Citrus Sinensis ID: 025198
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 256 | ||||||
| 255583504 | 254 | conserved hypothetical protein [Ricinus | 0.964 | 0.972 | 0.709 | 1e-101 | |
| 225463047 | 254 | PREDICTED: uncharacterized protein LOC10 | 0.906 | 0.913 | 0.741 | 1e-100 | |
| 147822285 | 256 | hypothetical protein VITISV_018847 [Viti | 0.875 | 0.875 | 0.741 | 4e-97 | |
| 296084559 | 214 | unnamed protein product [Vitis vinifera] | 0.808 | 0.967 | 0.777 | 5e-94 | |
| 388515761 | 243 | unknown [Medicago truncatula] | 0.824 | 0.868 | 0.726 | 3e-89 | |
| 357478421 | 245 | hypothetical protein MTR_4g116350 [Medic | 0.824 | 0.861 | 0.726 | 4e-89 | |
| 351721889 | 246 | uncharacterized protein LOC100526934 [Gl | 0.863 | 0.898 | 0.675 | 2e-86 | |
| 18407481 | 246 | chlororespiratory reduction 6 [Arabidops | 0.769 | 0.800 | 0.755 | 4e-86 | |
| 449457943 | 259 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.957 | 0.665 | 3e-85 | |
| 388518735 | 252 | unknown [Lotus japonicus] | 0.785 | 0.797 | 0.722 | 5e-85 |
| >gi|255583504|ref|XP_002532510.1| conserved hypothetical protein [Ricinus communis] gi|223527785|gb|EEF29886.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/251 (70%), Positives = 210/251 (83%), Gaps = 4/251 (1%)
Query: 3 ATTTIKPLLPLSLSPNKSCSYSIPSSSSFISCNPISDSTATFSLLHSNRPRGQISVSVAF 62
ATT IKPL+P L P + +PS+S ++S PI+DS + R +GQ++VSV+F
Sbjct: 2 ATTIIKPLIPHFLLPKQI----VPSTSPWLSSKPITDSLPNLPVSCLVRQQGQVAVSVSF 57
Query: 63 NPQGNFDIPMFEDEGNSSKLEPPMPPTEGRFDVVLENDAIRSLDLSPFHSATGITSPTLA 122
NP GNFD+ +FED+ +S +EP MPPTE RFDV ++N AI+SLDLSPF++ATGIT+P
Sbjct: 58 NPSGNFDLSLFEDDEDSPNVEPSMPPTEDRFDVAIDNVAIQSLDLSPFNNATGITAPLSV 117
Query: 123 EPKEFLERTIGFTINYTREDPRDPRELSEFPDIRLWFVRLDAAYPWIPVLLDWRAGELAR 182
EPKEFLERTIGFTINYTREDPRDPRELSEFPDIRLWFVRLDA YPW+PVLLDWRAGELAR
Sbjct: 118 EPKEFLERTIGFTINYTREDPRDPRELSEFPDIRLWFVRLDATYPWLPVLLDWRAGELAR 177
Query: 183 YAAMLVPHQMSMKMGIVFNPEALELFIMNKVFVVYTWFKQHNVQKPRLKTSDMARMLGFG 242
YAAMLVPHQM+MKMG+VFNPEALELF+M KVF+VY+W KQHN+ KPRLKTSDMARMLGFG
Sbjct: 178 YAAMLVPHQMNMKMGVVFNPEALELFVMKKVFIVYSWLKQHNIPKPRLKTSDMARMLGFG 237
Query: 243 IEDRLFDLVDR 253
I D LFDL+D+
Sbjct: 238 IGDELFDLIDQ 248
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463047|ref|XP_002268060.1| PREDICTED: uncharacterized protein LOC100255118 [Vitis vinifera] gi|147826988|emb|CAN77780.1| hypothetical protein VITISV_004173 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|147822285|emb|CAN72910.1| hypothetical protein VITISV_018847 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|296084559|emb|CBI25580.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|388515761|gb|AFK45942.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|357478421|ref|XP_003609496.1| hypothetical protein MTR_4g116350 [Medicago truncatula] gi|355510551|gb|AES91693.1| hypothetical protein MTR_4g116350 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|351721889|ref|NP_001236201.1| uncharacterized protein LOC100526934 [Glycine max] gi|255631181|gb|ACU15956.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|18407481|ref|NP_566113.1| chlororespiratory reduction 6 [Arabidopsis thaliana] gi|11692910|gb|AAG40058.1|AF324707_1 At2g47910 [Arabidopsis thaliana] gi|12642888|gb|AAK00386.1|AF339704_1 unknown protein [Arabidopsis thaliana] gi|3738303|gb|AAC63645.1| expressed protein [Arabidopsis thaliana] gi|15010782|gb|AAK74050.1| T9J23.7/T9J23.7 [Arabidopsis thaliana] gi|15809758|gb|AAL06807.1| At2g47910/T9J23.7 [Arabidopsis thaliana] gi|20197562|gb|AAM15131.1| expressed protein [Arabidopsis thaliana] gi|21536566|gb|AAM60898.1| unknown [Arabidopsis thaliana] gi|330255816|gb|AEC10910.1| chlororespiratory reduction 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|449457943|ref|XP_004146707.1| PREDICTED: uncharacterized protein LOC101216098 [Cucumis sativus] gi|449505400|ref|XP_004162457.1| PREDICTED: uncharacterized protein LOC101227212 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|388518735|gb|AFK47429.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 256 | ||||||
| TAIR|locus:2043338 | 246 | CRR6 "AT2G47910" [Arabidopsis | 0.769 | 0.800 | 0.755 | 1.3e-82 |
| TAIR|locus:2043338 CRR6 "AT2G47910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 151/200 (75%), Positives = 175/200 (87%)
Query: 56 ISVSVAFNPQGNFDIPMFEDEGNSSKLEPPMPPTEGRFDVVLENDAIRSLDLSPFHSATG 115
++VSVAFNP GNFDI FE++ +S K+EPPMPPT GR++VV++ND+I LDLSPF A G
Sbjct: 44 VAVSVAFNPSGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPFQRAIG 103
Query: 116 ITSPT---LAEPKEFLERTIGFTINYTREDPRDPRELSEFPDIRLWFVRLDAAYPWIPVL 172
ITSP +AEPK +L+RTIGFTINY REDP DPRELSE+PD+RLWFVRLDA YPW+P+L
Sbjct: 104 ITSPDDFGVAEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWLPLL 163
Query: 173 LDWRAGELARYAAMLVPHQMSMKMGIVFNPEALELFIMNKVFVVYTWFKQHNVQKPRLKT 232
LDWRAGELARYAAMLVPHQMS++MG+VFNPEALELF+MNKVFVVY W K+H V KPRLKT
Sbjct: 164 LDWRAGELARYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKT 223
Query: 233 SDMARMLGFGIEDRLFDLVD 252
SDMARMLGFGI D LFDL+D
Sbjct: 224 SDMARMLGFGIGDELFDLID 243
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 256 224 0.00099 112 3 11 22 0.37 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 584 (62 KB)
Total size of DFA: 173 KB (2101 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.01u 0.08s 19.09t Elapsed: 00:00:01
Total cpu time: 19.01u 0.08s 19.09t Elapsed: 00:00:01
Start: Mon May 20 20:22:03 2013 End: Mon May 20 20:22:04 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00005655001 | SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_155, whole genome shotgun sequence); (254 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00023910001 | • | • | • | 0.836 | |||||||
| ndhM | • | • | • | 0.816 | |||||||
| GSVIVG00017440001 | • | • | • | 0.724 | |||||||
| GSVIVG00002190001 | • | • | 0.611 | ||||||||
| GSVIVG00022834001 | • | • | 0.610 | ||||||||
| GSVIVG00023908001 | • | • | 0.608 | ||||||||
| GSVIVG00037644001 | • | • | • | 0.605 | |||||||
| GSVIVG00023602001 | • | • | 0.599 | ||||||||
| GSVIVG00034806001 | • | • | • | 0.593 | |||||||
| GSVIVG00006469001 | • | • | 0.585 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 256 | |||
| pfam08847 | 150 | pfam08847, DUF1817, Domain of unknown function (DU | 1e-75 | |
| COG5474 | 159 | COG5474, COG5474, Uncharacterized conserved protei | 7e-46 |
| >gnl|CDD|149793 pfam08847, DUF1817, Domain of unknown function (DUF1817) | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 1e-75
Identities = 81/155 (52%), Positives = 103/155 (66%), Gaps = 6/155 (3%)
Query: 96 VLENDAIRSLDLSPFHSATGITSPTLAEPKEFLERTIGFTINYTREDPRDPRELSEFPDI 155
++ DAIR LDLSP + L LE+ + TI++ RE P DPRELSE P++
Sbjct: 1 TIDADAIRRLDLSPLQEWIELPLGDLLA----LEQQLELTIDWPRE-PDDPRELSECPEV 55
Query: 156 RLWFVRLDAAYPWIPVLLDWRAGELARYAAMLVPHQMSMKMGIVFNPEALELFIMNKVFV 215
RLWF+R DA YPW+P+LLDW AGELARY AMLVPHQ S GI FNPEALELF+M+K+FV
Sbjct: 56 RLWFLRADARYPWLPLLLDWSAGELARYVAMLVPHQFSRTEGIRFNPEALELFVMHKLFV 115
Query: 216 VYTWFKQHNVQKPRLKTSDMARMLGFGIEDRLFDL 250
+ W KQ + + MA MLG+ ++D F+L
Sbjct: 116 LDDWLKQQGLSSRG-RLKQMAAMLGYELDDEFFEL 149
|
Members of this family are functionally uncharacterized. Length = 150 |
| >gnl|CDD|227761 COG5474, COG5474, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 256 | |||
| PF08847 | 150 | DUF1817: Domain of unknown function (DUF1817); Int | 100.0 | |
| COG5474 | 159 | Uncharacterized conserved protein [Function unknow | 100.0 |
| >PF08847 DUF1817: Domain of unknown function (DUF1817); InterPro: IPR014946 Members of this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-81 Score=530.11 Aligned_cols=150 Identities=57% Similarity=1.069 Sum_probs=144.4
Q ss_pred EeChhhhhhcCCchhhhhhccCCCCCCCchhhhcceeEEEEeecCCCCCCCccccCCCchhhhHhhhcCCCCceeEEEec
Q 025198 96 VLENDAIRSLDLSPFHSATGITSPTLAEPKEFLERTIGFTINYTREDPRDPRELSEFPDIRLWFVRLDAAYPWIPVLLDW 175 (256)
Q Consensus 96 ~I~~d~I~~LDLSPv~~~ie~~~~L~~~~~~~Leq~L~F~i~ypr~dp~DPRELSEIPEvRLWFvRLDA~YPWLP~lLDw 175 (256)
+|++|+|++|||||++++++ +..+.+..+||+|+|+|+|||+ ++||||||||||||||||||||+|||||++|||
T Consensus 1 ~i~~d~I~~LDLSP~~~~~~----~~~~~~~~~e~~l~f~i~ypr~-~~DPRELSEiPEvRLWFiRlDa~yPWlP~lLdw 75 (150)
T PF08847_consen 1 TINADAIRRLDLSPLQTWIE----LPEEALLSLEQQLGFEIDYPRE-PDDPRELSEIPEVRLWFIRLDARYPWLPFLLDW 75 (150)
T ss_pred CCChHHHHHcCCcHHHHHHh----cchhhHHhhcceeeEEEeccCC-CCCchhhhcccHHHHHHHHhccCCCcchheecc
Confidence 48999999999999999998 4455677789999999999995 999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhcccccccccceeeChhHHHHHHHhhHHhHHHHHhhcCCCCccchHHHHHHHhCCcccchhhhhh
Q 025198 176 RAGELARYAAMLVPHQMSMKMGIVFNPEALELFIMNKVFVVYTWFKQHNVQKPRLKTSDMARMLGFGIEDRLFDLV 251 (256)
Q Consensus 176 kaGELaRyvAMLVPHQFs~~eGI~FNPEALEifvm~KvFvL~~WLk~~~i~~~r~~l~~MAqmLGyeLdd~ff~li 251 (256)
|+|||+||||||||||||++|||||||||||||||||||+|++|+|++|+++ ++||++||||||||||++||++|
T Consensus 76 ~~GeL~Ry~AMLVPHqfs~~eGi~fnPEALEifvm~klf~L~~wl~~~~i~~-~~~l~~MA~~lGyeld~~f~~li 150 (150)
T PF08847_consen 76 RSGELARYVAMLVPHQFSRKEGIQFNPEALEIFVMHKLFVLDDWLKQQGIPS-RSRLKSMAQMLGYELDDEFFDLI 150 (150)
T ss_pred ccCcHHHHHHHhCccccccccCceeCHHHHHHHHHHHHHHHHHHHHHcCCCc-hhhHHHHHHHhCCCcCHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999 79999999999999999999986
|
|
| >COG5474 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00