Citrus Sinensis ID: 025213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNCQLSPETALVVFVWLNVLCHACSF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccEEEEEEHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHEEHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRaflplksttwwpFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFAdrvgkprlfLTDKMQIALAGGLGHGVAHAVFFCLSlltpafgpatfyvdrcpqmPFFLISAIIALAFVTIHTFSMVIAfngyaegnttdqyfVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKncqlspetALVVFVWLNVLCHACSF
Flexible Loop (DISEMBL)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNCQLSPETALVVFVWLNVLCHACSF
Low Complexity Region (SEG)
MTVaagigyalialgPSLSLFVAVISKKPFliltvlsstllwlislivlsgiwRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIalagglghgvahavFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNCQLSPETALVVFVWLNVLCHACSF
Disordered region (IsUnstruct)
***AAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNCQLSPETALVVFVWLNVLCHAC**
Disordered Region (DISOPRED)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDT*****************KMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNCQLSPETALVVFVWLNVLCHACSF
Disordered Region (DISEMBL)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNCQLSPETALVVFVWLNVLCHACSF
Disordered Region (DISPRO)
*TVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNCQLSPETALVVFVWLNVLCHACSF
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNCQLSPETALVVFVWLNVLCHACSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q8L9G7	250	Gamma-secretase subunit A	yes	no	0.839	0.86	0.8	1e-97
Q9VQG2	238	Gamma-secretase subunit A	yes	no	0.75	0.806	0.313	2e-14
Q8WW43	257	Gamma-secretase subunit A	yes	no	0.679	0.677	0.304	3e-13
Q5RDM3	257	Gamma-secretase subunit A	yes	no	0.679	0.677	0.299	6e-13
Q8C7N7	257	Gamma-secretase subunit A	yes	no	0.679	0.677	0.299	1e-12
Q9DCZ9	258	Putative gamma-secretase	yes	no	0.679	0.674	0.281	7e-11
Q8BVF7	265	Gamma-secretase subunit A	no	no	0.683	0.660	0.270	9e-11
Q96BI3	265	Gamma-secretase subunit A	no	no	0.683	0.660	0.264	2e-10
Q8JHE9	258	Gamma-secretase subunit A	no	no	0.683	0.678	0.286	1e-09
Q55FS3	328	Gamma-secretase subunit A	yes	no	0.269	0.210	0.341	6e-05

>sp|Q8L9G7|APH1_ARATH Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2

 Score =  355 bits (912), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/215 (80%), Positives = 194/215 (90%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VIS+KPFLILTVLSSTLLWL+SLI+LSG+WR FLPLK
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QIALAG
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLL 215
           GYA+GN  DQ  VPV+HL AGM+    FA   C++
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVI 215

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9VQG2|APH1_DROME Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 12/204 (5%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MT+    G   IA GP  +LFV  I+  P  I+ ++++   WL+SL++ S +W A +PLK
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISS-LWYALIPLK 59

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQI-ALA 119
                  A  ++ SV FQE  R + +++ +  E  L A A+        +TD   I A  
Sbjct: 60  EF----LAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTR-----VTDNKHILAYV 110

Query: 120 GGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAF 179
            GLG G+   +F  +++L    GP T  +    ++ FF+ SA  AL+ + +HTF  VI F
Sbjct: 111 SGLGFGIISGMFALVNVLADMSGPGTMGLKGGTEL-FFVTSAAQALSIILLHTFWSVIFF 169

Query: 180 NGYAEGNTTDQYFVPVVHLVAGMV 203
           N +   N     +V   HL   ++
Sbjct: 170 NAFDTNNYIHIGYVVFSHLFVSLI 193

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch. It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q8WW43|APH1B_HUMAN Gamma-secretase subunit APH-1B OS=Homo sapiens GN=APH1B PE=1 SV=3

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 13/187 (6%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
           MT A   G A IA GP+L+L+V  I+ +P  I+ +++    WL+SL++ S +W   R  +
Sbjct: 1   MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60

Query: 58  PLKSTTWWPFALLIIS--SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
             K      + L+  +  SV  QE  R  ++K+ K+  + L +       P + L     
Sbjct: 61  DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRL----- 115

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYV-DRCPQMPFFLISAIIALAFVTIHTFS 174
           +A   GLG G+   VF  ++ L+ + GP T  +    PQ  FFL SA + L  + +H F 
Sbjct: 116 LAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQ--FFLYSAFMTLVIILLHVFW 173

Query: 175 MVIAFNG 181
            ++ F+G
Sbjct: 174 GIVFFDG 180

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Homo sapiens (taxid: 9606)

>sp|Q5RDM3|APH1B_PONAB Gamma-secretase subunit APH-1B OS=Pongo abelii GN=APH1B PE=2 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 13/187 (6%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
           MT A   G A IA GP+L+L+V  I+ +P  I+ +++    WL+SL++ S +W   R  +
Sbjct: 1   MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60

Query: 58  PLKSTTWWPFALLIIS--SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
             K      + L+  +  SV  QE  R  ++++ K+  + L +       P + L     
Sbjct: 61  DNKDGPTQKYLLIFGTFVSVYIQEMFRFAYYRLLKKASEGLKSINPGETAPSMRL----- 115

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYV-DRCPQMPFFLISAIIALAFVTIHTFS 174
           +A   GLG G+   VF  ++ L+ + GP T  +    PQ  FFL SA + L  + +H F 
Sbjct: 116 LAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQ--FFLYSAFMTLVIILLHVFW 173

Query: 175 MVIAFNG 181
            ++ F+G
Sbjct: 174 GIVFFDG 180

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Pongo abelii (taxid: 9601)

>sp|Q8C7N7|APH1B_MOUSE Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 13/187 (6%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
           MT A   G A IA GP+L+L+V  I+  P  ++ +++    WL+SL++ S  W   R   
Sbjct: 1   MTAAVFFGCAFIAFGPALALYVFTIATDPLRVIFLIAGAFFWLVSLLLSSVFWFLVRVIT 60

Query: 58  PLKSTTWWPFALL--IISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
             +      + L+  ++ SV  QE  R+ ++K+ K+  + L +       P + L     
Sbjct: 61  DNRDGPVQNYLLIFGVLLSVCIQELFRLAYYKLLKKASEGLKSINPEETAPSMRL----- 115

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVD-RCPQMPFFLISAIIALAFVTIHTFS 174
           +A   GLG G+   VF  ++ L+ + GP T  +    PQ  FFL SA + L  + +H F 
Sbjct: 116 LAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSPQ--FFLNSAFMTLVVIMLHVFW 173

Query: 175 MVIAFNG 181
            V+ F+G
Sbjct: 174 GVVFFDG 180

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Mus musculus (taxid: 10090)

>sp|Q9DCZ9|APH1C_MOUSE Putative gamma-secretase subunit APH-1C OS=Mus musculus GN=Aph1c PE=2 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 14/188 (7%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
           MT+    G A IA GP+ +L++  I+  P  ++ +++    WL+SL++ S  W   R   
Sbjct: 1   MTLPVFFGCAFIAFGPAFALYLFTIATDPLRVIFLIAGAFFWLVSLLLSSMFWFLVRVIT 60

Query: 58  PLKSTTWWPFALLI--ISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
             +  +   + L+   + SV  QE  R+ ++K+ K+  + L +       P   +   M+
Sbjct: 61  NNRDESVQNYLLIFGALLSVCIQELFRLAYYKLLKKASEGLKSI-----NPEEDIAPSMR 115

Query: 116 -IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVD-RCPQMPFFLISAIIALAFVTIHTF 173
            +A   GLG G+   VF  ++ L+ + GP T  +    PQ  FFL SA + L  + +H F
Sbjct: 116 LLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSPQ--FFLNSAFMTLVVIMLHVF 173

Query: 174 SMVIAFNG 181
             V+ F+G
Sbjct: 174 WGVVFFDG 181

Potential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein).

Mus musculus (taxid: 10090)

>sp|Q8BVF7|APH1A_MOUSE Gamma-secretase subunit APH-1A OS=Mus musculus GN=Aph1a PE=2 SV=2

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 10/185 (5%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPL- 59
           M  A   G   +A GP+ SLF+  ++  P  ++ +++    WL+SL++ S +W   + + 
Sbjct: 1   MGAAVFFGCTFVAFGPAFSLFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT 60

Query: 60  -KSTTWWPFALLIIS---SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
            +S     + LLI     SV  QE  R  ++K+ K+ ++ L + ++    P        Q
Sbjct: 61  DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSP----ISIRQ 116

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSM 175
           +A   GL  G+   VF  +++L  A GP    +       +FL SA +  A + +HTF  
Sbjct: 117 MAYVSGLSFGIISGVFSVINILADALGPGVVGI-HGDSPYYFLTSAFLTAAIILLHTFWG 175

Query: 176 VIAFN 180
           V+ F+
Sbjct: 176 VVFFD 180

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Mus musculus (taxid: 10090)

>sp|Q96BI3|APH1A_HUMAN Gamma-secretase subunit APH-1A OS=Homo sapiens GN=APH1A PE=1 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPL- 59
           M  A   G   +A GP+ +LF+  ++  P  ++ +++    WL+SL++ S +W   + + 
Sbjct: 1   MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT 60

Query: 60  -KSTTWWPFALLIIS---SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
            +S     + LLI     SV  QE  R  ++K+ K+ ++ L + ++    P        Q
Sbjct: 61  DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSP----ISIRQ 116

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSM 175
           +A   GL  G+   VF  +++L  A GP    +       +FL SA +  A + +HTF  
Sbjct: 117 MAYVSGLSFGIISGVFSVINILADALGPGVVGI-HGDSPYYFLTSAFLTAAIILLHTFWG 175

Query: 176 VIAFN 180
           V+ F+
Sbjct: 176 VVFFD 180

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Homo sapiens (taxid: 9606)

>sp|Q8JHE9|APH1B_DANRE Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 10/185 (5%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPL- 59
           MTVA   G   IA GP+++LF+  I++ P  ++ +++    WL+SL++ S +W   + + 
Sbjct: 1   MTVAVFFGCTFIAFGPAIALFMFTIARDPLRVIFLIAGAFFWLVSLLLSSLVWFITVQIS 60

Query: 60  -KSTTWWPFALLIIS---SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
            K++      LLI     SV  QE  R  ++++ K+  + L A +     P        Q
Sbjct: 61  NKNSATQQRGLLIFGVVLSVLLQEAFRYGYYRLLKKANEGLLALSQEDTMP----ISMRQ 116

Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSM 175
           +A   GLG G     F  +++L+ + GP T  +    Q  +F+ SA + LA + +H F  
Sbjct: 117 LAYVSGLGFGFMSGAFSVVNILSDSLGPGTVGIHGESQ-HYFISSAFMTLAIILLHMFWG 175

Query: 176 VIAFN 180
           V+ F 
Sbjct: 176 VVFFE 180

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors. It may represent a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Danio rerio (taxid: 7955)

>sp|Q55FS3|APH1_DICDI Gamma-secretase subunit Aph-1 OS=Dictyostelium discoideum GN=aph1 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%)

Query: 119 AGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIA 178
           A G+G GVA+      S+L  + GP T +   CP +  F++S+II L    +H    V+A
Sbjct: 200 AIGVGSGVAYGFIMFGSILWESTGPGTLFSPACPSVNLFMLSSIITLFMTLLHVVYNVLA 259

Query: 179 FNGYAEGNTTDQYFVPVVHLVA 200
           F GY         FV + H V 
Sbjct: 260 FQGYRSKKYHLVAFVIITHFVT 281

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors precursor protein. It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
224093158	244	predicted protein [Populus trichocarpa]	0.902	0.946	0.798	1e-100
297826587	250	protein binding protein [Arabidopsis lyr	0.839	0.86	0.8	6e-96
18402667	250	gamma-secretase subunit APH1-like protei	0.839	0.86	0.8	8e-96
388495380	249	unknown [Lotus japonicus]	0.832	0.855	0.802	1e-95
21594204	250	unknown [Arabidopsis thaliana]	0.839	0.86	0.795	2e-95
363807826	249	uncharacterized protein LOC100794637 [Gl	0.902	0.927	0.738	9e-93
356538907	249	PREDICTED: gamma-secretase subunit APH1-	0.902	0.927	0.751	1e-92
388493548	249	unknown [Medicago truncatula]	0.832	0.855	0.779	7e-92
255647968	249	unknown [Glycine max]	0.902	0.927	0.746	1e-91
217075164	249	unknown [Medicago truncatula]	0.832	0.855	0.774	5e-91

>gi|224093158|ref|XP_002309813.1| predicted protein [Populus trichocarpa] gi|222852716|gb|EEE90263.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/233 (79%), Positives = 207/233 (88%), Gaps = 2/233 (0%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLF++VISKKPFLILTVLSSTLLWL+SLIVL+G+WRAFLPLK
Sbjct: 1   MTVAAGIGYALLALGPSLSLFISVISKKPFLILTVLSSTLLWLMSLIVLAGVWRAFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           STTWWPFA+LI++SV FQEGLR+LFWKVYKRLED LDAFADR+ KPRLFLTDKM IALAG
Sbjct: 61  STTWWPFAILILTSVSFQEGLRILFWKVYKRLEDILDAFADRLAKPRLFLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATF+VD+C Q+PFFL+SAIIALAFVTIHT SMVIAFN
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFFVDKCSQLPFFLVSAIIALAFVTIHTCSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNC 233
           GYAEGN  DQYFVP VHLVAGMV    FA   C++     LL  + ++ L +C
Sbjct: 181 GYAEGNKVDQYFVPAVHLVAGMVTLVNFASGGCVVG--IPLLYFMAILTLLHC 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826587|ref|XP_002881176.1| protein binding protein [Arabidopsis lyrata subsp. lyrata] gi|297327015|gb|EFH57435.1| protein binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  356 bits (913), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 172/215 (80%), Positives = 194/215 (90%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VIS+KPFLILTVLSSTLLWL+SLI+LSG+WR FLPLK
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QIALAG
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLL 215
           GYA+GN  DQ  VPV+HL AGM+    FA   C++
Sbjct: 181 GYAKGNKVDQVIVPVIHLAAGMLTLVNFASEGCVI 215

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402667|ref|NP_565724.1| gamma-secretase subunit APH1-like protein [Arabidopsis thaliana] gi|37077331|sp|Q8L9G7.2|APH1_ARATH RecName: Full=Gamma-secretase subunit APH1-like gi|17381290|gb|AAL36063.1| At2g31440/T28P16.7 [Arabidopsis thaliana] gi|20198156|gb|AAD26475.2| unknown protein [Arabidopsis thaliana] gi|20453379|gb|AAM19928.1| At2g31440/T28P16.7 [Arabidopsis thaliana] gi|330253454|gb|AEC08548.1| gamma-secretase subunit APH1-like protein [Arabidopsis thaliana]

 Score =  355 bits (912), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 172/215 (80%), Positives = 194/215 (90%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VIS+KPFLILTVLSSTLLWL+SLI+LSG+WR FLPLK
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QIALAG
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLL 215
           GYA+GN  DQ  VPV+HL AGM+    FA   C++
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVI 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495380|gb|AFK35756.1| unknown [Lotus japonicus]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 171/213 (80%), Positives = 190/213 (89%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTV+AGIGYAL+ALGPSLS+F++VISKKPFLILTVLSSTLLWLISLIVLSGIWR FLPL 
Sbjct: 1   MTVSAGIGYALVALGPSLSIFISVISKKPFLILTVLSSTLLWLISLIVLSGIWRGFLPLS 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +T WWP+A+LI+SS+ FQEGLR+ FWK+YKRLED LDAFADRV KP LFLTDKM IALAG
Sbjct: 61  TTAWWPYAILILSSIAFQEGLRLFFWKIYKRLEDILDAFADRVSKPHLFLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VDRC Q+PFFL+SA+I LAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDRCSQVPFFLLSALIGLAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFC 213
           GYAEGN  DQYFVP+VH VAG V     A   C
Sbjct: 181 GYAEGNKVDQYFVPIVHFVAGAVTMVNLAPGGC 213

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594204|gb|AAM65980.1| unknown [Arabidopsis thaliana]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 171/215 (79%), Positives = 194/215 (90%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VIS+KPFLILTVLSSTLLWL+SLI+LSG+WR FLPLK
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +  WWP+A+L+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QIALAG
Sbjct: 61  ANVWWPYAVLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLL 215
           GYA+GN  DQ  VPV+HL AGM+    FA   C++
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVI 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807826|ref|NP_001241927.1| uncharacterized protein LOC100794637 [Glycine max] gi|255642888|gb|ACU22669.1| unknown [Glycine max]

 Score =  345 bits (886), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 197/233 (84%), Gaps = 2/233 (0%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAG+GYAL+ALGPSLS+FV+VISKKPFLILTVLSSTLLWLISLIVLSGIWR  LPL 
Sbjct: 1   MTVAAGMGYALLALGPSLSIFVSVISKKPFLILTVLSSTLLWLISLIVLSGIWRGVLPLN 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +T WWPF +LI SSV FQE LR+  WK+YKRL+D LDAFADR+ KP L LTDKM IALAG
Sbjct: 61  TTAWWPFGILIFSSVAFQEALRLFSWKIYKRLQDMLDAFADRISKPHLHLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VDRC ++PFFL+SAIIALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDRCSKVPFFLLSAIIALAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNC 233
           GY+EGN  DQYFVP+VH+VAGMV     A   C  +    LL ++ ++ L +C
Sbjct: 181 GYSEGNKVDQYFVPIVHVVAGMVTLVNLAPGGC--AVGIPLLYLVAILTLIHC 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538907|ref|XP_003537942.1| PREDICTED: gamma-secretase subunit APH1-like [Glycine max]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 175/233 (75%), Positives = 195/233 (83%), Gaps = 2/233 (0%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VISKKPFLILTVLSSTLLWLISLIVLSGIWR  LPL 
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISKKPFLILTVLSSTLLWLISLIVLSGIWRGVLPLS 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +T  WPF +LI SSV FQE LR+ FWK+YKRLED LDAFADRV KP L LTDKM IALAG
Sbjct: 61  TTASWPFGILIFSSVAFQEALRLFFWKIYKRLEDMLDAFADRVSKPHLHLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VDRC ++PFFL+SAIIALAFV IHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDRCSRVPFFLLSAIIALAFVIIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNC 233
           GY EGN  DQYFVP+VH+VAGMV     A   C  +    LL ++ ++ L +C
Sbjct: 181 GYTEGNKVDQYFVPIVHVVAGMVTLVNLAPGGC--AVGIPLLYLVAILTLIHC 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493548|gb|AFK34840.1| unknown [Medicago truncatula]

 Score =  342 bits (878), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 166/213 (77%), Positives = 189/213 (88%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYALIALGPSLS+FV+VISKKPFLILT+L+STLLWLISLI LSGIWRAFLP  
Sbjct: 1   MTVAAGIGYALIALGPSLSIFVSVISKKPFLILTLLASTLLWLISLIALSGIWRAFLPFN 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
            T  WP+A+LI+SSV FQE LR+ FWK++KRLED LDAFADRV KP LFLTDKM IALAG
Sbjct: 61  PTAVWPYAILILSSVAFQEALRLFFWKIFKRLEDMLDAFADRVSKPHLFLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VD+C ++PFFL+SA+IALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDKCSKIPFFLLSAVIALAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFC 213
           GYAEGN  D+YFVP+VH++AGM+     A   C
Sbjct: 181 GYAEGNKVDRYFVPIVHVIAGMLTMVNLAPGGC 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647968|gb|ACU24441.1| unknown [Glycine max]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 174/233 (74%), Positives = 194/233 (83%), Gaps = 2/233 (0%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYAL+ALGPSLSLFV+VISKKPFLILTVLSSTLLWLISLIVLSGIWR  LPL 
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISKKPFLILTVLSSTLLWLISLIVLSGIWRGVLPLS 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
           +T  WPF +LI SSV FQE LR+ FWK+YKRLED LDAFADRV KP L LTDKM IALAG
Sbjct: 61  TTASWPFGILIFSSVAFQEALRLFFWKIYKRLEDMLDAFADRVSKPHLHLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VDRC ++PFFL+ AIIALAFV IHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDRCSRVPFFLLFAIIALAFVIIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNC 233
           GY EGN  DQYFVP+VH+VAGMV     A   C +   F  L ++ ++ L +C
Sbjct: 181 GYTEGNKVDQYFVPIVHVVAGMVTLVNLAPGGCAVGIPF--LYLVAILTLIHC 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075164|gb|ACJ85942.1| unknown [Medicago truncatula]

 Score =  340 bits (871), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 165/213 (77%), Positives = 188/213 (88%)

Query: 1   MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
           MTVAAGIGYALIALGPSLS+FV+VISKKPFLILT+ +STLLWLISLI LSGIWRAFLP  
Sbjct: 1   MTVAAGIGYALIALGPSLSIFVSVISKKPFLILTLPASTLLWLISLIALSGIWRAFLPFN 60

Query: 61  STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
            T  WP+A+LI+SSV FQE LR+ FWK++KRLED LDAFADRV KP LFLTDKM IALAG
Sbjct: 61  PTAVWPYAILILSSVAFQEALRLFFWKIFKRLEDMLDAFADRVSKPHLFLTDKMLIALAG 120

Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
           GLGHGVAHAVFFC+SLLTPAFGPAT++VD+C ++PFFL+SA+IALAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDKCSKIPFFLLSAVIALAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFC 213
           GYAEGN  D+YFVP+VH++AGM+     A   C
Sbjct: 181 GYAEGNKVDRYFVPIVHVIAGMLTMVNLAPGGC 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2061265	250	AT2G31440 [Arabidopsis thalian	0.902	0.924	0.562	2e-63
FB|FBgn0031458	238	aph-1 "anterior pharynx defect	0.691	0.743	0.248	4.2e-06
DICTYBASE|DDB_G0267976	328	aph1 "gamma-secretase subunit	0.253	0.198	0.338	6.7e-05
UNIPROTKB|E1C2N9	211	APH1A "Uncharacterized protein	0.492	0.597	0.257	0.00055

TAIR|locus:2061265 AT2G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 131/233 (56%), Positives = 153/233 (65%)

Query:     1 MTVXXXXXXXXXXXXPSLSLFVAVISKKPFXXXXXXXXXXXXXXXXXXXXXXXRAFLPLK 60
             MTV            PSLSLFV+VIS+KPF                       R FLPLK
Sbjct:     1 MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query:    61 STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIXXXX 120
             +  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QI    
Sbjct:    61 ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query:   121 XXXXXXXXXXFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
                       FFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF 
Sbjct:   121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query:   181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNC 233
             GYA+GN  DQ  VPV+HL AGM+    FA   C++     LL ++  + L +C
Sbjct:   181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIG--VPLLYLVASLTLVHC 231

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

FB|FBgn0031458 aph-1 "anterior pharynx defective 1" [Drosophila melanogaster (taxid:7227)]

 Score = 124 (48.7 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 47/189 (24%), Positives = 72/189 (38%)

Query:    16 PSLSLFVAVISKKPFXXXXXXXXXXXXXXXXXXXXXXXRAFLPLKSTTWWPFALLIISSV 75
             P  +LFV  I+  P                         A +PLK       A  ++ SV
Sbjct:    16 PPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWY-ALIPLKEF----LAFGVVFSV 70

Query:    76 GFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIXXXXXXXXXXXXXXFFCL- 134
              FQE  R + +++ +  E  L A A+        +TD   I               F L 
Sbjct:    71 CFQEAFRYIIYRILRSTEQGLHAVAEDTR-----VTDNKHILAYVSGLGFGIISGMFALV 125

Query:   135 SLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVP 194
             ++L    GP T  +    ++ FF+ SA  AL+ + +HTF  VI FN +   N     +V 
Sbjct:   126 NVLADMSGPGTMGLKGGTEL-FFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHIGYVV 184

Query:   195 VVHLVAGMV 203
               HL   ++
Sbjct:   185 FSHLFVSLI 193

GO:0005886 "plasma membrane" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0004175 "endopeptidase activity" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0267976 aph1 "gamma-secretase subunit Aph-1" [Dictyostelium discoideum (taxid:44689)]

 Score = 103 (41.3 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query:   135 SLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVP 194
             S+L  + GP T +   CP +  F++S+II L    +H    V+AF GY         FV 
Sbjct:   216 SILWESTGPGTLFSPACPSVNLFMLSSIITLFMTLLHVVYNVLAFQGYRSKKYHLVAFVI 275

Query:   195 VVHLV 199
             + H V
Sbjct:   276 ITHFV 280

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

UNIPROTKB|E1C2N9 APH1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 106 (42.4 bits), Expect = 0.00055, P = 0.00055
 Identities = 34/132 (25%), Positives = 60/132 (45%)

Query:    71 IISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIXXXXXXXXXXXXXX 130
             ++ SV  QE  R L++K+ ++  + L A ++    P        Q+              
Sbjct:    76 VMFSVLLQEAFRFLYYKLLRKAIEGLVALSEDGCSP----ISIQQMAYVAGVGFGLMSGA 131

Query:   131 FFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQ 190
             F  ++LL  A GP T  +    Q+ +FL SA + +  + +HTF  ++ F+G       + 
Sbjct:   132 FSMINLLADALGPGTVGIHGDSQL-YFLTSAFMTMVLIFLHTFWGILFFHGCENRRWWEI 190

Query:   191 YFVPVVHL-VAG 201
               V V+HL V+G
Sbjct:   191 VAVVVMHLAVSG 202


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.334   0.144   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      256       207   0.00099  111 3  11 21  0.46    31
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  170 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.26u 0.23s 16.49t   Elapsed:  00:00:00
  Total cpu time:  16.26u 0.23s 16.49t   Elapsed:  00:00:00
  Start:  Thu May  9 21:35:36 2013   End:  Thu May  9 21:35:36 2013

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9G7	APH1_ARATH	No assigned EC number	0.8	0.8398	0.86	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
pfam06105	237	pfam06105, Aph-1, Aph-1 protein	3e-64

>gnl|CDD|218900 pfam06105, Aph-1, Aph-1 protein

 Score =  200 bits (510), Expect = 3e-64
 Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 9/201 (4%)

Query: 2   TVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKS 61
           TVA   G   IA GP+L+LF+  I++ P  ++ +++ +  WL+SL++ S +W   +PL+ 
Sbjct: 1   TVAVFFGCTFIAFGPALALFLLTIARDPLRVILLIAGSFFWLVSLLISSLVWFIVVPLRD 60

Query: 62  TTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGG 121
                 A  I+ SV FQE  R  ++++ K+ E+ LD+ AD+   P     DK Q+A   G
Sbjct: 61  K----LAFGILFSVLFQELFRYAYYRLLKKAEEGLDSIADQGQIP----IDKHQLAYVSG 112

Query: 122 LGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNG 181
           LG GV   VF  +++L  + GP T  +       FFL SA I LA + +HTF  VI F+G
Sbjct: 113 LGFGVISGVFSLVNILADSSGPGTVGLHG-DSQYFFLTSAFITLAIILLHTFWGVIFFDG 171

Query: 182 YAEGNTTDQYFVPVVHLVAGM 202
             +   +   FV V HLV   
Sbjct: 172 CEKRKYSHIAFVVVSHLVVSG 192

This family consists of several eukaryotic Aph-1 proteins.Gamma-secretase catalyzes the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signaling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity. Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
PF06105	238	Aph-1: Aph-1 protein; InterPro: IPR009294 This fam	100.0
KOG3972	252	consensus Predicted membrane protein [Function unk	100.0
PF10086	223	DUF2324: Putative membrane peptidase family (DUF23	98.12
PF13367	191	PrsW-protease: Protease prsW family	90.69
COG4377	258	Predicted membrane protein [Function unknown]	83.87

>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins

Probab=100.00  E-value=2.7e-82  Score=569.90  Aligned_cols=218  Identities=36%  Similarity=0.625  Sum_probs=209.8

Q ss_pred             cchhhHhHHHHHHhhHHHHhhHhhcCCchhHHHHHHHHHHHHHHHHHHHhHHhhcccCCCCCcchhHHHHHHHHHHHHHH
Q 025213            2 TVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLIISSVGFQEGL   81 (256)
Q Consensus         2 t~~~~fGc~fIAfGP~laLF~~tIa~~P~lIIiliagAFfWLvSLLlsSliW~i~~pl~~~~~~~l~f~v~~SV~iQE~f   81 (256)
                      |+++++||+||||||++++|++||||||+|||++++||||||+|+|++|++|++++|++|+    +++++++||++||.+
T Consensus         1 T~~~f~Gc~liafgP~lalf~~tIa~~p~liIi~i~~aFfWLvSLLlss~iW~i~~pl~~~----l~f~v~~sV~~QE~f   76 (238)
T PF06105_consen    1 TLAVFFGCALIAFGPALALFVFTIARDPQLIIILIAGAFFWLVSLLLSSLIWFIVVPLRDN----LAFGVLFSVLIQEAF   76 (238)
T ss_pred             ChHHHHHHHHHHHCHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc----hhHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999999999999999999988    568999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCccccchhhHHHHhhccchhhHHHHHHHhhcccccccCceeccCCCCCchHHHHHH
Q 025213           82 RVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISA  161 (256)
Q Consensus        82 R~~~y~llkkae~gL~~i~~~~~~~~~~~~~~~~lA~v~GlGfGimsg~f~~in~Lads~GPGt~g~~~c~~~~ffl~SA  161 (256)
                      |++|||++||||||||+++||+++|    +|||++|||+|+|||+|||+|+++|+|+|++||||+|+|+||++|||++||
T Consensus        77 R~~~~~ll~kae~gL~~i~~~~~~~----~~~~~lA~v~GlGfGimsg~f~~~n~Lads~GPGt~g~~~c~~~~ffl~SA  152 (238)
T PF06105_consen   77 RYLYYKLLKKAEEGLQSIAEDGTSP----ISRHQLAYVSGLGFGIMSGVFSFVNILADSLGPGTVGIHGCPSMPFFLTSA  152 (238)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCC----CccceeeehhccchHHHHHHHHHHhhhhhccCCceeccCCCCCccchHHHH
Confidence            9999999999999999999998776    789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccCceeeEEehhhHHHHHHHHhhhc--CCCCceeEehHHHHHHHHHH
Q 025213          162 IIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSA--FARCFCLLSQKFSLLRILFL  227 (256)
Q Consensus       162 ~~tl~~iLLH~fW~VI~F~g~~~k~~~~~~~V~~~Hl~vS~lTllN--~~~~gC~vsi~i~l~~i~~~  227 (256)
                      ++|+++++||+|||||+|||||||||+++++|+++|+++|++|++|  .+.+||+.+.|+-.++....
T Consensus       153 ~~tl~~~lLH~fW~VI~F~g~~~~~~~~i~~V~~~Hl~vs~lTllN~~~~~~~~v~~~~il~~~~~~a  220 (238)
T PF06105_consen  153 FMTLAFILLHTFWMVIFFDGCEKKNWWLIAFVVISHLLVSCLTLLNSPLYSGGCVPSYPILVLTGAWA  220 (238)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCceEEEehHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999  56789999999877776655

Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane

>KOG3972 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=2.7e-75  Score=514.73  Aligned_cols=206  Identities=26%  Similarity=0.403  Sum_probs=195.3

Q ss_pred             CcchhhHhHHHHHHhhHHHHhhHhhcCCchhHHHHHHHHHHHHHHHHHHHhHHhhc-ccCCCCCcchhHHHHHHHHHHHH
Q 025213            1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAF-LPLKSTTWWPFALLIISSVGFQE   79 (256)
Q Consensus         1 Mt~~~~fGc~fIAfGP~laLF~~tIa~~P~lIIiliagAFfWLvSLLlsSliW~i~-~pl~~~~~~~l~f~v~~SV~iQE   79 (256)
                      ||++++|||+|+||||++|+|++|||+||.|||++++||||||+|||+||++|++. .|++|+    ++|+..+||.+||
T Consensus         1 M~~~~ffgC~fiaFgPa~ALf~~tIA~dPvRIIiliagaFFWLvSLLisSl~W~~l~i~l~~~----lifg~~vsV~~qE   76 (252)
T KOG3972|consen    1 MGAAVFFGCTFIAFGPAFALFVFTIAHDPVRIIILIAGAFFWLVSLLISSLVWFGLSIVLPDD----LIFGATVSVIAQE   76 (252)
T ss_pred             CCcceeeeeEEeeeCcchhhheeeecCCCeeehhhHHHHHHHHHHHHHHHHHHHheEccchhh----hhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998 566554    7899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCccccchhhHHHHhhccchhhHHHHHHHhhcccccccCceeccCCCCCchHHHH
Q 025213           80 GLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLI  159 (256)
Q Consensus        80 ~fR~~~y~llkkae~gL~~i~~~~~~~~~~~~~~~~lA~v~GlGfGimsg~f~~in~Lads~GPGt~g~~~c~~~~ffl~  159 (256)
                      .||++|||++|||||||++++||++.    +++||++|||+|+|||+|||+|+.+|.|+|+.||||+|+||++++ ||+.
T Consensus        77 ~fR~ayyklLkka~~GL~si~~d~~~----~~s~h~lAyVsGLgfGIiSgvFs~vN~lad~sGPGtvGl~g~s~~-~fl~  151 (252)
T KOG3972|consen   77 LFRFAYYKLLKKAQEGLNSITEDGRL----HNSRHMLAYVSGLGFGIISGVFSTVNALADFSGPGTVGLHGDSPY-FFLT  151 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccCCC----chhHHHHHHHhccchhHHHHHHHHHHHHHhccCCCeeccCCCcch-hhHH
Confidence            99999999999999999999998554    489999999999999999999999999999999999999999996 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCceeeEEehhhHHHHHHHHhhhcCCCCceeEeh
Q 025213          160 SAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLLSQ  217 (256)
Q Consensus       160 SA~~tl~~iLLH~fW~VI~F~g~~~k~~~~~~~V~~~Hl~vS~lTllN~~~~gC~vsi  217 (256)
                      ||++|+.++|+|+||+|++||+|||+||+....|+.+|+++|.+|++|++  |-.+..
T Consensus       152 sa~~al~iiLlHvfW~ivffdac~k~~~~~l~~vv~SHLlvs~lt~lns~--~~y~~~  207 (252)
T KOG3972|consen  152 SAFSALLIILLHVFWGIVFFDACEKIAYVPLGAVVVSHLLVSFLTFLNSR--GFYVLV  207 (252)
T ss_pred             HHHHHHHHHHHHHHHHheeehhhhhhchhhhHHHHHHHHHHHHHHHhCcc--chhHHH
Confidence            99999999999999999999999999999999999999999999999995  444444

>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.12  E-value=1.9e-05  Score=71.11  Aligned_cols=169  Identities=18%  Similarity=0.153  Sum_probs=115.3

Q ss_pred             hhHHHHhhHhhcCCchhHHHHHHHHHHHHHHHHHHHhHH--hhcccCCCC------CcchhHHHHHHHHHHHHHHHHHHH
Q 025213           15 GPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW--RAFLPLKST------TWWPFALLIISSVGFQEGLRVLFW   86 (256)
Q Consensus        15 GP~laLF~~tIa~~P~lIIiliagAFfWLvSLLlsSliW--~i~~pl~~~------~~~~l~f~v~~SV~iQE~fR~~~y   86 (256)
                      -|.. ++...=.|+.......+.|+..|.++..+.-...  ....+.++.      ++.-...+-+.+=.+||..||.-+
T Consensus         5 ~pi~-l~~~~rk~~~~~~~~f~~Ga~~F~v~~~vle~~l~~~~~~~~~~~~~~~~~~~l~~ly~~l~AGiFEE~gR~i~~   83 (223)
T PF10086_consen    5 LPIL-LFIYFRKRKKISWKPFILGALVFFVFAQVLELPLHQIVLSPNADGLIWTSNPILYALYGGLMAGIFEETGRYIGF   83 (223)
T ss_pred             HHHH-HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555 5666667888889999999999988777665433  222333222      211234456778889999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCccccchhhHHHHhhccchhhHHHHHH----Hhhccccc--ccCceecc------------
Q 025213           87 KVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFF----CLSLLTPA--FGPATFYV------------  148 (256)
Q Consensus        87 ~llkkae~gL~~i~~~~~~~~~~~~~~~~lA~v~GlGfGimsg~f~----~in~Lads--~GPGt~g~------------  148 (256)
                      |.++|-++..+                 .-+..-|+|||.+=+++-    .+|.+.-+  .-.|+...            
T Consensus        84 k~l~kk~~~~~-----------------~~al~~GlGhGg~Eailvg~~~~l~~~v~~~~in~g~~~~~~~~~~~~~~~~  146 (223)
T PF10086_consen   84 KYLLKKRRDWS-----------------DDALAYGLGHGGIEAILVGGLSLLNNLVLAMMINSGSLDQLLEQPAELLEQI  146 (223)
T ss_pred             HHHHHcccchh-----------------hHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhhHHHHH
Confidence            99886432111                 137788999998755443    44544222  11222211            


Q ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccCceeeEEehhhHHHHHHH
Q 025213          149 ----DRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGM  202 (256)
Q Consensus       149 ----~~c~~~~ffl~SA~~tl~~iLLH~fW~VI~F~g~~~k~~~~~~~V~~~Hl~vS~  202 (256)
                          ..-|. ..++.+.+....=+.+|+..+++.+.|.++||++.....+..|.++=.
T Consensus       147 ~~~l~~~~~-~~~~l~~~ERi~Al~~hi~lSvlV~~av~~~k~~~l~~AIllHaliD~  203 (223)
T PF10086_consen  147 QSALASLPP-WSFLLGGVERIFALLFHIGLSVLVWYAVRQRKKWYLVLAILLHALIDF  203 (223)
T ss_pred             HHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence                11233 378899999999999999999999999999999888888899988766

However, they are predicted to be integral membrane proteins (with several transmembrane segments).

>PF13367 PrsW-protease: Protease prsW family

Probab=90.69  E-value=7.6  Score=33.24  Aligned_cols=93  Identities=17%  Similarity=0.070  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCccccchhhHHHHhhccchhhHHHHHHHhhcccccccCce
Q 025213           67 FALLIISSVGFQEGLRVLFWKVYKR-LEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFGPAT  145 (256)
Q Consensus        67 l~f~v~~SV~iQE~fR~~~y~llkk-ae~gL~~i~~~~~~~~~~~~~~~~lA~v~GlGfGimsg~f~~in~Lads~GPGt  145 (256)
                      .....+.+=...|..++.-..++.. .++..++           +.|....+.++|+||+.+=-+....|-..|.-+.  
T Consensus        43 ~~~~~~~a~~~EE~~K~l~v~~~~~~~~~~~~~-----------~~d~~~~g~a~GlGFa~~En~~Y~~~~~~~~~~~--  109 (191)
T PF13367_consen   43 LWGAFLIAPLVEEFAKLLPVLLLLLLRRRRFDE-----------PMDGLVYGAAVGLGFAIMENILYILNAAEDNGGS--  109 (191)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhhHhhcC-----------cchhhhhhhHHHHHHHHHHHHHHHHHhhhcccch--
Confidence            4456777888999999877666552 3332211           1345788999999999999999988876444332  


Q ss_pred             eccCCCCCchHHHHHHHHHHHH-HHHHHHHHHHhhc
Q 025213          146 FYVDRCPQMPFFLISAIIALAF-VTIHTFSMVIAFN  180 (256)
Q Consensus       146 ~g~~~c~~~~ffl~SA~~tl~~-iLLH~fW~VI~F~  180 (256)
                            .+ .-+. .++.-... ...|..|+.++.-
T Consensus       110 ------~~-~~~~-~~~~R~~~~~~~H~~~t~i~g~  137 (191)
T PF13367_consen  110 ------VQ-GGLS-TAILRGITSVPGHALFTAIFGY  137 (191)
T ss_pred             ------hh-hHHH-HHHHHHHHHHhHHHHHHHHHHH
Confidence                  11 1111 12332222 5799999999743

>COG4377 Predicted membrane protein [Function unknown]

Probab=83.87  E-value=18  Score=33.50  Aligned_cols=153  Identities=17%  Similarity=0.152  Sum_probs=87.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccccchhhHHHHhhccchhhHHHHHHHhhccccccc
Q 025213           63 TWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAGGLGHGVAHAVFFCLSLLTPAFG  142 (256)
Q Consensus        63 ~~~~l~f~v~~SV~iQE~fR~~~y~llkkae~gL~~i~~~~~~~~~~~~~~~~lA~v~GlGfGimsg~f~~in~Lads~G  142 (256)
                      |.+--+.|.+..=++.|.-|+.++|.+.| + -++                .--+.+-|+|||..-+.+-.+.-+..-.=
T Consensus        76 Pl~y~IYG~lMAg~FEE~gR~l~~rfl~k-R-~~~----------------~Ad~lAyglGHgGlEail~g~~S~~~l~i  137 (258)
T COG4377          76 PLIYIIYGLLMAGFFEETGRLLFFRFLEK-R-SLE----------------KADALAYGLGHGGLEAILLGLTSLLNLYI  137 (258)
T ss_pred             CcHHHHHHHHHHHHHHHHhHHHHHHHHHh-C-ccc----------------chhHHHHhcccccHHHHHHHHHhHhhHHH
Confidence            33334567899999999999999999876 1 111                11245668999877665543322211111


Q ss_pred             CceeccCCCCCchHHHHHH------------------------HHHHHHHHHHHHHHHHhhcccccCceeeEEehhhHHH
Q 025213          143 PATFYVDRCPQMPFFLISA------------------------IIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHL  198 (256)
Q Consensus       143 PGt~g~~~c~~~~ffl~SA------------------------~~tl~~iLLH~fW~VI~F~g~~~k~~~~~~~V~~~Hl  198 (256)
                      =+.---.|+||.  .+.|.                        +--..=+..+..-++..+++.++||+.........|-
T Consensus       138 ~~~Avn~g~~~~--L~~sGaeal~~~~~~ll~~lS~W~~~g~~~ERI~A~~vQ~~Ltl~V~~AVrqrrpi~Ll~ai~LHA  215 (258)
T COG4377         138 VLSAVNTGNPQV--LMQSGAEALSENMLKLLQSLSVWQIYGLGFERILALGVQLLLTLWVYQAVRQRRPIYLLAAIGLHA  215 (258)
T ss_pred             hhhhhccCCHHH--HHHhhHHHhhHHHHHHHhCCcHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            111112233332  11211                        1111223344555677899999999999999899997


Q ss_pred             HHHHHhhhcCCCCceeEehHHHHHHHHHHHHHhccccCcc
Q 025213          199 VAGMVVKSAFARCFCLLSQKFSLLRILFLIVLKNCQLSPE  238 (256)
Q Consensus       199 ~vS~lTllN~~~~gC~vsi~i~l~~i~~~~~~~~~~~~~~  238 (256)
                      +.-.=.-+-+  -| .++-|+..=+|+-++.+-.|--.||
T Consensus       216 lfdlpa~LyQ--vg-~~~~~v~vevi~AL~lal~~yw~~~  252 (258)
T COG4377         216 LFDLPASLYQ--VG-WLTNPVLVEVILALELALVAYWTKE  252 (258)
T ss_pred             HhcCCHHHHH--cc-cccchHHHHHHHHHHHHHHhcCcHh
Confidence            6433222222  23 3344667777777777777766665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00