Citrus Sinensis ID: 025242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MSEQGESTPTVAAAPAITTRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTILICDRKGSSLFHGSHLILDFS
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEcccEccccHHHHHcccHHHHHHHHEEEEcccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mseqgestptvaaapaittRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVsarehpaaaTGVALTAGllfmrgprrflfrhtfgrlrsEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTILIcdrkgsslfhgshlildfs
Flexible Loop (DISEMBL)
mseqgestptvaaapaittrtkDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKnvnelnlsgelmkkESKKLLERAALAEKEMIrgetelknagnqVQRLAKQVYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTILICDRKgsslfhgshlildfs
Low Complexity Region (SEG)
MSEQGEStptvaaapaittrtKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPaaatgvaltagllFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNlsgelmkkeskklleRAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTILICDRKGSSLFHGSHLILDFS
Disordered region (IsUnstruct)
*****************************************************STYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRA*********************************************VQRLAKQVYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTILICDRKGSSLFHGSHLIL***
Disordered Region (DISOPRED)
*********************KDAKEWVEDLQRSVIQ************************DFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAM***********************************M*****************************GIVGCIFFSSIMIVV***************NMQDKIFLTILICDRKGSSLFHGSHLILDFS
Disordered Region (DISEMBL)
***********AAAPAITTRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTILICDRKGSSLFHGSHLILDFS
Disordered Region (DISPRO)
*************APAITTRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTILICDRKGSSLFHGSHLILDFS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEQGESTPTVAAAPAITTRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTILICDRKGSSLFHGSHLILDFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
255564796	265	conserved hypothetical protein [Ricinus	0.690	0.664	0.664	3e-63
449452634	241	PREDICTED: uncharacterized protein LOC10	0.678	0.717	0.664	3e-61
449452636	217	PREDICTED: uncharacterized protein LOC10	0.678	0.797	0.664	5e-61
297803456	263	hypothetical protein ARALYDRAFT_913923 [	0.772	0.749	0.525	2e-59
225435822	246	PREDICTED: uncharacterized protein LOC10	0.756	0.784	0.623	2e-58
224056923	239	predicted protein [Populus trichocarpa]	0.686	0.732	0.628	4e-57
30687213	263	uncharacterized protein [Arabidopsis tha	0.772	0.749	0.534	4e-55
357475067	266	hypothetical protein MTR_4g083250 [Medic	0.615	0.590	0.611	1e-48
356576943	230	PREDICTED: uncharacterized protein LOC10	0.654	0.726	0.574	2e-48
255638282	230	unknown [Glycine max]	0.654	0.726	0.568	6e-48

>gi|255564796|ref|XP_002523392.1| conserved hypothetical protein [Ricinus communis] gi|223537342|gb|EEF38971.1| conserved hypothetical protein [Ricinus communis]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 146/176 (82%)

Query: 22  KDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK 81
           K ++ WVEDLQR+VI+SKDSAIRSARS   NSS+ L++LQD V   +S ++TYED+FF+K
Sbjct: 44  KGSENWVEDLQRTVIESKDSAIRSARSLHQNSSSRLRSLQDHVPQALSLFRTYEDSFFNK 103

Query: 82  VKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELN 141
           +K+EL+ AREHP    GVA+TAG L MRGPRRFLFRHTFGR +SEEA F++ EKNV ELN
Sbjct: 104 IKEELMIAREHPVEVVGVAVTAGFLLMRGPRRFLFRHTFGRFQSEEARFLKTEKNVKELN 163

Query: 142 LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197
           LS +LMK ES+KLLERA+LAEK+M  G TEL +AG+Q+QRLAK +YKVETQ AG++
Sbjct: 164 LSVDLMKNESRKLLERASLAEKDMKHGHTELMDAGSQIQRLAKSIYKVETQVAGLM 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452634|ref|XP_004144064.1| PREDICTED: uncharacterized protein LOC101216418 isoform 1 [Cucumis sativus] gi|449493570|ref|XP_004159354.1| PREDICTED: uncharacterized LOC101216418 isoform 1 [Cucumis sativus]

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/173 (66%), Positives = 141/173 (81%)

Query: 28  VEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELV 87
            EDLQR+V+QSKDSAIRSARSFQ  SS+++++LQDFV    SQ++TYED FF K+ DEL 
Sbjct: 26  AEDLQRTVVQSKDSAIRSARSFQQASSSHIRSLQDFVPQATSQFKTYEDTFFRKLTDELK 85

Query: 88  SAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELM 147
            AREHPAA  GVA+TAGLL MRGPRRFLFRHT GR ++EEA F++AEK+V ELNLS +LM
Sbjct: 86  IAREHPAATIGVAVTAGLLIMRGPRRFLFRHTLGRFQTEEASFLKAEKHVKELNLSVDLM 145

Query: 148 KKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200
           K ESKKLLERAALAEK+M  G  EL NAG+Q+QRL++ +YK E QAA ++  +
Sbjct: 146 KNESKKLLERAALAEKDMKYGHNELMNAGSQIQRLSRSIYKAEAQAADLMDGL 198

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452636|ref|XP_004144065.1| PREDICTED: uncharacterized protein LOC101216418 isoform 2 [Cucumis sativus] gi|449493572|ref|XP_004159355.1| PREDICTED: uncharacterized LOC101216418 isoform 2 [Cucumis sativus]

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 115/173 (66%), Positives = 141/173 (81%)

Query: 28  VEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELV 87
            EDLQR+V+QSKDSAIRSARSFQ  SS+++++LQDFV    SQ++TYED FF K+ DEL 
Sbjct: 26  AEDLQRTVVQSKDSAIRSARSFQQASSSHIRSLQDFVPQATSQFKTYEDTFFRKLTDELK 85

Query: 88  SAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELM 147
            AREHPAA  GVA+TAGLL MRGPRRFLFRHT GR ++EEA F++AEK+V ELNLS +LM
Sbjct: 86  IAREHPAATIGVAVTAGLLIMRGPRRFLFRHTLGRFQTEEASFLKAEKHVKELNLSVDLM 145

Query: 148 KKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200
           K ESKKLLERAALAEK+M  G  EL NAG+Q+QRL++ +YK E QAA ++  +
Sbjct: 146 KNESKKLLERAALAEKDMKYGHNELMNAGSQIQRLSRSIYKAEAQAADLMDGL 198

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803456|ref|XP_002869612.1| hypothetical protein ARALYDRAFT_913923 [Arabidopsis lyrata subsp. lyrata] gi|297315448|gb|EFH45871.1| hypothetical protein ARALYDRAFT_913923 [Arabidopsis lyrata subsp. lyrata]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/217 (52%), Positives = 157/217 (72%), Gaps = 20/217 (9%)

Query: 1   MSEQGESTPTVAAAPAITTRT--------------------KDAKEWVEDLQRSVIQSKD 40
           MSE   +  T  +APA+ + T                    + A++WV+D QR+V +S D
Sbjct: 1   MSETEATGATDDSAPAVASETAADATVNTAIGVVESVEGAIEGAEKWVDDFQRTVKESTD 60

Query: 41  SAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVA 100
           SA+RSARS + NS++  +++QDF+ H ++QY+TYE+AFFSKV +EL+ A+EHPAA  G+ 
Sbjct: 61  SAMRSARSLRENSTSQFRSIQDFIPHALTQYKTYENAFFSKVTEELIYAKEHPAATVGIG 120

Query: 101 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAAL 160
           + AGL+ MRGPRRFLFRHT GR +SEEA F++AEK+V ELN+S +LMKKES+KLLER AL
Sbjct: 121 VAAGLVLMRGPRRFLFRHTLGRFQSEEAQFLKAEKHVQELNMSVDLMKKESRKLLERTAL 180

Query: 161 AEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197
           AEK+M RG +EL N+GN + RLAK V+KVE +AA ++
Sbjct: 181 AEKDMKRGLSELMNSGNDIHRLAKSVHKVECEAADLM 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435822|ref|XP_002285769.1| PREDICTED: uncharacterized protein LOC100250144 [Vitis vinifera] gi|297746514|emb|CBI16570.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/199 (62%), Positives = 151/199 (75%), Gaps = 6/199 (3%)

Query: 5   GESTPTVAAAPAI--TTRTKDAKEW----VEDLQRSVIQSKDSAIRSARSFQHNSSTYLQ 58
            E+TP+ A APA   +   +  K W     EDLQR+V +S DSAIRSA S Q NSS++L+
Sbjct: 2   AEATPSSAPAPADGESISQQQQKPWHISFAEDLQRTVSESADSAIRSALSLQQNSSSHLR 61

Query: 59  TLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRH 118
           +LQ+F+    SQY+TYEDAFF KVKDEL SA+EHP     VA+TAGL+F+RGPRRFLF H
Sbjct: 62  SLQEFIPQMESQYRTYEDAFFKKVKDELTSAKEHPVVVGAVAVTAGLIFLRGPRRFLFHH 121

Query: 119 TFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQ 178
           T GR +SEEA FVRAEKNV ELNLS +LMK ES+KLLERAALAEK+M  G TEL N G+Q
Sbjct: 122 TLGRFQSEEAQFVRAEKNVKELNLSVDLMKNESRKLLERAALAEKDMKCGHTELMNTGSQ 181

Query: 179 VQRLAKQVYKVETQAAGIV 197
           ++RLAK V+KVE QAA ++
Sbjct: 182 LKRLAKTVFKVEAQAADLM 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056923|ref|XP_002299091.1| predicted protein [Populus trichocarpa] gi|222846349|gb|EEE83896.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 142/175 (81%)

Query: 26  EWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDE 85
           E +EDLQR+V +SKDSAIRSA SFQ +SS++L++ QD V   +S++ +YE+ FFSKVK+E
Sbjct: 22  EVMEDLQRTVKESKDSAIRSALSFQQSSSSHLRSFQDHVPEAISKFNSYENTFFSKVKEE 81

Query: 86  LVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGE 145
           L++A++HPAAA G+ LTAGL  MRGPRRFLFR+T GR +SEEA F+RAEKNV E + S +
Sbjct: 82  LLTAKDHPAAAIGLTLTAGLFLMRGPRRFLFRNTLGRFQSEEAQFLRAEKNVKEFSFSVD 141

Query: 146 LMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200
           LMKKES+KLLERA+LAEKEM  G TEL + G Q+QRLAK VYKVET+ A ++  +
Sbjct: 142 LMKKESRKLLERASLAEKEMKNGHTELLDTGIQIQRLAKSVYKVETKTADLMDGL 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687213|ref|NP_194371.2| uncharacterized protein [Arabidopsis thaliana] gi|27754660|gb|AAO22774.1| unknown protein [Arabidopsis thaliana] gi|28394053|gb|AAO42434.1| unknown protein [Arabidopsis thaliana] gi|332659795|gb|AEE85195.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 116/217 (53%), Positives = 157/217 (72%), Gaps = 20/217 (9%)

Query: 1   MSEQGESTPTVAAAPAITTRT--------------------KDAKEWVEDLQRSVIQSKD 40
           MSE   +  T  +APAI T T                    + A++WV DLQR+V +SKD
Sbjct: 1   MSETEATGVTDDSAPAIETETVSDAMEHTAIGVVESVEGAIEGAEKWVGDLQRTVKESKD 60

Query: 41  SAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVA 100
           +A+RSARS + NS++  +++QDF+ H ++QY+TYE+AFFSKV DEL+ A+EHPAAA G+ 
Sbjct: 61  TAMRSARSLRENSTSQFRSIQDFIPHALTQYKTYENAFFSKVTDELIYAKEHPAAAIGIG 120

Query: 101 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAAL 160
           + A L+ MRGPRRFLFR+T GR +SEEA F++AEK+V ELN+S +LMKKES+KLLER AL
Sbjct: 121 VAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKHVQELNMSVDLMKKESRKLLERTAL 180

Query: 161 AEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197
           AEK+M RG +EL N+GN + RLAK V+K E +AA ++
Sbjct: 181 AEKDMKRGLSELMNSGNDIHRLAKSVHKAECEAADLM 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475067|ref|XP_003607819.1| hypothetical protein MTR_4g083250 [Medicago truncatula] gi|355508874|gb|AES90016.1| hypothetical protein MTR_4g083250 [Medicago truncatula] gi|388497698|gb|AFK36915.1| unknown [Medicago truncatula]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/157 (61%), Positives = 121/157 (77%)

Query: 41  SAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVA 100
           SAI SAR+ QHNS+T+ +T Q+F+   VSQY+TYEDAFF+KVKD ++ ARE+PA   G+A
Sbjct: 64  SAIESARTVQHNSTTHFRTFQNFLPGAVSQYRTYEDAFFNKVKDGVMVARENPAIGVGLA 123

Query: 101 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAAL 160
           ++  LL MRGPRRFLFRHT GR +SEEA +  AEKNV +LNLS +L+KKES KLL+R AL
Sbjct: 124 VSTALLVMRGPRRFLFRHTLGRFQSEEARYASAEKNVKDLNLSVDLLKKESIKLLQRTAL 183

Query: 161 AEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197
           AEKEM  G +EL N G Q+QRLAK  YK E +A  ++
Sbjct: 184 AEKEMKYGHSELMNTGAQLQRLAKSSYKAEARATDLI 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576943|ref|XP_003556589.1| PREDICTED: uncharacterized protein LOC100780119 [Glycine max]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 129/174 (74%), Gaps = 7/174 (4%)

Query: 29  EDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVS 88
           E+LQRS IQS       AR+ QH+SST+ +  Q+F+   VSQY+TYEDAF +KVKD L+ 
Sbjct: 23  ENLQRSAIQS-------ARTVQHSSSTHFRAFQNFLPEAVSQYRTYEDAFVNKVKDGLMI 75

Query: 89  AREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMK 148
           A+E+PA + GVA++A LL MR PRRFLFRHT GR +SEEA + R EKNV +LNLS +L+K
Sbjct: 76  AKENPAVSAGVAISAALLAMRAPRRFLFRHTLGRFQSEEARYARIEKNVKDLNLSVDLLK 135

Query: 149 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFF 202
           KE+ KLL+R  LAEKEM  G TEL +AG Q Q+LAK  YKVET+AA ++  + +
Sbjct: 136 KENAKLLQRTTLAEKEMKYGHTELVSAGTQFQQLAKSAYKVETRAADLLDKLRY 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638282|gb|ACU19454.1| unknown [Glycine max]

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 128/174 (73%), Gaps = 7/174 (4%)

Query: 29  EDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVS 88
           E+LQRS IQS       AR+ QH+SST+ +  Q+F+   VSQY+TYEDAF +KVKD L+ 
Sbjct: 23  ENLQRSAIQS-------ARTVQHSSSTHFRAFQNFLPEAVSQYRTYEDAFVNKVKDGLMI 75

Query: 89  AREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMK 148
           A+E+PA + GVA++  LL MR PRRFLFRHT GR +SEEA + R EKNV +LNLS +L+K
Sbjct: 76  AKENPAVSAGVAISVALLAMRAPRRFLFRHTLGRFQSEEARYARIEKNVKDLNLSVDLLK 135

Query: 149 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFF 202
           KE+ KLL+R  LAEKEM  G TEL +AG Q Q+LAK  YKVET+AA ++  + +
Sbjct: 136 KENAKLLQRTTLAEKEMKYGHTELVSAGTQFQQLAKSAYKVETRAADLLDKLRY 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2131473	263	AT4G26410 "AT4G26410" [Arabido	0.682	0.661	0.511	2.2e-43
TAIR|locus:2055578	272	AT2G45060 "AT2G45060" [Arabido	0.686	0.643	0.295	8.6e-17

TAIR|locus:2131473 AT4G26410 "AT4G26410" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 89/174 (51%), Positives = 121/174 (69%)

Query:    24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVK 83
             A++WV DLQR+V +SKD+A+RSARS + NS++  +++QDF+ H ++QY+TYE+AFFSKV 
Sbjct:    44 AEKWVGDLQRTVKESKDTAMRSARSLRENSTSQFRSIQDFIPHALTQYKTYENAFFSKVT 103

Query:    84 DELVSAREHPXXXXXXXXXXXXXFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNXX 143
             DEL+ A+EHP              MRGPRRFLFR+T GR +SEEA F++AEK+V ELN  
Sbjct:   104 DELIYAKEHPAAAIGIGVAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKHVQELNMS 163

Query:   144 XXXXXXXXXXXXXRAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197
                          R ALAEK+M RG +EL N+GN + RLAK V+K E +AA ++
Sbjct:   164 VDLMKKESRKLLERTALAEKDMKRGLSELMNSGNDIHRLAKSVHKAECEAADLM 217

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2055578 AT2G45060 "AT2G45060" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 55/186 (29%), Positives = 86/186 (46%)

Query:    22 KDAKEWVEDL-------QRSVIQSKDSAIRS--ARSFQHNSSTYLQTLQ--DFVLHGVSQ 70
             ++A  W++D        Q+++ ++ DS I +  AR  Q   ++   T Q  D +    S+
Sbjct:    40 ENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRDIASE 99

Query:    71 YQTYEDAFFSKVKDELVSAREHPXXXXXXXXXXXXXFMRGPRRFLFRHTFGRLRSEEAMF 130
             Y  YE   F K+KD +  A  HP              ++  RRF++ +T     SEEA+ 
Sbjct:   100 YNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSEEALL 159

Query:   131 VRAEKNVNELNXXXXXXXXXXXXXXXRAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 190
              RA+  V EL                 A +AE+E IRG  +L+ AG Q++      YK+E
Sbjct:   160 SRADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSAYKIE 219

Query:   191 TQAAGI 196
              QAAG+
Sbjct:   220 KQAAGL 225


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      255       213   0.00084  112 3  11 22  0.47    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.27u 0.11s 16.38t   Elapsed:  00:00:01
  Total cpu time:  16.27u 0.11s 16.38t   Elapsed:  00:00:01
  Start:  Thu May  9 23:15:33 2013   End:  Thu May  9 23:15:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	97.32
PRK10404	101	hypothetical protein; Provisional	96.49
PRK10132	108	hypothetical protein; Provisional	95.41
COG4575	104	ElaB Uncharacterized conserved protein [Function u	95.31
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.83
PRK11637	428	AmiB activator; Provisional	91.28
PRK09039	343	hypothetical protein; Validated	88.28
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	84.47
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.87
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	82.2
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	81.65
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	80.84

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=97.32  E-value=0.0021  Score=49.23  Aligned_cols=72  Identities=21%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             HHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHH----HHHhhCchhhHHHHHHHh
Q 025242           29 EDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDEL----VSAREHPAAATGVALTAG  104 (255)
Q Consensus        29 e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv----~vA~ehP~ia~g~a~~ag  104 (255)
                      ++++..+.++.|.+-+.+..+++.-...+.++++.+.+       +-+.+-.+.++++    ..+++||+-+.|+|+++|
T Consensus        12 ~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG   84 (94)
T PF05957_consen   12 ADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED-------AADQAREQAREAAEQTEDYVRENPWQSVGIAAGVG   84 (94)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence            33444444444444444444554444444444444444       3333444444333    378999999999999999


Q ss_pred             Hhh
Q 025242          105 LLF  107 (255)
Q Consensus       105 lLl  107 (255)
                      ||+
T Consensus        85 ~ll   87 (94)
T PF05957_consen   85 FLL   87 (94)
T ss_pred             HHH
Confidence            986

>PRK10404 hypothetical protein; Provisional

Probab=96.49  E-value=0.019  Score=46.04  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=53.2

Q ss_pred             cchHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHH----HHHHhhCchhhHHH
Q 025242           24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDE----LVSAREHPAAATGV   99 (255)
Q Consensus        24 ~~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKeg----v~vA~ehP~ia~g~   99 (255)
                      ...-+++++.-+.++.+.+-+.+.++++.-...+..+++.+.+..       +.+..+.|++    -..+++||+-+.|+
T Consensus        14 l~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~-------~~~~~~~k~aa~~td~yV~e~Pw~avGi   86 (101)
T PRK10404         14 LTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQAS-------DSYYYRAKQAVYRADDYVHEKPWQGIGV   86 (101)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            445566677777777777777777777766666666665555444       4444444444    45889999999999


Q ss_pred             HHHHhHhh
Q 025242          100 ALTAGLLF  107 (255)
Q Consensus       100 a~~aglLl  107 (255)
                      ++++||++
T Consensus        87 aagvGlll   94 (101)
T PRK10404         87 GAAVGLVL   94 (101)
T ss_pred             HHHHHHHH
Confidence            99999875

>PRK10132 hypothetical protein; Provisional

Probab=95.41  E-value=0.11  Score=42.33  Aligned_cols=75  Identities=15%  Similarity=0.241  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH----HHhhCchhhHHHH
Q 025242           25 KEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELV----SAREHPAAATGVA  100 (255)
Q Consensus        25 ~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~----vA~ehP~ia~g~a  100 (255)
                      +.-+++++..+.++.+.+-+-+..+++.=...+...+       ..+...++. ..+.|+++.    .+++||+-++|+|
T Consensus        22 ~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar-------~~l~~~~~~-~~~~~~a~~~~~~~V~~~Pw~svgia   93 (108)
T PRK10132         22 NQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETR-------ARMHGRTRV-QQAARDAVGCADTFVRERPWCSVGTA   93 (108)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------HHHhhhHHH-HHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            3445555555555555555555555544333444444       344434442 233444443    6778999999999


Q ss_pred             HHHhHhh
Q 025242          101 LTAGLLF  107 (255)
Q Consensus       101 ~~aglLl  107 (255)
                      +++||++
T Consensus        94 agvG~ll  100 (108)
T PRK10132         94 AAVGIFI  100 (108)
T ss_pred             HHHHHHH
Confidence            9988875

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=0.043  Score=45.14  Aligned_cols=77  Identities=25%  Similarity=0.291  Sum_probs=51.0

Q ss_pred             cchHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH----HHhhCchhhHHH
Q 025242           24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELV----SAREHPAAATGV   99 (255)
Q Consensus        24 ~~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~----vA~ehP~ia~g~   99 (255)
                      ...-++++..-+.++-+-|-+-+.+|+..--+-+.++++-+.+..       +......|+++.    .+.+||+=++|+
T Consensus        17 l~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~PWq~VGv   89 (104)
T COG4575          17 LQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENPWQGVGV   89 (104)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            334455555555566555666666677655555555555555444       566666666664    789999999999


Q ss_pred             HHHHhHhh
Q 025242          100 ALTAGLLF  107 (255)
Q Consensus       100 a~~aglLl  107 (255)
                      ++++|||+
T Consensus        90 aAaVGlll   97 (104)
T COG4575          90 AAAVGLLL   97 (104)
T ss_pred             HHHHHHHH
Confidence            99999875

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.83  E-value=3.7  Score=34.42  Aligned_cols=105  Identities=10%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             chhhHHHHHHHhHhhcccchhHHHHHhhhc-ccch-------HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025242           93 PAAATGVALTAGLLFMRGPRRFLFRHTFGR-LRSE-------EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE  164 (255)
Q Consensus        93 P~ia~g~a~~aglLlLrgPRRfLyr~TlGR-FqSE-------EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeE  164 (255)
                      +.+.+++..++|++++..--.++....... .+.+       +.-+...++...++...++.+.+....+......-+++
T Consensus        38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~  117 (191)
T PF04156_consen   38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKED  117 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555556666655544444333221 1111       11333444444444444444444444444444444444


Q ss_pred             HhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 025242          165 MIRGETELKNAGNQVQRLAKQVYKVETQAAGIV  197 (255)
Q Consensus       165 m~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~  197 (255)
                      +...+..++.....++.+-.+...+++....|.
T Consensus       118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555666666666555555555554

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK11637 AmiB activator; Provisional

Probab=91.28  E-value=3.3  Score=39.35  Aligned_cols=11  Identities=18%  Similarity=0.075  Sum_probs=7.4

Q ss_pred             hCchhhHHHHH
Q 025242           91 EHPAAATGVAL  101 (255)
Q Consensus        91 ehP~ia~g~a~  101 (255)
                      -+|.+++.+.+
T Consensus        20 ~~~~~~~~ll~   30 (428)
T PRK11637         20 IRPILYASVLS   30 (428)
T ss_pred             hhhHHHHHHHH
Confidence            35888886644

>PRK09039 hypothetical protein; Validated

Probab=88.28  E-value=5.4  Score=37.69  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=66.3

Q ss_pred             hcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH-HHHHHHhhhhh
Q 025242          121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ-VYKVETQAAGI  196 (255)
Q Consensus       121 GRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s-vYKiE~~AagL  196 (255)
                      ..+..+++..+.+...|.-|++-|+.+++.+..|+.....+|.+-.-=+.++..-+..|+..+-. +-.+++-...+
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            67888999999999999999999999999999999999999999988889999999999988744 55555554444

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=84.47  E-value=15  Score=32.77  Aligned_cols=93  Identities=15%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             hhcccchhHHH---------HHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhH
Q 025242          106 LFMRGPRRFLF---------RHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAG  176 (255)
Q Consensus       106 LlLrgPRRfLy---------r~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG  176 (255)
                      ..+|.|.+++|         +.-.+.+..-...+...+.++..|.+.++.+.....+....+.....+-.+-...-..-.
T Consensus        14 ~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~   93 (264)
T PF06008_consen   14 GAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE   93 (264)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999998         333444455556788888888888888888888888887777776666666555555556


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh
Q 025242          177 NQVQRLAKQVYKVETQAAGIVG  198 (255)
Q Consensus       177 ~QIq~L~~svYKiE~~AagL~D  198 (255)
                      ..|+.+...|-.+-.++.+|=.
T Consensus        94 ~~i~~l~~~i~~l~~~~~~l~~  115 (264)
T PF06008_consen   94 QFIQNLQDNIQELIEQVESLNE  115 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCc
Confidence            6666666666655555555433

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.87  E-value=11  Score=34.74  Aligned_cols=83  Identities=12%  Similarity=0.194  Sum_probs=49.3

Q ss_pred             HHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHh--HHHHHHHHHHHHHHHHhh
Q 025242          116 FRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA--GNQVQRLAKQVYKVETQA  193 (255)
Q Consensus       116 yr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~a--G~QIq~L~~svYKiE~~A  193 (255)
                      ++..+-..+   +.+.++-+.+..+...++.++++...++....-+++.+.+++.+|.+.  -+++..|-..++..+.+.
T Consensus        29 ~~~~l~k~~---~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~  105 (239)
T COG1579          29 IRKALKKAK---AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI  105 (239)
T ss_pred             hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            344444443   445666666666677777777666666666666666666666666332  345555666666666666


Q ss_pred             hhhhhhhc
Q 025242          194 AGIVGCIF  201 (255)
Q Consensus       194 agL~D~LR  201 (255)
                      ..|.|.|.
T Consensus       106 ~~le~el~  113 (239)
T COG1579         106 NSLEDELA  113 (239)
T ss_pred             HHHHHHHH
Confidence            55555543

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=82.20  E-value=15  Score=28.08  Aligned_cols=49  Identities=20%  Similarity=0.198  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCchhhHHHHHHHhHhhccc
Q 025242           59 TLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRG  110 (255)
Q Consensus        59 ~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g~a~~aglLlLrg  110 (255)
                      ++.+..+.+..+++......=..|++==..+   =++++|+++.+|+|+=||
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~s---vgiAagvG~llG~Ll~RR   94 (94)
T PF05957_consen   46 RAEDAADQAREQAREAAEQTEDYVRENPWQS---VGIAAGVGFLLGLLLRRR   94 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHChHHH---HHHHHHHHHHHHHHHhCC
Confidence            3444555555555555555555554432222   257889999999998654

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=81.65  E-value=19  Score=28.80  Aligned_cols=90  Identities=11%  Similarity=0.157  Sum_probs=46.8

Q ss_pred             HHhhC-chhhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhh--HHHHHHHHHHHHHHHHH
Q 025242           88 SAREH-PAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELM--KKESKKLLERAALAEKE  164 (255)
Q Consensus        88 vA~eh-P~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdll--k~Es~KL~eRaalAEeE  164 (255)
                      +-+.| |++.++++++.+++.+.=.|+|-   +--++..=++-+..-+.++..+.+.++.+  +.+..+|.-+.+--+.+
T Consensus         4 ~~~~~w~ii~a~~~~~~~~~~~~l~~~~a---~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~   80 (106)
T PF10805_consen    4 FIKKNWGIIWAVFGIAGGIFWLWLRRTYA---KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGE   80 (106)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence            34456 78888877777766655444432   22233222333444456666666666666  66666665555444444


Q ss_pred             HhccHHHHHHhHHHHH
Q 025242          165 MIRGETELKNAGNQVQ  180 (255)
Q Consensus       165 m~RGrtkLr~aG~QIq  180 (255)
                      ++.=...|+.-.++..
T Consensus        81 ~~~l~~~l~~v~~~~~   96 (106)
T PF10805_consen   81 LKELSARLQGVSHQLD   96 (106)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4433333433333333

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.84  E-value=17  Score=32.29  Aligned_cols=60  Identities=27%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH
Q 025242          128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY  187 (255)
Q Consensus       128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svY  187 (255)
                      .....++.++.+....+..+..++.+..+|+..+|.....=...|+..+..|+++--+.-
T Consensus       106 ~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~  165 (237)
T PF00261_consen  106 RRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE  165 (237)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence            445666677777777777777777777777777777777777777777777776655443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 49/239 (20%), Positives = 77/239 (32%), Gaps = 90/239 (37%)

Query: 23  DAKEWVEDLQRSVI---------QSKDSAIRSARSF----QHNSSTYLQTLQDFVLHGVS 69
           D K+ V+D+ +S++          SKD+   + R F               Q FV     
Sbjct: 34  DCKD-VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV----QKFV--EEV 86

Query: 70  QYQTYEDAFF-SKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEA 128
               Y+  F  S +K E       P+  T              R ++ +    RL ++  
Sbjct: 87  LRINYK--FLMSPIKTEQRQ----PSMMT--------------RMYIEQRD--RLYNDNQ 124

Query: 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYK 188
           +F  A+ NV+          +   KL  R AL          EL+ A N +      +  
Sbjct: 125 VF--AKYNVSR--------LQPYLKL--RQAL---------LELRPAKNVL------ID- 156

Query: 189 VETQAAGIVGCIFFSSIMIVVGKTVVGN--LSDMVDNFNMQDKIF-LTILICDRKGSSL 244
                 G++G           GKT V             M  KIF L +  C+   + L
Sbjct: 157 ------GVLGS----------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	81.56
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	80.13

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=81.56  E-value=15  Score=30.70  Aligned_cols=83  Identities=16%  Similarity=0.155  Sum_probs=70.5

Q ss_pred             hhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH
Q 025242          112 RRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET  191 (255)
Q Consensus       112 RRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~  191 (255)
                      |-=-|-..+.-+.   ..+..|+.+.+.---+|.-+.+++.+|++++..+.+.++.=.-.|.++-.+|.++....|-.++
T Consensus        71 rEd~yEeqIk~L~---~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~  147 (155)
T 2efr_A           71 KEDKYEEEIKVLS---DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLEN  147 (155)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            4444555555442   5788888888888889999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhh
Q 025242          192 QAAGIV  197 (255)
Q Consensus       192 ~AagL~  197 (255)
                      ..+.|+
T Consensus       148 ~~~~~~  153 (155)
T 2efr_A          148 EVARLK  153 (155)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988876

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=80.13  E-value=9.1  Score=31.41  Aligned_cols=61  Identities=23%  Similarity=0.288  Sum_probs=54.3

Q ss_pred             HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Q 025242          128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYK  188 (255)
Q Consensus       128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYK  188 (255)
                      .+...|++++.+....+..+-.++.+..+|+..||.....=...|+..|..|++|--+--|
T Consensus        66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eek  126 (147)
T 2b9c_A           66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEE  126 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence            4556889999999999999999999999999999999999999999999999998765433

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1k4ta1	72	Eukaryotic DNA topoisomerase I, dispensable insert	81.16

>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Eukaryotic DNA topoisomerase I, dispensable insert domain
family: Eukaryotic DNA topoisomerase I, dispensable insert domain
domain: Eukaryotic DNA topoisomerase I, dispensable insert domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.16  E-value=4.1  Score=28.97  Aligned_cols=60  Identities=22%  Similarity=0.217  Sum_probs=38.2

Q ss_pred             hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh-ccHHHHHH----hHHHHHHHHHHHHHHHHhhhh
Q 025242          136 NVNELNLSGELMKKESKKLLERAALAEKEMI-RGETELKN----AGNQVQRLAKQVYKVETQAAG  195 (255)
Q Consensus       136 ~V~eLr~svdllk~Es~KL~eRaalAEeEm~-RGrtkLr~----aG~QIq~L~~svYKiE~~Aag  195 (255)
                      .++-|+..|+.-+..+.-...-.-.|..+++ +|-.+.+.    -.++++||-.+..|.|-||++
T Consensus         3 sMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLevqaTD   67 (72)
T d1k4ta1           3 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATD   67 (72)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            4445555555544444444444444444444 56555444    678999999999999999986