Citrus Sinensis ID: 025322

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQFLILSDCLEDIGSCYNN
cccccEEEEEEEEccccHHHHHHccccccccccccccccEEEEcccccEEEEEEEEccccccccEEEccEEEccccccHHHHHHHHHHHHHHcccccccHHHHccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccEEEEccccccccccEEEEEEEcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccEEEEEEEcccEEEEEEEccccccccEccccccEEEEEcHcccEEEEEEEEcccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHcccEEEEEcccccccccccEEEccccccccccEEEEEEEcccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
MAAEKWVLMVTAQTPTNIAVIKYwgkrdetlilpvndsisvtldpdhlcttttvavspsfdqdrmwlngkeislgggryqNCLKEIRSracdvedtekgIKIEKKDWQKLHLHIAsfnnfptaaglaSSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWilgkegngsdslaVQLVDEEHWNDLVIIIAVVSSrqketssttgmreSVETSLLLQHRAKVQFLILSDCLEdigscynn
MAAEKWVLMvtaqtptniAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVavspsfdqdrmWLNGKeislgggryqNCLKEIRSracdvedtekGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVssrqketssttgmresvETSLLLQHRAKVQFLILSDCLEDIGSCYNN
MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTaaglassaagfaCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQFLILSDCLEDIGSCYNN
****KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKE******AIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVV*******************SLLLQHRAKVQFLILSDCLEDIGSCY**
*********VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQK**********SVETSLLLQHRAKVQFLILSDCLEDIGSCYN*
MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVS*****************TSLLLQHRAKVQFLILSDCLEDIGSCYNN
****KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSR*************VETSLLLQHRAKVQFLILSDCLEDIGSCYNN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKVQFLILSDCLEDIGSCYNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
Q54YQ9 391 Diphosphomevalonate decar yes no 0.834 0.542 0.528 2e-62
Q99JF5 401 Diphosphomevalonate decar yes no 0.905 0.573 0.563 6e-61
P53602 400 Diphosphomevalonate decar yes no 0.905 0.575 0.536 3e-60
Q0P570 400 Diphosphomevalonate decar yes no 0.889 0.565 0.527 1e-59
Q62967 401 Diphosphomevalonate decar yes no 0.956 0.605 0.519 6e-59
Q5U403 400 Diphosphomevalonate decar yes no 0.854 0.542 0.568 7e-59
Q751D8 397 Diphosphomevalonate decar yes no 0.866 0.554 0.504 1e-54
Q6BY07 388 Diphosphomevalonate decar yes no 0.885 0.579 0.515 2e-52
P32377 396 Diphosphomevalonate decar yes no 0.877 0.563 0.497 1e-50
O13963 393 Diphosphomevalonate decar yes no 0.877 0.567 0.491 4e-48
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1 Back     alignment and function desciption
 Score =  238 bits (608), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 15/227 (6%)

Query: 10  VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNG 69
           VT   P NIAVIKYWGKRDE +ILP+N S+S TL  D L TTTT+  S  + +D ++LNG
Sbjct: 6   VTCTAPVNIAVIKYWGKRDENIILPLNSSLSGTLHQDDLKTTTTIVASEDYTEDELYLNG 65

Query: 70  KEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASS 129
           K+  +   RYQN LK IRSRA  + D            +K  +HIAS NNFPTAAGLASS
Sbjct: 66  KKEDINAVRYQNVLKMIRSRATKLMD------------KKHCVHIASINNFPTAAGLASS 113

Query: 130 AAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAV 189
           A+G+ CLVF+LA++  +      +S IAR GSGSACRS++GGFVKW +G + +GSDS+AV
Sbjct: 114 ASGYCCLVFTLAQMYGV---DGDISGIARLGSGSACRSMYGGFVKWEMGTKDDGSDSIAV 170

Query: 190 QLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV 236
           Q+  E HW D+ II+ VV+ ++KETSST GM++S  TS++++ R  V
Sbjct: 171 QVQPESHWPDMNIIVLVVNDKKKETSSTDGMQKSAATSVMMKERCAV 217
Performs the first committed step in the biosynthesis of isoprenes.
Dictyostelium discoideum (taxid: 44689)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2 Back     alignment and function description
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1 Back     alignment and function description
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1 Back     alignment and function description
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2 SV=1 Back     alignment and function description
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1 Back     alignment and function description
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2 Back     alignment and function description
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
255560311 415 diphosphomevalonate decarboxylase, putat 0.917 0.561 0.896 1e-115
224097622 416 predicted protein [Populus trichocarpa] 0.925 0.564 0.885 1e-114
224110186 416 predicted protein [Populus trichocarpa] 0.925 0.564 0.876 1e-113
164604978 415 diphosphomevelonate decarboxylase [Hevea 0.917 0.561 0.879 1e-112
16417950 415 mevalonate disphosphate decarboxylase [H 0.917 0.561 0.875 1e-112
356575484 421 PREDICTED: diphosphomevalonate decarboxy 0.925 0.558 0.856 1e-111
15224931 412 mevalonate diphosphate decarboxylase 1 [ 0.925 0.570 0.868 1e-111
343466161 418 diphosphomevalonate decarboxylase [Sirai 0.925 0.562 0.851 1e-110
18410026 419 diphosphomevalonate decarboxylase [Arabi 0.925 0.560 0.859 1e-110
313507398 421 mevalonate 5-diphosphate decarboxylase [ 0.909 0.548 0.861 1e-109
>gi|255560311|ref|XP_002521172.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] gi|223539619|gb|EEF41203.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/233 (89%), Positives = 224/233 (96%)

Query: 3   AEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQ 62
           AE+WV MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDP HLCTTTTVAVSP+FDQ
Sbjct: 2   AERWVRMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPAHLCTTTTVAVSPAFDQ 61

Query: 63  DRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPT 122
           DRMWLNGKEISL GGRYQNCL+EIR+RACDVED EKGIKI KKDW+KLH+HIASFNNFPT
Sbjct: 62  DRMWLNGKEISLSGGRYQNCLREIRARACDVEDKEKGIKIAKKDWEKLHVHIASFNNFPT 121

Query: 123 AAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGN 182
           AAGLASSAAGFACLVF+LAKLMN +E+ S+LSAIARQGSGSACRSLFGGFVKWI+GK  +
Sbjct: 122 AAGLASSAAGFACLVFALAKLMNAREDNSELSAIARQGSGSACRSLFGGFVKWIMGKVDD 181

Query: 183 GSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
           GSDSLAVQLVDE+HW+DLVIIIAVVSSRQKETSST+GMRESVETSLLLQHRAK
Sbjct: 182 GSDSLAVQLVDEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQHRAK 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224097622|ref|XP_002311015.1| predicted protein [Populus trichocarpa] gi|222850835|gb|EEE88382.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110186|ref|XP_002315441.1| predicted protein [Populus trichocarpa] gi|222864481|gb|EEF01612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|164604978|dbj|BAF98285.1| diphosphomevelonate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|16417950|gb|AAL18927.1|AF429386_1 mevalonate disphosphate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|356575484|ref|XP_003555870.1| PREDICTED: diphosphomevalonate decarboxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|15224931|ref|NP_181404.1| mevalonate diphosphate decarboxylase 1 [Arabidopsis thaliana] gi|2288887|emb|CAA74700.1| mevalonate diphosphate decarboxylase [Arabidopsis thaliana] gi|3250736|emb|CAA76803.1| mevalonate diphosphate decarboxylase [Arabidopsis thaliana] gi|3786002|gb|AAC67348.1| mevalonate diphosphate decarboxylase [Arabidopsis thaliana] gi|31711704|gb|AAP68208.1| At2g38700 [Arabidopsis thaliana] gi|110736665|dbj|BAF00296.1| mevalonate diphosphate decarboxylase [Arabidopsis thaliana] gi|330254480|gb|AEC09574.1| mevalonate diphosphate decarboxylase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|343466161|gb|AEM42974.1| diphosphomevalonate decarboxylase [Siraitia grosvenorii] Back     alignment and taxonomy information
>gi|18410026|ref|NP_566995.1| diphosphomevalonate decarboxylase [Arabidopsis thaliana] gi|332645683|gb|AEE79204.1| diphosphomevalonate decarboxylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|313507398|gb|ADR65113.1| mevalonate 5-diphosphate decarboxylase [Catharanthus roseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
TAIR|locus:2064092 412 MVD1 "mevalonate diphosphate d 0.925 0.570 0.817 1e-100
TAIR|locus:2080265 419 AT3G54250 [Arabidopsis thalian 0.925 0.560 0.808 2.4e-99
MGI|MGI:2179327 401 Mvd "mevalonate (diphospho) de 0.905 0.573 0.516 2e-56
UNIPROTKB|P53602 400 MVD "Diphosphomevalonate decar 0.905 0.575 0.489 2.3e-55
UNIPROTKB|Q642E5 401 Mvd "Mevalonate (Diphospho) de 0.905 0.573 0.5 1.3e-54
RGD|621292 401 Mvd "mevalonate (diphospho) de 0.905 0.573 0.5 1.6e-54
ZFIN|ZDB-GENE-041114-127 400 zgc:100824 "zgc:100824" [Danio 0.854 0.542 0.519 1.6e-54
UNIPROTKB|Q0P570 400 MVD "Diphosphomevalonate decar 0.889 0.565 0.481 3.4e-54
UNIPROTKB|H3BP35271 MVD "Diphosphomevalonate decar 0.531 0.498 0.474 6.1e-54
UNIPROTKB|E2QYJ9 400 MVD "Uncharacterized protein" 0.905 0.575 0.497 2.4e-53
TAIR|locus:2064092 MVD1 "mevalonate diphosphate decarboxylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 192/235 (81%), Positives = 208/235 (88%)

Query:     1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
             MA EKWV+MVTAQTPTNIAVIKYWGKRDE  ILP+NDSISVTLDPDHLCT TTVAVSPSF
Sbjct:     1 MAEEKWVVMVTAQTPTNIAVIKYWGKRDEVRILPINDSISVTLDPDHLCTLTTVAVSPSF 60

Query:    61 DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
             D+DRMWLNGKEISL G RYQNCL+EIRSRA DVED EKGIKI KKDW+KLHLHIAS NNF
Sbjct:    61 DRDRMWLNGKEISLSGSRYQNCLREIRSRADDVEDKEKGIKIAKKDWEKLHLHIASHNNF 120

Query:   121 PTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
             PT            CLVF+LAKLMN+ E+ SQLSAIARQGSGSACRSLFGGFVKW +G +
Sbjct:   121 PTAAGLASSAAGFACLVFALAKLMNVNEDPSQLSAIARQGSGSACRSLFGGFVKWNMGNK 180

Query:   181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
              +GSDS+AVQLVD++HW+DLVIIIAVVSSRQKETSST+GMRESVETSLLLQHRAK
Sbjct:   181 EDGSDSVAVQLVDDKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQHRAK 235
GO:0004163 "diphosphomevalonate decarboxylase activity" evidence=IEA;IGI
GO:0005524 "ATP binding" evidence=IEA
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA
GO:0008610 "lipid biosynthetic process" evidence=IGI
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0006085 "acetyl-CoA biosynthetic process" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA
TAIR|locus:2080265 AT3G54250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2179327 Mvd "mevalonate (diphospho) decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P53602 MVD "Diphosphomevalonate decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q642E5 Mvd "Mevalonate (Diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|621292 Mvd "mevalonate (diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-127 zgc:100824 "zgc:100824" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P570 MVD "Diphosphomevalonate decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H3BP35 MVD "Diphosphomevalonate decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYJ9 MVD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q62967MVD1_RAT4, ., 1, ., 1, ., 3, 30.51980.95660.6059yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.330.824
3rd Layer4.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0090014401
diphosphomevalonate decarboxylase (EC-4.1.1.33) (417 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00060040
SubName- Full=Putative uncharacterized protein; (342 aa)
   • •• 0.946
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
•  • •• 0.939
estExt_Genewise1_v1.C_LG_III0996
hypothetical protein (493 aa)
     •• 0.904
estExt_Genewise1_v1.C_290342
SubName- Full=Putative uncharacterized protein; (496 aa)
     •  0.900
gw1.XV.832.1
hypothetical protein (236 aa)
     •  0.899
gw1.VII.3333.1
annotation not avaliable (311 aa)
     •  0.899
gw1.IV.3487.1
hypothetical protein (293 aa)
     •  0.899
gw1.II.860.1
hypothetical protein (306 aa)
     •  0.899
grail3.0137000601
hypothetical protein (134 aa)
     •  0.899
grail3.0045022601
hypothetical protein (259 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
PLN02407343 PLN02407, PLN02407, diphosphomevalonate decarboxyl 1e-168
COG3407329 COG3407, MVD1, Mevalonate pyrophosphate decarboxyl 2e-65
TIGR01240305 TIGR01240, mevDPdecarb, diphosphomevalonate decarb 6e-63
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 7e-08
TIGR01920261 TIGR01920, Shik_kin_archae, shikimate kinase 0.002
>gnl|CDD|178029 PLN02407, PLN02407, diphosphomevalonate decarboxylase Back     alignment and domain information 
 Score =  467 bits (1204), Expect = e-168
 Identities = 195/230 (84%), Positives = 215/230 (93%), Gaps = 1/230 (0%)

Query: 7   VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
           V+MVTAQ PTNIAVIKYWGKRDE LILP+N SISVTLDPDHLC TTTVAVSPSFDQDR+W
Sbjct: 1   VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLW 60

Query: 67  LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
           LNGKEISL GGRYQNCL+EIR+RA DVED EKGIKI KKDW+KLH+HIAS+NNFPTAAGL
Sbjct: 61  LNGKEISLSGGRYQNCLREIRARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGL 120

Query: 127 ASSAAGFACLVFSLAKLMNLKEN-QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSD 185
           ASSAAGFACLVF+LAKLMN+KE+   +LSAIARQGSGSACRSL+GGFVKW +GK+ +GSD
Sbjct: 121 ASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSACRSLYGGFVKWNMGKKEDGSD 180

Query: 186 SLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
           S+AVQL DE+HW+DLVIIIAVVSSRQKETSST+GMRESVETS LLQHRAK
Sbjct: 181 SIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAK 230

Length = 343
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|130307 TIGR01240, mevDPdecarb, diphosphomevalonate decarboxylase Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
KOG2833 395 consensus Mevalonate pyrophosphate decarboxylase [ 100.0
PLN02407343 diphosphomevalonate decarboxylase 100.0
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 100.0
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 100.0
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 99.93
PTZ00299 336 homoserine kinase; Provisional 99.9
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.9
PRK01212301 homoserine kinase; Provisional 99.89
PLN02451370 homoserine kinase 99.84
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.78
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.78
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.78
PRK03926302 mevalonate kinase; Provisional 99.77
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.75
PTZ00298328 mevalonate kinase; Provisional 99.74
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.73
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.72
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.72
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.72
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.72
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.72
PRK01123282 shikimate kinase; Provisional 99.71
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.71
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.7
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.69
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.69
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.68
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.65
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.64
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.63
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.63
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.62
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.59
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 99.58
PRK05905258 hypothetical protein; Provisional 99.55
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.5
PLN02677 387 mevalonate kinase 99.48
PRK03817 351 galactokinase; Provisional 99.44
PRK05101 382 galactokinase; Provisional 99.43
PRK00555 363 galactokinase; Provisional 99.43
TIGR00131 386 gal_kin galactokinase. The galactokinases found by 99.43
PRK05322 387 galactokinase; Provisional 99.4
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 99.38
PLN02521 497 galactokinase 99.35
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.33
KOG1511 397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 99.19
COG0153 390 GalK Galactokinase [Carbohydrate transport and met 99.04
COG4542293 PduX Protein involved in propanediol utilization, 99.01
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 98.96
TIGR01219 454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 98.9
COG1907312 Predicted archaeal sugar kinases [General function 98.89
PLN02865 423 galactokinase 98.8
COG2605333 Predicted kinase related to galactokinase and meva 98.68
PTZ00290 468 galactokinase; Provisional 98.34
KOG1537355 consensus Homoserine kinase [Amino acid transport 98.25
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 95.71
KOG4644 948 consensus L-fucose kinase [Carbohydrate transport 94.35
KOG0631 489 consensus Galactokinase [Carbohydrate transport an 86.37
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-61  Score=437.96  Aligned_cols=243  Identities=60%  Similarity=0.904  Sum_probs=226.5

Q ss_pred             ccceeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHH
Q 025322            4 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCL   83 (254)
Q Consensus         4 ~~~~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl   83 (254)
                      ++|+.++++++|.|||+||||||||+.+|+|.|||||+||++.+|+|.|++..+++.+.|++|+||++++..+.|...|+
T Consensus         2 ~k~~~~~t~taPvNIAvIKYWGKRD~~l~LP~N~SISvTL~~D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q~cl   81 (395)
T KOG2833|consen    2 DKPVAEVTATAPVNIAVIKYWGKRDEELNLPTNDSISVTLSQDDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQRCL   81 (395)
T ss_pred             CCcceeEEeeccceeeeeeeccccchhhcCCcCCceeEEeccccceeeeeEeeccccccceeEECCceeccccHHHHHHH
Confidence            68999999999999999999999999999999999999998889999999999988888999999999888778999999


Q ss_pred             HHHHHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCC
Q 025322           84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS  163 (254)
Q Consensus        84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gs  163 (254)
                      +.+|++.+..++.+.  ++|+.  ...+++|.+.||||+++||+||||+++|+++|++++++++++++|++.+||+||||
T Consensus        82 ~e~r~~~~d~~~~~~--~~~~~--~~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GSGS  157 (395)
T KOG2833|consen   82 REIRRLARDREESEA--SLPSN--GPLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGSGS  157 (395)
T ss_pred             HHHHHHhhhhhhhhc--ccCcC--CCeeEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCch
Confidence            999999877543332  44432  24589999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHH-HHhhHH
Q 025322          164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV-QFLILS  242 (254)
Q Consensus       164 a~~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~-~~~~~~  242 (254)
                      ||||+|||||.|..|...||.|+.++++.+..|||+|+++++|++..+|+++||+||+++++||++|+.|++. ..+..+
T Consensus       158 ACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~  237 (395)
T KOG2833|consen  158 ACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQ  237 (395)
T ss_pred             hhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 889999


Q ss_pred             HHHHhhcc
Q 025322          243 DCLEDIGS  250 (254)
Q Consensus       243 ~~~e~~~~  250 (254)
                      .++|+|.+
T Consensus       238 ~m~eaI~~  245 (395)
T KOG2833|consen  238 QMREAIRE  245 (395)
T ss_pred             HHHHHHHh
Confidence            99999965

>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3f0n_A 414 Mus Musculus Mevalonate Pyrophosphate Decarboxylase 5e-60
3d4j_A 400 Crystal Structure Of Human Mevalonate Diphosphate D 8e-60
1fi4_A 416 The X-Ray Crystal Structure Of Mevalonate 5-Diphosp 1e-47
2hke_A 380 Mevalonate Diphosphate Decarboxylase From Trypanoso 1e-38
4dpw_A332 Crystal Structure Of Staphylococcus Epidermidis D28 4e-26
3qt5_A332 Crystal Structure Of Staphylococcus Epidermidis Mev 4e-26
3qt8_A332 Crystal Structure Of Mutant S192a Staphylococcus Ep 8e-26
2hk2_A331 Crystal Structure Of Mevalonate Diphosphate Decarbo 2e-25
3lto_A323 Crystal Structure Of A Mevalonate Diphosphate Decar 4e-10
2gs8_A317 Structure Of Mevalonate Pyrophosphate Decarboxylase 1e-05
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase Length = 414 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (578), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/228 (51%), Positives = 152/228 (66%), Gaps = 5/228 (2%)
Query: 8   LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL 67
           LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTTVA+S  F +DR+WL
Sbjct: 22  LMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWL 81
Query: 68  NGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXX 127
           NG+E  +G  R Q CL+EIR  A     TE G  +      K  +H+AS NNFPT     
Sbjct: 82  NGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYK--VHVASVNNFPTAAGLA 139
Query: 128 XXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
                  CL ++LA++  +   +  LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+
Sbjct: 140 SSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSI 196
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
           A Q+  E HW  L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+
Sbjct: 197 ARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAE 244
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate Decarboxylase Length = 400 Back     alignment and structure
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate Decarboxylase At 2.3 Angstrom Resolution Length = 416 Back     alignment and structure
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma Brucei Length = 380 Back     alignment and structure
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a Mevalonate Diphosphate Decarboxylase Complexed With Mevalonate Diphosphate And Atpgs Length = 332 Back     alignment and structure
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Length = 332 Back     alignment and structure
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Complexed With Inhibitor 6- Fmvapp Length = 332 Back     alignment and structure
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase From Staphylococcus Aureus (Monoclinic Form) Length = 331 Back     alignment and structure
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate Decarboxylase From Legionella Pneumophila Length = 323 Back     alignment and structure
>pdb|2GS8|A Chain A, Structure Of Mevalonate Pyrophosphate Decarboxylase From Streptococcus Pyogenes Length = 317 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
3f0n_A 414 Mevalonate pyrophosphate decarboxylase; cholestero 1e-84
1fi4_A 416 Mevalonate 5-diphosphate decarboxylase; mixed alph 3e-79
2hke_A 380 Diphosphomevalonate decarboxylase, putative; meval 5e-72
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 1e-60
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 9e-56
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 1e-54
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 2e-05
3k17_A 365 LIN0012 protein; protein structure initiative II(P 1e-04
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 7e-04
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Length = 414 Back     alignment and structure
 Score =  257 bits (658), Expect = 1e-84
 Identities = 128/231 (55%), Positives = 164/231 (70%), Gaps = 5/231 (2%)

Query: 5   KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDR 64
              LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTTVA+S  F +DR
Sbjct: 19  PQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDR 78

Query: 65  MWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 124
           +WLNG+E  +G  R Q CL+EIR  A     TE G  +         +H+AS NNFPTAA
Sbjct: 79  IWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSY--KVHVASVNNFPTAA 136

Query: 125 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGS 184
           GLASSAAG+ACL ++LA++  ++ +   LS +AR+GSGSACRSL+GGFV+W +G++ +G 
Sbjct: 137 GLASSAAGYACLAYTLAQVYGVEGD---LSEVARRGSGSACRSLYGGFVEWQMGEQADGK 193

Query: 185 DSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235
           DS+A Q+  E HW  L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+
Sbjct: 194 DSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAE 244
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Length = 416 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Length = 380 Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 3qt8_A* 2hk2_A 2hk3_A Length = 332 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
3f0n_A 414 Mevalonate pyrophosphate decarboxylase; cholestero 100.0
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 100.0
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 100.0
2hke_A 380 Diphosphomevalonate decarboxylase, putative; meval 100.0
1fi4_A 416 Mevalonate 5-diphosphate decarboxylase; mixed alph 100.0
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 100.0
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.89
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.89
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.86
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.84
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.82
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.8
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.79
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.79
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.78
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.76
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.76
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.73
2cz9_A 350 Probable galactokinase; structural genomics, NPPSF 99.69
1pie_A 419 Galactokinase; galactose, galactosemia, transferas 99.69
3k17_A 365 LIN0012 protein; protein structure initiative II(P 99.64
1kvk_A 395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.63
1wuu_A 399 Galactokinase; galactosemia, GHMP superfamily, tra 99.61
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.61
3k85_A 357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.6
2a2c_A 478 N-acetylgalactosamine kinase; galactokinase, , tra 99.57
3v2u_C 520 Protein GAL3; rossmann fold, GHMP superfamily, tra 98.77
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
Probab=100.00  E-value=5.3e-54  Score=406.97  Aligned_cols=238  Identities=54%  Similarity=0.844  Sum_probs=206.3

Q ss_pred             eeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHH
Q 025322            7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI   86 (254)
Q Consensus         7 ~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~   86 (254)
                      ..++|++||+||||||||||||+++|+|.|+|||+||++++|+|+|+|+++++.++|+++|||++.+....|+.+|++.+
T Consensus        21 ~~~~t~~A~~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~~l~~i  100 (414)
T 3f0n_A           21 DLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREI  100 (414)
T ss_dssp             CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHHHHHHH
T ss_pred             CceEEEEecccchhhhhcccccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEECCEecCcccHHHHHHHHHH
Confidence            35899999999999999999999999999999999999878999999999887667999999998765567899999999


Q ss_pred             HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchh
Q 025322           87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR  166 (254)
Q Consensus        87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~  166 (254)
                      |++++..+....+..+|  .+...+++|+++|+||+++|||||||++||++.|+++++|+   .++++++|++++||+||
T Consensus       101 R~~~~~~~~~~~~~~~~--~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~  175 (414)
T 3f0n_A          101 RRLARKRRSTEDGDTLP--LSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACR  175 (414)
T ss_dssp             HHHHHC-------CCHH--HHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGG
T ss_pred             HHHhccccccccccccc--ccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcch
Confidence            99887532111111111  12246899999999999999999999999999999999997   47899999999999999


Q ss_pred             hhccCceeeeccccCCCCCeeEEEcccCCCCCceeEEEEEEcCCCcccCcHHHHHhHhhcCccHHHHHHH-HHhhHHHHH
Q 025322          167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKV-QFLILSDCL  245 (254)
Q Consensus       167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~vv~v~~~~~k~vsS~~gm~~~v~ts~~~~~r~~~-~~~~~~~~~  245 (254)
                      |+|||+|+|..+...++.++++++++++.+||+|++++++++.+.|.++||++|++++.|+++|+.|++. ...++..++
T Consensus       176 s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~v~~~~~~~~~~l~  255 (414)
T 3f0n_A          176 SLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMT  255 (414)
T ss_dssp             GGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHH
T ss_pred             HhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHHHHHHHHHHHHHHHH
Confidence            9999999998775556678899999877789999999999999999999999999999999999999999 888888888


Q ss_pred             Hhhc
Q 025322          246 EDIG  249 (254)
Q Consensus       246 e~~~  249 (254)
                      ++|.
T Consensus       256 ~AL~  259 (414)
T 3f0n_A          256 RCIQ  259 (414)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8774
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d1fi4a1188 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarb 3e-84
d1fi4a2 203 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate dec 3e-08
d1h72c1163 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Met 3e-04
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  247 bits (632), Expect = 3e-84
 Identities = 98/191 (51%), Positives = 127/191 (66%), Gaps = 4/191 (2%)

Query: 7   VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
           V   +   P NIA +KYWGKRD  L LP N SISVTL  D L T T+ A +P F++D +W
Sbjct: 1   VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLW 60

Query: 67  LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
           LNG+  S+   R QNCL+++R    ++E  +  +        +  LHI S NNFPTAAGL
Sbjct: 61  LNGEPHSIDNERTQNCLRDLRQLRKEMESKDASLP----TLSQWKLHIVSENNFPTAAGL 116

Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
           ASSAAGFA LV ++AKL  L ++ S++S IAR+GSGSACRSLFGG+V W +GK  +G DS
Sbjct: 117 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDS 176

Query: 187 LAVQLVDEEHW 197
           +AVQ+ D   W
Sbjct: 177 MAVQIADSSDW 187
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 100.0
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.93
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.65
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.64
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.47
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.4
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.38
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.37
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.33
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.33
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-50  Score=344.76  Aligned_cols=188  Identities=52%  Similarity=0.877  Sum_probs=162.5

Q ss_pred             eeEEEEEccceeeeeeccccccccCCCCCCCeeEEeeCCCCceeEEEEEecCCCCCceEEecCeeccCCcchHHHHHHHH
Q 025322            7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI   86 (254)
Q Consensus         7 ~~~~~a~ap~nIaliKYwGk~d~~~~~P~~dSisltL~~~~L~t~t~V~~~~~~~~~~i~lnG~~~~~~~~~~~~vl~~~   86 (254)
                      |+++|++||+||||||||||+|+++|+|.|+|||+||++.+++|+|+|+.+++.+.|++++||++.+....++.++++.+
T Consensus         1 ~~~~t~~apsNIALiKYWGK~d~~~~lP~n~SiS~TL~~~~~~T~t~v~~~~~~~~d~~~lnG~~~~~~~~~~~~~~~~l   80 (188)
T d1fi4a1           1 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDL   80 (188)
T ss_dssp             CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHHHHHH
T ss_pred             CeEEEEEccCcEEEEEeccccCcccCCCCCCeEEEEecCCCcEEEEEEEeCCCCcccceeECCeecccchHHHHHHHHHH
Confidence            57899999999999999999999999999999999998778899999999887777999999998766566777787776


Q ss_pred             HHHccccccccccchhhcccccccceEEEEEcCCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCchh
Q 025322           87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR  166 (254)
Q Consensus        87 r~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~~~GLgSSaA~~aA~~~A~~~l~~~~l~~~el~~iA~~~~Gsa~~  166 (254)
                      ++.....+....+  +|  .+....++|+++|+||+++||+|||++++|++.|++++++++++.++++.+||+||||+||
T Consensus        81 ~~~~~~~~~~~~~--~p--~~~~~~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~~~~~~~~~~~S~lARlGSGSAcR  156 (188)
T d1fi4a1          81 RQLRKEMESKDAS--LP--TLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACR  156 (188)
T ss_dssp             HHHHHHHHTTCTT--SC--CGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHhccccc--Cc--ccccceEEEEecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccchhh
Confidence            6543221100000  01  1234579999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCceeeeccccCCCCCeeEEEcccCCCCC
Q 025322          167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN  198 (254)
Q Consensus       167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~  198 (254)
                      |+|||+|+|..+...++.+++++++.++.|||
T Consensus       157 Si~Gg~v~W~~g~~~dg~d~~a~~~~~~~hWp  188 (188)
T d1fi4a1         157 SLFGGYVAWEMGKAEDGHDSMAVQIADSSDWP  188 (188)
T ss_dssp             GGSSSEEEEECCSCTTCTTCEEEEEECGGGST
T ss_pred             hhcCCeeEeccCCCCCCCceeEEECCCccCCC
Confidence            99999999999988899999999999888998
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure