Citrus Sinensis ID: 025303

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MATILMKVGFSITDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccccccccccccccccccccccccccHHHcccccEEcccccccccccccEcccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHcHHHHHHHHHccccccccEccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEccc
Coil and Loop (DISEMBL)
MATILMKVGFSitdgingqehahlkhipsstpltmgerleqnsqmELVGHSIvltsypytdpqhvgvitpyvpqamippqlygmhqarmplplemeeepvyvnAKQYRGILRRRQSRAKAELEKKVIKARkpylhesrHQHAMRRArgcggrflntkklndNAANSaekgmnsgadsskgstngtgsvdsSIVQQERAMEEnahmehtssnsnsnnRSLLSMYntssgsvegnflgqqrgsmqgngaprgalpvk
Flexible Loop (DISEMBL)
MATILMKVGFSITDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEkkvikarkpylhesrhqhamrrargcggrflnTKKLNDNAANSAEKgmnsgadsskgstngtgsvDSSIVQQERAMEENAhmehtssnsnsnnRSLLSMYNTSSGSVEGNFLGqqrgsmqgngaprgalpvk
Low Complexity Region (SEG)
MATILMKVGFSITDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARmplplemeeepVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTssnsnsnnrsllsMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Disordered region (IsUnstruct)
***ILMKVGFSITDGIN****************************ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPL****EPVYVNAKQYRGIL************************************************************************************************************************************************
Disordered Region (DISOPRED)
****************************************************VLTSYPYTDPQHVGVITPY************************EEEPVYVNAKQYRGILRRRQS*******************************************************************************************************************************************
Disordered Region (DISEMBL)
MATILMKVGFSITDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGIL**********LEKKVIKARKPYL***********ARGCGGRFLNTKKLNDNAAN***************************VQQERAME**************NNRSLLSMYNTSSGSVEGNFLGQQRGS**************
Disordered Region (DISPRO)
*ATILMKVGFSIT***********************ERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFL*****************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATILMKVGFSITDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q945M9	303	Nuclear transcription fac	yes	no	0.525	0.442	0.570	1e-34
Q9LXV5	272	Nuclear transcription fac	no	no	0.525	0.492	0.534	4e-33
Q84JP1	190	Nuclear transcription fac	no	no	0.505	0.678	0.537	1e-31
Q93ZH2	340	Nuclear transcription fac	no	no	0.407	0.305	0.588	2e-29
Q8VY64	198	Nuclear transcription fac	no	no	0.490	0.631	0.519	3e-29
Q9LNP6	328	Nuclear transcription fac	no	no	0.403	0.314	0.567	5e-29
Q9SYH4	308	Nuclear transcription fac	no	no	0.419	0.347	0.527	2e-26
Q9LVJ7	308	Nuclear transcription fac	no	no	0.423	0.350	0.533	6e-26
Q9M9X4	295	Nuclear transcription fac	no	no	0.525	0.454	0.436	5e-25
Q8LFU0	269	Nuclear transcription fac	no	no	0.431	0.408	0.458	4e-21

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 8/142 (5%)

Query: 46  ELVGHSI-VLTSYPYTDPQHVGVITPYV--PQAMIPPQLYGMHQARMPLPLEMEEEPVYV 102
           +LVGH++   +S PY DP + GV+  Y   P   +P    GM  +RMPLP EM +EPV+V
Sbjct: 113 QLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVP--YGGMPHSRMPLPPEMAQEPVFV 170

Query: 103 NAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDN 162
           NAKQY+ ILRRRQ+RAKAELEKK+IK+RKPYLHESRHQHAMRR RG GGRF   KK N  
Sbjct: 171 NAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTE 228

Query: 163 AAN-SAEKGMNSGADSSKGSTN 183
           A+   AE+  N     S  S+N
Sbjct: 229 ASKRKAEEKSNGHVTQSPSSSN 250

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 95/144 (65%), Gaps = 10/144 (6%)

Query: 46  ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAK 105
           ELVGH I     PY DP + G++  Y  Q +      GM + R  LPL+M +EPVYVNAK
Sbjct: 120 ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAK 179

Query: 106 QYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN 165
           QY GILRRR++RAKAELE+KVI+ RKPYLHESRH+HAMRRAR  GGRF    ++      
Sbjct: 180 QYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEV------ 233

Query: 166 SAEKGMNSGA-DSSKGS-TNGTGS 187
             E G ++G  D  +GS TN +GS
Sbjct: 234 --EAGEDAGGRDRERGSATNSSGS 255

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 91/132 (68%), Gaps = 3/132 (2%)

Query: 57  YPYTDPQHVGVITPYV-PQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQ 115
           YPY DP +  +  P   P   +  QL G+ Q  +PLP +  EEPV+VNAKQY GILRRRQ
Sbjct: 58  YPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQ 117

Query: 116 SRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA--EKGMNS 173
           SRA+ E + KVIK+RKPYLHESRH HA+RR RGCGGRFLN KK +++  +S+  EK   S
Sbjct: 118 SRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLS 177

Query: 174 GADSSKGSTNGT 185
              S+  +++GT
Sbjct: 178 AGKSAMAASSGT 189

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 79/107 (73%), Gaps = 3/107 (2%)

Query: 56  SYPYTDPQHVGVITP-YVPQA-MIPPQLYGMHQARMPLPLEMEE-EPVYVNAKQYRGILR 112
           S+ Y DP + G++   Y+PQA    PQ+  M   R+PLP E+ E +PV+VNAKQY  I+R
Sbjct: 134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMR 193

Query: 113 RRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKL 159
           RRQ RAK E + K+I+ARKPYLHESRH HA++R RG GGRFLNTKKL
Sbjct: 194 RRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKL 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 86/131 (65%), Gaps = 6/131 (4%)

Query: 57  YPYTDPQHVGVIT--PYVPQAM--IPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILR 112
           YPY DP +  V     Y+P     +  QL GM Q  +PL  +  EEPV+VNAKQY GILR
Sbjct: 53  YPYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILR 112

Query: 113 RRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMN 172
           RRQSRAK E   + IKA+KPY+HESRH HA+RR RGCGGRFLN KK  +N  +  E+   
Sbjct: 113 RRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK--ENGDHKEEEEAT 170

Query: 173 SGADSSKGSTN 183
           S  ++S+ S++
Sbjct: 171 SDENTSEASSS 181

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  127 bits (320), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 8/111 (7%)

Query: 56  SYPYTDPQHVGVITP--YVPQAMIPPQLYGMHQARMPLPLEM-EEEPVYVNAKQYRGILR 112
           S+ Y DP H G + P  Y+PQA I    +     R+PLP ++ E EPV+VNAKQ+  I+R
Sbjct: 132 SFHYADP-HFGGLMPAAYLPQATI----WNPQMTRVPLPFDLIENEPVFVNAKQFHAIMR 186

Query: 113 RRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNA 163
           RRQ RAK E + K+IKARKPYLHESRH HA++R RG GGRFLNTKKL ++ 
Sbjct: 187 RRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQEST 237

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 78/108 (72%), Gaps = 1/108 (0%)

Query: 72  VPQAMIPPQLYGMHQARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKAR 130
            P A+   ++ G+  +R+PLP  ++E EP++VNAKQY  ILRRR+ RAK E + K+IK R
Sbjct: 151 TPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCR 210

Query: 131 KPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSS 178
           KPYLHESRH HA++RARG GGRFLNTKKL +++ +     M +G + S
Sbjct: 211 KPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFS 258

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  117 bits (294), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 80/118 (67%), Gaps = 10/118 (8%)

Query: 51  SIVL----TSYPY---TDPQHVGVIT-PYVPQAMIP-PQLYGMHQARMPLPLEM-EEEPV 100
           S+VL     S+P      P   G ++ PY  Q  +  PQ+ G+  +RMPLP  + E EP+
Sbjct: 114 SVVLPIEAASWPLHGNVTPHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPI 173

Query: 101 YVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKK 158
           +VNAKQY+ ILRRR+ RAK E + K+IK RKPYLHESRH HA++R RG GGRFLNTKK
Sbjct: 174 FVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK 231

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 15/149 (10%)

Query: 53  VLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILR 112
           + T YPY + Q+ GV++ Y  Q+ +           +PL +E E+  +YVN+KQY GI+R
Sbjct: 101 IYTKYPYGEQQYYGVVSAYGSQSRV----------MLPLNMETEDSTIYVNSKQYHGIIR 150

Query: 113 RRQSRAKAE--LEKKVI--KARKPYLHESRHQHAMRRARGCGGRFLNTKKLN-DNAANSA 167
           RRQSRAKA   L++K +  + RKPY+H SRH HA+RR RG GGRFLNTK  N +N+  +A
Sbjct: 151 RRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNA 210

Query: 168 EKGMNSGADSSKGSTNGTGSVDSSIVQQE 196
           +KG  S    S+     + S +S +V  E
Sbjct: 211 KKGDGSMQIQSQPKPQQSNSQNSEVVHPE 239

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 21/131 (16%)

Query: 52  IVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEE---PVYVNAKQYR 108
           ++ T +P+ + Q+ GV++ Y  Q             R+ +PL+ME E    +YVN+KQY 
Sbjct: 95  MMYTKHPHVE-QYYGVVSAYGSQ---------RSSGRVMIPLKMETEEDGTIYVNSKQYH 144

Query: 109 GILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAE 168
           GI+RRRQSRAKAE   K+ + RKPY+H SRH HAMRR RG GGRFLNTK      A++A+
Sbjct: 145 GIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTK-----TADAAK 196

Query: 169 KGMNSGADSSK 179
           +   S + SS+
Sbjct: 197 QSKPSNSQSSE 207

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
297736254	405	unnamed protein product [Vitis vinifera]	0.952	0.6	0.648	3e-79
225450115	346	PREDICTED: nuclear transcription factor	0.952	0.702	0.648	4e-79
255553570	336	Nuclear transcription factor Y subunit A	0.949	0.720	0.585	9e-73
343157308	377	CCAAT-binding transcription factor subun	0.862	0.583	0.604	4e-71
224104075	376	predicted protein [Populus trichocarpa]	0.882	0.598	0.609	2e-70
449488843	318	PREDICTED: nuclear transcription factor	0.921	0.738	0.58	7e-67
449436305	318	PREDICTED: nuclear transcription factor	0.921	0.738	0.58	8e-67
356544165	303	PREDICTED: nuclear transcription factor	0.862	0.726	0.568	4e-60
147789470	342	hypothetical protein VITISV_000211 [Viti	0.694	0.517	0.657	8e-58
388523193	304	nuclear transcription factor Y subunit A	0.933	0.782	0.517	5e-55

>gi|297736254|emb|CBI24892.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/256 (64%), Positives = 184/256 (71%), Gaps = 13/256 (5%)

Query: 13  TDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYV 72
           +DG NGQEH HL    SST   M E LE NSQMELVGHSIVLTSYPY DP +VG++T Y 
Sbjct: 150 SDGRNGQEHQHLNPTASSTLPIMSEHLEPNSQMELVGHSIVLTSYPYQDPHNVGIMTSYG 209

Query: 73  PQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKP 132
           PQAM+ P L+GMHQ RMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKK IK RKP
Sbjct: 210 PQAMVHPHLFGMHQPRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRKP 269

Query: 133 YLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKGS---------- 181
           YLHESRHQHAMRRARGCGGRFLNTKKL++N AN +AEKG  SGA  S  S          
Sbjct: 270 YLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGSVSGAALSTQSASSSGSEHLP 329

Query: 182 TNGTGSVDSSIVQQERAMEENAHM--EHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQR 239
           TN + ++DSS VQQE        M   HT SN N N   L S Y++S+GS  G+  GQ R
Sbjct: 330 TNSSRNLDSSSVQQEEKGRTIQDMLEAHTYSNGNRNGHGLSSAYHSSNGSEGGDCFGQPR 389

Query: 240 GSMQGNGAPRGALPVK 255
            +MQ N AP  ALP+K
Sbjct: 390 ENMQLNTAPHRALPIK 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450115|ref|XP_002278849.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Vitis vinifera]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 166/256 (64%), Positives = 184/256 (71%), Gaps = 13/256 (5%)

Query: 13  TDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYV 72
           +DG NGQEH HL    SST   M E LE NSQMELVGHSIVLTSYPY DP +VG++T Y 
Sbjct: 91  SDGRNGQEHQHLNPTASSTLPIMSEHLEPNSQMELVGHSIVLTSYPYQDPHNVGIMTSYG 150

Query: 73  PQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKP 132
           PQAM+ P L+GMHQ RMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKK IK RKP
Sbjct: 151 PQAMVHPHLFGMHQPRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRKP 210

Query: 133 YLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKGS---------- 181
           YLHESRHQHAMRRARGCGGRFLNTKKL++N AN +AEKG  SGA  S  S          
Sbjct: 211 YLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGSVSGAALSTQSASSSGSEHLP 270

Query: 182 TNGTGSVDSSIVQQERAMEENAHM--EHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQR 239
           TN + ++DSS VQQE        M   HT SN N N   L S Y++S+GS  G+  GQ R
Sbjct: 271 TNSSRNLDSSSVQQEEKGRTIQDMLEAHTYSNGNRNGHGLSSAYHSSNGSEGGDCFGQPR 330

Query: 240 GSMQGNGAPRGALPVK 255
            +MQ N AP  ALP+K
Sbjct: 331 ENMQLNTAPHRALPIK 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553570|ref|XP_002517826.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis] gi|223543098|gb|EEF44633.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis]

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 150/256 (58%), Positives = 183/256 (71%), Gaps = 14/256 (5%)

Query: 11  SITDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITP 70
           S +DGINGQ H HLK +PSS P+TM   +E NSQMELVGHSIVLTSYPY+D Q+ G++  
Sbjct: 82  SQSDGINGQGH-HLKQVPSSAPVTMVGHVEPNSQMELVGHSIVLTSYPYSDAQYGGMLPS 140

Query: 71  YVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKAR 130
           Y PQAM+ PQLYGMH ARM LPLEMEEEPVYVNAKQ+ GILRRRQ+RAKAE+EKK IKAR
Sbjct: 141 YAPQAMVTPQLYGMHHARMALPLEMEEEPVYVNAKQFNGILRRRQARAKAEIEKKAIKAR 200

Query: 131 KPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA-EKGMNSGADSSKGST------- 182
           KPYLHESRHQHAMRRARGCGGRFL++KK   N  N A +  +NS  ++S  S        
Sbjct: 201 KPYLHESRHQHAMRRARGCGGRFLSSKKPESNTKNPASDNDVNSCINASTRSAILTGSEW 260

Query: 183 ---NGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGS-VEGNFLGQQ 238
              NGT ++DS+  + + + + +    H+SS+ N N   L S+Y+ SSG  ++  FL QQ
Sbjct: 261 LQKNGTRNLDSANGEGKGSTDHDM-QSHSSSHGNGNGHGLSSIYHPSSGDGLDRGFLVQQ 319

Query: 239 RGSMQGNGAPRGALPV 254
           R S   NG   GALP+
Sbjct: 320 RASTHWNGVTNGALPI 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343157308|gb|AEL95437.1| CCAAT-binding transcription factor subunit B [Populus euphratica]

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 148/245 (60%), Positives = 174/245 (71%), Gaps = 25/245 (10%)

Query: 11  SITDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITP 70
           S +D  NGQEH HLKHIPS T +TMG  LE NSQMELVGHSIVLTS+PYTDPQH G+   
Sbjct: 85  SQSDESNGQEH-HLKHIPSPTTVTMGGHLEPNSQMELVGHSIVLTSHPYTDPQHGGMFAS 143

Query: 71  YVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKAR 130
           Y  QAM+P QLYGM QARMPLPLEMEEEPVYVNAKQ+ GI+RRRQ+RAKAELEKK +K R
Sbjct: 144 YGAQAMVP-QLYGMPQARMPLPLEMEEEPVYVNAKQFHGIMRRRQARAKAELEKKAVKVR 202

Query: 131 KPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKGSTNGTGSVD 189
           KPYLHESRHQHAMRRARGCGGRFLNTKKL++N  N ++EKG         G  N +G + 
Sbjct: 203 KPYLHESRHQHAMRRARGCGGRFLNTKKLDNNTTNPTSEKG--------SGDLNSSGDL- 253

Query: 190 SSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPR 249
                      E      +SSN + N  +L S Y++SS   +G+FLGQQ+ +  GN    
Sbjct: 254 -----------EEGKGSRSSSNGHGNGHALSSRYHSSSH--DGSFLGQQKETTHGNRVSN 300

Query: 250 GALPV 254
           GA+ +
Sbjct: 301 GAVSI 305

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104075|ref|XP_002313307.1| predicted protein [Populus trichocarpa] gi|222849715|gb|EEE87262.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/246 (60%), Positives = 179/246 (72%), Gaps = 21/246 (8%)

Query: 11  SITDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITP 70
           S +D  N QEH HLKHIPS T +TMG  LE NSQMELVGHSIVLTS+PYTDPQ+ G+   
Sbjct: 85  SQSDESNEQEH-HLKHIPSPTTVTMGGHLEPNSQMELVGHSIVLTSHPYTDPQYGGMFAS 143

Query: 71  YVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKAR 130
           Y  QAM+P QLYGM  ARMPLPLEMEEEPVYVNAKQ+ GI+RRRQ+RAKAELEKK +K R
Sbjct: 144 YGAQAMVP-QLYGMPHARMPLPLEMEEEPVYVNAKQFHGIMRRRQARAKAELEKKAVKVR 202

Query: 131 KPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKGS-------- 181
           KPYLHESRHQHA+RRARGCGGRFLNTKKL+++A N ++EKG+NS A+ SK S        
Sbjct: 203 KPYLHESRHQHALRRARGCGGRFLNTKKLDNSATNPTSEKGINSVANISKQSYSFSVSEC 262

Query: 182 --TNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQR 239
             T G+G ++SS         E       SSN + N  +L S Y++SS   +G+FLGQQ+
Sbjct: 263 FPTEGSGDLNSS------GDLEEGKGSQASSNGHGNGHALSSRYHSSSH--DGSFLGQQK 314

Query: 240 GSMQGN 245
            +  GN
Sbjct: 315 ETTHGN 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488843|ref|XP_004158189.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis sativus]

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 145/250 (58%), Positives = 171/250 (68%), Gaps = 15/250 (6%)

Query: 18  GQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMI 77
           G+E  HLK+IP ST   +GE L+ NSQMELVGHSIVLTSYP++D Q+  ++T Y PQA +
Sbjct: 72  GKEVQHLKYIPFSTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLTSYGPQATL 131

Query: 78  PPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHES 137
           P ++YG+H ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKKVIK+RKPYLHES
Sbjct: 132 P-RIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHES 190

Query: 138 RHQHAMRRARGCGGRFLNTKKLN------------DNAANSAEKGMNSGADSSKGSTNGT 185
           RH HAMRRARG GGRFLNTKK N            D+ AN + K + S A S    TN  
Sbjct: 191 RHLHAMRRARGSGGRFLNTKKPNNVMSNTNREEDIDSVANHSTKPV-SEAVSKYMVTNEK 249

Query: 186 GSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGN 245
           G  ++   Q    M +N  + H   N  SN    LS Y++  G VEG  L Q   SMQ N
Sbjct: 250 GIKNTLDEQSREFMTQNMQITHAFFNGKSNVHG-LSTYSSQLGDVEGGHLDQPHESMQVN 308

Query: 246 GAPRGALPVK 255
           GAP+ A+P+K
Sbjct: 309 GAPQRAIPIK 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436305|ref|XP_004135933.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis sativus]

 Score =  259 bits (662), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 145/250 (58%), Positives = 171/250 (68%), Gaps = 15/250 (6%)

Query: 18  GQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMI 77
           G+E  HLK+IP ST   +GE L+ NSQMELVGHSIVLTSYP++D Q+  ++T Y PQA +
Sbjct: 72  GKEVQHLKYIPFSTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLTSYGPQATL 131

Query: 78  PPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHES 137
           P ++YG+H ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKKVIK+RKPYLHES
Sbjct: 132 P-RIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHES 190

Query: 138 RHQHAMRRARGCGGRFLNTKKLN------------DNAANSAEKGMNSGADSSKGSTNGT 185
           RH HAMRRARG GGRFLNTKK N            D+ AN + K + S A S    TN  
Sbjct: 191 RHLHAMRRARGSGGRFLNTKKPNNVMSNTNREEDIDSVANHSTKPV-SEAVSKYMVTNEK 249

Query: 186 GSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGN 245
           G  ++   Q    M +N  + H   N  SN    LS Y++  G VEG  L Q   SMQ N
Sbjct: 250 GIKNTLDEQSREFMTQNMQITHAFFNGKSNVHG-LSTYSSQLGDVEGGHLDQPHESMQVN 308

Query: 246 GAPRGALPVK 255
           GAP+ A+P+K
Sbjct: 309 GAPQRAIPIK 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544165|ref|XP_003540525.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Glycine max]

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 129/227 (56%), Positives = 162/227 (71%), Gaps = 7/227 (3%)

Query: 19  QEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIP 78
           +E+ ++KH   STP TM + L  N QMELVGHS+VLTS PY+D Q+  ++T Y  Q MI 
Sbjct: 71  KEYQNIKHAMLSTPFTMEKHLAPNPQMELVGHSVVLTS-PYSDAQYGQILTTYGQQVMIN 129

Query: 79  PQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESR 138
           PQLYGMH ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAE+EKKVIK RKPYLHESR
Sbjct: 130 PQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAEIEKKVIKNRKPYLHESR 189

Query: 139 HQHAMRRARGCGGRFLNTKKLNDNAANS-AEKGMNSGADSSKGSTNG----TGSVDSSIV 193
           H HAMRRARG GGRFLNTKKL +N +NS ++KG N+ A++S  S N     T +++    
Sbjct: 190 HLHAMRRARGNGGRFLNTKKLENNNSNSTSDKGNNTRANASTNSPNTQLLFTNNLNLGSS 249

Query: 194 QQERAMEENAHMEHTSSNSNSNNRSLLSMYNT-SSGSVEGNFLGQQR 239
              +A  ++ H E + +    N   L ++Y + ++G  EGN  G++R
Sbjct: 250 NVSQATVQHMHTEQSFTIGYHNGNGLTALYRSQANGKKEGNCFGKER 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789470|emb|CAN68910.1| hypothetical protein VITISV_000211 [Vitis vinifera]

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 139/190 (73%), Gaps = 13/190 (6%)

Query: 51  SIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGI 110
           S VLTSYPY DP +VG++T Y PQAM+ P L+GMHQ RMPLPLEMEEEPVYVNAKQY GI
Sbjct: 61  SKVLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPLPLEMEEEPVYVNAKQYHGI 120

Query: 111 LRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEK 169
           LRRRQSRAKAELEKK IK RKPYLHESRHQHAMRRARGCGGRFLNTKKL++N AN +AEK
Sbjct: 121 LRRRQSRAKAELEKKAIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEK 180

Query: 170 GMNSGADSSKGS----------TNGTGSVDSSIVQQERAMEENAHM--EHTSSNSNSNNR 217
           G  SGA  S  S          TN + ++DSS VQQE        M   HT SN N N  
Sbjct: 181 GSVSGAALSTQSASSSGSEHLPTNSSRNLDSSSVQQEEKGRTIQDMLEAHTYSNGNRNGH 240

Query: 218 SLLSMYNTSS 227
            L S Y++S+
Sbjct: 241 GLSSAYHSSN 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523193|gb|AFK49649.1| nuclear transcription factor Y subunit A7 [Medicago truncatula]

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 132/255 (51%), Positives = 164/255 (64%), Gaps = 17/255 (6%)

Query: 5   LMKVGFSITDGING---QEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTD 61
           L+    S+TD   G   +EH ++KH  SST  +M + L  NSQ ELVGHSIVLTS PY++
Sbjct: 59  LVSPSLSLTDNSGGDVAKEHRNIKHTLSSTTASMDKHLYPNSQRELVGHSIVLTS-PYSN 117

Query: 62  PQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAE 121
            Q   ++  Y  QAM+ PQLY MH ARM LPL+MEEEPVYVNAKQY GILRRRQSRAKAE
Sbjct: 118 AQFGQILNAYGQQAMMNPQLYQMHHARMLLPLKMEEEPVYVNAKQYHGILRRRQSRAKAE 177

Query: 122 LEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA-EKGMNSGADSSKG 180
           LEKKVIK RKPYLHESRHQHA+RRARG GGRFLNTKK   N +N+A EKG N+G  S   
Sbjct: 178 LEKKVIKVRKPYLHESRHQHALRRARGNGGRFLNTKKPEHNDSNAALEKGNNTGTTSGTN 237

Query: 181 STNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRG 240
           + N   S  S  + + +      H        + N  + L  ++ ++G  EG+F G++R 
Sbjct: 238 NENQGSSNVSQHMHKMQGFNIGYH--------DGNGFTALC-HSQANGKQEGDFFGKKRE 288

Query: 241 SMQGNGAPRGALPVK 255
           S   NG   G   ++
Sbjct: 289 S---NGEDEGLCLIQ 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.521	0.438	0.517	1.6e-30
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.525	0.492	0.520	5e-28
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.533	0.715	0.474	4.5e-27
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.631	0.813	0.423	2.5e-26
TAIR|locus:2078072	295	NF-YA2 ""nuclear factor Y, sub	0.623	0.538	0.392	2.9e-23
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.447	0.334	0.491	6.1e-23
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.4	0.310	0.527	2.1e-22
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.368	0.305	0.531	2.6e-22
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.380	0.314	0.51	2.7e-20
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.537	0.509	0.381	1.9e-19

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 74/143 (51%), Positives = 90/143 (62%)

Query:    46 ELVGHSIV-LTSYPYTDPQHVGVITPYV--PQAMIPPQLYG-MHQARXXXXXXXXXXXVY 101
             +LVGH++   +S PY DP + GV+  Y   P   +P   YG M  +R           V+
Sbjct:   113 QLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVP---YGGMPHSRMPLPPEMAQEPVF 169

Query:   102 VNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLND 161
             VNAKQY+ ILRRRQ+RAKAELEKK+IK+RKPYLHESRHQHAMRR RG GGRF   KK N 
Sbjct:   170 VNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNT 227

Query:   162 NAAN-SAEKGMNSGADSSKGSTN 183
              A+   AE+  N     S  S+N
Sbjct:   228 EASKRKAEEKSNGHVTQSPSSSN 250

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 75/144 (52%), Positives = 87/144 (60%)

Query:    46 ELVGHSIVLTSYPYTDPQHVGVITPYVPQAM-IPPQLYGMHQARXXXXXXXXXXXVYVNA 104
             ELVGH I     PY DP + G++  Y  Q +   P L GM + R           VYVNA
Sbjct:   120 ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYL-GMPRERTALPLDMAQEPVYVNA 178

Query:   105 KQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAA 164
             KQY GILRRR++RAKAELE+KVI+ RKPYLHESRH+HAMRRAR  GGRF   KK    A 
Sbjct:   179 KQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF--AKKSEVEAG 236

Query:   165 NSAEKGMNSGADSSKGS-TNGTGS 187
               A      G D  +GS TN +GS
Sbjct:   237 EDA-----GGRDRERGSATNSSGS 255

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/139 (47%), Positives = 86/139 (61%)

Query:    50 HSIVLTSYPYTDPQHVGVITPYV-PQAMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYR 108
             +S+    YPY DP +  +  P   P   +  QL G+ Q             V+VNAKQY 
Sbjct:    51 NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110

Query:   109 GILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA- 167
             GILRRRQSRA+ E + KVIK+RKPYLHESRH HA+RR RGCGGRFLN KK +++  +S+ 
Sbjct:   111 GILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSH 170

Query:   168 -EKGMNSGADSSKGSTNGT 185
              EK   S   S+  +++GT
Sbjct:   171 EEKSNLSAGKSAMAASSGT 189

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 75/177 (42%), Positives = 98/177 (55%)

Query:    17 NGQEHAHLKHIPSST-P-LTMG---ERLEQNS-QMELVGHSIVLTSYPYTDPQHVGVITP 70
             N + HA  +   S T P +  G   E ++ NS   E + H +    YPY DP +  V   
Sbjct:    11 NNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGL----YPYPDPYYRSVFAQ 66

Query:    71 --YVPQAM--IPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKV 126
               Y+P     +  QL GM Q             V+VNAKQY GILRRRQSRAK E   + 
Sbjct:    67 QAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRA 126

Query:   127 IKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTN 183
             IKA+KPY+HESRH HA+RR RGCGGRFLN KK  +N  +  E+   S  ++S+ S++
Sbjct:   127 IKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK--ENGDHKEEEEATSDENTSEASSS 181

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2078072 NF-YA2 ""nuclear factor Y, subunit A2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 69/176 (39%), Positives = 94/176 (53%)

Query:    28 PSSTPLTMGERLEQNSQMELVGHSI--VLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMH 85
             P   P   G      S    +G S   + T YPY + Q+ GV++ Y  Q+ +   L  M 
Sbjct:    74 PRLVPKPHGATFSMQSPCLELGFSQPPIYTKYPYGEQQYYGVVSAYGSQSRVMLPL-NME 132

Query:    86 QARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAE--LEKKVI--KARKPYLHESRHQH 141
                           +YVN+KQY GI+RRRQSRAKA   L++K +  + RKPY+H SRH H
Sbjct:   133 ---------TEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLH 183

Query:   142 AMRRARGCGGRFLNTKKLN-DNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQE 196
             A+RR RG GGRFLNTK  N +N+  +A+KG  S    S+     + S +S +V  E
Sbjct:   184 ALRRPRGSGGRFLNTKSQNLENSGTNAKKGDGSMQIQSQPKPQQSNSQNSEVVHPE 239

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 58/118 (49%), Positives = 74/118 (62%)

Query:    56 SYPYTDPQHVGVITP-YVPQA-MIPPQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILR 112
             S+ Y DP + G++   Y+PQA    PQ+  M   R            V+VNAKQY  I+R
Sbjct:   134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMR 193

Query:   113 RRQSRAKAELEKKVIKARK-PYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEK 169
             RRQ RAK E + K+I+ARK PYLHESRH HA++R RG GGRFLNTKKL   +  +A +
Sbjct:   194 RRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAR 251

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 58/110 (52%), Positives = 72/110 (65%)

Query:    56 SYPYTDPQHVGVITP--YVPQAMI-PPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILR 112
             S+ Y DP H G + P  Y+PQA I  PQ+  +               V+VNAKQ+  I+R
Sbjct:   132 SFHYADP-HFGGLMPAAYLPQATIWNPQMTRVPLP----FDLIENEPVFVNAKQFHAIMR 186

Query:   113 RRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDN 162
             RRQ RAK E + K+IKARKPYLHESRH HA++R RG GGRFLNTKKL ++
Sbjct:   187 RRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQES 236

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/94 (53%), Positives = 65/94 (69%)

Query:   100 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKL 159
             ++VNAKQY  ILRRR+ RAK E + K+IK RKPYLHESRH HA++RARG GGRFLNTKKL
Sbjct:   180 IFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKL 239

Query:   160 NDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIV 193
              +++ +     M +G + S     G   + SS +
Sbjct:   240 QESSNSLCSSQMANGQNFSMSPHGGGSGIGSSSI 273

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 51/100 (51%), Positives = 65/100 (65%)

Query:    62 PQHVGVIT-PYVPQAMIP-PQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILRRRQSRA 118
             P   G ++ PY  Q  +  PQ+ G+  +R            ++VNAKQY+ ILRRR+ RA
Sbjct:   132 PHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRA 191

Query:   119 KAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKK 158
             K E + K+IK RKPYLHESRH HA++R RG GGRFLNTKK
Sbjct:   192 KLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 58/152 (38%), Positives = 86/152 (56%)

Query:    52 IVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGIL 111
             ++ T +P+ + Q+ GV++ Y  Q      +  +               +YVN+KQY GI+
Sbjct:    95 MMYTKHPHVE-QYYGVVSAYGSQRSSGRVMIPLKME------TEEDGTIYVNSKQYHGII 147

Query:   112 RRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGM 171
             RRRQSRAKAE   K+ + RKPY+H SRH HAMRR RG GGRFLNTK      A++A++  
Sbjct:   148 RRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTK-----TADAAKQSK 199

Query:   172 NSGADSSKGSTNGTGSVDSSIVQQERAMEENA 203
              S + SS+       +++SS    E  + ++A
Sbjct:   200 PSNSQSSEVFHPENETINSSREANESNLSDSA 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028796001 SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (234 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	3e-34
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	5e-34
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	5e-10

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  117 bits (295), Expect = 3e-34
 Identities = 48/62 (77%), Positives = 51/62 (82%)

Query: 95  MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFL 154
            EEEPVYVNAKQY  ILRRRQ+RAK E + K+ K RKPYLHESRH HAMRR RG GGRFL
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 155 NT 156
           NT
Sbjct: 61  NT 62

Length = 62

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  116 bits (293), Expect = 5e-34
 Identities = 44/57 (77%), Positives = 50/57 (87%)

Query: 97  EEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRF 153
           +EP+YVNAKQY  ILRRRQ+RAK E E K+IK+RKPYLHESRH+HAMRR RG GGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 57.9 bits (139), Expect = 5e-10
 Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 97  EEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFL-- 154
            +P YVNAKQ   I +R   R    L+  V   R  YLHESRH+HAM R R   GRFL  
Sbjct: 158 FQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTA 215

Query: 155 -NTKKLNDNAANSAEKGMNSGADSSKGST 182
                LN          +      S GS+
Sbjct: 216 SEIDPLNLTGNTQDSMIIGQQTYPSHGSS 244

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.79

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=6.8e-44  Score=326.63  Aligned_cols=117  Identities=56%  Similarity=0.790  Sum_probs=106.5

Q ss_pred             cccceeecc-CCCCCCccccccc---cCCCCcc--cCCcccCCCC-CCCCCCCCCCC-CceeechhhhHHHHHHHHHHHH
Q 025303           48 VGHSIVLTS-YPYTDPQHVGVIT---PYVPQAM--IPPQLYGMHQ-ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAK  119 (255)
Q Consensus        48 ~g~s~a~~~-yPy~dpyygg~~a---aYg~q~~--~~pq~~G~~~-~R~pLP~~~~e-ePvyVNaKQY~rIlrRRq~RaK  119 (255)
                      +.+..++++ +||.+|||+|++.   +|++|++  +++++.||.. .|+|||.++.| |||||||||||||||||++|||
T Consensus       126 ~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~RaK  205 (307)
T KOG1561|consen  126 SMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQARAK  205 (307)
T ss_pred             ccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHHHHhh
Confidence            556666664 8999999999999   8998875  5789999987 99999999866 9999999999999999999999


Q ss_pred             HHHhhhhhhhcCcchhhhhhHHHhhccCCCCCcccccccccchhh
Q 025303          120 AELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAA  164 (255)
Q Consensus       120 ~e~~~kl~k~rkpYlHESRH~HAm~R~RG~gGRFl~~k~~~~~~~  164 (255)
                      ||+++||+|.||||||||||+|||||+||+|||||++||.+++..
T Consensus       206 lEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~ss  250 (307)
T KOG1561|consen  206 LEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDDSS  250 (307)
T ss_pred             hhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhhcc
Confidence            999999999999999999999999999999999999999876654

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=5.9e-38  Score=232.36  Aligned_cols=62  Identities=77%  Similarity=1.142  Sum_probs=60.3

Q ss_pred             CCCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhcCcchhhhhhHHHhhccCCCCCccccc
Q 025303           95 MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNT  156 (255)
Q Consensus        95 ~~eePvyVNaKQY~rIlrRRq~RaK~e~~~kl~k~rkpYlHESRH~HAm~R~RG~gGRFl~~  156 (255)
                      ++++|||||||||++|||||++|||+|++++|++.||||||||||+|||+|+||+||||||+
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=1.9e-35  Score=216.64  Aligned_cols=57  Identities=77%  Similarity=1.171  Sum_probs=56.2

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhhhh-hhhcCcchhhhhhHHHhhccCCCCCcc
Q 025303           97 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKPYLHESRHQHAMRRARGCGGRF  153 (255)
Q Consensus        97 eePvyVNaKQY~rIlrRRq~RaK~e~~~kl-~k~rkpYlHESRH~HAm~R~RG~gGRF  153 (255)
                      |+|||||||||++|||||++|||+|+++++ ++.||||||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.79  E-value=1.8e-20  Score=167.53  Aligned_cols=67  Identities=42%  Similarity=0.526  Sum_probs=60.1

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhcCcchhhhhhHHHhhccCCCCCcccccccccchhh
Q 025303           96 EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAA  164 (255)
Q Consensus        96 ~eePvyVNaKQY~rIlrRRq~RaK~e~~~kl~k~rkpYlHESRH~HAm~R~RG~gGRFl~~k~~~~~~~  164 (255)
                      ..+|.|||+|||++|+|||-+|++++.  +|.-.|..|||||||+|||+|+|+++||||++.|++..+.
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln~  223 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNL  223 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHH--HhhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhhh
Confidence            478999999999999999999987764  5667777799999999999999999999999999987663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		7e-15
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		7e-13

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 100 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKL 159
           +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+ 
Sbjct: 5   LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEK 64
Query: 160 N 160
           +
Sbjct: 65  D 65

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 100 VYVNAKQYRGILRRRQSRAKAELEKKVI-KARKPYLHESRHQHAMRRARGCGGRFL 154
           +YVNAKQ+  IL+RR +R K E + ++  K RKPYLHESRH HAMRR RG GGRFL
Sbjct: 5   LYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFL 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=6.7e-38  Score=232.26  Aligned_cols=62  Identities=61%  Similarity=1.011  Sum_probs=58.6

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhhhhh-hhcCcchhhhhhHHHhhccCCCCCccccccc
Q 025303           97 EEPVYVNAKQYRGILRRRQSRAKAELEKKVI-KARKPYLHESRHQHAMRRARGCGGRFLNTKK  158 (255)
Q Consensus        97 eePvyVNaKQY~rIlrRRq~RaK~e~~~kl~-k~rkpYlHESRH~HAm~R~RG~gGRFl~~k~  158 (255)
                      |+|||||||||++|||||++|||+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            6999999999999999999999999999985 8899999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00