Citrus Sinensis ID: 025246

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK
cccccccHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccEEEcccc
cHHHHHHHHHHHHHcHHHcccccccccccHHHccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHcccc
masvcaspavaaisspssqksrsvagatkasflggkklklrkngatagtrsvsvsaaaadpnrplwfpgstppewldgslpgdfgfdplglEIVHCRWAMLGAAGIFIPELLTKlgilntpswytageleyftdtTTLFIVEMIFIGWaegrrwadiikpgcvntdpifpnnkltgtdvgypgglwfdplgwgsgspekVKELRTKEIKNGRLAMLAVMGAWFQHiytgtgpidnliahladpghatvfaaftpk
masvcaspavaaisspssqksrsvagatkasflggkklklrkngatagtrsvsvsaaaadpnrplWFPGSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK
MasvcaspavaaisspssQKSRSVAGATKASFlggkklklrkngATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK
****************************************************************LWFPGSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG******ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF***
*A**************************************************************LWFPGSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK
****************************KASFLGGKKLKL***************AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK
*********************************************************AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
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MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query255 2.2.26 [Sep-21-2011]
P13869270 Chlorophyll a-b binding p N/A no 1.0 0.944 0.807 1e-125
P10708270 Chlorophyll a-b binding p N/A no 1.0 0.944 0.788 1e-122
P27521251 Chlorophyll a-b binding p no no 0.933 0.948 0.428 1e-52
Q9SQL2252 Chlorophyll a-b binding p N/A no 0.898 0.908 0.454 1e-51
P27522273 Chlorophyll a-b binding p N/A no 0.796 0.743 0.412 8e-40
Q36718231 Chlorophyll a-b binding p N/A no 0.745 0.822 0.440 5e-39
Q32904275 Chlorophyll a-b binding p N/A no 0.796 0.738 0.401 6e-39
Q01667241 Chlorophyll a-b binding p no no 0.643 0.680 0.4 1e-29
Q9SDM1245 Chlorophyll a-b binding p N/A no 0.819 0.853 0.355 2e-29
P12360246 Chlorophyll a-b binding p N/A no 0.670 0.695 0.382 8e-29
>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1 Back     alignment and function desciption
 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/270 (80%), Positives = 238/270 (88%), Gaps = 15/270 (5%)

Query: 1   MASVCASPAVAAI--SSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
           MAS CAS  +AA+  SSPSSQK+ S+ GATKASFLGGK+L++ K  A  G+RSV+VSA A
Sbjct: 1   MASACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVA 60

Query: 59  ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
           ADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGL             E+VH RWAMLGAAG
Sbjct: 61  ADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAG 120

Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
           IFIPE LTK+G+LNTPSWYTAGE EYFTDTTTLF++E++ IGWAEGRRWADIIKPGCVNT
Sbjct: 121 IFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNT 180

Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
           DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH 240

Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
           IYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct: 241 IYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Petunia hybrida (taxid: 4102)
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1 Back     alignment and function description
>sp|P27521|CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1 Back     alignment and function description
>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1 Back     alignment and function description
>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1 Back     alignment and function description
>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1 Back     alignment and function description
>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1 Back     alignment and function description
>sp|Q01667|CAB6_ARATH Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1 Back     alignment and function description
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
225425420271 PREDICTED: chlorophyll a-b binding prote 1.0 0.940 0.852 1e-126
115766270 RecName: Full=Chlorophyll a-b binding pr 1.0 0.944 0.807 1e-123
224057740272 light-harvesting complex I protein Lhca2 0.996 0.933 0.805 1e-121
115765270 RecName: Full=Chlorophyll a-b binding pr 1.0 0.944 0.788 1e-120
356559462270 PREDICTED: chlorophyll a-b binding prote 0.945 0.892 0.818 1e-117
356520198270 PREDICTED: chlorophyll a-b binding prote 0.945 0.892 0.814 1e-117
118487538269 unknown [Populus trichocarpa] 0.996 0.944 0.814 1e-116
356559464281 PREDICTED: chlorophyll a-b binding prote 0.933 0.846 0.820 1e-115
356520200281 PREDICTED: chlorophyll a-b binding prote 0.933 0.846 0.816 1e-115
255547714270 chlorophyll A/B binding protein, putativ 0.996 0.940 0.797 1e-115
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis vinifera] gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/271 (85%), Positives = 242/271 (89%), Gaps = 16/271 (5%)

Query: 1   MASVCASPAVAAIS--SPSSQKSRSVAGATKASFLGGKKLKLRKNGA-TAGTRSVSVSAA 57
           MASVCAS A+AA++  SPSSQK+ SV GATKASFLGGK+L L+K  A  AGTRS +VSAA
Sbjct: 1   MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVSAA 60

Query: 58  AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
           AADPNRPLWFPGSTPP WLDGSLPGDFGFDPLGL             EIVHCRWAMLGAA
Sbjct: 61  AADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAA 120

Query: 105 GIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 164
           GIFIPE LTK+GILNTPSWYTAGELEYFTD TTLFIVEMIFIGWAEGRRWADIIKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVN 180

Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 225 HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
            IYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 241 AIYTGTGPIDNLFAHLADPGHATIFAAFTPK 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCI type II CAB; Flags: Precursor gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida] gi|226259|prf||1503272A chlorophyll binding protein Back     alignment and taxonomy information
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa] gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic; AltName: Full=LHCI type II CAB-7; Flags: Precursor gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum] gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum] gi|226546|prf||1601518A chlorophyll a/b binding protein II Back     alignment and taxonomy information
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform 1 [Glycine max] gi|255645717|gb|ACU23352.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
TAIR|locus:2082767257 LHCA2 "photosystem I light har 0.796 0.789 0.861 9.8e-103
TAIR|locus:2202150270 Lhca6 "photosystem I light har 0.807 0.762 0.609 7e-70
TAIR|locus:2146544173 AT5G28450 [Arabidopsis thalian 0.419 0.618 0.880 5.1e-51
TAIR|locus:2079117251 LHCA4 "light-harvesting chloro 0.768 0.780 0.465 6.9e-47
TAIR|locus:2200868273 LHCA3 "photosystem I light har 0.662 0.619 0.421 3.2e-41
TAIR|locus:2825741256 Lhca5 "photosystem I light har 0.745 0.742 0.435 2.3e-39
TAIR|locus:2149765290 LHCB4.1 "light harvesting comp 0.584 0.513 0.351 2e-30
TAIR|locus:2097608287 LHCB4.2 "light harvesting comp 0.584 0.519 0.345 1.1e-29
TAIR|locus:2082717241 LHCA1 "photosystem I light har 0.666 0.705 0.407 3.1e-28
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.717 0.685 0.397 7.3e-27
TAIR|locus:2082767 LHCA2 "photosystem I light harvesting complex gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 186/216 (86%), Positives = 194/216 (89%)

Query:    53 SVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWA 99
             SV A AADP+RP+WFPGSTPPEWLDGSLPGDFGFDPLGL             EIVHCRWA
Sbjct:    42 SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWA 101

Query:   100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
             MLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD TTLF+VE+I IGWAEGRRWADIIK
Sbjct:   102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIK 161

Query:   160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
             PG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVM
Sbjct:   162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221

Query:   220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
             GAWFQHIYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct:   222 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0009768 "photosynthesis, light harvesting in photosystem I" evidence=TAS
GO:0009782 "photosystem I antenna complex" evidence=TAS
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
TAIR|locus:2202150 Lhca6 "photosystem I light harvesting complex gene 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146544 AT5G28450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079117 LHCA4 "light-harvesting chlorophyll-protein complex I subunit A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200868 LHCA3 "photosystem I light harvesting complex gene 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825741 Lhca5 "photosystem I light harvesting complex gene 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149765 LHCB4.1 "light harvesting complex photosystem II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097608 LHCB4.2 "light harvesting complex photosystem II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082717 LHCA1 "photosystem I light harvesting complex gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P10708CB12_SOLLCNo assigned EC number0.78881.00.9444N/Ano
P13869CB12_PETHYNo assigned EC number0.80741.00.9444N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 1e-107
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 4e-73
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 6e-73
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 3e-64
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 5e-54
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 7e-45
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 1e-38
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 2e-37
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 1e-36
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 1e-34
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 3e-34
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 4e-29
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 5e-06
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 3e-05
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 1e-04
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 2e-04
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information 
 Score =  311 bits (798), Expect = e-107
 Identities = 149/268 (55%), Positives = 180/268 (67%), Gaps = 18/268 (6%)

Query: 1   MASVCASPAVAAISSPSSQKSRS--VAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
           MA   AS A+++++  + +  +         +    G ++K+R N    G  SV      
Sbjct: 1   MALAIASSALSSLTLSTRRVPQKALRRPIVASQSGTGGRMKVRLNATKGGVSSV---CEP 57

Query: 59  ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
             P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL             E++H RWAML  AG
Sbjct: 58  LPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAG 117

Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
           I IPE L +LG +   SWY AG  EYF D TTLF+V+M+ +GWAEGRRWAD+IKPGCV+ 
Sbjct: 118 ILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDI 177

Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
           +P  PN      DVGYPGGLWFDP+ WG GSPE V  LRTKEIKNGRLAMLA +G  FQ 
Sbjct: 178 EPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA 237

Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFT 253
           +YTG GPI+NL+AHLADPGH  VF+AFT
Sbjct: 238 VYTGEGPIENLMAHLADPGHCNVFSAFT 265

Length = 267
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 255
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.97
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.63
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.61
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.6
PLN00147 252 light-harvesting complex I chlorophyll-a/b binding 99.56
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.51
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.49
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.48
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.47
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.44
PLN00048 262 photosystem I light harvesting chlorophyll a/b bin 99.44
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.42
PLN00187 286 photosystem II light-harvesting complex II protein 99.4
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.35
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.13
PHA0233735 putative high light inducible protein 98.2
PLN00084214 photosystem II subunit S (PsbS); Provisional 98.14
PLN00014250 light-harvesting-like protein 3; Provisional 97.65
PHA0233735 putative high light inducible protein 96.93
PLN00014250 light-harvesting-like protein 3; Provisional 95.64
PLN00084214 photosystem II subunit S (PsbS); Provisional 94.0
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-71  Score=502.44  Aligned_cols=204  Identities=68%  Similarity=1.309  Sum_probs=189.0

Q ss_pred             ccccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCC
Q 025246           52 VSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGIL  118 (255)
Q Consensus        52 ~~~~~~~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~  118 (255)
                      ++.++.+|+++|++|||+.++|+||||++|||||||||||             |||||||||||++|+++||+++..|++
T Consensus        51 ~~~~~~~~~~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~  130 (267)
T PLN00098         51 VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFI  130 (267)
T ss_pred             cccccccCCCCccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcc
Confidence            4456677899999999999999999999999999999999             999999999999999999999988888


Q ss_pred             CCCcccccCccccccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChh
Q 025246          119 NTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE  198 (255)
Q Consensus       119 ~~~~w~~aG~~~~~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe  198 (255)
                      ..+.||++|..+|+.++.+++++|+++||++|.+||+++.++|+++.++.+++......|.+||||++||||||.++|++
T Consensus       131 ~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~  210 (267)
T PLN00098        131 ENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPE  210 (267)
T ss_pred             cccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHH
Confidence            77789999988888888889999999999999999999999999888887766554555678999999999999877999


Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeecccCC
Q 025246          199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK  255 (255)
Q Consensus       199 ~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~~~  255 (255)
                      +++++|+||||||||||+|++||++|+.+||++|++||.+||+||+|+||++++++|
T Consensus       211 ~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~  267 (267)
T PLN00098        211 PVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTSH  267 (267)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccCC
Confidence            999999999999999999999999999999999999999999999999999999875

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 1e-104
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 4e-91
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 6e-88
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 7e-48
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 2e-41
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 3e-40
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 1e-39
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 2e-30
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 3e-29
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 2e-27
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 6e-26
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 2e-25
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 2e-25
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 1e-24
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 2e-24
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 2e-21
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure 
Iteration: 1

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/251 (75%), Positives = 204/251 (81%), Gaps = 16/251 (6%)
Query: 19  QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDG 78
           QK+ S +G +KA F            + +  RS S     A+P+RPLWFPGSTPP WLDG
Sbjct: 21  QKNGSPSGTSKA-FLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDG 79
Query: 79  SLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 125
           SLPGDFGFDPLGL             E+VH RWAMLGAAGIFIPE LTKLGILNTPSWYT
Sbjct: 80  SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYT 139
Query: 126 AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 185
           AGE EYFTDTTTLFIVE++FIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDVGYPGGL
Sbjct: 140 AGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGL 199
Query: 186 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI-AHLADPG 244
           WFDPLGWGS SP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL  AHLADP 
Sbjct: 200 WFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP- 258
Query: 245 HATVFAAFTPK 255
           HAT+FAAFTPK
Sbjct: 259 HATIFAAFTPK 269
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 8e-70
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 1e-59
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 1e-52
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 2e-45
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 3e-43
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 9e-32
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
 Score =  214 bits (546), Expect = 8e-70
 Identities = 197/270 (72%), Positives = 219/270 (81%), Gaps = 16/270 (5%)

Query: 1   MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAA 59
           MAS CAS A+AA++  +    ++ + +  +    G+KLK+  + A+    RS S     A
Sbjct: 1   MASACASSAIAAVAISTPSSQKNGSPSGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVA 60

Query: 60  DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
           +P+RPLWFPGSTPP WLDGSLPGDFGFDPLGL             E+VH RWAMLGAAGI
Sbjct: 61  EPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGI 120

Query: 107 FIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
           FIPE LTKLGILNTPSWYTAGE EYFTDTTTLFIVE++FIGWAEGRRWADI+ PGCVNTD
Sbjct: 121 FIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTD 180

Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
           PIFPNNKLTGTDVGYPGGLWFDPLGWGS SP+K+KELRTKEIKNGRLAMLAVMGAWFQHI
Sbjct: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHI 240

Query: 227 YTGTGPIDNLIA-HLADPGHATVFAAFTPK 255
           YTGTGPIDNL A HLADP HAT+FAAFTPK
Sbjct: 241 YTGTGPIDNLFAAHLADP-HATIFAAFTPK 269
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.49
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.47
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.45
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.37
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.34
2wsc_3 276 LHCA3, type II chlorophyll A/B binding protein fro 99.25
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
Probab=100.00  E-value=1.9e-72  Score=509.37  Aligned_cols=252  Identities=82%  Similarity=1.422  Sum_probs=151.7

Q ss_pred             CccccccchhhhccCCc--cccccccccccccccccCccccccccCCCCCc-ccccccCCcCCCCCCCCCCCCCCCCCCC
Q 025246            1 MASVCASPAVAAISSPS--SQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLWFPGSTPPEWLD   77 (255)
Q Consensus         1 ~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~w~p~~~~P~~Ld   77 (255)
                      ||++|+|+++++++.+.  .++.....+++++ |+ +++++.++.++...+ ++.+++.++|++||++|+|+.++|+|||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~wlpg~~~P~~L~   78 (269)
T 2wsc_2            1 MASACASSAIAAVAISTPSSQKNGSPSGTSKA-FL-GRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLD   78 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CchhHhhHHHHHhhcCccccccccccccchhh-cc-ccccccccccccccccCCcceeecccCCCcccccCCCCCccccc
Confidence            78999998887764444  3455567777777 77 666665554432222 4555677789999999999999999999


Q ss_pred             CCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCCCCCcccccCccccccchhhHHHHHHH
Q 025246           78 GSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMI  144 (255)
Q Consensus        78 GslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~~w~~aG~~~~~a~~~~l~~~qi~  144 (255)
                      |++|||||||||||             |||||||||||++|+++||+++..|++..+.|+++|...|+.+.++++++|++
T Consensus        79 G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~  158 (269)
T 2wsc_2           79 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELV  158 (269)
T ss_dssp             ---------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTT
T ss_pred             CcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHH
Confidence            99999999999999             99999999999999999999999888877889999988889988899999999


Q ss_pred             HHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHh
Q 025246          145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ  224 (255)
Q Consensus       145 l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q  224 (255)
                      +||++|.+||+++.++|+++.++.|........|.+||||++||||||.++|+|+++++|.+||||||||||||+|+++|
T Consensus       159 liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~  238 (269)
T 2wsc_2          159 FIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ  238 (269)
T ss_dssp             HHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHH
T ss_pred             HHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence            99999999999999999999888887654455677899999999999987789999999999999999999999999999


Q ss_pred             hhcccCCchhHHH-HhhcCCcccceeecccCC
Q 025246          225 HIYTGTGPIDNLI-AHLADPGHATVFAAFTPK  255 (255)
Q Consensus       225 ~~vTG~gPlenL~-~hladP~~~n~~~~~~~~  255 (255)
                      +++||+||++||. +||+|| ||||+++++.|
T Consensus       239 ~~~tg~g~l~~l~~~HladP-~~n~~~~~~~~  269 (269)
T 2wsc_2          239 HIYTGTGPIDNLFAAHLADP-HATIFAAFTPK  269 (269)
T ss_dssp             HHHTTTCSSCCCSCCCCCCS-CCCCCSSSCCC
T ss_pred             HHhcCCChHHHHHHHHhcCc-ccchhhhccCC
Confidence            9999999999999 999999 99999999875
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 255
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 5e-54
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  171 bits (435), Expect = 5e-54
 Identities = 76/210 (36%), Positives = 98/210 (46%), Gaps = 19/210 (9%)

Query: 61  PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
           P+R  +        P +L G  PGD+G+D  GL             E++HCRWAMLGA G
Sbjct: 6   PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 65

Query: 106 IFIPELLTKLGI-LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWA-DIIKPGCV 163
              PELL + G+      W+ AG   +            +    +    WA  +I  G V
Sbjct: 66  CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 125

Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
               I         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + 
Sbjct: 126 EGYRIAGGPLGEVVDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 183

Query: 224 QHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
           Q I TG GP++NL  HLADP +   +   T
Sbjct: 184 QAIVTGKGPLENLADHLADPVNNNAWNFAT 213

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.54
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=6e-61  Score=420.90  Aligned_cols=182  Identities=42%  Similarity=0.808  Sum_probs=147.8

Q ss_pred             CCcCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCC-CC
Q 025246           56 AAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LN  119 (255)
Q Consensus        56 ~~~~~~~r~~w~p--~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~-~~  119 (255)
                      ++||++||++|+|  +.++|+|||||||||||||||||             |||||||||||++|++++|++++.+. ..
T Consensus         1 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~~~~   80 (218)
T d1rwta_           1 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG   80 (218)
T ss_dssp             CTTSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred             CCCCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCCCCC
Confidence            4799999999997  56899999999999999999999             99999999999999999999988765 44


Q ss_pred             CCcccccCcc-------ccc--------cchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCC
Q 025246          120 TPSWYTAGEL-------EYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG  184 (255)
Q Consensus       120 ~~~w~~aG~~-------~~~--------a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg  184 (255)
                      ...|++++..       .++        ......+.+++.+++.+|..|...-.         .     ....+..|||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~---------~-----~~~~~~~~~~g  146 (218)
T d1rwta_          81 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP---------L-----GEVVDPLYPGG  146 (218)
T ss_dssp             CCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBT---------T-----BCCSSSSCCCG
T ss_pred             CcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCC---------c-----ccccCCCCCCC
Confidence            4556653321       111        11222334456778999987754310         0     12235668888


Q ss_pred             cccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeeccc
Q 025246          185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT  253 (255)
Q Consensus       185 ~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~  253 (255)
                       +|||+++. +|+|+++++|+|||||||||||||+||++|+++||++|++||.+|++||+|+||++.++
T Consensus       147 -~fdPlg~~-~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~  213 (218)
T d1rwta_         147 -SFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFAT  213 (218)
T ss_dssp             -GGCTTCTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTT
T ss_pred             -CccccccC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHh
Confidence             49999997 59999999999999999999999999999999999999999999999999999997653
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure