Citrus Sinensis ID: 025191

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHc
MEIQELTAVIKQDITALNSAVVDLQLVsnsrndgissdttshsttVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLfsstaskdsanpfvrqrplatrsaaastssspppwangspsssqlfprkqdgesqpllQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
MEIQELTAVIKQDITALNSAVVDLQLVSNsrndgissdttshsttvvddLKNRLMSATKEFKEVLTMrtenlkvhesrrqlfsstaskdsanpfVRQRPLATRsaaastssspppwangSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGIssdttshsttvvddLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQrplatrsaaastssspppWANGSPSSSQLFPRKQDGESQPLLqqqqhhqqqqhhqqqqqqqMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWlmikiffvlifflmiflffvA
******TAVIKQDITALNSAVVDLQLV******************************************************************************************************************************************************ESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFV*
MEIQELTAVIKQDITALNSAV******************************N**********************************************************************************************************************AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQ****************************************************************LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
MEIQELTAVIKQDITALNSAVVDLQLVSNSR**********HSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRR***********************************************************************HQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHi
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MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
Q9LK09347 Syntaxin-32 OS=Arabidopsi yes no 0.964 0.711 0.735 1e-90
Q9FFK1336 Syntaxin-31 OS=Arabidopsi no no 0.957 0.729 0.498 9e-58
Q24509467 Syntaxin-5 OS=Drosophila yes no 0.835 0.458 0.387 1e-32
Q08DB5355 Syntaxin-5 OS=Bos taurus yes no 0.812 0.585 0.375 2e-32
Q08851355 Syntaxin-5 OS=Rattus norv no no 0.792 0.571 0.363 3e-32
Q13190355 Syntaxin-5 OS=Homo sapien yes no 0.796 0.574 0.372 3e-32
Q8K1E0355 Syntaxin-5 OS=Mus musculu yes no 0.789 0.569 0.369 7e-32
O13644309 Integral membrane protein yes no 0.878 0.728 0.346 1e-29
Q20797413 Putative syntaxin-3 OS=Ca yes no 0.832 0.515 0.343 1e-27
Q01590340 Integral membrane protein yes no 0.890 0.670 0.296 1e-19
>sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 Back     alignment and function desciption
 Score =  332 bits (852), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/261 (73%), Positives = 215/261 (82%), Gaps = 14/261 (5%)

Query: 2   EIQELTAVIKQDITALNSAVVDLQLVSNSRND-GISS---DTTSHSTTVVDDLKNRLMSA 57
           EIQELT VIKQ+I+ALNSA+VDLQL  +S+ND G +S   D ++HS TVVDDLK RLM  
Sbjct: 95  EIQELTVVIKQEISALNSALVDLQLFRSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDT 154

Query: 58  TKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWA 117
           TKEFK+VLTMRTEN+KVHESRRQLFSS ASK+S NPFVRQRPLA ++AA  + S P PWA
Sbjct: 155 TKEFKDVLTMRTENMKVHESRRQLFSSNASKESTNPFVRQRPLAAKAAA--SESVPLPWA 212

Query: 118 NGSPSSS-QLFPRK-QDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQ 175
           NGS SSS QL P K  +GES PLLQQ Q  QQQQ      QQQMVPLQD+YMQ RAEAL 
Sbjct: 213 NGSSSSSSQLVPWKPGEGESSPLLQQSQQQQQQQ------QQQMVPLQDTYMQGRAEALH 266

Query: 176 NVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 235
            VESTIHEL +IF QLAT+VSQQGEIAIRID+NM+DT+ANVEGAQ  L +YLNSISSNRW
Sbjct: 267 TVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQLARYLNSISSNRW 326

Query: 236 LMIKIFFVLIFFLMIFLFFVA 256
           LM+KIFFVLI FLMIFLFFVA
Sbjct: 327 LMMKIFFVLIAFLMIFLFFVA 347
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 Back     alignment and function description
>sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 Back     alignment and function description
>sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 Back     alignment and function description
>sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 Back     alignment and function description
>sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 Back     alignment and function description
>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 Back     alignment and function description
>sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 Back     alignment and function description
>sp|Q20797|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=3 SV=1 Back     alignment and function description
>sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
356515506339 PREDICTED: syntaxin-32-like [Glycine max 0.910 0.687 0.811 8e-99
225430105340 PREDICTED: syntaxin-32 [Vitis vinifera] 0.925 0.697 0.870 2e-97
225445330338 PREDICTED: syntaxin-32 [Vitis vinifera] 0.957 0.724 0.798 3e-96
356507792339 PREDICTED: syntaxin-32-like [Glycine max 0.914 0.690 0.802 5e-96
388499590345 unknown [Lotus japonicus] 0.921 0.684 0.8 1e-94
255549032346 syntaxin, putative [Ricinus communis] gi 0.960 0.710 0.803 4e-93
356507790337 PREDICTED: syntaxin-32-like [Glycine max 0.914 0.694 0.786 5e-93
125569259319 hypothetical protein OsJ_00609 [Oryza sa 0.953 0.764 0.710 3e-91
212724026343 uncharacterized protein LOC100192511 [Ze 0.949 0.708 0.703 7e-91
115434878344 Os01g0179200 [Oryza sativa Japonica Grou 0.953 0.709 0.710 8e-91
>gi|356515506|ref|XP_003526441.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
 Score =  365 bits (938), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 202/249 (81%), Positives = 218/249 (87%), Gaps = 16/249 (6%)

Query: 1   MEIQELTAVIKQDITALNSAVVDLQLVSNSRND--GISSDTTSHSTTVVDDLKNRLMSAT 58
           MEIQELT VIKQDITALNSAVVDLQ + NSRN+   +S+DTTSHS+TVVDDLK RLMS T
Sbjct: 92  MEIQELTGVIKQDITALNSAVVDLQFLCNSRNESGNVSADTTSHSSTVVDDLKTRLMSTT 151

Query: 59  KEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPP-PWA 117
           KEFK+VLTMRTEN+KVHE+RRQLFSS+ASKDSANPF+RQRPLA R AAASTS++P  PWA
Sbjct: 152 KEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLAAR-AAASTSNAPALPWA 210

Query: 118 NGSPSSSQLFPRKQ-DGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQN 176
           NGSPSSSQ FP+KQ DGESQ               QQQQQQ++VPLQDSYMQSRAEALQN
Sbjct: 211 NGSPSSSQAFPKKQVDGESQ-----------PLLQQQQQQQEVVPLQDSYMQSRAEALQN 259

Query: 177 VESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWL 236
           VESTIHEL NIFNQLATLVSQQGEIAIRIDENMDDT+ANVEGAQGALLKYLNSISSNRWL
Sbjct: 260 VESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWL 319

Query: 237 MIKIFFVLI 245
           MIKIF VLI
Sbjct: 320 MIKIFSVLI 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430105|ref|XP_002284618.1| PREDICTED: syntaxin-32 [Vitis vinifera] gi|296081933|emb|CBI20938.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225445330|ref|XP_002284775.1| PREDICTED: syntaxin-32 [Vitis vinifera] gi|297738869|emb|CBI28114.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507792|ref|XP_003522648.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
>gi|388499590|gb|AFK37861.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255549032|ref|XP_002515572.1| syntaxin, putative [Ricinus communis] gi|223545516|gb|EEF47021.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356507790|ref|XP_003522647.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
>gi|125569259|gb|EAZ10774.1| hypothetical protein OsJ_00609 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|212724026|ref|NP_001131203.1| uncharacterized protein LOC100192511 [Zea mays] gi|194690858|gb|ACF79513.1| unknown [Zea mays] gi|194703094|gb|ACF85631.1| unknown [Zea mays] gi|219886571|gb|ACL53660.1| unknown [Zea mays] gi|414876036|tpg|DAA53167.1| TPA: Syntaxin 32 [Zea mays] Back     alignment and taxonomy information
>gi|115434878|ref|NP_001042197.1| Os01g0179200 [Oryza sativa Japonica Group] gi|9711872|dbj|BAB07966.1| putative syntaxin of plants 31 [Oryza sativa Japonica Group] gi|15289779|dbj|BAB63479.1| putative syntaxin of plants 31 [Oryza sativa Japonica Group] gi|113531728|dbj|BAF04111.1| Os01g0179200 [Oryza sativa Japonica Group] gi|125524663|gb|EAY72777.1| hypothetical protein OsI_00640 [Oryza sativa Indica Group] gi|215741218|dbj|BAG97713.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
TAIR|locus:2166419336 SYP31 "syntaxin of plants 31" 0.296 0.226 0.657 1.2e-39
ZFIN|ZDB-GENE-040718-18302 stx5a "syntaxin 5A" [Danio rer 0.300 0.254 0.597 4.4e-34
UNIPROTKB|B4DKR0259 STX5 "Syntaxin-5" [Homo sapien 0.300 0.297 0.532 1.6e-30
ZFIN|ZDB-GENE-030131-1825347 stx5al "syntaxin 5A, like" [Da 0.300 0.221 0.532 3.2e-30
UNIPROTKB|Q08DB5355 STX5 "Syntaxin-5" [Bos taurus 0.300 0.216 0.532 7.1e-30
UNIPROTKB|Q13190355 STX5 "Syntaxin-5" [Homo sapien 0.300 0.216 0.532 7.1e-30
UNIPROTKB|E2R287355 STX5 "Uncharacterized protein" 0.300 0.216 0.532 1.5e-29
MGI|MGI:1928483355 Stx5a "syntaxin 5A" [Mus muscu 0.300 0.216 0.532 1.5e-29
RGD|68426355 Stx5 "syntaxin 5" [Rattus norv 0.300 0.216 0.532 1.5e-29
UNIPROTKB|I3LPE5355 STX5 "Uncharacterized protein" 0.300 0.216 0.519 1.6e-29
TAIR|locus:2166419 SYP31 "syntaxin of plants 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 252 (93.8 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 50/76 (65%), Positives = 63/76 (82%)

Query:   160 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 219
             VP Q++Y QSRA AL +VES I EL  IF QLAT+V+QQGE+AIRID+NMD+++ NVEGA
Sbjct:   240 VPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGA 299

Query:   220 QGALLKYLNSISSNRW 235
             + ALL++L  ISSNRW
Sbjct:   300 RSALLQHLTRISSNRW 315
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009504 "cell plate" evidence=IDA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
ZFIN|ZDB-GENE-040718-18 stx5a "syntaxin 5A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B4DKR0 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1825 stx5al "syntaxin 5A, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DB5 STX5 "Syntaxin-5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q13190 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R287 STX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1928483 Stx5a "syntaxin 5A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|68426 Stx5 "syntaxin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPE5 STX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LK09SYP32_ARATHNo assigned EC number0.73560.96480.7118yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032536001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (411 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034036001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (218 aa)
    ••• 0.854
GSVIVG00007496001
SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (123 aa)
    ••• 0.838
GSVIVG00003818001
SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (224 aa)
    ••• 0.804
GSVIVG00020498001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (170 aa)
     •• 0.803

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
pfam0573962 pfam05739, SNARE, SNARE domain 9e-12
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 7e-10
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 9e-10
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 5e-09
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 1e-07
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 2e-04
pfam00804103 pfam00804, Syntaxin, Syntaxin 0.004
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information 
 Score = 58.7 bits (143), Expect = 9e-12
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 170 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 229
           R EAL+ +ES+I EL  +F  +   V +QGE+  RID+N+D+T + VE A   L K    
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 230 IS 231
             
Sbjct: 61  QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.93
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.9
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.88
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.76
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.52
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.36
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.28
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 99.06
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.04
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 98.38
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.75
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.47
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.42
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 97.24
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 97.21
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 97.06
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 97.04
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 97.0
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 96.54
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.47
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 96.24
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 95.59
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 95.04
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 94.54
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 92.57
KOG2678244 consensus Predicted membrane protein [Function unk 92.41
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 92.15
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 91.86
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 90.5
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 90.28
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 89.53
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 89.13
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 89.05
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 88.88
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 88.54
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 88.34
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 88.17
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 83.64
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 83.62
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-41  Score=291.08  Aligned_cols=229  Identities=45%  Similarity=0.664  Sum_probs=186.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 025191            1 MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQ   80 (256)
Q Consensus         1 ~eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~   80 (256)
                      |||.+||+.||+++..+++.|..|+.+++..+..++.+...|++|||..|+++|++++++|+++++.|++++|+.+.|++
T Consensus        79 VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~d  158 (311)
T KOG0812|consen   79 VEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRD  158 (311)
T ss_pred             hhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHH
Confidence            69999999999999999999999999986555434466799999999999999999999999999999999999999999


Q ss_pred             hhcccccCCCCCcccccCcccccccccCCCCCCCCCCCC----CCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHHH
Q 025191           81 LFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANG----SPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQ  156 (256)
Q Consensus        81 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~Q  156 (256)
                      +|....++....|...       .++     .+.||..-    ...+.++...+.+|.+.   +            +++|
T Consensus       159 kfs~~~a~~~a~p~~n-------~~a-----~~~~~~~l~~~~~~~sq~~~~ln~gd~~~---~------------qqqQ  211 (311)
T KOG0812|consen  159 KFSASYASLNANPVSN-------SAA-----RLHPLKLLVDPKDEASQDVESLNMGDSSN---P------------QQQQ  211 (311)
T ss_pred             HhccccCCCCCcccCc-------ccc-----cCCchhhhcCchhhcccccccccccCCCC---C------------HHHH
Confidence            9997654432122210       000     01111100    00111111112222221   1            3677


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCchH
Q 025191          157 QQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWL  236 (256)
Q Consensus       157 ~ql~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r~~  236 (256)
                      ++++++.+.|+++|.+++.+||.+|.||++||.+||+||.+|||++.|||+||+.+..||++|..+|.|++.+.++|||+
T Consensus       212 m~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwL  291 (311)
T KOG0812|consen  212 MALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWL  291 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHH
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhC
Q 025191          237 MIKIFFVLIFFLMIFLFFVA  256 (256)
Q Consensus       237 ~~~i~~vliv~~l~~i~~~~  256 (256)
                      +++||+|+|||+++|++|+|
T Consensus       292 mvkiF~i~ivFflvfvlf~~  311 (311)
T KOG0812|consen  292 MVKIFGILIVFFLVFVLFLA  311 (311)
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999986

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 3e-20
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 6e-17
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 3e-14
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 8e-14
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 7e-13
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 1e-12
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 1e-12
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 2e-12
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 2e-12
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
 Score = 82.1 bits (203), Expect = 3e-20
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 149 QHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDEN 208
            H      +Q +    S +++R   +  +E++I EL ++F  +A LV  QGE+  RI+ N
Sbjct: 2   SHMDSSISKQAL----SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 57

Query: 209 MDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFV 255
           ++  +  VE A     K +   S  R   I I    +   +I    +
Sbjct: 58  VEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTI 104
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.92
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.92
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.91
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.88
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.86
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.83
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.82
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.77
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.77
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.58
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.56
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 98.27
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 98.0
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.96
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 97.9
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.69
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 97.68
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 97.62
3b5n_D64 Protein transport protein SEC9; snare complex, syn 97.53
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.38
1s94_A180 S-syntaxin; three helix bundle, structural plastic 97.34
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.44
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 96.02
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 95.25
3b5n_C70 Protein transport protein SEC9; snare complex, syn 95.18
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 93.2
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 92.4
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 89.75
2nps_C81 Vesicle transport through interaction with T- snar 89.02
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 84.98
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 84.04
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=99.92  E-value=5.8e-26  Score=201.24  Aligned_cols=185  Identities=14%  Similarity=0.192  Sum_probs=118.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCCcc-hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025191            2 EIQELTAVIKQDITALNSAVVDLQLVSNSRND-----GISSD-TTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVH   75 (256)
Q Consensus         2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~-----~~~~~-~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~   75 (256)
                      +|+.||.+|++.+..|+..|+.|+...+....     ..+.. +.+++.|++..|..+|++++..|+++|..|.+++|.+
T Consensus        89 ~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~  168 (279)
T 2xhe_B           89 KLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGEN  168 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999987653210     11222 5689999999999999999999999999999999987


Q ss_pred             hhhhhhhcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhhhhhhhhHH
Q 025191           76 ESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQ  155 (256)
Q Consensus        76 ~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  155 (256)
                      ..|...+..+.....  .                             ...+++.  ++.               ..+++.
T Consensus       169 ~~R~~~i~~~~~~~e--e-----------------------------~~~~~e~--g~~---------------~~f~q~  200 (279)
T 2xhe_B          169 VARQCRVVEPSLSDD--A-----------------------------IQKVIEH--GTE---------------GIFSGM  200 (279)
T ss_dssp             TTTSCCSSCCCCSST--T-----------------------------HHHHHHH--C-----------------------
T ss_pred             HHHHHHHhCCCCCHH--H-----------------------------HHHHHhC--Cch---------------HHHHHH
Confidence            665322111100000  0                             0000000  000               001111


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcccCc
Q 025191          156 QQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR  234 (256)
Q Consensus       156 Q~ql~~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qge~id~Id~nv~~a~~~v~~g~~eL~kA~~~~~~~r  234 (256)
                      +.+..+....++++|+++|.+|+++|.||++||.+|+.||++||++||+||+||+.|..+|++|+.+|.+|.+|++++|
T Consensus       201 ~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R  279 (279)
T 2xhe_B          201 RLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR  279 (279)
T ss_dssp             ---------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence            1112233455799999999999999999999999999999999999999999999999999999999999999999876
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 256
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 1e-11
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 20/200 (10%), Positives = 61/200 (30%), Gaps = 11/200 (5%)

Query: 1   MEIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKE 60
           +      + I +D+   +  +  +  +       ++ +  SH    +D+   +      +
Sbjct: 5   VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFK 64

Query: 61  FKEVLTMRTENLKVHESRRQLFSSTASK--DSANPFVRQRPLATRSAAASTSSSPPPWAN 118
            K  +     +     +++    ++  +       +        +      +        
Sbjct: 65  LKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDS-NYKEENKEQAKRQYMIIQ 123

Query: 119 GSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVE 178
              +  ++     D   Q            Q      ++       + +Q+R + L  +E
Sbjct: 124 PEATEDEVEAAISDVGGQQ--------IFSQALLNANRRGEAKTALAEVQARHQELLKLE 175

Query: 179 STIHELGNIFNQLATLVSQQ 198
            ++ EL  +FN +  LV +Q
Sbjct: 176 KSMAELTQLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.42
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 96.84
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=4e-13  Score=109.17  Aligned_cols=146  Identities=15%  Similarity=0.186  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 025191            2 EIQELTAVIKQDITALNSAVVDLQLVSNSRNDGISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHESRRQL   81 (256)
Q Consensus         2 eIe~LT~~Ik~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~nVv~~L~~~l~~~s~~Fr~~q~~~~~~lk~~~~R~~~   81 (256)
                      +|+.++..|+..+..|...+..++...         ...+...+.+..|..+|.+++..|+.++..|.+++|.+..|...
T Consensus        50 ~i~~~~~~~~~~~~~~k~~~~~~~~~~---------~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~  120 (196)
T d1fioa_          50 SLDNFVAQATDLQFKLKNEIKSAQRDG---------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM  120 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT---------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            467777777777777777777766532         33578899999999999999999999999999999999888877


Q ss_pred             hcccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhhh-hhhhhhHHHHhhc
Q 025191           82 FSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQ-QQHHQQQQQQQMV  160 (256)
Q Consensus        82 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~Q~ql~  160 (256)
                      +..+.....  ..          .                          ....+.. +    .+. .+...+.......
T Consensus       121 ~~~~~~~~~--~~----------~--------------------------~~~~~~~-~----~~~~~~~~~~~~~~~~~  157 (196)
T d1fioa_         121 IIQPEATED--EV----------E--------------------------AAISDVG-G----QQIFSQALLNANRRGEA  157 (196)
T ss_dssp             HHCTTCCHH--HH----------H--------------------------HHTSHHH-H----HHHHHHHTC------CH
T ss_pred             ccCCCccch--hh----------h--------------------------Hhhcccc-c----hHHHHHHHHHHHHHHHH
Confidence            664432210  00          0                          0000000 0    000 0011111111223


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025191          161 PLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQG  199 (256)
Q Consensus       161 ~~~~~~~~eR~~~i~~Ie~~i~el~~if~~l~~lV~~Qg  199 (256)
                      .....++++|+++|.+|+++|.||++||.+||+||++|.
T Consensus       158 ~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         158 KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            456778999999999999999999999999999999883
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure