Citrus Sinensis ID: 025329

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHccccccccccccEEEEccccccEEEEEEccccHHHHHHcccccEEEEEcHHHHHHcccccccEEEccccccccEEEEEEEEcccccccHHHHHHHHcccccccccccEEEcccccHHHHHHHHccccEEEEEEcccccHHcccccccccc
ccHHHHHHHcccHHcccccccccccccccccccEEEcccccccccccccccEEEEEEccccccccccEEcccccccccccccEEEEEEcccccccHHHHHHHHHcccEEccccHHHHHHccccccccEEEEEccHHHHHHHHcccEEEEEEcHHHHHHHccccccHEEEEHHcccccEEEEEEEccccccccHHHHHHHHHccccccccccEEEcccHHHHHHHHHHccccEEEEEEEcccEEHccccccHccc
msvssaslflqpyfrqcpslspsglsffcplssfhisvasgpttatnkpaaavtccvsssqqfeSHVSVVNGnidnriserdeirlglpskgrmaADTLDLLKDCqlsvkqvnprqyvaqipqlsnlevwFQRPKDIVRKLLSgdldlgivgldtvsefgqgnedlIIVHDaldygdcrlslaipkygifeNINSLRELaqmpqwtaekplrvatgftylgpkfmkdnglkhVVFSTAdgaleaapAVRITHLL
MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVvngnidnriserdeIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRqyvaqipqlsnlevWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTAdgaleaapavrithll
MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL
**************************FFCPLSSFHISVASG**TATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNRI*****IRLGL****RMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAV******
***************************************************AVTC****************************IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL
MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASG***********VTCCVSSSQQFESHVSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL
*******LFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSS*****HVS*********ISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRIT*L*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSVSSASLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
A5UA21 303 ATP phosphoribosyltransfe yes no 0.629 0.528 0.292 1e-12
Q9RQ89 299 ATP phosphoribosyltransfe N/A no 0.574 0.488 0.287 2e-12
B8D705 299 ATP phosphoribosyltransfe yes no 0.582 0.494 0.295 2e-12
P57200 299 ATP phosphoribosyltransfe yes no 0.582 0.494 0.295 2e-12
B8D8Q1 299 ATP phosphoribosyltransfe yes no 0.582 0.494 0.295 2e-12
P43853 303 ATP phosphoribosyltransfe yes no 0.629 0.528 0.287 5e-12
Q4QN75 303 ATP phosphoribosyltransfe yes no 0.629 0.528 0.287 5e-12
A5UGY0 303 ATP phosphoribosyltransfe yes no 0.629 0.528 0.287 5e-12
Q11LA2230 ATP phosphoribosyltransfe yes no 0.637 0.704 0.301 2e-11
Q9ZHE7 299 ATP phosphoribosyltransfe yes no 0.574 0.488 0.293 3e-11
>sp|A5UA21|HIS1_HAEIE ATP phosphoribosyltransferase OS=Haemophilus influenzae (strain PittEE) GN=hisG PE=3 SV=1 Back     alignment and function desciption
 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 28/188 (14%)

Query: 74  IDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPR--QYVAQIPQLSNLEVWF 131
           + N   + + +R+ L  KGR++ D   LLK C + +     R   Y   +P    +E+  
Sbjct: 1   MTNTTMQPNRLRIALQKKGRLSQDCAILLKQCGVKINWNEQRLIAYAENLP----IEILR 56

Query: 132 QRPKDIVRKLLSGDLDLGIVGLDTVSE--FGQGNEDLIIVHDAL---DYGDCRLSLAIPK 186
            R  DI   +  G +DLGI+G + + E   G+   +  + +  L   D+GDCRLSLA+ +
Sbjct: 57  VRDDDIPGLIFDGVVDLGIIGENVLEEEELGRRAANETVTYKKLRQLDFGDCRLSLAVDR 116

Query: 187 YGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTA--DGALEA 244
              +EN+   ++LA           R+AT + YL  ++M +NG   V F +   +G++E 
Sbjct: 117 DCHYENV---KDLANR---------RIATSYPYLLKRYMNENG---VSFKSCLLNGSVEV 161

Query: 245 APAVRITH 252
           AP+  I +
Sbjct: 162 APSAGIAY 169
Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
Haemophilus influenzae (strain PittEE) (taxid: 374930)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 7
>sp|Q9RQ89|HIS1_BUCDN ATP phosphoribosyltransferase OS=Buchnera aphidicola subsp. Diuraphis noxia GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|B8D705|HIS1_BUCAT ATP phosphoribosyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|P57200|HIS1_BUCAI ATP phosphoribosyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|B8D8Q1|HIS1_BUCA5 ATP phosphoribosyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|P43853|HIS1_HAEIN ATP phosphoribosyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|Q4QN75|HIS1_HAEI8 ATP phosphoribosyltransferase OS=Haemophilus influenzae (strain 86-028NP) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|A5UGY0|HIS1_HAEIG ATP phosphoribosyltransferase OS=Haemophilus influenzae (strain PittGG) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|Q11LA2|HIS1_MESSB ATP phosphoribosyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=hisG PE=3 SV=1 Back     alignment and function description
>sp|Q9ZHE7|HIS1_BUCAP ATP phosphoribosyltransferase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=hisG PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
225448156 390 PREDICTED: ATP phosphoribosyltransferase 0.874 0.569 0.729 1e-95
297739543 376 unnamed protein product [Vitis vinifera] 0.767 0.518 0.83 1e-94
357480029 373 ATP phosphoribosyltransferase [Medicago 0.755 0.514 0.807 5e-91
449435128 395 PREDICTED: ATP phosphoribosyltransferase 0.826 0.531 0.744 1e-90
224146209 415 predicted protein [Populus trichocarpa] 0.952 0.583 0.705 2e-90
217073840246 unknown [Medicago truncatula] 0.755 0.780 0.802 1e-89
413968594275 chloroplast ATP phosphoribosyl transfera 0.759 0.701 0.777 2e-89
18391069 413 ATP phosphoribosyltransferase [Arabidops 0.842 0.518 0.736 7e-89
21593999 413 ATP phosphoribosyl transferase [Arabidop 0.842 0.518 0.736 8e-89
388516629223 unknown [Medicago truncatula] 0.755 0.860 0.796 1e-88
>gi|225448156|ref|XP_002264507.1| PREDICTED: ATP phosphoribosyltransferase [Vitis vinifera] Back     alignment and taxonomy information
 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 178/244 (72%), Positives = 198/244 (81%), Gaps = 22/244 (9%)

Query: 7   SLFLQPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESH 66
           S+FLQ    QCPSL             F    +S   +A     + V CC+S S      
Sbjct: 2   SMFLQ----QCPSL-------------FTFPSSSPSFSAQISVKSTVFCCLSPSP----- 39

Query: 67  VSVVNGNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSN 126
           V+VVNGN + R SER+EIRLGLPSKGRMA DTLDLLKDCQLSV+QVNPRQYVA+IPQLSN
Sbjct: 40  VTVVNGNTERRSSERNEIRLGLPSKGRMATDTLDLLKDCQLSVRQVNPRQYVAEIPQLSN 99

Query: 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPK 186
           +EVWFQRPKDIVRKLLSGDLDLGIVGLDTV+E+GQGN+DLII HDAL+YGDCRLSLAIPK
Sbjct: 100 MEVWFQRPKDIVRKLLSGDLDLGIVGLDTVTEYGQGNDDLIIAHDALEYGDCRLSLAIPK 159

Query: 187 YGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAP 246
           YGIFENINSL+ELAQMPQWT +KPLRVATGFTYLGPKF+K+NGLKHV FSTADGALEAAP
Sbjct: 160 YGIFENINSLKELAQMPQWTVQKPLRVATGFTYLGPKFLKENGLKHVTFSTADGALEAAP 219

Query: 247 AVRI 250
           A+ I
Sbjct: 220 AMGI 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739543|emb|CBI29725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357480029|ref|XP_003610300.1| ATP phosphoribosyltransferase [Medicago truncatula] gi|355511355|gb|AES92497.1| ATP phosphoribosyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449435128|ref|XP_004135347.1| PREDICTED: ATP phosphoribosyltransferase-like [Cucumis sativus] gi|449503303|ref|XP_004161935.1| PREDICTED: ATP phosphoribosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224146209|ref|XP_002325923.1| predicted protein [Populus trichocarpa] gi|222862798|gb|EEF00305.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217073840|gb|ACJ85280.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|413968594|gb|AFW90634.1| chloroplast ATP phosphoribosyl transferase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|18391069|ref|NP_563853.1| ATP phosphoribosyltransferase [Arabidopsis thaliana] gi|25083351|gb|AAN72065.1| ATP phosphoribosyl transferase [Arabidopsis thaliana] gi|26452034|dbj|BAC43107.1| putative ATP phosphoribosyl transferase AtATP-PRT2 [Arabidopsis thaliana] gi|30725676|gb|AAP37860.1| At1g09795 [Arabidopsis thaliana] gi|332190373|gb|AEE28494.1| ATP phosphoribosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593999|gb|AAM65917.1| ATP phosphoribosyl transferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388516629|gb|AFK46376.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
TAIR|locus:505006113 413 ATP-PRT2 "ATP phosphoribosyl t 0.874 0.537 0.725 5.8e-82
TAIR|locus:2196287 411 ATP-PRT1 "ATP phosphoribosyl t 0.929 0.574 0.677 2.6e-79
TIGR_CMR|CJE_1769 299 CJE_1769 "ATP phosphoribosyltr 0.622 0.528 0.264 8.6e-11
TIGR_CMR|CPS_3889 300 CPS_3889 "ATP phosphoribosyltr 0.590 0.5 0.323 2.2e-10
TIGR_CMR|SO_2074 299 SO_2074 "ATP phosphoribosyltra 0.606 0.515 0.258 2.3e-07
ASPGD|ASPL0000017044 307 AN3748 [Emericella nidulans (t 0.610 0.504 0.289 2.2e-06
POMBASE|SPAC25G10.05c 310 his1 "ATP phosphoribosyltransf 0.637 0.522 0.274 3.8e-06
UNIPROTKB|P60757 299 hisG "HisG" [Escherichia coli 0.606 0.515 0.235 7.9e-06
TIGR_CMR|SPO_0669230 SPO_0669 "ATP phosphoribosyltr 0.606 0.669 0.255 1.1e-05
UNIPROTKB|Q9KSX4 298 hisG "ATP phosphoribosyltransf 0.582 0.496 0.278 9e-05
TAIR|locus:505006113 ATP-PRT2 "ATP phosphoribosyl transferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 169/233 (72%), Positives = 189/233 (81%)

Query:    19 SLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDN-R 77
             SL PS    F P+ S  +S+    T    +    VT CVS++Q+     SV+NG  D+  
Sbjct:    24 SLVPSS-PLFSPIPSTTVSL----TGIRQRCLRMVTSCVSNAQK-----SVLNGATDSVS 73

Query:    78 ISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDI 137
             +  R++IRLGLPSKGRMAAD+LDLLKDCQL VKQVNPRQYVAQIPQL N EVWFQRPKDI
Sbjct:    74 VVGREQIRLGLPSKGRMAADSLDLLKDCQLFVKQVNPRQYVAQIPQLPNTEVWFQRPKDI 133

Query:   138 VRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLR 197
             VRKLLSGDLDLGIVGLD V EFGQGNEDLIIVH+AL++GDC LSLAIP YGIFENI SL+
Sbjct:   134 VRKLLSGDLDLGIVGLDIVGEFGQGNEDLIIVHEALNFGDCHLSLAIPNYGIFENIKSLK 193

Query:   198 ELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRI 250
             ELAQMPQWT E+PLRVATGFTYLGPKFMKDNG+KHV FSTADGALEAAPA+ I
Sbjct:   194 ELAQMPQWTEERPLRVATGFTYLGPKFMKDNGIKHVTFSTADGALEAAPAMGI 246
GO:0000105 "histidine biosynthetic process" evidence=IEA;ISS;IDA
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0003879 "ATP phosphoribosyltransferase activity" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006567 "threonine catabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
TAIR|locus:2196287 ATP-PRT1 "ATP phosphoribosyl transferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1769 CJE_1769 "ATP phosphoribosyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3889 CPS_3889 "ATP phosphoribosyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2074 SO_2074 "ATP phosphoribosyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
ASPGD|ASPL0000017044 AN3748 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC25G10.05c his1 "ATP phosphoribosyltransferase" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|P60757 hisG "HisG" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0669 SPO_0669 "ATP phosphoribosyltransferase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSX4 hisG "ATP phosphoribosyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.691
4th Layer2.4.2.170.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00035413001
SubName- Full=Chromosome chr12 scaffold_78, whole genome shotgun sequence; (390 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037970001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (289 aa)
• •• •• 0.998
GSVIVG00002274001
RecName- Full=Histidinol dehydrogenase; EC=1.1.1.23;; Catalyzes the sequential NAD-dependent ox [...] (438 aa)
• •• •• 0.992
GSVIVG00019988001
RecName- Full=Imidazoleglycerol-phosphate dehydratase; EC=4.2.1.19; (180 aa)
• ••  • 0.974
GSVIVG00027290001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (570 aa)
• ••  • 0.954
GSVIVG00024606001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (288 aa)
• ••  • 0.893
GSVIVG00031801001
SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (269 aa)
• ••  • 0.880
GSVIVG00018977001
RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (322 aa)
     •• 0.833
GSVIVG00015830001
RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (321 aa)
     •• 0.832
GSVIVG00027272001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (403 aa)
•     • 0.786
GSVIVG00023243001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (505 aa)
•     • 0.749

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
PLN02245 403 PLN02245, PLN02245, ATP phosphoribosyl transferase 1e-133
PRK00489 287 PRK00489, hisG, ATP phosphoribosyltransferase; Rev 4e-29
TIGR00070182 TIGR00070, hisG, ATP phosphoribosyltransferase 1e-28
pfam01634161 pfam01634, HisG, ATP phosphoribosyltransferase 4e-27
COG0040 290 COG0040, HisG, ATP phosphoribosyltransferase [Amin 9e-27
PRK13583228 PRK13583, hisG, ATP phosphoribosyltransferase cata 7e-15
PRK01686215 PRK01686, hisG, ATP phosphoribosyltransferase cata 1e-09
>gnl|CDD|215136 PLN02245, PLN02245, ATP phosphoribosyl transferase Back     alignment and domain information 
 Score =  382 bits (983), Expect = e-133
 Identities = 159/239 (66%), Positives = 176/239 (73%), Gaps = 6/239 (2%)

Query: 12  PYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVN 71
                  S  PS      P SS    + +             T CVS  Q      S  +
Sbjct: 4   LSQSPSLSSLPSSSPLLSPPSSRASRLIAPRRRCL----RLATACVSQVQSSVVAGSTDS 59

Query: 72  GNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWF 131
            +  + +S R +IRLGLPSKGRMA DTLDLLKDCQLSVK+VNPRQYVA+IPQL NLEVWF
Sbjct: 60  AS--SVVSSRTQIRLGLPSKGRMAEDTLDLLKDCQLSVKKVNPRQYVAEIPQLPNLEVWF 117

Query: 132 QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE 191
           QRPKDIVRKLLSGDLDLGIVG D + E+GQGNEDL+IVHDAL +GDC LS+AIPKYGIFE
Sbjct: 118 QRPKDIVRKLLSGDLDLGIVGYDMLREYGQGNEDLVIVHDALGFGDCHLSIAIPKYGIFE 177

Query: 192 NINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRI 250
           NINSL+ELAQMPQWT E+PLRV TGFTYLGPKFMKDNG KHV FSTADGALEAAPA+ I
Sbjct: 178 NINSLKELAQMPQWTEERPLRVVTGFTYLGPKFMKDNGFKHVTFSTADGALEAAPAMGI 236

Length = 403
>gnl|CDD|234781 PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|232809 TIGR00070, hisG, ATP phosphoribosyltransferase Back     alignment and domain information
>gnl|CDD|110621 pfam01634, HisG, ATP phosphoribosyltransferase Back     alignment and domain information
>gnl|CDD|223118 COG0040, HisG, ATP phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|237438 PRK13583, hisG, ATP phosphoribosyltransferase catalytic subunit; Provisional Back     alignment and domain information
>gnl|CDD|234971 PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
PLN02245 403 ATP phosphoribosyl transferase 100.0
PRK13583228 hisG ATP phosphoribosyltransferase catalytic subun 100.0
PRK01686215 hisG ATP phosphoribosyltransferase catalytic subun 100.0
TIGR00070182 hisG ATP phosphoribosyltransferase. Members of thi 100.0
COG0040 290 HisG ATP phosphoribosyltransferase [Amino acid tra 100.0
PRK13584204 hisG ATP phosphoribosyltransferase catalytic subun 100.0
PF01634163 HisG: ATP phosphoribosyltransferase; InterPro: IPR 100.0
KOG2831 308 consensus ATP phosphoribosyltransferase [Amino aci 100.0
PRK00489 287 hisG ATP phosphoribosyltransferase; Reviewed 99.97
TIGR01728 288 SsuA_fam ABC transporter, substrate-binding protei 95.93
PRK11063271 metQ DL-methionine transporter substrate-binding s 95.89
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 95.45
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 95.31
PRK11553 314 alkanesulfonate transporter substrate-binding subu 94.39
PRK11480 320 tauA taurine transporter substrate binding subunit 93.82
TIGR00363258 lipoprotein, YaeC family. This family of putative 93.23
TIGR01729 300 taurine_ABC_bnd taurine ABC transporter, periplasm 92.38
PRK09861272 cytoplasmic membrane lipoprotein-28; Provisional 91.16
PF03466209 LysR_substrate: LysR substrate binding domain; Int 90.81
cd08442193 PBP2_YofA_SoxR_like The C-terminal substrate bindi 89.03
cd08468202 PBP2_Pa0477 The C-terminal substrate biniding doma 88.53
cd08467200 PBP2_SyrM The C-terminal substrate binding of LysR 87.92
cd08437198 PBP2_MleR The substrate binding domain of LysR-typ 87.73
cd08418201 PBP2_TdcA The C-terminal substrate binding domain 87.35
cd08440197 PBP2_LTTR_like_4 TThe C-terminal substrate binding 86.84
cd08453200 PBP2_IlvR The C-terminal substrate binding domain 86.83
cd00134218 PBPb Bacterial periplasmic transport systems use m 86.55
cd08417200 PBP2_Nitroaromatics_like The C-terminal substrate 86.27
cd08450196 PBP2_HcaR The C-terminal substrate binding domain 85.97
cd08459201 PBP2_DntR_NahR_LinR_like The C-terminal substrate 85.89
cd08451199 PBP2_BudR The C-terminal substrate binding domain 85.74
cd08460200 PBP2_DntR_like_1 The C-terminal substrate binding 85.71
cd08463203 PBP2_DntR_like_4 The C-terminal substrate binding 85.42
cd08461198 PBP2_DntR_like_3 The C-terminal substrate binding 85.42
cd08449197 PBP2_XapR The C-terminal substrate binding domain 85.39
cd08435201 PBP2_GbpR The C-terminal substrate binding domain 85.29
cd08464200 PBP2_DntR_like_2 The C-terminal substrate binding 85.17
cd08436194 PBP2_LTTR_like_3 The C-terminal substrate binding 84.45
cd08416199 PBP2_MdcR The C-terminal substrate-binding domian 84.21
cd08426199 PBP2_LTTR_like_5 The C-terminal substrate binding 84.13
cd08456196 PBP2_LysR The C-terminal substrate binding domain 84.06
cd08465200 PBP2_ToxR The C-terminal substrate binding domain 83.86
cd08434195 PBP2_GltC_like The substrate binding domain of Lys 83.44
cd08433198 PBP2_Nac The C-teminal substrate binding domain of 83.4
cd08462200 PBP2_NodD The C-terminal substsrate binding domain 83.08
cd08421198 PBP2_LTTR_like_1 The C-terminal substrate binding 82.84
cd08448197 PBP2_LTTR_aromatics_like_2 The C-terminal substrat 82.67
cd08438197 PBP2_CidR The C-terminal substrate binding domain 82.36
TIGR02122 320 TRAP_TAXI TRAP transporter solute receptor, TAXI f 82.04
cd08458196 PBP2_NocR The C-terminal substrate-domain of LysR- 81.29
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 80.86
cd08486198 PBP2_CbnR The C-terminal substrate binding domain 80.72
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 80.57
cd08427195 PBP2_LTTR_like_2 The C-terminal substrate binding 80.25
>PLN02245 ATP phosphoribosyl transferase Back     alignment and domain information 
Probab=100.00  E-value=1.8e-61  Score=460.37  Aligned_cols=232  Identities=69%  Similarity=1.072  Sum_probs=205.9

Q ss_pred             cccCCCCCCCcccccCCccceeeeccCCcccCCCcccceeeeecccccccceeeeecCcccCC--CCCCCceEEEecCCC
Q 025329           15 RQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNR--ISERDEIRLGLPSKG   92 (254)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LrIALPsKG   92 (254)
                      .+|++.+||++++++|.++.+++.+. |++   .|++..++|.++.++.    .+.+.....+  +.++.+|||||||||
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~LriAlPsKG   78 (403)
T PLN02245          7 SPSLSSLPSSSPLLSPPSSRASRLIA-PRR---RCLRLATACVSQVQSS----VVAGSTDSASSVVSSRTQIRLGLPSKG   78 (403)
T ss_pred             ccccCCccccccccCCCCcCceeeec-chh---hhhhhheeeecccchh----hhcccccccCccccCCceEEEEECCCC
Confidence            34445688999999999998888887 888   8999999999888772    2223333333  688889999999999


Q ss_pred             CChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecccCCCcceeeecCC
Q 025329           93 RMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDA  172 (254)
Q Consensus        93 RL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d~~~l~~~l~d  172 (254)
                      ||+|++++||++|||++...++|+|++.+.+.|+++|+|+||+|||+||++|.+|+||||+|||.|++.+..+++++++|
T Consensus        79 RL~e~t~~LL~~aGl~~~~~~~R~L~~~~~~~~~iev~flR~~DIp~yV~~G~~DlGItG~D~l~E~~~~~~~~v~~l~~  158 (403)
T PLN02245         79 RMAEDTLDLLKDCQLSVKKVNPRQYVAEIPQLPNLEVWFQRPKDIVRKLLSGDLDLGIVGYDMLREYGQGNEDLVIVHDA  158 (403)
T ss_pred             ccHHHHHHHHHHcCCCCCCCCCceeEEEcCCCCceEEEEECHHHHHHHHhCCCccEEEeeeeeeeccCCCccceEEEeec
Confidence            99999999999999999876569999998877889999999999999999999999999999999998776778888889


Q ss_pred             CCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCCceecccCCCccc
Q 025329          173 LDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITH  252 (254)
Q Consensus       173 LgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~GSvElAP~lGlAD  252 (254)
                      ||||+|||+||+|+++.|.++++++||+++..|..++++||||||||||++||+++|+++++|++++||||+||.+|+||
T Consensus       159 LgFG~crlvvAvP~~~~~~~~~s~~dL~g~~~~~~~~~~RIATkYp~ltr~ff~~~Gv~~v~Iv~l~GAvE~AP~lGlAD  238 (403)
T PLN02245        159 LGFGDCHLSIAIPKYGIFENINSLKELAQMPQWTEERPLRVVTGFTYLGPKFMKDNGFKHVTFSTADGALEAAPAMGIAD  238 (403)
T ss_pred             CCCCceEEEEEEEccCCccccCCHHHhcccccccccCceEEEeCCHHHHHHHHHHcCCCeEEEEECcCceecccccCchh
Confidence            99999999999999866888999999997777777888999999999999999999996699999999999999999999


Q ss_pred             cC
Q 025329          253 LL  254 (254)
Q Consensus       253 aI  254 (254)
                      +|
T Consensus       239 aI  240 (403)
T PLN02245        239 AI  240 (403)
T ss_pred             hh
Confidence            98

>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional Back     alignment and domain information
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed Back     alignment and domain information
>TIGR00070 hisG ATP phosphoribosyltransferase Back     alignment and domain information
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional Back     alignment and domain information
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2 Back     alignment and domain information
>KOG2831 consensus ATP phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional Back     alignment and domain information
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins [] Back     alignment and domain information
>cd08442 PBP2_YofA_SoxR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08468 PBP2_Pa0477 The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08437 PBP2_MleR The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold Back     alignment and domain information
>cd08418 PBP2_TdcA The C-terminal substrate binding domain of LysR-type transcriptional regulator TdcA, which is involved in the degradation of L-serine and L-threonine, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08440 PBP2_LTTR_like_4 TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08453 PBP2_IlvR The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08450 PBP2_HcaR The C-terminal substrate binding domain of LysR-type transcriptional regulator HcaR in involved in 3-phenylpropionic acid catabolism, contains the type2 periplasmic binding fold Back     alignment and domain information
>cd08459 PBP2_DntR_NahR_LinR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08451 PBP2_BudR The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08460 PBP2_DntR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08463 PBP2_DntR_like_4 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08461 PBP2_DntR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08449 PBP2_XapR The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08435 PBP2_GbpR The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08464 PBP2_DntR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08416 PBP2_MdcR The C-terminal substrate-binding domian of LysR-type transcriptional regulator MdcR, which involved in the malonate catabolism contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08426 PBP2_LTTR_like_5 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08456 PBP2_LysR The C-terminal substrate binding domain of LysR, transcriptional regulator for lysine biosynthesis, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08465 PBP2_ToxR The C-terminal substrate binding domain of LysR-type transcriptional regulator ToxR regulates the expression of the toxoflavin biosynthesis genes; contains the type 2 periplasmic bindinig fold Back     alignment and domain information
>cd08434 PBP2_GltC_like The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold Back     alignment and domain information
>cd08433 PBP2_Nac The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08462 PBP2_NodD The C-terminal substsrate binding domain of NodD family of LysR-type transcriptional regulators that regulates the expression of nodulation (nod) genes; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08421 PBP2_LTTR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08448 PBP2_LTTR_aromatics_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold Back     alignment and domain information
>cd08438 PBP2_CidR The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family Back     alignment and domain information
>cd08458 PBP2_NocR The C-terminal substrate-domain of LysR-type transcriptional regulator, NocR, involved in the catabolism of nopaline, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>cd08486 PBP2_CbnR The C-terminal substrate binding domain of LysR-type transcriptional regulator, CbnR, involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>cd08427 PBP2_LTTR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
2vd3_A 289 The Structure Of Histidine Inhibited Hisg From Meth 3e-10
1h3d_A 299 Structure Of The E.Coli Atp-Phosphoribosyltransfera 8e-07
1nh7_A 304 Atp Phosphoribosyltransferase (Atp-Prtase) From Myc 3e-06
>pdb|2VD3|A Chain A, The Structure Of Histidine Inhibited Hisg From Methanobacterium Thermoautotrophicum Length = 289 Back     alignment and structure 
Iteration: 1

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 83  EIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLL 142
           +IR+ +PSKGR++   + LL++  + +K    R+  ++  Q   +EV F R  DI   + 
Sbjct: 4   KIRIAVPSKGRISEPAIRLLENAGVGLKDTVNRKLFSK-TQHPQIEVMFSRAADIPEFVA 62
Query: 143 SGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQM 202
            G  DLGI G D + E G    D+ I+ D L YG   L LA P+       +++R    +
Sbjct: 63  DGAADLGITGYDLIVERGS---DVEILED-LKYGRASLVLAAPED------STIRGPEDI 112
Query: 203 PQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL 254
           P+        +AT F  +   +++++G+   V     G+ E AP + +  L+
Sbjct: 113 PRGAV-----IATEFPGITENYLREHGIDAEVVELT-GSTEIAPFIGVADLI 158
>pdb|1H3D|A Chain A, Structure Of The E.Coli Atp-Phosphoribosyltransferase Length = 299 Back     alignment and structure
>pdb|1NH7|A Chain A, Atp Phosphoribosyltransferase (Atp-Prtase) From Mycobacterium Tuberculosis Length = 304 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
1h3d_A 299 ATP-phosphoribosyltransferase; hisitidine biosynth 1e-46
2vd3_A 289 ATP phosphoribosyltransferase; metal-binding, glyc 1e-43
1nh8_A 304 ATP phosphoribosyltransferase; prtase, de novo His 1e-41
1ve4_A206 ATP phosphoribosyltransferase; riken structural ge 1e-27
1z7m_E208 ATP phosphoribosyltransferase; ATP-PRT, histidine 3e-25
2vd2_A214 ATP phosphoribosyltransferase; HISG, glycosyltrans 3e-25
1o63_A219 ATP phosphoribosyltransferase; structural genomics 5e-25
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A* Length = 299 Back     alignment and structure
 Score =  155 bits (395), Expect = 1e-46
 Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 20/175 (11%)

Query: 79  SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIV 138
           ++   +R+ +   GR++ D+ +LL  C + +  ++ ++ +A    +  +++   R  DI 
Sbjct: 2   TDNTRLRIAMQKSGRLSDDSRELLARCGIKIN-LHTQRLIAMAENM-PIDILRVRDDDIP 59

Query: 139 RKLLSGDLDLGIVGLDTVSEFG-----QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENI 193
             ++ G +DLGI+G + + E       QG +        LD+G CRLSLA P    ++  
Sbjct: 60  GLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGP 119

Query: 194 NSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAV 248
            SL               R+AT + +L  +++   G+        +G++E AP  
Sbjct: 120 LSLNG------------KRIATSYPHLLKRYLDQKGISFKSC-LLNGSVEVAPRA 161
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum} Length = 289 Back     alignment and structure
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A* Length = 304 Back     alignment and structure
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1 Length = 206 Back     alignment and structure
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E* Length = 208 Back     alignment and structure
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis} Length = 214 Back     alignment and structure
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H* Length = 219 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
2vd3_A 289 ATP phosphoribosyltransferase; metal-binding, glyc 100.0
1ve4_A206 ATP phosphoribosyltransferase; riken structural ge 100.0
2vd2_A214 ATP phosphoribosyltransferase; HISG, glycosyltrans 100.0
1nh8_A 304 ATP phosphoribosyltransferase; prtase, de novo His 100.0
1z7m_E208 ATP phosphoribosyltransferase; ATP-PRT, histidine 100.0
1h3d_A 299 ATP-phosphoribosyltransferase; hisitidine biosynth 100.0
1o63_A219 ATP phosphoribosyltransferase; structural genomics 100.0
3ix1_A 302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 96.53
3qsl_A 346 Putative exported protein; unknown, structural gen 96.08
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 95.47
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 94.8
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 94.46
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 94.35
2x26_A 308 Periplasmic aliphatic sulphonates-binding protein; 94.13
4esw_A 342 Pyrimidine biosynthesis enzyme THI13; thiamin pyri 94.06
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 93.97
4ef1_A246 Pheromone COB1/lipoprotein, YAEC family; periplasm 93.93
3kzg_A237 Arginine 3RD transport system periplasmic binding 93.41
3ksx_A 324 Nitrate transport protein; SSUA, alkanesulfonate-b 93.36
3uif_A 348 Sulfonate ABC transporter, periplasmic sulfonate- 93.35
3un6_A 341 Hypothetical protein saouhsc_00137; structural gen 93.3
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 92.39
2yln_A283 Putative ABC transporter, periplasmic binding Pro 92.3
1xt8_A292 Putative amino-acid transporter periplasmic solut 92.27
2q88_A257 EHUB, putative ABC transporter amino acid-binding 92.27
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 91.92
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 91.59
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 91.24
2vha_A 287 Periplasmic binding transport protein; periplasmic 90.92
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 90.0
4got_A249 Methionine-binding lipoprotein METQ; NLPA lipoprot 89.38
3tql_A227 Arginine-binding protein; transport and binding pr 89.04
3hv1_A268 Polar amino acid ABC uptake transporter substrate 88.81
2x7q_A 321 Ca3427, possible thiamine biosynthesis enzyme; unk 88.81
4ab5_A222 Transcriptional regulator, LYSR family; transcript 88.68
3ho7_A232 OXYR; beta-alpha-barrels, DNA-binding, transcripti 88.29
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 88.22
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 88.12
3fxq_A305 LYSR type regulator of TSAMBCD; transcriptional re 87.87
3tqw_A240 Methionine-binding protein; transport and binding 87.75
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 87.53
1xs5_A241 29 kDa protein, membrane lipoprotein TPN32; peripl 86.79
2zzv_A 361 ABC transporter, solute-binding protein; periplasm 86.01
2hzl_A 365 Trap-T family sorbitol/mannitol transporter, perip 85.79
3gxa_A275 Outer membrane lipoprotein GNA1946; periplasmic, L 85.38
3del_B242 Arginine binding protein; alpha and beta protein ( 85.28
3qax_A268 Probable ABC transporter arginine-binding protein; 84.81
2esn_A310 Probable transcriptional regulator; PA0477, APC582 84.72
4eq9_A246 ABC transporter substrate-binding protein-amino A 84.36
3k2d_A237 ABC-type metal ION transport system, periplasmic; 84.3
3ir1_A245 Outer membrane lipoprotein GNA1946; D-methionine c 84.21
1us5_A 314 Putative GLUR0 ligand binding core; receptor, memb 84.04
2y7p_A218 LYSR-type regulatory protein; transcription regula 83.94
4ddd_A 327 Immunogenic protein; ssgcid, structural genomics, 83.7
1ixc_A294 CBNR, LYSR-type regulatory protein; long alpha hel 83.15
3k4u_A245 Binding component of ABC transporter; structural g 82.52
3up9_A245 Putative uncharacterized protein; membrane lipopro 82.15
2fyi_A228 HTH-type transcriptional regulator CBL; Lys-R fami 81.42
2pfz_A 301 Putative exported protein; extracytoplasmic solute 80.65
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum} Back     alignment and structure
Probab=100.00  E-value=6.8e-53  Score=386.75  Aligned_cols=156  Identities=28%  Similarity=0.526  Sum_probs=141.6

Q ss_pred             CceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecccC
Q 025329           82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQ  161 (254)
Q Consensus        82 ~~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~  161 (254)
                      +||||||||||||++++++||++|||++...++|+|++.+.+ ++++++|+||+|||+||++|.+|+||||+|||.|++.
T Consensus         3 ~mL~iAlpkkGRL~e~t~~ll~~aGi~~~~~~~R~l~~~~~~-~~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~   81 (289)
T 2vd3_A            3 PKIRIAVPSKGRISEPAIRLLENAGVGLKDTVNRKLFSKTQH-PQIEVMFSRAADIPEFVADGAADLGITGYDLIVERGS   81 (289)
T ss_dssp             CCEEEEEESSSTTHHHHHHHHHHTTCCEESCCTTCSEEEESS-TTEEEEEECTTTHHHHHHHTSSSEEEEEHHHHHHHTC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHCCCCCCCCCCceeEEEcCC-CCEEEEEEChhhHHHHHhCCCccEEEeeeeeeeecCC
Confidence            369999998899999999999999999988666999999877 6899999999999999999999999999999999986


Q ss_pred             CCcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCCc
Q 025329          162 GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGA  241 (254)
Q Consensus       162 d~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~GS  241 (254)
                      +   +++++ |||||+|||+||+|++  | ++++++||.        .++||||||||+|++||+++|++ ++|++++||
T Consensus        82 ~---v~el~-dLgfG~crl~vAvp~~--~-~~~~~~~l~--------~~~RIATkyp~l~~~yf~~~gi~-~~ii~l~Gs  145 (289)
T 2vd3_A           82 D---VEILE-DLKYGRASLVLAAPED--S-TIRGPEDIP--------RGAVIATEFPGITENYLREHGID-AEVVELTGS  145 (289)
T ss_dssp             C---CEEEE-ECSCSCEEEEEEEETT--S-SCCSGGGCC--------TTCEEEESCHHHHHHHHHHTTCC-CEEEECSSC
T ss_pred             C---ceEEe-cCCCCCEEEEEEEECC--C-CCCCHHHhc--------CCCEEEeCcHHHHHHHHHHcCCc-EEEEECCCc
Confidence            5   44433 8999999999999999  4 566777762        15899999999999999999995 999999999


Q ss_pred             eecccCCCccccC
Q 025329          242 LEAAPAVRITHLL  254 (254)
Q Consensus       242 vElAP~lGlADaI  254 (254)
                      +|+||.+|+||+|
T Consensus       146 vE~ap~~GlADaI  158 (289)
T 2vd3_A          146 TEIAPFIGVADLI  158 (289)
T ss_dssp             GGGTTTTTSCSEE
T ss_pred             eeeccCCCcccEE
Confidence            9999999999997
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1 Back     alignment and structure
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis} Back     alignment and structure
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A* Back     alignment and structure
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E* Back     alignment and structure
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A* Back     alignment and structure
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H* Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A* Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A* Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp} Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Back     alignment and structure
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A Back     alignment and structure
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis} Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* Back     alignment and structure
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii} Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Back     alignment and structure
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A Back     alignment and structure
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A Back     alignment and structure
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis} Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1 Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus} Back     alignment and structure
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis} Back     alignment and structure
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Back     alignment and structure
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A Back     alignment and structure
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0 Back     alignment and structure
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1 Back     alignment and structure
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d1h3da1220 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase ( 5e-25
d1z7me1204 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase ( 2e-21
d1nh8a1210 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase ( 1e-19
d1ve4a1206 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase ( 3e-17
d1o63a_203 c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-P 5e-15
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Escherichia coli [TaxId: 562]} Length = 220 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain
species: Escherichia coli [TaxId: 562]

 Score = 96.6 bits (240), Expect = 5e-25
 Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 20/176 (11%)

Query: 84  IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
           +R+ +   GR++ D+ +LL  C + +  ++ ++ +A    +  +++   R  DI   ++ 
Sbjct: 3   LRIAMQKSGRLSDDSRELLARCGIKIN-LHTQRLIAMAENM-PIDILRVRDDDIPGLVMD 60

Query: 144 GDLDLGIVGLDTVSEFG-----QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRE 198
           G +DLGI+G + + E       QG +        LD+G CRLSLA P    ++   SL  
Sbjct: 61  GVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPLSLN- 119

Query: 199 LAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAVRITHLL 254
                        R+AT + +L  +++   G         +G++E AP   +   +
Sbjct: 120 -----------GKRIATSYPHLLKRYLDQKG-ISFKSCLLNGSVEVAPRAGLADAI 163
>d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Lactococcus lactis [TaxId: 1358]} Length = 204 Back     information, alignment and structure
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 210 Back     information, alignment and structure
>d1ve4a1 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermus thermophilus [TaxId: 274]} Length = 206 Back     information, alignment and structure
>d1o63a_ c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 203 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d1nh8a1210 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1h3da1220 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1ve4a1206 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1z7me1204 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1o63a_203 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 100.0
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 83.27
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 83.24
d2fyia1220 LysR-type regulatory protein Cbl {Escherichia coli 81.83
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.8e-51  Score=357.23  Aligned_cols=152  Identities=27%  Similarity=0.468  Sum_probs=136.2

Q ss_pred             ceEEEecCCCCChHHHHHHHHhCCCccCCCCCCceEeecCCCCCeEEEeecCcchhhhhhcCceeeeeeccceeecccCC
Q 025329           83 EIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQG  162 (254)
Q Consensus        83 ~LrIALPsKGRL~e~tl~LL~~aGi~v~~~~~R~L~~~~~~~p~iev~~vRp~DIp~yV~~G~aDlGIvG~DvL~E~~~d  162 (254)
                      |||||||+||||+++++++|++|||++.. ++|+|.+... .++++++++||+|||+||++|.+|+||||+|||.|++.+
T Consensus         1 mlrialP~KGrL~~~~~~ll~~~gi~~~~-~~r~~~~~~~-~~~i~v~~~R~~DIp~~V~~G~~DlGI~G~D~l~E~~~~   78 (210)
T d1nh8a1           1 MLRVAVPNKGALSEPATEILAEAGYRRRT-DSKDLTVIDP-VNNVEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSGAQ   78 (210)
T ss_dssp             CEEEEEESSSTTHHHHHHHHHHTTCCCCC-STTCSEEEET-TTTEEEEEECGGGHHHHHHHSSCSEEEEEHHHHHHHTCC
T ss_pred             CeEEEeCCCCcCHHHHHHHHHHCCCCccC-CCceEEeecC-CCCeEEEEeCHHHHHHHHHhccCceeeecHHHHhhcccc
Confidence            79999999999999999999999999866 5799988765 478999999999999999999999999999999999876


Q ss_pred             CcceeeecCCCCcccEEEEEEEeCCCccccccchHHhhcCCcccCCCCcEEEcCCCccHHHHHHHcCCceEEEEEcCCce
Q 025329          163 NEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGAL  242 (254)
Q Consensus       163 ~~~l~~~l~dLgfG~CRLvVAvP~~~~~~dv~sl~dL~~~~~~~~~r~lRVATkYPnLarkyf~~~Gi~~veIi~l~GSv  242 (254)
                         ++++ .|||||+|||++|+|++..|    +.+|+.         ++||||||||+|++||+++|++ ++||+++||+
T Consensus        79 ---v~~~-~dL~fG~c~l~vA~p~~~~~----~~~~l~---------~~rIATkYpnit~~ff~~~gi~-~~ii~~~Ga~  140 (210)
T d1nh8a1          79 ---VRER-LALGFGSSSFRYAAPAGRNW----TTADLA---------GMRIATAYPNLVRKDLATKGIE-ATVIRLDGAV  140 (210)
T ss_dssp             ---EEEE-EECSCCCEEEEEEEETTSCC----CGGGGT---------TCEEEESCHHHHHHHHHHHTCC-CEEEECSSCC
T ss_pred             ---hhhh-hcccccceEEEEEeecCCCC----Chhhhc---------CCEEeeehHHHHHHHHHHcCCc-eeEEEEecCc
Confidence               4433 48999999999999998544    234432         5899999999999999999995 9999999999


Q ss_pred             ecccCCCccccC
Q 025329          243 EAAPAVRITHLL  254 (254)
Q Consensus       243 ElAP~lGlADaI  254 (254)
                      |+||.+|+||+|
T Consensus       141 E~ap~~g~AD~I  152 (210)
T d1nh8a1         141 EISVQLGVADAI  152 (210)
T ss_dssp             THHHHTTSCSEE
T ss_pred             cccccCCcceEE
Confidence            999999999997
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ve4a1 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1o63a_ c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]} Back     information, alignment and structure