  4568999999765433322221         58999


Q ss_pred             EEEEEeCCCCC-CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r-~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++|+++++.. +......+...+... ..+  .|+++|.||+|+.
T Consensus        80 ~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~--~piilvgnK~Dl~  122 (183)
T d1mh1a_          80 SLICFSLVSPASFENVRAKWYPEVRHH-CPN--TPIILVGTKLDLR  122 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STT--SCEEEEEECHHHH
T ss_pred             eeeeeccchHHHHHHHHHHHHHHHHHh-CCC--CcEEEEeecccch
Confidence            99999988633 222223344444443 333  6999999999974

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.5e-11  Score=94.98  Aligned_cols=115  Identities=15%  Similarity=0.046  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|.+.+......+..+++..........+++.  .+.+||+||...    .++++  ...++  ..+|+
T Consensus         9 vG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g----~e~~~--~~~~~--~~~~~   80 (172)
T d2g3ya1           9 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG----ENEWL--HDHCM--QVGDA   80 (172)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH----HHHHH--HHCCC--CCCSE
T ss_pred             ECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccc----ccccc--ccccc--cccce
Confidence            6999999999999999875432333333333333344455554  567899986421    12221  11122  68999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+.-..++..+....+. -..|+++|.||+|+..
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~  125 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVR  125 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGG-TTSCEEEEEECTTCGG
T ss_pred             eeeeecccccchhhhhhhhhhhhhhcccc-CCceEEEEeccccccc
Confidence            99999988632222233444445443321 1378999999999853

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=2.6e-11  Score=93.88  Aligned_cols=114  Identities=11%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee--eCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~--~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++........ +..+.........  .....+.++|++|........      ...++  .++|+
T Consensus         8 iG~~~vGKTsLl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~d~   78 (165)
T d1z06a1           8 IGDSNVGKTCLTYRFCAGRFPDRTE-ATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM------VQHYY--RNVHA   78 (165)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCSSCC-CCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT------HHHHH--TTCCE
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCccC-cccccccceeeeeeeccceEEEEEeccCchhhcccc------ceeee--cCCCc
Confidence            6999999999999999765322221 1111112222223  334567899999965322111      11112  58999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      +++|+++++....+.-..++..+.+..... ..|+++|.||+|+.+
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~pi~lvgnK~Dl~~  123 (165)
T d1z06a1          79 VVFVYDMTNMASFHSLPAWIEECKQHLLAN-DIPRILVGNKCDLRS  123 (165)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCS-CCCEEEEEECTTCGG
T ss_pred             eEEEEEeehhhhhhhhhhhhHHHHhhccCC-CCeEEEEeccccchh
Confidence            999999886432223345666666654322 268999999999853

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-10  Score=91.75  Aligned_cols=106  Identities=13%  Similarity=0.088  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (256)
                      +|.+|||||||+|++++....   ....++.........++|.  .+.+|||+|...     ..+   +      .++|+
T Consensus        11 lG~~~vGKTsLi~~~~~~~f~---~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~-----~~~---~------~~ad~   73 (175)
T d2bmja1          11 LGDARSGKSSLIHRFLTGSYQ---VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKF---S------GWADA   73 (175)
T ss_dssp             ECCTTTTHHHHHHHHHHSCCC---CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCC-----HHH---H------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCC---CcCCccceeEEEEeecCceEEEEEEeecccccc-----ccc---c------cccce
Confidence            699999999999999987642   2223333333344556674  578999999653     222   2      36899


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcc-cccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQI-WRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~-~~~~ivv~Tk~D~~  123 (256)
                      +|+|+++++....+.-..+.+.+........ ..|+++|.||.|+.
T Consensus        74 ~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d  119 (175)
T d2bmja1          74 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  119 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred             eEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence            9999999864322333445566655533221 24789999999863

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.16  E-value=3.4e-11  Score=91.95  Aligned_cols=109  Identities=10%  Similarity=0.056  Sum_probs=66.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|.+.+......  .  ..............+.++|+||.....    ......   .  ...++++
T Consensus         6 vG~~~vGKSsLi~~l~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~~~~~---~--~~~~~~i   72 (160)
T d1r8sa_           6 VGLDAAGKTTILYKLKLGEIVTTIP--T--IGFNVETVEYKNISFTVWDVGGQDKIR----PLWRHY---F--QNTQGLI   72 (160)
T ss_dssp             ECSTTSSHHHHHHHHHHHCSSCCCC--C--SSCCEEEEECSSCEEEEEECCCCGGGH----HHHHHH---T--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcccc--c--eeeEEEEEeeeeEEEEEecCCCcccch----hhhhhh---h--ccceeEE
Confidence            6999999999999999876422211  1  112233455677899999999986432    111111   1  5889999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++++..........+..+....+ ....++++|.||.|+.
T Consensus        73 ~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~k~d~~  114 (160)
T d1r8sa_          73 FVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLP  114 (160)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEEecChHHHHHHHHHHHHHHHhhc-ccCceEEEEeeccccc
Confidence            99888763221222222222222111 1237899999999874

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7e-12  Score=99.24  Aligned_cols=110  Identities=15%  Similarity=0.079  Sum_probs=62.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeee------------CCeEEEEEeCCCCCCCCcCcHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------GGFTLNIIDTPGLVEAGYVNYQALELIK   68 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------~g~~v~liDTPG~~~~~~~~~~~~~~i~   68 (256)
                      +|.+|||||||+|++++..... ...+..+.........+            ....+.+|||||..+       +.....
T Consensus        11 vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~-------~~~~~~   82 (186)
T d2f7sa1          11 LGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-------FRSLTT   82 (186)
T ss_dssp             ESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-------HHHHHH
T ss_pred             ECCCCcCHHHHHHHHhcCCCCC-ccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchh-------hHHHHH
Confidence            6999999999999999865311 11111111111111111            124678999999632       222222


Q ss_pred             HhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189           69 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        69 ~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~  123 (256)
                      .++  .++|++++|+++++.   .....+...+.+....  .-..++++|.||+|+.
T Consensus        83 ~~~--~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~  134 (186)
T d2f7sa1          83 AFF--RDAMGFLLMFDLTSQ---QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP  134 (186)
T ss_dssp             HHH--TTCCEEEEEEETTCH---HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred             HHH--hcCCEEEEEEecccc---ccceeeeeccchhhhhccCCCceEEEEeeeccch
Confidence            223  589999999888752   1222222333333221  1135789999999984

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=2.9e-10  Score=96.38  Aligned_cols=118  Identities=19%  Similarity=0.312  Sum_probs=67.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEE-ee----------------------------------------
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS-RS----------------------------------------   39 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~-~~----------------------------------------   39 (256)
                      +|..++|||||+|+|+|..+.+++.. .||..+.... ..                                        
T Consensus        32 vG~~SsGKSsliNaLlg~~~lP~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (299)
T d2akab1          32 VGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI  110 (299)
T ss_dssp             EEBTTSCHHHHHHHHHTSCCSCCCSS-CSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCC
T ss_pred             EcCCCCCHHHHHHHHhCCCcCCCCCC-ccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCCCcCc
Confidence            58999999999999999886555543 3333222111 00                                        


Q ss_pred             --------e---CCeEEEEEeCCCCCCCCcCc------HHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHH
Q 025189           40 --------K---GGFTLNIIDTPGLVEAGYVN------YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVT  102 (256)
Q Consensus        40 --------~---~g~~v~liDTPG~~~~~~~~------~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~  102 (256)
                              .   .-..++++||||+......+      ..+...+..++. ..-+++++|.+... .++..+  ....++
T Consensus       111 ~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~-~~~~~il~v~~a~~-~~~~~~--~~~~~~  186 (299)
T d2akab1         111 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSD--ALKIAK  186 (299)
T ss_dssp             CSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT-STTEEEEEEEESSS-CGGGCH--HHHHHH
T ss_pred             CCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhc-Cccceeeeeccccc-chhhhH--HHHHHH
Confidence                    0   11246899999998753221      223344444553 23345666655543 333332  222233


Q ss_pred             hhcCCcccccEEEEEecccCCCC
Q 025189          103 GTFGKQIWRKSLLVLTHAQLCPP  125 (256)
Q Consensus       103 ~~~g~~~~~~~ivv~Tk~D~~~~  125 (256)
                      +.-+..  .++++|+||+|..+.
T Consensus       187 ~~~~~~--~r~i~Vltk~D~~~~  207 (299)
T d2akab1         187 EVDPQG--QRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHCTTC--SSEEEEEECGGGSCT
T ss_pred             HhCcCC--CceeeEEeccccccc
Confidence            332222  789999999998643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.11  E-value=1.3e-10  Score=92.76  Aligned_cols=110  Identities=13%  Similarity=0.122  Sum_probs=64.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc--CCCCCcceeEEE-----------------------EeeeCCeEEEEEeCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVN--SFQSEALRPVMV-----------------------SRSKGGFTLNIIDTPGLVE   55 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~--~~~~~t~~~~~~-----------------------~~~~~g~~v~liDTPG~~~   55 (256)
                      +|..++|||||+|+|+|.......  ...+.|......                       .....+..++++||||.  
T Consensus        11 iGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh--   88 (195)
T d1kk1a3          11 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH--   88 (195)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSH--
T ss_pred             EeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeeccchh--
Confidence            588899999999999984321111  111111111100                       01122346899999994  


Q ss_pred             CCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           56 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                           ..+...+.+.+  ..+|++++|++...........+.+..+... +.   +++++++||+|+.
T Consensus        89 -----~~f~~~~~~~~--~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~---~~iiv~inK~D~~  145 (195)
T d1kk1a3          89 -----EALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELV  145 (195)
T ss_dssp             -----HHHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred             -----hhhhHHhhccc--ccccccccccchhhhhhhhhhHHHHHHHHHh-cC---ccceeeeecccch
Confidence                 24444444433  4689999998777643444445555544443 32   5688999999984

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.11  E-value=9.2e-10  Score=85.48  Aligned_cols=109  Identities=8%  Similarity=-0.000  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|+|.+.+..........    ........+..+.++|++|..........+.         ...|+++
T Consensus        21 vG~~~~GKSsLi~rl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~i   87 (177)
T d1zj6a1          21 VGLDNAGKTTILYQFSMNEVVHTSPTIGS----NVEEIVINNTRFLMWDIGGQESLRSSWNTYY---------TNTEFVI   87 (177)
T ss_dssp             EESTTSSHHHHHHHHHTTSCEEEECCSCS----SCEEEEETTEEEEEEECCC----CGGGHHHH---------TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccccccce----eEEEEeecceEEEEeccccccccccchhhhh---------ccceeee
Confidence            69999999999999999876544432222    2234456788999999999866544433322         5899999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++.++................. ....-.|+++|.||+|+.
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~  129 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVK  129 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTST
T ss_pred             eecccccccchhhhhhhhhhhhhc-ccccceEEEEEEEccccc
Confidence            998877533222222222222211 111237899999999984

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.6e-11  Score=91.85  Aligned_cols=112  Identities=18%  Similarity=0.131  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeEEEEeeeCCe--EEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g~--~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (256)
                      +|.+|||||||+|++++...  ......++ ..........++.  .+.+|||+|..+..    .   ....  ....+|
T Consensus        12 vG~~~vGKSSli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----~---~~~~--~~~~~~   80 (174)
T d1wmsa_          12 LGDGGVGKSSLMNRYVTNKF--DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR----S---LRTP--FYRGSD   80 (174)
T ss_dssp             ECCTTSSHHHHHHHHHHSCC--CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH----H---HHGG--GGTTCS
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCccccceeeeeeeeeeeecCceeeEeeecccCcceeh----h---hhhh--hhhccc
Confidence            69999999999999997653  22222222 2222333444554  55799999975421    1   1111  125899


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHhhcCCc--ccccEEEEEecccCC
Q 025189           78 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLC  123 (256)
Q Consensus        78 ~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~--~~~~~ivv~Tk~D~~  123 (256)
                      ++++|++++.....+....+++.+.+.....  --.|+++|.||+|+.
T Consensus        81 ~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~  128 (174)
T d1wmsa_          81 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  128 (174)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             eEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh
Confidence            9999988875332233445666665554321  126899999999984

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.09  E-value=3.7e-10  Score=96.15  Aligned_cols=74  Identities=14%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             EEEEEeCCCCCCCCcC------cHHHHHHHHHhhhcCCCcEE-EEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEE
Q 025189           44 TLNIIDTPGLVEAGYV------NYQALELIKGFLLNKTIDVL-LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV  116 (256)
Q Consensus        44 ~v~liDTPG~~~~~~~------~~~~~~~i~~~l~~~~~d~v-L~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv  116 (256)
                      .+++|||||+......      ...+...+..++.  .+|.+ ++|.+....-.......+++   +.-+..  .++++|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~~il~v~~~~~~~~~~~~~~~~~---~~~~~~--~r~i~V  204 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK--KQNAIIVAVTPANTDLANSDALQLAK---EVDPEG--KRTIGV  204 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHH--STTEEEEEEEESSSCSTTCSHHHHHH---HHCSSC--SSEEEE
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHh--CCCceeEEeecccccccccHHHHHHH---HhCcCC--CeEEEE
Confidence            4689999999874322      2234445555553  55654 44444443122233333443   332322  699999


Q ss_pred             EecccCCC
Q 025189          117 LTHAQLCP  124 (256)
Q Consensus       117 ~Tk~D~~~  124 (256)
                      +||+|..+
T Consensus       205 itk~D~~~  212 (306)
T d1jwyb_         205 ITKLDLMD  212 (306)
T ss_dssp             EECTTSSC
T ss_pred             Eecccccc
Confidence            99999863

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=8e-10  Score=83.99  Aligned_cols=109  Identities=12%  Similarity=0.123  Sum_probs=70.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|++|||||||+|+|.+...+.+.    +|...........+....++||+|..........+         ....++++
T Consensus         6 iG~~nvGKSSLln~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~   72 (166)
T d2qtvb1           6 LGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDY---------FPEVNGIV   72 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGG---------CTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCCeee----ceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhh---------hhheeeee
Confidence            699999999999999998754332    23334445566778889999999876543222211         15789999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++++.++..........+...... ......+++++.||.|+.
T Consensus        73 ~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~  114 (166)
T d2qtvb1          73 FLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAP  114 (166)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSS
T ss_pred             eeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEecccccc
Confidence            998777532222223333333222 223347899999999984

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1.1e-09  Score=85.34  Aligned_cols=117  Identities=20%  Similarity=0.228  Sum_probs=61.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHH-hh-hcCCCcE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG-FL-LNKTIDV   78 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~-~l-~~~~~d~   78 (256)
                      +|.+|||||||+|+|++.+....+...+++...........+......++++................. .. .....+.
T Consensus        22 vG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (188)
T d1puia_          22 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQG  101 (188)
T ss_dssp             EECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhhhhhhheeE
Confidence            699999999999999998765444444444444444455566655566666554443333222211111 11 1234455


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           79 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        79 vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ++.+..... .....+...+..+....     .+.++++||+|+.
T Consensus       102 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~v~~k~D~~  140 (188)
T d1puia_         102 LVVLMDIRH-PLKDLDQQMIEWAVDSN-----IAVLVLLTKADKL  140 (188)
T ss_dssp             EEEEEETTS-CCCHHHHHHHHHHHHTT-----CCEEEEEECGGGS
T ss_pred             EEEeecccc-cchhHHHHHHHHhhhcc-----ccccchhhhhhcc
Confidence            555555443 46666777777666653     7889999999985

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=5.5e-10  Score=93.85  Aligned_cols=108  Identities=12%  Similarity=0.128  Sum_probs=74.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-----------ccccCC------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERV-----------VTVNSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~-----------~~~~~~------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|..|+|||||+.+|+-...           ..+.++      .+.|..+.....++++.+++++||||..|........
T Consensus        12 ~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~   91 (276)
T d2bv3a2          12 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERS   91 (276)
T ss_dssp             EECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHH
T ss_pred             EeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHHHHHH
Confidence            58899999999999973210           011111      1223344456778999999999999999865333222


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                         +      .-+|..++|++..+ -.......+++...+.-     .|.++++||.|..
T Consensus        92 ---l------~~~D~avlVvda~~-Gv~~~T~~~w~~a~~~~-----lP~i~fINKmDr~  136 (276)
T d2bv3a2          92 ---M------RVLDGAIVVFDSSQ-GVEPQSETVWRQAEKYK-----VPRIAFANKMDKT  136 (276)
T ss_dssp             ---H------HHCCEEEEEEETTT-SSCHHHHHHHHHHHTTT-----CCEEEEEECTTST
T ss_pred             ---H------HhhhheEEeccccC-CcchhHHHHHHHHHHcC-----CCEEEEEeccccc
Confidence               2      35799999977665 46777778887777653     8999999999973

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.93  E-value=7.8e-10  Score=92.58  Aligned_cols=107  Identities=16%  Similarity=0.193  Sum_probs=74.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--c---c------cC------CCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVV--T---V------NS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA   63 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~--~---~------~~------~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~   63 (256)
                      +|..|+|||||+.+|+....+  .   +      .+      ..+.|........++++.+++++||||..|..  . +.
T Consensus         8 iGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~--~-e~   84 (267)
T d2dy1a2           8 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV--G-EI   84 (267)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH--H-HH
T ss_pred             EcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhh--h-hh
Confidence            588999999999999632110  0   0      01      01234455566788999999999999997642  2 22


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           64 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        64 ~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      ...+      .-+|..++|++... -........++...+.-     .|.++++||+|.
T Consensus        85 ~~al------~~~D~avlvvda~~-Gv~~~t~~~~~~~~~~~-----~p~~i~iNk~D~  131 (267)
T d2dy1a2          85 RGAL------EAADAALVAVSAEA-GVQVGTERAWTVAERLG-----LPRMVVVTKLDK  131 (267)
T ss_dssp             HHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHTT-----CCEEEEEECGGG
T ss_pred             hhhh------cccCceEEEeeccC-CccchhHHHHHhhhhcc-----cccccccccccc
Confidence            2233      36899999977664 46777788888777664     789999999996

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.92  E-value=3e-09  Score=81.27  Aligned_cols=109  Identities=12%  Similarity=0.059  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||+|++++.....+.    .|..........++..+.++|++|...........         ....|.++
T Consensus        11 vG~~~vGKSSLi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~   77 (169)
T d1upta_          11 LGLDGAGKTTILYRLQVGEVVTTI----PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCY---------YSNTDAVI   77 (169)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCCCC----CCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGG---------CTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCccee----cccceeeeeeccCceEEEEeeccccccccccchhh---------hhhhhhhh
Confidence            699999999999999998653221    23334445566788999999999986543222111         14788888


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +++.+.+..........+........ ....++++|.||.|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iv~nk~Dl~  119 (169)
T d1upta_          78 YVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDME  119 (169)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             hhhhhhhcchhhhccchhhhhhhhhc-cccceEEEEEeecccc
Confidence            88776643322223332222222211 1137889999999985

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.92  E-value=6e-10  Score=94.69  Aligned_cols=81  Identities=16%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeC-----------------CeEEEEEeCCCCCCCCcC----
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-----------------GFTLNIIDTPGLVEAGYV----   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-----------------g~~v~liDTPG~~~~~~~----   59 (256)
                      ||.++||||||+|+|++..++.+++++.||..+......+.                 ...+.++|.||+..+...    
T Consensus        16 vG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~~g~GL   95 (296)
T d1ni3a1          16 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL   95 (296)
T ss_dssp             EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred             ECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccccccccc
Confidence            69999999999999999877778899999988766555443                 246899999999886543    


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRLDA   87 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~d~   87 (256)
                      ..+.+..+      +.+|++++|++...
T Consensus        96 Gn~fL~~i------r~~d~lihVV~~f~  117 (296)
T d1ni3a1          96 GNAFLSHV------RAVDAIYQVVRAFD  117 (296)
T ss_dssp             CHHHHHHH------TTCSEEEEEEECCC
T ss_pred             HHHHHHHh------hccceeEEEEeccC
Confidence            35788777      48999999987754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.92  E-value=4.2e-09  Score=85.75  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc----------cc----------------------CCCCCcceeEEEEeeeCCeEEEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVT----------VN----------------------SFQSEALRPVMVSRSKGGFTLNII   48 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~----------~~----------------------~~~~~t~~~~~~~~~~~g~~v~li   48 (256)
                      +|..++|||||+++|+......          .+                      ...+.|...........++.++++
T Consensus        15 iGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ii   94 (222)
T d1zunb3          15 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA   94 (222)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccceEEEEE
Confidence            5889999999999997421100          00                      001122233344556788999999


Q ss_pred             eCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           49 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||||..+.       ...+...+  ..+|++++|++... .+..+..+.+..+.. +|-   +++++++||+|+.
T Consensus        95 D~PGH~df-------v~~~~~g~--~~aD~ailVvda~~-G~~~Qt~e~~~~~~~-~gv---~~iiv~vNK~D~~  155 (222)
T d1zunb3          95 DTPGHEQY-------TRNMATGA--STCDLAIILVDARY-GVQTQTRRHSYIASL-LGI---KHIVVAINKMDLN  155 (222)
T ss_dssp             ECCCSGGG-------HHHHHHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHH-TTC---CEEEEEEECTTTT
T ss_pred             eccchhhh-------hhhhcccc--ccCceEEEEecccc-CcccchHHHHHHHHH-cCC---CEEEEEEEccccc
Confidence            99998653       22222222  58999999987765 466666666654443 342   6799999999985

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.91  E-value=3e-10  Score=97.38  Aligned_cols=82  Identities=18%  Similarity=0.196  Sum_probs=39.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEee------------------------eCCeEEEEEeCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS------------------------KGGFTLNIIDTPGLVEA   56 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~------------------------~~g~~v~liDTPG~~~~   56 (256)
                      +|.++||||||+|+|+|.+. .+++++.||.++......                        ..+.++.++|+||+..+
T Consensus         6 vG~pn~GKStlfn~lt~~~~-~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGli~g   84 (319)
T d1wxqa1           6 VGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG   84 (319)
T ss_dssp             EECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred             ECCCCCCHHHHHHHHHCCCC-chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCcccc
Confidence            69999999999999999864 788898888765432211                        12246899999999875


Q ss_pred             CcCcHHHHHHHHHhhh-cCCCcEEEEEEeCC
Q 025189           57 GYVNYQALELIKGFLL-NKTIDVLLYADRLD   86 (256)
Q Consensus        57 ~~~~~~~~~~i~~~l~-~~~~d~vL~v~~~d   86 (256)
                      ......   .-.+++. ...+|++++|++..
T Consensus        85 a~~g~~---~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          85 AHEGRG---LGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------CCCSSTTCSEEEEEEETT
T ss_pred             hhcccc---hHHHHHHhhccceEEEEEeccc
Confidence            433221   1222332 26899999998765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=4.9e-10  Score=91.21  Aligned_cols=55  Identities=27%  Similarity=0.434  Sum_probs=37.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSF-------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY   58 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~   58 (256)
                      +|.||||||||+|+|+++....++..       ..||...+.+....+|   .|+||||+.+.+.
T Consensus       101 ~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~l  162 (225)
T d1u0la2         101 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLEI  162 (225)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCCC
T ss_pred             ECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccccccc
Confidence            59999999999999999755444432       2355555555554455   6999999987653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=1.2e-09  Score=86.53  Aligned_cols=108  Identities=10%  Similarity=0.116  Sum_probs=62.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++.+-    +. .... .|...........+..+.+|||+|..........+         ....++++
T Consensus         8 lG~~~vGKTsll~r~~----f~-~~~~-pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~---------~~~~~~~~   72 (200)
T d1zcba2           8 LGAGESGKSTFLKQMR----II-HGQD-PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFEC---------FDSVTSIL   72 (200)
T ss_dssp             ECSTTSSHHHHHHHHH----HH-HSCC-CCSSEEEEEEEETTEEEEEEEECC-------CTTS---------CTTCCEEE
T ss_pred             ECCCCCCHHHHHHHHh----cC-CCCC-CeeeeEEEEEeeeeeeeeeecccceeeeccccccc---------ccccceeE
Confidence            6999999999999992    11 1222 23344555677889999999999986433221111         15789999


Q ss_pred             EEEeCCCCCCC-------HHHHHHHHHHHhhcCC--cccccEEEEEecccCC
Q 025189           81 YADRLDAYRVD-------DLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~-------~~~~~~~~~l~~~~g~--~~~~~~ivv~Tk~D~~  123 (256)
                      ++++..+....       .........+.+....  ..-.|+++++||+|+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          73 FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             EEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            99887653211       1112223333332221  1127999999999974

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.82  E-value=3.5e-09  Score=82.15  Aligned_cols=108  Identities=14%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      ||.+|||||||+|+|.+........    +.........+++..+.++|++|............         ...+.++
T Consensus        19 vG~~~vGKTsLl~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~   85 (186)
T d1f6ba_          19 LGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYL---------PAINGIV   85 (186)
T ss_dssp             EEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC----CCGGGGGG---------GGCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcceec----ccccceeEEEecccccccccccchhhhhhHHhhhh---------cccceee
Confidence            6999999999999999987532222    11122234566788899999999877543332111         5789999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHh-hcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYRVDDLDRQIIKAVTG-TFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~~~~~~~~~~~l~~-~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|+++.+..........+..... ....  -.+++++.||.|+.
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~K~D~~  127 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKIDRP  127 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGT--TSCEEEEEECTTST
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccC--CCceEEEEeccCcc
Confidence            99877753322222222222221 1112  37999999999974

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.82  E-value=1.4e-08  Score=81.29  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=44.8

Q ss_pred             eEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccC
Q 025189           43 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        43 ~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      +.++++||||..       .+...+...+  ..+|++|+|++....-.....++.+..+.. +|.   ++++|++||+|+
T Consensus        86 r~~~iiD~PGH~-------df~~~~~~~~--~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i---~~iIV~vNK~Dl  152 (205)
T d2qn6a3          86 RRISFIDAPGHE-------VLMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGI-IGV---KNLIIVQNKVDV  152 (205)
T ss_dssp             EEEEEEECSCHH-------HHHHHHHHTS--SCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECGGG
T ss_pred             EEEEEeccchHH-------HHHhhhhcce--eccccccccccccccccchhHHHHHHHHHH-cCC---ceeeeccccCCC
Confidence            568999999974       3333443333  578999999776652124444555554444 343   588999999998


Q ss_pred             C
Q 025189          123 C  123 (256)
Q Consensus       123 ~  123 (256)
                      .
T Consensus       153 ~  153 (205)
T d2qn6a3         153 V  153 (205)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=1.3e-09  Score=91.48  Aligned_cols=64  Identities=22%  Similarity=0.298  Sum_probs=40.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELI   67 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i   67 (256)
                      +|.++||||||+|+|.|+..+.+++.+++|+..+..   ..+..+.++||||+.-+...+.+....+
T Consensus       118 vG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i---~~~~~~~l~DTPGi~~p~~~~~~~~~~l  181 (273)
T d1puja_         118 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV---KVGKELELLDTPGILWPKFEDELVGLRL  181 (273)
T ss_dssp             EESTTSSHHHHHHHHHTSCCC------------CCE---EETTTEEEEECCCCCCSCCCCHHHHHHH
T ss_pred             EecCccchhhhhhhhhccceEEECCcccccccceEE---ECCCCeEEecCCCccccCCccHHHHhhh
Confidence            699999999999999999999999998888765432   2345689999999988776665544333

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.80  E-value=1.2e-09  Score=91.85  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=56.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCC-----------------eEEEEEeCCCCCCCCcC----
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGYV----   59 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~liDTPG~~~~~~~----   59 (256)
                      ||.++||||||+|+|++..+ .+++++.||.++......+..                 -.+.++|.||+-.+.+.    
T Consensus         8 vG~Pn~GKSTlf~~lt~~~~-~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~g~Gl   86 (278)
T d1jala1           8 VGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL   86 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred             ECCCCCCHHHHHHHHHCCCC-ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcccCCCc
Confidence            69999999999999999865 678888888877665544332                 24789999999876432    


Q ss_pred             cHHHHHHHHHhhhcCCCcEEEEEEeC
Q 025189           60 NYQALELIKGFLLNKTIDVLLYADRL   85 (256)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~vL~v~~~   85 (256)
                      ..+.++.|+      ++|++++|++.
T Consensus        87 g~~FL~~ir------~~d~LihVVr~  106 (278)
T d1jala1          87 GNKFLANIR------ETDAIGHVVRC  106 (278)
T ss_dssp             TCCHHHHHH------TCSEEEEEEEC
T ss_pred             cHHHHHHHH------hccceEEEeec
Confidence            235777886      89999999876

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=5.3e-09  Score=82.04  Aligned_cols=103  Identities=15%  Similarity=0.185  Sum_probs=65.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      ||..|||||||++.+.....      ++.  .............+.+|||.|..........+.         .++++++
T Consensus         8 lG~~~vGKTsl~~r~~~~~~------~t~--~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~---------~~~~~~i   70 (195)
T d1svsa1           8 LGAGESGKSTIVKQMKIIHE------AGT--GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF---------EGVTAII   70 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHHHS------CCC--SEEEEEEEETTEEEEEEEECCSGGGGGGGGGGC---------TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhhCCC------CCc--cEEEEEEEeeeeeeeeeccccccccccchhhcc---------cCCceee
Confidence            69999999999999875432      111  123345567888999999999875433222221         6899999


Q ss_pred             EEEeCCCCC-CCH------HHHHHH----HHHHhhcCCcccccEEEEEecccC
Q 025189           81 YADRLDAYR-VDD------LDRQII----KAVTGTFGKQIWRKSLLVLTHAQL  122 (256)
Q Consensus        81 ~v~~~d~~r-~~~------~~~~~~----~~l~~~~g~~~~~~~ivv~Tk~D~  122 (256)
                      +|+++++.. +..      ......    ..+....+..  .++++++||+|+
T Consensus        71 ~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~--~~~~lv~Nk~d~  121 (195)
T d1svsa1          71 FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD--TSIILFLNKKDL  121 (195)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTT--SEEEEEEECHHH
T ss_pred             eEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCC--CCEEEEeccchh
Confidence            998876532 211      111222    2222222333  689999999985

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.74  E-value=5.3e-09  Score=84.89  Aligned_cols=107  Identities=13%  Similarity=0.179  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++.+.....      . .|.........+++..+.+||+.|..........+       .  .++++++
T Consensus        12 lG~~~vGKTsll~~~~~~~~------~-pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~-------~--~~~~~ii   75 (221)
T d1azta2          12 LGAGESGKSTIVKQMRILHV------V-LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC-------F--NDVTAII   75 (221)
T ss_dssp             ECSTTSSHHHHHHHHHHHHC------C-CCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGG-------C--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCc------C-CCCCeEEEEEEECcEEEEEEecCccceeccchhhh-------c--ccccceE
Confidence            69999999999999864321      1 12234445567889999999999986543222211       1  6899999


Q ss_pred             EEEeCCCCCC-------CHHHHHHHHHHHhhcCCcc--cccEEEEEecccCC
Q 025189           81 YADRLDAYRV-------DDLDRQIIKAVTGTFGKQI--WRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r~-------~~~~~~~~~~l~~~~g~~~--~~~~ivv~Tk~D~~  123 (256)
                      +|+.+++...       .....+.++.+..+.....  ..+++|++||+|+.
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~  127 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  127 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence            9988764210       1122334444445444321  36899999999984

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.69  E-value=1.3e-09  Score=89.03  Aligned_cols=54  Identities=28%  Similarity=0.431  Sum_probs=31.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCcceeEEEEeeeCCeEEEEEeCCCCCCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGY   58 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~   58 (256)
                      +|.||||||||+|+|+++....++...       .||.....+.  .+|-  .|+||||+.+...
T Consensus       103 ~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~~gg--~iiDTPG~r~~~l  163 (231)
T d1t9ha2         103 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TSGG--LVADTPGFSSLEF  163 (231)
T ss_dssp             EESHHHHHHHHHHHHCC-------------------CCCCCEEE--ETTE--EEESSCSCSSCCC
T ss_pred             ECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--cCCC--EEEECCccccccc
Confidence            599999999999999997544443321       2444444443  3443  6899999987653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=1.6e-08  Score=79.58  Aligned_cols=107  Identities=12%  Similarity=0.184  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEE
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLL   80 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL   80 (256)
                      +|.+|||||||++.+.....   ...  .|..............+.+|||.|..........+.         .++++++
T Consensus         8 lG~~~vGKTsll~r~~~~~~---~~~--pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~---------~~~~~~i   73 (200)
T d2bcjq2           8 LGTGESGKSTFIKQMRIIHG---SGV--PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCF---------ENVTSIM   73 (200)
T ss_dssp             EESTTSSHHHHHHHHHHHTS---SCC--CCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGC---------SSCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCC---CCC--ceeeEEEEEEeccceeeeeccccccccccccccccc---------cccceee
Confidence            69999999999999976542   111  223333445567788999999999865433322221         6889999


Q ss_pred             EEEeCCCCC-----------CCHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           81 YADRLDAYR-----------VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        81 ~v~~~d~~r-----------~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      +|++.++..           +.+.-..+...+......+  .++++|+||.|+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~--~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          74 FLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN--SSVILFLNKKDLL  125 (200)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSS--SEEEEEEECHHHH
T ss_pred             EeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccC--ccEEEecchhhhh
Confidence            998776521           0111122333333333233  7899999999873

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=1.7e-08  Score=82.97  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=65.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC---------------------ccc---c------cCCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGER---------------------VVT---V------NSFQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~---------------------~~~---~------~~~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|..++|||||+.+|+-..                     .+.   .      ....+.|.........+++++++++||
T Consensus        12 iGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~iiDt   91 (239)
T d1f60a3          12 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDA   91 (239)
T ss_dssp             EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEEC
T ss_pred             EeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEEEEEEC
Confidence            5788999999999986210                     000   0      001123444445567788999999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC------CHHHHHHHHHHHhhcCCcccccEEEEEecccCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC  123 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~  123 (256)
                      ||..|.       ..++..  ...-+|+.|+|++.....+      ..+..+.+. +.+.+|-   +++||++||+|+.
T Consensus        92 PGH~df-------~~~~~~--g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~~gv---~~iiv~iNKmD~~  157 (239)
T d1f60a3          92 PGHRDF-------IKNMIT--GTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFTLGV---RQLIVAVNKMDSV  157 (239)
T ss_dssp             CCCTTH-------HHHHHH--SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHHTTC---CEEEEEEECGGGG
T ss_pred             CCcHHH-------HHHHHH--HHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHHcCC---CeEEEEEECCCCC
Confidence            998753       222222  1257899999966543211      112222222 2233342   6789999999985

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.58  E-value=7.7e-08  Score=79.22  Aligned_cols=74  Identities=11%  Similarity=0.002  Sum_probs=41.3

Q ss_pred             EeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCC------CCHHHHHHHHHHHhhcCCccc
Q 025189           37 SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIW  110 (256)
Q Consensus        37 ~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r------~~~~~~~~~~~l~~~~g~~~~  110 (256)
                      ...+.+..+.++||||..+..       ..+.+.  ...+|.+++|++.+..-      ......+.+.. ...+|-   
T Consensus        96 ~~~~~~~~i~~iDtPGH~df~-------~~~~~g--~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l-~~~~~i---  162 (245)
T d1r5ba3          96 YFETEHRRFSLLDAPGHKGYV-------TNMING--ASQADIGVLVISARRGEFEAGFERGGQTREHAVL-ARTQGI---  162 (245)
T ss_dssp             EEECSSEEEEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH-HHHTTC---
T ss_pred             ccccccceeeeecccccccch-------hhhhhh--hhhhcceeeEEEcCCCccCCccccccchHHHHHH-HHHcCC---
Confidence            445678899999999987642       111111  14789999997776421      11122333322 233332   


Q ss_pred             ccEEEEEecccCC
Q 025189          111 RKSLLVLTHAQLC  123 (256)
Q Consensus       111 ~~~ivv~Tk~D~~  123 (256)
                      +++++++||+|+.
T Consensus       163 ~~iiv~iNKmD~~  175 (245)
T d1r5ba3         163 NHLVVVINKMDEP  175 (245)
T ss_dssp             SSEEEEEECTTST
T ss_pred             CeEEEEEEcCCCC
Confidence            5789999999985

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=1.1e-07  Score=81.92  Aligned_cols=67  Identities=19%  Similarity=0.282  Sum_probs=47.9

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      ++..++++||||..+..   .+....+      +-+|..|+|++... .+......+++...+.-     .|.++++||+
T Consensus        94 ~~~~inliDtPGh~dF~---~ev~~al------~~~D~allVVda~e-Gv~~qT~~~~~~a~~~~-----~p~i~viNKi  158 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFS---SEVTAAL------RVTDGALVVVDTIE-GVCVQTETVLRQALGER-----IKPVVVINKV  158 (341)
T ss_dssp             SEEEEEEECCCCCCSSC---HHHHHHH------HTCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CEEEEEEECH
T ss_pred             cceEEEEEcCCCcHHHH---HHHHHHH------hhcCceEEEEeccc-CcchhHHHHHHHHHHcC-----CCeEEEEECc
Confidence            34568999999998653   2333333      36899999977765 36677777776655443     7999999999


Q ss_pred             cC
Q 025189          121 QL  122 (256)
Q Consensus       121 D~  122 (256)
                      |.
T Consensus       159 Dr  160 (341)
T d1n0ua2         159 DR  160 (341)
T ss_dssp             HH
T ss_pred             cc
Confidence            86

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.55  E-value=9.6e-08  Score=77.45  Aligned_cols=111  Identities=15%  Similarity=0.201  Sum_probs=62.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCCcceeEEEEeeeCCeEEEEEeC
Q 025189            1 MGKGGVGKSSTVNSVIGERVV------------------------------TVNSFQSEALRPVMVSRSKGGFTLNIIDT   50 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~------------------------------~~~~~~~~t~~~~~~~~~~~g~~v~liDT   50 (256)
                      +|--++|||||+-+|+...-.                              ......+.|........+++++.++++||
T Consensus         9 iGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~iiDt   88 (224)
T d1jnya3           9 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDA   88 (224)
T ss_dssp             EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECCC
T ss_pred             EecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCceeEEeeC
Confidence            578899999999998632100                              00001122333334455778899999999


Q ss_pred             CCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCC------CHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           51 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~------~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ||..+.       ..++...+  .-+|+.|+|+++...-.      .....+.+. +.+.+|-   +++|+++||.|+..
T Consensus        89 PGH~df-------~~~~~~g~--~~~D~allVVda~~G~~~~t~~~~~qt~e~l~-~~~~~~~---~~iIv~iNK~D~~~  155 (224)
T d1jnya3          89 PGHRDF-------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHII-LAKTMGL---DQLIVAVNKMDLTE  155 (224)
T ss_dssp             SSSTTH-------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHH-HHHHTTC---TTCEEEEECGGGSS
T ss_pred             CCcHHH-------HHHHHHHH--HhhceEEEEEecccCcccccccccchhHHHHH-HHHHhCC---CceEEEEEcccCCC
Confidence            998653       22333222  57899999977764210      111111111 2233343   67899999999864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.16  E-value=3.5e-06  Score=67.26  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=47.3

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.+|||||...   .+...+++++++.....+|-+++|.+...   ..+....++.+.+.++     ..=+++||.
T Consensus        91 ~~~d~vlIDTaGr~~---~d~~~~~el~~~~~~~~~~~~llv~~a~~---~~~~~~~~~~f~~~~~-----~~~~I~TKl  159 (207)
T d1ls1a2          91 EARDLILVDTAGRLQ---IDEPLMGELARLKEVLGPDEVLLVLDAMT---GQEALSVARAFDEKVG-----VTGLVLTKL  159 (207)
T ss_dssp             HTCCEEEEECCCCSS---CCHHHHHHHHHHHHHHCCSEEEEEEEGGG---THHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred             ccCcceeecccccch---hhhhhHHHHHHHHhhcCCceEEEEecccc---chhHHHHHHHHHhhCC-----CCeeEEeec
Confidence            456789999999864   34445555555544457888889955442   3455556666655553     446889999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       160 De~  162 (207)
T d1ls1a2         160 DGD  162 (207)
T ss_dssp             GGC
T ss_pred             Ccc
Confidence            964

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.12  E-value=7.4e-07  Score=71.87  Aligned_cols=77  Identities=13%  Similarity=0.144  Sum_probs=38.2

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhh-cCCcccccEEEEEecc
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT-FGKQIWRKSLLVLTHA  120 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~-~g~~~~~~~ivv~Tk~  120 (256)
                      ...+.++||||..+......    ...........+.++++++..  ............+... .......+.++|+||+
T Consensus        94 ~~~~~~id~~g~~~~~~~~~----~~~~~~~~~~~~~~v~vvd~~--~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~  167 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHE----FGVRLMENLPYPLVVYISDPE--ILKKPNDYCFVRFFALLIDLRLGATTIPALNKV  167 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSH----HHHHHHHTSSSCEEEEEECGG--GCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCG
T ss_pred             ccceeeeccccchhHHHHHH----HHHHHHhhccCceEEEEeccc--cccCchhHhhHHHHHHHHHHHhCCCceeeeecc
Confidence            34579999999975321111    111222224677888884443  3222221111111110 0011126789999999


Q ss_pred             cCCC
Q 025189          121 QLCP  124 (256)
Q Consensus       121 D~~~  124 (256)
                      |+..
T Consensus       168 D~~~  171 (244)
T d1yrba1         168 DLLS  171 (244)
T ss_dssp             GGCC
T ss_pred             cccc
Confidence            9863

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.87  E-value=1.8e-06  Score=69.10  Aligned_cols=74  Identities=14%  Similarity=0.098  Sum_probs=42.1

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecc
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA  120 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~  120 (256)
                      .+..+.+|||||....+ .....+++++++...-.++-+++|++...   ..++........+.+     ...-+++||.
T Consensus        93 ~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~lI~TKl  163 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQAS-----KIGTIIITKM  163 (211)
T ss_dssp             TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHHC-----TTEEEEEECT
T ss_pred             cCCceEEEecCCcCccc-hhhHHHHHHHHHHhhcCCceEEEEEeccc---CcchHHHHhhhhccc-----CcceEEEecc
Confidence            55678999999984332 12223344444433336778888865553   223333333333333     3345779999


Q ss_pred             cCC
Q 025189          121 QLC  123 (256)
Q Consensus       121 D~~  123 (256)
                      |..
T Consensus       164 Det  166 (211)
T d1j8yf2         164 DGT  166 (211)
T ss_dssp             TSC
T ss_pred             cCC
Confidence            974

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=7e-06  Score=65.40  Aligned_cols=74  Identities=12%  Similarity=0.070  Sum_probs=41.3

Q ss_pred             CeEEEEEeCCCCCCCCcCcHHHHHHHHHhh---hcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEe
Q 025189           42 GFTLNIIDTPGLVEAGYVNYQALELIKGFL---LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT  118 (256)
Q Consensus        42 g~~v~liDTPG~~~~~~~~~~~~~~i~~~l---~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~T  118 (256)
                      +..+.+|||||....+....+-+..+.+..   ....++-+++|++...   ..++...+....+.+     ...-+++|
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~lI~T  159 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAV-----GLTGVIVT  159 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHH-----CCSEEEEE
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeeccc---CchHHHHHHHhhhcc-----CCceEEEe
Confidence            567899999998654322222222222222   1236788888855543   234443333333444     34577899


Q ss_pred             cccCC
Q 025189          119 HAQLC  123 (256)
Q Consensus       119 k~D~~  123 (256)
                      |.|..
T Consensus       160 KlDet  164 (207)
T d1okkd2         160 KLDGT  164 (207)
T ss_dssp             CTTSS
T ss_pred             ccCCC
Confidence            99975

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=5.2e-06  Score=66.30  Aligned_cols=72  Identities=13%  Similarity=0.071  Sum_probs=41.3

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHh---hh---cCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGF---LL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL  114 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~---l~---~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i  114 (256)
                      ++..+.+|||||...   .+...++++++.   +.   ...++-+++|++...   ...+........+..     ...-
T Consensus        90 ~~~d~ilIDTaGr~~---~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~  158 (211)
T d2qy9a2          90 RNIDVLIADTAGRLQ---NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAV-----GLTG  158 (211)
T ss_dssp             TTCSEEEECCCCCGG---GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGG---THHHHHHHHHHHHHS-----CCCE
T ss_pred             cCCCEEEeccCCCcc---ccHHHHHHHHHHHHHHhhhcccCcceeeeehhccc---CcchHHHHhhhhhcc-----CCce
Confidence            356789999999853   344444444443   21   123678888855442   233333333333333     3557


Q ss_pred             EEEecccCC
Q 025189          115 LVLTHAQLC  123 (256)
Q Consensus       115 vv~Tk~D~~  123 (256)
                      +++||.|..
T Consensus       159 lIlTKlDe~  167 (211)
T d2qy9a2         159 ITLTKLDGT  167 (211)
T ss_dssp             EEEECCTTC
T ss_pred             EEEeecCCC
Confidence            889999975

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=2.2e-06  Score=68.69  Aligned_cols=72  Identities=14%  Similarity=0.069  Sum_probs=40.7

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhh---hc---CCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEE
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFL---LN---KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL  114 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l---~~---~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~i  114 (256)
                      ++..+.+|||||....   +...+++++.+.   ..   ..++-+++|++...   ..++..-+....+.+     ...-
T Consensus        92 ~~~d~ilIDTaGr~~~---d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~  160 (213)
T d1vmaa2          92 RNKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---GQNGLVQAKIFKEAV-----NVTG  160 (213)
T ss_dssp             TTCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---HHHHHHHHHHHHHHS-----CCCE
T ss_pred             cCCCEEEEeccccccc---hHHHHHHHHHHHhhhhhccccccceeEEeecccc---Ccchhhhhhhhcccc-----CCce
Confidence            3667899999998543   344444444432   11   23678888855542   223322222222333     4557


Q ss_pred             EEEecccCC
Q 025189          115 LVLTHAQLC  123 (256)
Q Consensus       115 vv~Tk~D~~  123 (256)
                      +++||.|..
T Consensus       161 lI~TKlDe~  169 (213)
T d1vmaa2         161 IILTKLDGT  169 (213)
T ss_dssp             EEEECGGGC
T ss_pred             EEEecccCC
Confidence            889999975

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.66  E-value=4.8e-05  Score=64.47  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=35.7

Q ss_pred             CCeEEEEEeCCCCCCCCcCcHHHHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHH-HHHHhhcCCcccccEEEEEec
Q 025189           41 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQII-KAVTGTFGKQIWRKSLLVLTH  119 (256)
Q Consensus        41 ~g~~v~liDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~-~~l~~~~g~~~~~~~ivv~Tk  119 (256)
                      .|..+.+|.|.|.+...   ..+    .     ...|++++|.....    -.+.+.+ .-+.+       ..-++|+||
T Consensus       142 ~g~d~iiiETVG~gq~e---~~~----~-----~~~D~~v~v~~p~~----GD~iQ~~k~gilE-------~aDi~vvNK  198 (323)
T d2qm8a1         142 AGFDVILVETVGVGQSE---TAV----A-----DLTDFFLVLMLPGA----GDELQGIKKGIFE-------LADMIAVNK  198 (323)
T ss_dssp             TTCCEEEEEECSSSSCH---HHH----H-----TTSSEEEEEECSCC----------CCTTHHH-------HCSEEEEEC
T ss_pred             CCCCeEEEeehhhhhhh---hhh----h-----cccceEEEEeeccc----hhhhhhhhhhHhh-------hhheeeEec
Confidence            46788999999987542   111    1     47899999965543    2233322 22222       344999999


Q ss_pred             ccCC
Q 025189          120 AQLC  123 (256)
Q Consensus       120 ~D~~  123 (256)
                      +|+.
T Consensus       199 aD~~  202 (323)
T d2qm8a1         199 ADDG  202 (323)
T ss_dssp             CSTT
T ss_pred             cccc
Confidence            9974

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=2.8e-05  Score=66.12  Aligned_cols=16  Identities=31%  Similarity=0.457  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      .|.+|||||||+|+|.
T Consensus        60 tG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          60 TGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            3899999999999997

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=8.1e-05  Score=61.69  Aligned_cols=57  Identities=30%  Similarity=0.352  Sum_probs=40.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccC-CCCCcceeEEEEee---eCCeEEEEEeCCCCCCCC
Q 025189            1 MGKGGVGKSSTVNSVIGERV-VTVNS-FQSEALRPVMVSRS---KGGFTLNIIDTPGLVEAG   57 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~-~~~~~-~~~~t~~~~~~~~~---~~g~~v~liDTPG~~~~~   57 (256)
                      +|+.++|||+|+|.|+|... +.++. ..++|...-.....   ..+..+.++||.|+.+..
T Consensus        38 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          38 VGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             EEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            59999999999999999753 33333 34566655443332   246689999999998754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00041  Score=53.32  Aligned_cols=18  Identities=33%  Similarity=0.656  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+||+||+||++.|+.+
T Consensus         9 ~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           9 LGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.96  E-value=0.00091  Score=50.32  Aligned_cols=18  Identities=33%  Similarity=0.689  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|+|.
T Consensus         6 ~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           6 TGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHHhc
Confidence            599999999999999985

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0013  Score=53.09  Aligned_cols=19  Identities=26%  Similarity=0.392  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|+|--
T Consensus        35 vG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          35 VGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            6999999999999999963

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0013  Score=52.66  Aligned_cols=19  Identities=32%  Similarity=0.597  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|||||||++.|.|-.
T Consensus        32 iGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          32 VGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHhcCC
Confidence            6999999999999999953

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.86  E-value=0.0013  Score=52.54  Aligned_cols=19  Identities=37%  Similarity=0.466  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|||||||++.|.|-.
T Consensus        37 iG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          37 MGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCcchhhHhccCCC
Confidence            6999999999999999854

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.84  E-value=0.0014  Score=52.84  Aligned_cols=18  Identities=28%  Similarity=0.279  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|+|-
T Consensus        34 vG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          34 AGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            699999999999999995

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0015  Score=53.01  Aligned_cols=19  Identities=26%  Similarity=0.361  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|--
T Consensus        46 vG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          46 VGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhccc
Confidence            6999999999999999953

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.76  E-value=0.0016  Score=50.90  Aligned_cols=19  Identities=21%  Similarity=0.452  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|--
T Consensus        33 ~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          33 HGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCChHHHHHHHHhccc
Confidence            5999999999999999964

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0017  Score=51.86  Aligned_cols=19  Identities=32%  Similarity=0.587  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        31 iG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          31 VGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             BCCTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999953

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0016  Score=48.33  Aligned_cols=17  Identities=24%  Similarity=0.427  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|||||||+|.|..
T Consensus         8 tG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           8 AAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999999985

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.72  E-value=0.0014  Score=53.26  Aligned_cols=18  Identities=28%  Similarity=0.488  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++|+|||||++.|+|-
T Consensus        47 vG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          47 VGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EECTTSSHHHHHHHHTTT
T ss_pred             ECCCCChHHHHHHHHhcc
Confidence            699999999999999995

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.69  E-value=0.0017  Score=52.13  Aligned_cols=19  Identities=32%  Similarity=0.672  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        38 iGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          38 LGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            6999999999999999953

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.64  E-value=0.0018  Score=52.05  Aligned_cols=19  Identities=32%  Similarity=0.684  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||+|.|+|-.
T Consensus        38 iGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          38 IGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999964

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0006  Score=53.62  Aligned_cols=18  Identities=28%  Similarity=0.497  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+||||||||++.|+..
T Consensus         8 ~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           8 SAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999865

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.58  E-value=0.002  Score=51.83  Aligned_cols=19  Identities=32%  Similarity=0.672  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        35 iG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          35 LGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHhcCC
Confidence            6999999999999999964

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0018  Score=52.04  Aligned_cols=19  Identities=32%  Similarity=0.445  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|||||||++.|.|-.
T Consensus        37 iG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          37 IGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EESTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHcCCc
Confidence            5999999999999999964

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.49  E-value=0.0023  Score=51.42  Aligned_cols=19  Identities=32%  Similarity=0.492  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|||||||++.|.|-.
T Consensus        30 iGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          30 LGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            6999999999999999964

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.49  E-value=0.0015  Score=52.20  Aligned_cols=19  Identities=26%  Similarity=0.485  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|||||||++.|.|-.
T Consensus        32 iGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          32 LGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             ECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhcCc
Confidence            6999999999999999964

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.002  Score=53.08  Aligned_cols=19  Identities=37%  Similarity=0.601  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|+|.-
T Consensus        68 vG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          68 TGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EESTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHhCCC
Confidence            6999999999999999953

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.37  E-value=0.0018  Score=49.32  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||+++.|..+
T Consensus         8 ~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           8 SGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.37  E-value=0.0026  Score=51.02  Aligned_cols=20  Identities=25%  Similarity=0.410  Sum_probs=18.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      +|++|+|||||+|.|.|-..
T Consensus        34 vG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          34 IGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCCCHHHHHHHHhcCCC
Confidence            69999999999999999743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.29  E-value=0.0028  Score=51.33  Aligned_cols=19  Identities=37%  Similarity=0.625  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|+|-.
T Consensus        36 iG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          36 IGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHHCCC
Confidence            6999999999999999964

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.29  E-value=0.0029  Score=51.42  Aligned_cols=19  Identities=26%  Similarity=0.377  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        34 iG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          34 IGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHHcCc
Confidence            6999999999999999954

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.15  E-value=0.0022  Score=52.09  Aligned_cols=19  Identities=32%  Similarity=0.375  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|+|--
T Consensus        50 vG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          50 VGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECSTTSSHHHHHTTTTTSS
T ss_pred             ECCCCCcHHHHHHHHHhcC
Confidence            6999999999999999853

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.13  E-value=0.0028  Score=47.30  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+|||||||+++|...
T Consensus        13 ~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2          13 LGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             ECCTTSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.93  E-value=0.0021  Score=51.72  Aligned_cols=19  Identities=26%  Similarity=0.569  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      +|++|+|||||++.|.|-.
T Consensus        37 iG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          37 LGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             ECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHHcCc
Confidence            6999999999999999964

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.0013  Score=50.49  Aligned_cols=18  Identities=33%  Similarity=0.619  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+|||||+|+++.|+.+
T Consensus         7 ~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           7 SGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999865

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.80  E-value=0.0056  Score=44.45  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.+||||||+++.|...
T Consensus         8 ~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           8 IGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999998643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.65  E-value=0.0055  Score=45.60  Aligned_cols=17  Identities=18%  Similarity=0.349  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+|||||||++.|+.
T Consensus         7 ~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           7 VGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            59999999999999975

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=94.64  E-value=0.0053  Score=45.32  Aligned_cols=17  Identities=29%  Similarity=0.493  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        10 ~G~pGsGKTTia~~La~   26 (173)
T d1rkba_          10 TGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999954

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.29  E-value=0.0073  Score=46.22  Aligned_cols=17  Identities=18%  Similarity=0.235  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.++|..
T Consensus         8 ~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           8 VGLPARGKTYISKKLTR   24 (213)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999985

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.26  E-value=0.0085  Score=44.00  Aligned_cols=18  Identities=39%  Similarity=0.661  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.+||||||+++.|...
T Consensus         8 ~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           8 TGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.0083  Score=43.49  Aligned_cols=17  Identities=29%  Similarity=0.411  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+...|..
T Consensus         8 ~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           8 VGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.09  E-value=0.0083  Score=44.37  Aligned_cols=18  Identities=33%  Similarity=0.556  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.+||||||+.+.|...
T Consensus        11 ~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_          11 TGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.83  E-value=0.0094  Score=44.92  Aligned_cols=16  Identities=25%  Similarity=0.366  Sum_probs=14.6

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |.+||||||+.+.|..
T Consensus        29 G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          29 GLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             ECTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.74  E-value=0.0099  Score=43.95  Aligned_cols=18  Identities=28%  Similarity=0.435  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.+||||||+.+.|..+
T Consensus        10 ~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1          10 SGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EECTTSCHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.69  E-value=0.011  Score=43.67  Aligned_cols=17  Identities=18%  Similarity=0.173  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+...|..
T Consensus        12 ~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3          12 TGYMNSGKDAIARALQV   28 (183)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.0064  Score=45.72  Aligned_cols=16  Identities=38%  Similarity=0.684  Sum_probs=14.4

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|++|+||||++.+|.
T Consensus        30 ~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          30 SGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HSCCSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999974

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.014  Score=43.12  Aligned_cols=18  Identities=28%  Similarity=0.470  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||||+..+...
T Consensus         7 tG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           7 TGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999998853

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.45  E-value=0.018  Score=44.66  Aligned_cols=16  Identities=13%  Similarity=0.297  Sum_probs=13.7

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |++|+||||++..+..
T Consensus        31 Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          31 ALPGMGDDALIYALSR   46 (207)
T ss_dssp             CCTTSCHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            9999999999986554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.44  E-value=0.015  Score=43.17  Aligned_cols=17  Identities=24%  Similarity=0.476  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.+||||||+++.|..
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           7 TGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999998853

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.013  Score=43.23  Aligned_cols=18  Identities=39%  Similarity=0.601  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.+||||||+...|...
T Consensus        12 ~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_          12 MGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=93.40  E-value=0.015  Score=42.72  Aligned_cols=17  Identities=29%  Similarity=0.401  Sum_probs=15.3

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |.+||||||+.+.|...
T Consensus        10 G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_          10 GGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999998764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.034  Score=45.03  Aligned_cols=95  Identities=13%  Similarity=0.178  Sum_probs=45.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCc---HHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~---~~~~~~i~~~l~~~~~d   77 (256)
                      ||++|||||+++..|...-.  .+..+.          ...+..+.-+|+..+..+....   ++.++.+-..+. ...+
T Consensus        45 VG~~GvGKTalv~~la~ri~--~~~vp~----------~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~-~~~~  111 (268)
T d1r6bx2          45 VGESGVGKTAIAEGLAWRIV--QGDVPE----------VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE-QDTN  111 (268)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH--HTCSCG----------GGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS-SSSC
T ss_pred             ECCCCCcHHHHHHHHHHHHH--hCCccc----------ccccceeEEeeechHhccCccchhHHHHHHHHHHHhh-ccCC
Confidence            69999999999999876422  111111          1223344455555554432111   222222222221 3456


Q ss_pred             EEEEEEeCCC----CCCCHHHHHHHHHHHhhcCCc
Q 025189           78 VLLYADRLDA----YRVDDLDRQIIKAVTGTFGKQ  108 (256)
Q Consensus        78 ~vL~v~~~d~----~r~~~~~~~~~~~l~~~~g~~  108 (256)
                      ++||+..+..    .+-......+...|+..+..+
T Consensus       112 iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg  146 (268)
T d1r6bx2         112 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG  146 (268)
T ss_dssp             EEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC
T ss_pred             ceEEecchHHHhcCCCCCCccccHHHHhhHHHhCC
Confidence            7887743321    111223455666666666544

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.86  E-value=0.015  Score=48.45  Aligned_cols=18  Identities=28%  Similarity=0.501  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|.||+||||++|+|++.
T Consensus       172 ~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         172 CGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             EESTTSSHHHHHHHHGGG
T ss_pred             EeeccccchHHHHHHhhh
Confidence            389999999999999975

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.83  E-value=0.019  Score=43.25  Aligned_cols=17  Identities=29%  Similarity=0.448  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||++..++.
T Consensus        20 ~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          20 VGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             ECCTTSSHHHHHHHHTG
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.33  Score=38.52  Aligned_cols=18  Identities=33%  Similarity=0.649  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++++|..+
T Consensus        51 ~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          51 VGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             eCCCCCCccHHHHHHHHH
Confidence            399999999999999853

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.72  E-value=0.022  Score=43.97  Aligned_cols=74  Identities=24%  Similarity=0.352  Sum_probs=40.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCcCcHHHHHHHHHh---hhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF---LLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~~~~~~~~~i~~~---l~~~~~d   77 (256)
                      ||++|||||+++..|...-..  +..+.          ...+..+.-+|+..+..+.....++-+.++..   +....-+
T Consensus        49 vG~pGVGKTalv~~LA~ri~~--~~vp~----------~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~  116 (195)
T d1jbka_          49 IGEPGVGKTAIVEGLAQRIIN--GEVPE----------GLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGN  116 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHH--TCSCG----------GGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTT
T ss_pred             EecCCcccHHHHHHHHHHHHh--CCCCH----------HHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCc
Confidence            699999999999888764221  11111          13344556677666554432222222222222   2224568


Q ss_pred             EEEEEEeCC
Q 025189           78 VLLYADRLD   86 (256)
Q Consensus        78 ~vL~v~~~d   86 (256)
                      +|||+..+.
T Consensus       117 iILfIDeih  125 (195)
T d1jbka_         117 VILFIDELH  125 (195)
T ss_dssp             EEEEEETGG
T ss_pred             EEEEcchHH
Confidence            999995553

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.71  E-value=0.019  Score=42.52  Aligned_cols=17  Identities=29%  Similarity=0.388  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+...|..
T Consensus         7 iG~~G~GKSTig~~La~   23 (165)
T d2iyva1           7 VGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=92.56  E-value=0.02  Score=42.56  Aligned_cols=16  Identities=19%  Similarity=0.414  Sum_probs=14.4

Q ss_pred             CCCCCCCHHHHHHHHh
Q 025189            1 MGKGGVGKSSTVNSVI   16 (256)
Q Consensus         1 vG~tG~GKSSliN~l~   16 (256)
                      +|.+||||||+.+.|.
T Consensus         8 ~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           8 VGARGCGMTTVGRELA   23 (170)
T ss_dssp             ESCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998884

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.53  E-value=0.05  Score=43.90  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=32.6

Q ss_pred             HHHHHHHhhhcCCCcEEEEEEeCCCCCCCHHHHHHHHHHHhhcCCcccccEEEEEecccCCC
Q 025189           63 ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP  124 (256)
Q Consensus        63 ~~~~i~~~l~~~~~d~vL~v~~~d~~r~~~~~~~~~~~l~~~~g~~~~~~~ivv~Tk~D~~~  124 (256)
                      ..+.+.+.+  ..+|+||+|.+.-. .++..+..+.+.    +. +  +|.++|+||+|+.+
T Consensus         5 a~r~i~~~i--~~~DvIl~V~DaR~-P~ss~~~~l~~~----~~-~--Kp~IlVlNK~DLv~   56 (273)
T d1puja_           5 ARREVTEKL--KLIDIVYELVDARI-PMSSRNPMIEDI----LK-N--KPRIMLLNKADKAD   56 (273)
T ss_dssp             HHHHHHHHG--GGCSEEEEEEETTS-TTTTSCHHHHHH----CS-S--SCEEEEEECGGGSC
T ss_pred             HHHHHHHHH--HhCCEEEEEEECCC-CCCCCCHHHHHH----Hc-C--CCeEEEEECccCCc
Confidence            344555544  58999999955432 244444433332    22 2  89999999999974

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.48  E-value=0.022  Score=43.45  Aligned_cols=18  Identities=33%  Similarity=0.593  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||+++.|+..
T Consensus         6 ~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           6 SGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.025  Score=43.58  Aligned_cols=16  Identities=31%  Similarity=0.482  Sum_probs=14.4

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |.+||||||+.+.|..
T Consensus         9 G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           9 GGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998854

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.37  E-value=0.28  Score=37.94  Aligned_cols=17  Identities=24%  Similarity=0.524  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|++|+||||++.++..
T Consensus        39 ~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          39 YGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             ECSTTSSHHHHHHTHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999987764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.011  Score=44.58  Aligned_cols=17  Identities=24%  Similarity=0.394  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+.+.|..
T Consensus        25 ~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          25 TGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             ESSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.20  E-value=0.024  Score=41.86  Aligned_cols=17  Identities=29%  Similarity=0.423  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|.+||||||+...|..
T Consensus         6 iG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           6 IGFMGSGKSTLARALAK   22 (161)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.07  E-value=0.024  Score=42.14  Aligned_cols=16  Identities=44%  Similarity=0.594  Sum_probs=14.4

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |.+||||||+++.|..
T Consensus         8 G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           8 GIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             ECTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999999853

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.91  E-value=0.027  Score=41.93  Aligned_cols=17  Identities=29%  Similarity=0.655  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++||||||++..|..
T Consensus         6 ~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           6 MGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998843

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.74  E-value=0.024  Score=42.88  Aligned_cols=17  Identities=18%  Similarity=0.259  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++||||||++..|..
T Consensus         9 ~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           9 SGAPASGKGTQCELIKT   25 (189)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.70  E-value=0.024  Score=42.93  Aligned_cols=17  Identities=24%  Similarity=0.585  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++||||||++..|..
T Consensus        12 ~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_          12 LGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988865

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=91.28  E-value=0.032  Score=43.68  Aligned_cols=17  Identities=29%  Similarity=0.571  Sum_probs=15.4

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+||||+++++.++
T Consensus        42 GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          42 GPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.25  E-value=0.031  Score=42.28  Aligned_cols=17  Identities=29%  Similarity=0.362  Sum_probs=15.0

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |..||||||+++.|...
T Consensus        16 G~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          16 GNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CSTTSCHHHHHHTTGGG
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            89999999999998653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=91.04  E-value=0.038  Score=41.39  Aligned_cols=18  Identities=28%  Similarity=0.636  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||++..|...
T Consensus         6 ~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           6 MGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999888753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.88  E-value=0.041  Score=41.11  Aligned_cols=17  Identities=24%  Similarity=0.468  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++||||||+...|..
T Consensus         6 ~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           6 LGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=90.86  E-value=0.041  Score=41.46  Aligned_cols=17  Identities=24%  Similarity=0.487  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++||||||+...|..
T Consensus         9 ~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           9 LGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.79  E-value=0.031  Score=44.20  Aligned_cols=18  Identities=33%  Similarity=0.514  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+||||++.+|.++
T Consensus        38 ~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          38 GGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             ECCTTSCTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999774

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=90.52  E-value=0.05  Score=42.41  Aligned_cols=17  Identities=29%  Similarity=0.591  Sum_probs=15.3

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+||||+.+.|..+
T Consensus        42 GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          42 GPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             SSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHhc
Confidence            99999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.43  E-value=0.055  Score=42.70  Aligned_cols=18  Identities=22%  Similarity=0.560  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++++++..
T Consensus        52 ~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          52 IGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             TTCCSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.24  E-value=0.053  Score=46.39  Aligned_cols=18  Identities=39%  Similarity=0.547  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|+||+||||++.+++.+
T Consensus       164 tGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         164 TGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCccHHHHHHhhh
Confidence            399999999999999875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.14  E-value=0.051  Score=41.09  Aligned_cols=18  Identities=22%  Similarity=0.604  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||+...|...
T Consensus        14 ~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_          14 LGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.04  E-value=0.067  Score=45.54  Aligned_cols=74  Identities=19%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCcceeEEEEeeeCCeEEEEEeCCCCCCCCc---CcHHHHHHHHHhhhcCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLNKTID   77 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~v~liDTPG~~~~~~---~~~~~~~~i~~~l~~~~~d   77 (256)
                      ||++|||||+++..|...-+  .+..+..          ..+..+.-+|.-.+..+..   .-++.+..+...+.....+
T Consensus        49 vG~~GvGKtaiv~~la~~i~--~~~vp~~----------l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~  116 (387)
T d1qvra2          49 IGEPGVGKTAIVEGLAQRIV--KGDVPEG----------LKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGE  116 (387)
T ss_dssp             EECTTSCHHHHHHHHHHHHH--HTCSCTT----------STTCEEEEECC-----------CHHHHHHHHHHHHHTTCSS
T ss_pred             ECCCCCCHHHHHHHHHHHHH--hCCCCHH----------HcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCc
Confidence            69999999999988775421  1222221          2233444555555544321   1122222332222234457


Q ss_pred             EEEEEEeCC
Q 025189           78 VLLYADRLD   86 (256)
Q Consensus        78 ~vL~v~~~d   86 (256)
                      +|||+..+.
T Consensus       117 ~ilfide~h  125 (387)
T d1qvra2         117 VILFIDELH  125 (387)
T ss_dssp             EEEEECCC-
T ss_pred             eEEEeccHH
Confidence            888884443

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.98  E-value=0.044  Score=41.49  Aligned_cols=18  Identities=22%  Similarity=0.560  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||++..|...
T Consensus        14 ~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          14 VGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=89.71  E-value=0.065  Score=41.44  Aligned_cols=17  Identities=24%  Similarity=0.233  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|.||+||||+.+.|..
T Consensus        30 tGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          30 TGLSASGKSTLAVELEH   46 (208)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999874

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.68  E-value=0.067  Score=41.90  Aligned_cols=17  Identities=29%  Similarity=0.614  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|++|+|||++++.+..
T Consensus        49 ~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          49 LGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.63  E-value=0.059  Score=40.52  Aligned_cols=17  Identities=24%  Similarity=0.589  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++||||||....|..
T Consensus         7 ~GppGSGKsT~a~~La~   23 (194)
T d1teva_           7 LGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.62  E-value=0.037  Score=44.83  Aligned_cols=15  Identities=33%  Similarity=0.787  Sum_probs=14.0

Q ss_pred             CCCCCCCHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSV   15 (256)
Q Consensus         1 vG~tG~GKSSliN~l   15 (256)
                      +|+.|+||||++.||
T Consensus        30 vG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          30 VGPNGSGKSNIIDAI   44 (308)
T ss_dssp             ECCTTTCSTHHHHHH
T ss_pred             ECCCCCcHHHHHHHH
Confidence            599999999999887

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=0.048  Score=40.60  Aligned_cols=17  Identities=18%  Similarity=0.368  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++||||||....|..
T Consensus         6 ~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.56  E-value=0.068  Score=41.42  Aligned_cols=17  Identities=35%  Similarity=0.581  Sum_probs=15.4

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+||||++.++..+
T Consensus        52 Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          52 GPPGVGKTTAALALARE   68 (231)
T ss_dssp             SCTTSSHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHH
Confidence            99999999999988764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.54  E-value=0.056  Score=45.44  Aligned_cols=15  Identities=33%  Similarity=0.773  Sum_probs=14.1

Q ss_pred             CCCCCCCHHHHHHHH
Q 025189            1 MGKGGVGKSSTVNSV   15 (256)
Q Consensus         1 vG~tG~GKSSliN~l   15 (256)
                      +|++|+||||++.||
T Consensus        31 ~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          31 IGPNGSGKSNMMDAI   45 (427)
T ss_dssp             ECSTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999997

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.27  E-value=0.073  Score=41.65  Aligned_cols=17  Identities=35%  Similarity=0.626  Sum_probs=15.7

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+||||++.+|..+
T Consensus        59 GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          59 GPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.04  E-value=0.079  Score=40.97  Aligned_cols=17  Identities=41%  Similarity=0.626  Sum_probs=15.2

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+||||++..+..+
T Consensus        40 Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          40 GPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHH
Confidence            99999999999988754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.99  E-value=0.071  Score=39.77  Aligned_cols=17  Identities=24%  Similarity=0.481  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|++||||||+...|..
T Consensus         8 ~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           8 IGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998865

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=88.75  E-value=0.073  Score=43.69  Aligned_cols=18  Identities=28%  Similarity=0.475  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|+||||||.|.++|...
T Consensus        55 ~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          55 IGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhhc
Confidence            499999999999999863

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=88.64  E-value=0.077  Score=40.16  Aligned_cols=18  Identities=28%  Similarity=0.514  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|++||||||+...|..+
T Consensus        12 iG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1          12 MGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.36  E-value=0.076  Score=41.58  Aligned_cols=17  Identities=35%  Similarity=0.435  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|++|+|||||++.++.
T Consensus        35 ~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          35 LGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHHH
Confidence            39999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.15  E-value=0.098  Score=40.35  Aligned_cols=17  Identities=35%  Similarity=0.696  Sum_probs=14.8

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+||||++..+..+
T Consensus        43 Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          43 GMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCchhhHHHHHHH
Confidence            99999999999887653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=88.10  E-value=0.096  Score=41.52  Aligned_cols=18  Identities=22%  Similarity=0.300  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++++|.++
T Consensus        46 ~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          46 EGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhhc
Confidence            399999999999999753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=86.89  E-value=0.11  Score=39.00  Aligned_cols=16  Identities=31%  Similarity=0.408  Sum_probs=14.0

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |.+||||||+.+.|-.
T Consensus        10 G~~gSGKstva~~l~~   25 (191)
T d1uf9a_          10 GNIGSGKSTVAALLRS   25 (191)
T ss_dssp             ECTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=86.60  E-value=0.13  Score=40.68  Aligned_cols=18  Identities=44%  Similarity=0.743  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||+++++|.++
T Consensus        48 ~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          48 VGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ecCCCCChhHHHHHHHHH
Confidence            399999999999999864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=0.088  Score=40.74  Aligned_cols=16  Identities=38%  Similarity=0.395  Sum_probs=14.5

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |..||||||+++.|..
T Consensus         9 G~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           9 GNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CSTTSSHHHHHTTTGG
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998775

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.52  E-value=0.11  Score=41.55  Aligned_cols=18  Identities=28%  Similarity=0.501  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||++++++.++
T Consensus        47 ~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          47 YGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             BCCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcchhHHHHHHHH
Confidence            399999999999999775

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.48  E-value=0.14  Score=38.70  Aligned_cols=16  Identities=38%  Similarity=0.677  Sum_probs=14.3

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |.-||||||++..|..
T Consensus         7 G~dGsGKST~~~~L~~   22 (208)
T d1gsia_           7 GVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8899999999998864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=86.43  E-value=0.13  Score=38.83  Aligned_cols=20  Identities=30%  Similarity=0.564  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 025189            1 MGKGGVGKSSTVNSVIGERV   20 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~~   20 (256)
                      .|++|+||||+...|.....
T Consensus        21 ~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          21 TGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EESSSSSHHHHHHHHHTTTC
T ss_pred             EcCCCCCHHHHHHHHHHcCC
Confidence            38999999999999887643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.31  E-value=0.14  Score=39.33  Aligned_cols=17  Identities=41%  Similarity=0.640  Sum_probs=15.2

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+||||++..+..+
T Consensus        42 Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          42 GPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CSSSSSHHHHHHHHHHH
T ss_pred             CCCCCChhHHHHHHHHH
Confidence            99999999999988764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.25  E-value=0.15  Score=37.95  Aligned_cols=18  Identities=17%  Similarity=0.268  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||++...+...
T Consensus        29 ~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          29 FGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            399999999999887753

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.18  E-value=0.15  Score=38.99  Aligned_cols=17  Identities=24%  Similarity=0.440  Sum_probs=15.0

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++||||||....|..+
T Consensus        10 Gp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_          10 GPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CSSCSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999888753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=85.95  E-value=0.12  Score=42.41  Aligned_cols=15  Identities=40%  Similarity=0.503  Sum_probs=13.3

Q ss_pred             CCCCCCHHHHHHHHh
Q 025189            2 GKGGVGKSSTVNSVI   16 (256)
Q Consensus         2 G~tG~GKSSliN~l~   16 (256)
                      |.+||||||+.+.|-
T Consensus        87 G~sgSGKSTla~~L~  101 (308)
T d1sq5a_          87 GSVAVGKSTTARVLQ  101 (308)
T ss_dssp             ECTTSSHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHH
Confidence            899999999988774

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=85.55  E-value=0.16  Score=38.66  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=14.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|..||||||+.+.|-.
T Consensus         8 TG~igSGKStv~~~l~~   24 (205)
T d1jjva_           8 TGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             ECSTTSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999997753

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.41  E-value=1.2  Score=35.31  Aligned_cols=16  Identities=19%  Similarity=0.391  Sum_probs=13.6

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |++|+|||+++-.+..
T Consensus        64 G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          64 GPESGGKTTLALAIVA   79 (268)
T ss_dssp             ESTTSSHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHH
Confidence            8999999999876664

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.40  E-value=0.17  Score=40.23  Aligned_cols=17  Identities=35%  Similarity=0.544  Sum_probs=15.7

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+|||++++++.++
T Consensus        45 GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          45 GPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCTTSSHHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHH
Confidence            99999999999999875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.21  E-value=0.11  Score=40.56  Aligned_cols=17  Identities=29%  Similarity=0.567  Sum_probs=14.9

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |.-|+|||||+|.++..
T Consensus        10 GFLGaGKTTll~~lL~~   26 (222)
T d1nija1          10 GFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             ESSSSSCHHHHHHHHHS
T ss_pred             eCCCCCHHHHHHHHHhc
Confidence            77899999999999853

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.14  E-value=0.15  Score=38.31  Aligned_cols=19  Identities=37%  Similarity=0.566  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      .|++|+||||+.-.|....
T Consensus        20 ~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          20 TGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             ECCTTSCHHHHHHHHHHTT
T ss_pred             EeCCCCCHHHHHHHHHHcC
Confidence            4999999999998888654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.05  E-value=0.15  Score=39.54  Aligned_cols=16  Identities=38%  Similarity=0.424  Sum_probs=14.3

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |.-||||||+++.|..
T Consensus         9 G~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           9 GNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             ECTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            7889999999999864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.92  E-value=0.079  Score=41.57  Aligned_cols=16  Identities=38%  Similarity=0.559  Sum_probs=14.0

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |++|+||||++..+..
T Consensus        41 Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          41 GTRGVGKTSIARLLAK   56 (239)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            9999999999987654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=84.37  E-value=0.2  Score=38.22  Aligned_cols=17  Identities=35%  Similarity=0.470  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      .|..||||||+.+.|-.
T Consensus         9 tG~igSGKStv~~~l~~   25 (208)
T d1vhta_           9 TGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCcCCHHHHHHHHHH
Confidence            49999999999997763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=84.31  E-value=0.21  Score=37.85  Aligned_cols=17  Identities=24%  Similarity=0.499  Sum_probs=15.0

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++||||||+...|..+
T Consensus        10 GppGSGKgT~ak~La~~   26 (225)
T d1ckea_          10 GPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999888753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.29  E-value=0.2  Score=40.60  Aligned_cols=15  Identities=40%  Similarity=0.470  Sum_probs=13.3

Q ss_pred             CCCCCCHHHHHHHHh
Q 025189            2 GKGGVGKSSTVNSVI   16 (256)
Q Consensus         2 G~tG~GKSSliN~l~   16 (256)
                      |.+|||||||...|.
T Consensus        34 G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          34 GPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            899999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=82.44  E-value=0.19  Score=42.53  Aligned_cols=18  Identities=28%  Similarity=0.342  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      +|.||+|||++++.++-+
T Consensus        56 ~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          56 NGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHHHHHH
Confidence            599999999999877643

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.42  E-value=0.11  Score=42.37  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=11.1

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |.|||||||+.++|..
T Consensus        11 G~SGSGKTTva~~l~~   26 (288)
T d1a7ja_          11 GSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             SCC---CCTHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            8999999999998654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=82.34  E-value=0.22  Score=37.77  Aligned_cols=16  Identities=38%  Similarity=0.632  Sum_probs=14.2

Q ss_pred             CCCCCCHHHHHHHHhC
Q 025189            2 GKGGVGKSSTVNSVIG   17 (256)
Q Consensus         2 G~tG~GKSSliN~l~g   17 (256)
                      |..||||||+++.|..
T Consensus         9 G~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           9 GLEGAGKTTARNVVVE   24 (210)
T ss_dssp             ECTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8899999999998864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.18  E-value=0.27  Score=37.85  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=15.6

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 025189            2 GKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         2 G~tG~GKSSliN~l~g~   18 (256)
                      |++|+|||-|++++..+
T Consensus        43 G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          43 GSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             CSSSSSHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHH
Confidence            99999999999999765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.97  E-value=2.5  Score=33.45  Aligned_cols=15  Identities=20%  Similarity=0.390  Sum_probs=12.3

Q ss_pred             CCCCCCHHHHHHHHh
Q 025189            2 GKGGVGKSSTVNSVI   16 (256)
Q Consensus         2 G~tG~GKSSliN~l~   16 (256)
                      |++|+|||+++-.+.
T Consensus        67 G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          67 GPESSGKTTVALHAV   81 (269)
T ss_dssp             CSSSSSHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHH
Confidence            899999999975444

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=81.71  E-value=0.24  Score=36.97  Aligned_cols=19  Identities=37%  Similarity=0.574  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 025189            1 MGKGGVGKSSTVNSVIGER   19 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~~   19 (256)
                      .|++|+||||+.-.|....
T Consensus        21 ~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          21 TGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EESTTSSHHHHHHHHHHTT
T ss_pred             EeCCCCCHHHHHHHHHHcC
Confidence            4899999999998877653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=81.57  E-value=0.25  Score=42.59  Aligned_cols=17  Identities=29%  Similarity=0.558  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|+||||||-|.++|.+
T Consensus        55 iGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          55 IGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999876

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=80.77  E-value=0.28  Score=41.10  Aligned_cols=17  Identities=24%  Similarity=0.468  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|+||||||-+..+|..
T Consensus        74 iGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          74 IGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             eCCCCccHHHHHHHHHh
Confidence            69999999999998853

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=80.47  E-value=0.27  Score=41.19  Aligned_cols=18  Identities=17%  Similarity=0.235  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 025189            1 MGKGGVGKSSTVNSVIGE   18 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g~   18 (256)
                      .|++|+|||++.++|.+.
T Consensus       160 ~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         160 KGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999998763

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=80.17  E-value=0.3  Score=39.96  Aligned_cols=17  Identities=29%  Similarity=0.444  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 025189            1 MGKGGVGKSSTVNSVIG   17 (256)
Q Consensus         1 vG~tG~GKSSliN~l~g   17 (256)
                      +|+||||||.|..+|..
T Consensus        58 ~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          58 AGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCcchhHHHHHHHHh
Confidence            59999999999988764