Citrus Sinensis ID: 025343

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MSSVFSSKSNHMYLNKSKAQEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANSGSSM
Secondary Structure (PSIPRED)
cccccccccccEEEcHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccHHccccccccccccccHHHcccccccccccHHHcccccccccccHHHHHHHccHHHHHHHHHcccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEcccccccccEEEccccccccccccccccccccccccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccEccccHHHHHHHHHHHHcccEEEEccEEEEcccccEEEEcEEEEccHHHHHHHHHHHHHHHHcccccccEEEEccEEEcccccccHHHHHcccccccEEEEEccccccccccccHHHHHHHccHHHHHHHHHcccccccccHHHHccccEEEEEcccccEEEEHHHEEcccccccEEcccccccEEEEcccccEEEEEEEcccccccccEEcccccccccccEEEEcccEEEEccHHHHHHc
Coil and Loop (DISEMBL)
mssvfssksnhmylNKSKAQEQKSRKaqmgfnvlktspvscssrtfSSVLsnlnfihsptttrLFTNRLNslapsllklkpltvtgtgcisssgfyrslrFEQNKRSFRGGVVLAVAsgpasvnksEEEWRAILSPEQFRILRQKateypgtgeydkhfeegiyncsacgtplyksttkfnsgcgwpafyeglpgaincspdpdglriEITCAacgghlghvfkgegfptptderhcvnsislkfvpansgssm
Flexible Loop (DISEMBL)
mssvfssksnhmylnKSKAQEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASgpasvnkseeEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSIslkfvpansgssm
Low Complexity Region (SEG)
MSSVFSSKSNHMYLNKSKAQEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRlnslapsllklkplTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANSGSSM
Disordered region (IsUnstruct)
****************************************C*SRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVAS**********EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKF*********
Disordered Region (DISOPRED)
*********************************LKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLF***************PLTVTGTGCISSSGFY********************************EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKF*********
Disordered Region (DISEMBL)
**************************AQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVAS*********EEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANSGSSM
Disordered Region (DISPRO)
***************KSKAQEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANSG**M
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSVFSSKSNHMYLNKSKAQEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANSGSSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q9C5C8	202	Peptide methionine sulfox	yes	no	0.570	0.717	0.801	2e-67
Q6AUK5	229	Peptide methionine sulfox	yes	no	0.519	0.576	0.825	5e-63
Q9ZS91	139	Peptide methionine sulfox	no	no	0.547	1.0	0.755	4e-60
Q10L32	136	Peptide methionine sulfox	no	no	0.535	1.0	0.742	9e-60
Q9M0Z6	176	Peptide methionine sulfox	no	no	0.586	0.846	0.706	7e-59
Q9M0Z5	139	Peptide methionine sulfox	no	no	0.511	0.935	0.753	2e-55
Q84JT6	143	Peptide methionine sulfox	no	no	0.515	0.916	0.687	3e-52
O49707	143	Peptide methionine sulfox	no	no	0.547	0.972	0.631	2e-51
Q8VY86	144	Peptide methionine sulfox	no	no	0.511	0.902	0.669	2e-50
Q8GWF4	153	Peptide methionine sulfox	no	no	0.496	0.823	0.682	5e-49

>sp|Q9C5C8|MSRB2_ARATH Peptide methionine sulfoxide reductase B2, chloroplastic OS=Arabidopsis thaliana GN=MSRB2 PE=1 SV=1

 Score =  255 bits (651), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 130/146 (89%), Gaps = 1/146 (0%)

Query: 105 KRSFRGGVVLAV-ASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGI 163
           +R F GG ++A+ +S P SVNK EEEWRAILSPEQFRILRQK TEYPGTGEY+K F++GI
Sbjct: 54  RRGFHGGRIVAMGSSAPESVNKPEEEWRAILSPEQFRILRQKGTEYPGTGEYNKVFDDGI 113

Query: 164 YNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVF 223
           Y C+ CGTPLYKSTTKF+SGCGWPAF++GLPGAI  +PDPDG RIEITCAACGGHLGHVF
Sbjct: 114 YCCAGCGTPLYKSTTKFDSGCGWPAFFDGLPGAITRTPDPDGRRIEITCAACGGHLGHVF 173

Query: 224 KGEGFPTPTDERHCVNSISLKFVPAN 249
           KGEGFPTPTDERHCVNSISLKF P N
Sbjct: 174 KGEGFPTPTDERHCVNSISLKFTPEN 199

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Specifically reduces the MetSO R-enantiomer. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. May play an essential function in association with MSRB1 in maintaining vegetative growth during environmental constraints, through the preservation of photosynthetic antennae. MSRB1 and MSRB2 account for most of the leaf peptide MSR capacity.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q6AUK5|MSRB3_ORYSJ Peptide methionine sulfoxide reductase B3, chloroplastic OS=Oryza sativa subsp. japonica GN=MSRB3 PE=2 SV=1

 Score =  241 bits (614), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 109/132 (82%), Positives = 116/132 (87%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           V KSEEEW AILSPEQFRILR K TEYPGTGEYDK F EG+Y C+ CGTPLYKS+TKFNS
Sbjct: 98  VQKSEEEWEAILSPEQFRILRLKGTEYPGTGEYDKLFAEGVYECAGCGTPLYKSSTKFNS 157

Query: 183 GCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSIS 242
           GCGWPAFYEG PGAI  +PDPDG RIEITCAACGGHLGHVFKGEGF TPTDERHCVNSIS
Sbjct: 158 GCGWPAFYEGFPGAIARTPDPDGRRIEITCAACGGHLGHVFKGEGFNTPTDERHCVNSIS 217

Query: 243 LKFVPANSGSSM 254
           LKF+PA+  S +
Sbjct: 218 LKFIPASEDSKL 229

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9ZS91|MSRB5_ARATH Peptide methionine sulfoxide reductase B5 OS=Arabidopsis thaliana GN=MSRB5 PE=2 SV=1

 Score =  231 bits (589), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 105/139 (75%), Positives = 118/139 (84%)

Query: 116 VASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYK 175
           +A+ P  V K+EEEWRA+LSPEQFRILRQK TE PGTGEYDK FEEGI++C  C TPLYK
Sbjct: 1   MAASPLVVQKTEEEWRAVLSPEQFRILRQKGTEKPGTGEYDKFFEEGIFDCVGCKTPLYK 60

Query: 176 STTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDER 235
           STTKF+SGCGWPAF+EGLPGAIN +PDPDG R EITCAAC GHLGHVFKGEG+  PTDER
Sbjct: 61  STTKFDSGCGWPAFFEGLPGAINRTPDPDGRRTEITCAACDGHLGHVFKGEGYGNPTDER 120

Query: 236 HCVNSISLKFVPANSGSSM 254
           HCVNS+S+ F PA S S +
Sbjct: 121 HCVNSVSISFNPAKSSSII 139

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q10L32|MSRB5_ORYSJ Peptide methionine sulfoxide reductase B5 OS=Oryza sativa subsp. japonica GN=MSRB5 PE=2 SV=1

 Score =  230 bits (586), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 119/136 (87%)

Query: 114 LAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPL 173
           +A +   +   +S+EEWRA+LSPEQFRILR K TE PGTGEY+K + +G+YNC+ CGTPL
Sbjct: 1   MASSGDSSGKQRSDEEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPL 60

Query: 174 YKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTD 233
           YKSTTKF+SGCGWPAF+EGLPGAIN +PDPDG R+EITCAACGGHLGHVFKGEGF TPTD
Sbjct: 61  YKSTTKFDSGCGWPAFFEGLPGAINRTPDPDGRRVEITCAACGGHLGHVFKGEGFKTPTD 120

Query: 234 ERHCVNSISLKFVPAN 249
           ERHCVNS+S+KF PA+
Sbjct: 121 ERHCVNSVSIKFTPAS 136

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9M0Z6|MSRB3_ARATH Peptide methionine sulfoxide reductase B3 OS=Arabidopsis thaliana GN=MSRB3 PE=2 SV=2

 Score =  227 bits (578), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 116/150 (77%), Gaps = 1/150 (0%)

Query: 102 EQNKRSFRGGVVLAVA-SGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFE 160
           E +      GV   VA + P SV K +EEWRAILSPEQFRILRQK TEYPGTGEY    +
Sbjct: 25  ESDSICLSSGVASTVAMAAPGSVQKGDEEWRAILSPEQFRILRQKGTEYPGTGEYVNFDK 84

Query: 161 EGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLG 220
           EG+Y C  C  PLYKSTTKFN+GCGWPAF+EG+PGAI  + DPDG RIEI CA CGGHLG
Sbjct: 85  EGVYGCVGCNAPLYKSTTKFNAGCGWPAFFEGIPGAITRTTDPDGRRIEINCATCGGHLG 144

Query: 221 HVFKGEGFPTPTDERHCVNSISLKFVPANS 250
           HVFKGEGF TPTDERHCVNS+SLKF PA S
Sbjct: 145 HVFKGEGFATPTDERHCVNSVSLKFTPAAS 174

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. Involved in cold tolerance. Eliminates MetSO and reactive oxygen species that accumulate at the ER during cold acclimation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9M0Z5|MSRB4_ARATH Peptide methionine sulfoxide reductase B4 OS=Arabidopsis thaliana GN=MSRB4 PE=2 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/130 (75%), Positives = 109/130 (83%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           V K+EEEWRA+LSPEQFRILRQK TE PGT EYDK FEEGI++C  C TPLYKSTTKF++
Sbjct: 8   VKKTEEEWRAVLSPEQFRILRQKGTETPGTEEYDKFFEEGIFSCIGCKTPLYKSTTKFDA 67

Query: 183 GCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSIS 242
           GCGWPAF+EGLPGAIN +PDPDG R EITCA C GHLGHV KGEG+ TPTDER CVNS+S
Sbjct: 68  GCGWPAFFEGLPGAINRAPDPDGRRTEITCAVCDGHLGHVHKGEGYSTPTDERLCVNSVS 127

Query: 243 LKFVPANSGS 252
           + F PA   S
Sbjct: 128 INFNPAKPSS 137

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q84JT6|MSRB9_ARATH Peptide methionine sulfoxide reductase B9 OS=Arabidopsis thaliana GN=MSRB9 PE=2 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 108/131 (82%)

Query: 115 AVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLY 174
           AVA    SV K +++WRAILSPEQFR+LR+K TE  G GEY K F++GIY+C+ C TPLY
Sbjct: 7   AVAPSTGSVQKKDQDWRAILSPEQFRVLREKGTENRGKGEYTKLFDDGIYSCAGCATPLY 66

Query: 175 KSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDE 234
           KSTTKF+SGCGWP+F++ +PGAI  +P+  G R+EITCAAC GHLGHV KGEGFPT TDE
Sbjct: 67  KSTTKFDSGCGWPSFFDAIPGAIKQTPEAGGRRMEITCAACDGHLGHVVKGEGFPTATDE 126

Query: 235 RHCVNSISLKF 245
           RHCVNS+SLKF
Sbjct: 127 RHCVNSVSLKF 137

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|O49707|MSRB8_ARATH Peptide methionine sulfoxide reductase B8 OS=Arabidopsis thaliana GN=MSRB8 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 111/141 (78%), Gaps = 2/141 (1%)

Query: 112 VVLAVASGPAS--VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSAC 169
           + +  A+ P+S    K +EEWRA+LSPEQFR+LR K T+  G GE+ K FEEG Y+C+ C
Sbjct: 1   MAMTAAAVPSSGSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGC 60

Query: 170 GTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFP 229
           GT LYKSTTKF+SGCGWPAF++ +PGAI  +P+  G R+EITCA C GHLGHVFKGEG+ 
Sbjct: 61  GTALYKSTTKFDSGCGWPAFFDAIPGAIKQTPEAGGRRMEITCAVCDGHLGHVFKGEGYS 120

Query: 230 TPTDERHCVNSISLKFVPANS 250
           TPTD+RHCVNS+SLKF  A+S
Sbjct: 121 TPTDQRHCVNSVSLKFASADS 141

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8VY86|MSRB7_ARATH Peptide methionine sulfoxide reductase B7 OS=Arabidopsis thaliana GN=MSRB7 PE=2 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 104/130 (80%)

Query: 121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKF 180
            S  K +EEWRA+LSPEQFR+LR K T+  G GE+ K FEEG Y+C+ CGT LYKSTTKF
Sbjct: 13  GSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGTALYKSTTKF 72

Query: 181 NSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNS 240
           +SGCGWPAF++ +PGAI  +P+  G R+EITCA C GHLGHVFKGEG+ TPTD+RHCVNS
Sbjct: 73  DSGCGWPAFFDAIPGAIKQTPEAGGRRMEITCAVCDGHLGHVFKGEGYSTPTDQRHCVNS 132

Query: 241 ISLKFVPANS 250
           +SLKF  A S
Sbjct: 133 VSLKFSSAGS 142

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8GWF4|MSRB6_ARATH Peptide methionine sulfoxide reductase B6 OS=Arabidopsis thaliana GN=MSRB6 PE=2 SV=1

 Score =  194 bits (493), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 101/126 (80%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           + KS EEWR +LSPEQF+ILR+K+ E  G+GEY K FEEGIY C  CG P+YKSTTKF+S
Sbjct: 24  IKKSNEEWRTVLSPEQFKILREKSIEKRGSGEYVKLFEEGIYCCVGCGNPVYKSTTKFDS 83

Query: 183 GCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSIS 242
           GCGWPAF++ +PGAIN + +  GLR EITC  C GHLGHV K EGFPTPTDERHCVNS++
Sbjct: 84  GCGWPAFFDAIPGAINRTEERAGLRYEITCTKCDGHLGHVLKNEGFPTPTDERHCVNSVA 143

Query: 243 LKFVPA 248
           LKF  A
Sbjct: 144 LKFSSA 149

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
388515879	196	unknown [Lotus japonicus]	0.755	0.979	0.622	8e-71
156105710	201	chloroplast methionine sulfoxide reducta	0.791	1.0	0.626	3e-70
359496244	197	PREDICTED: peptide methionine sulfoxide	0.720	0.928	0.664	3e-70
255554535	212	methionine sulfoxide reductase, putative	0.811	0.971	0.621	1e-69
357476107	189	Methionine-R-sulfoxide reductase B1 prot	0.602	0.809	0.798	3e-69
388513129	189	unknown [Medicago truncatula]	0.602	0.809	0.798	4e-69
363808364	202	uncharacterized protein LOC100799071 [Gl	0.566	0.712	0.821	3e-68
147861848	138	hypothetical protein VITISV_042367 [Viti	0.539	0.992	0.868	5e-68
255644657	202	unknown [Glycine max]	0.562	0.707	0.813	8e-68
356554848	204	PREDICTED: peptide methionine sulfoxide	0.708	0.882	0.695	9e-68

>gi|388515879|gb|AFK46001.1| unknown [Lotus japonicus]

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 137/220 (62%), Positives = 162/220 (73%), Gaps = 28/220 (12%)

Query: 31  FNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCI 90
            N+++T+P+  S++   S+ SNL   HS +   +F        PS   + P ++      
Sbjct: 5   LNIVRTTPLCVSTK---SIFSNLLLSHSTSHFTVF--------PSNPIITPSSI------ 47

Query: 91  SSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYP 150
                  S+R +Q KR FRGGVV+A+A+      KSE+EWRA+LSPEQFRILRQK TEYP
Sbjct: 48  -------SIRHQQRKRGFRGGVVVAMAA----PQKSEDEWRAVLSPEQFRILRQKGTEYP 96

Query: 151 GTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEI 210
           GTGEYDK F EG+Y C+ C TPLY+STTKFNSGCGWPAFYEGLPGAI  +PDPDG RIEI
Sbjct: 97  GTGEYDKFFAEGVYRCAGCETPLYRSTTKFNSGCGWPAFYEGLPGAIYRNPDPDGRRIEI 156

Query: 211 TCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANS 250
           TCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN+
Sbjct: 157 TCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANT 196

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156105710|gb|ABU49226.1| chloroplast methionine sulfoxide reductase B2 precursor [Nicotiana tabacum]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 139/222 (62%), Positives = 156/222 (70%), Gaps = 21/222 (9%)

Query: 29  MGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTG 88
           MG  +LK SP + SS     + +   F+     T +  ++    + SL            
Sbjct: 1   MGSQILKISPFASSS-----IFNATPFLRFQAKTVVTISKTQFRSNSL------------ 43

Query: 89  CISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATE 148
            +SSSGF   +    NKR   GGVV   ++   SV KSEEEWRAILSPEQFRILRQK TE
Sbjct: 44  -VSSSGF---VPLSNNKRGLSGGVVAMASATGGSVQKSEEEWRAILSPEQFRILRQKGTE 99

Query: 149 YPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRI 208
           YPGTGEYDK + EGIY C+ CGTPLYKSTTKFNSGCGWPAF+EGLPGAIN + DPDG RI
Sbjct: 100 YPGTGEYDKFYGEGIYQCAGCGTPLYKSTTKFNSGCGWPAFFEGLPGAINRTADPDGRRI 159

Query: 209 EITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANS 250
           EITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKF PANS
Sbjct: 160 EITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFAPANS 201

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496244|ref|XP_002265129.2| PREDICTED: peptide methionine sulfoxide reductase B3, chloroplastic-like [Vitis vinifera]

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 153/197 (77%), Gaps = 14/197 (7%)

Query: 72  LAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ-----NKRSFRGGVVLAV---------A 117
           +  ++LKL P + + T     + F + L   Q      K ++ GG+ L++          
Sbjct: 1   MGSNVLKLSPFSFSKTLVFPKTMFSKLLPSPQFTSFSPKTNYAGGLRLSLPRSKRNFVAM 60

Query: 118 SGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKST 177
           +GP SV KS+EEWRA+LSPEQFRILR+K TEYPGTGEYDK FEEG+YNC+ CGTPLYKST
Sbjct: 61  AGPGSVQKSDEEWRAVLSPEQFRILRRKGTEYPGTGEYDKFFEEGVYNCAGCGTPLYKST 120

Query: 178 TKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHC 237
           TKFNSGCGWPAFYEGLPGAIN +PDPDG+RIEITCAACGGHLGHVFKGEGFPTPT+ERHC
Sbjct: 121 TKFNSGCGWPAFYEGLPGAINRTPDPDGMRIEITCAACGGHLGHVFKGEGFPTPTNERHC 180

Query: 238 VNSISLKFVPANSGSSM 254
           VNSISLKF PANS SS+
Sbjct: 181 VNSISLKFTPANSSSSL 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554535|ref|XP_002518306.1| methionine sulfoxide reductase, putative [Ricinus communis] gi|223542526|gb|EEF44066.1| methionine sulfoxide reductase, putative [Ricinus communis]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 136/219 (62%), Positives = 160/219 (73%), Gaps = 13/219 (5%)

Query: 32  NVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCIS 91
           N+LKTSP S +    ++          PT +RL +   +S   +  ++ P  +  T  +S
Sbjct: 7   NILKTSPFSSTKTILATA--------KPTFSRLLSPLPDSFNKTRFRVSPPKLI-TNSVS 57

Query: 92  SSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPG 151
            S F  S+ ++   R+ R   +   A  P S+ K EEEWRAILSPEQFRILRQK TEYPG
Sbjct: 58  VSVFTGSVSWKS--RTCRARFIAMAA--PGSLQKPEEEWRAILSPEQFRILRQKGTEYPG 113

Query: 152 TGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEIT 211
           TGEYDK +EEG+YNC+ CGTPLY+STTKFNSGCGWPAFYEGLPGAIN +PDPDG RIEIT
Sbjct: 114 TGEYDKFYEEGVYNCAGCGTPLYRSTTKFNSGCGWPAFYEGLPGAINRTPDPDGRRIEIT 173

Query: 212 CAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANS 250
           CAACGGHLGHVFKGEGFPTPT+ERHCVNSISLKF PANS
Sbjct: 174 CAACGGHLGHVFKGEGFPTPTNERHCVNSISLKFFPANS 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476107|ref|XP_003608339.1| Methionine-R-sulfoxide reductase B1 protein [Medicago truncatula] gi|355509394|gb|AES90536.1| Methionine-R-sulfoxide reductase B1 protein [Medicago truncatula]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/154 (79%), Positives = 135/154 (87%), Gaps = 1/154 (0%)

Query: 98  SLRFEQNKRSFRGGVV-LAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYD 156
           ++   Q KR FRGG+V ++ A  P SV KSEEEW+AILSPEQFRILRQK TEYPGTGEYD
Sbjct: 36  TISIRQPKRGFRGGIVAMSAAPTPGSVQKSEEEWQAILSPEQFRILRQKGTEYPGTGEYD 95

Query: 157 KHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACG 216
           K F EG+Y+C+ CGTPLYKSTTKFNSGCGWPAFYEG+PGAIN   DPDG+RIEITCAACG
Sbjct: 96  KFFGEGVYSCAGCGTPLYKSTTKFNSGCGWPAFYEGVPGAINRHADPDGMRIEITCAACG 155

Query: 217 GHLGHVFKGEGFPTPTDERHCVNSISLKFVPANS 250
           GHLGHVFKGEGFPTPT+ERHCVNSISLKF PANS
Sbjct: 156 GHLGHVFKGEGFPTPTNERHCVNSISLKFAPANS 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513129|gb|AFK44626.1| unknown [Medicago truncatula]

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/154 (79%), Positives = 134/154 (87%), Gaps = 1/154 (0%)

Query: 98  SLRFEQNKRSFRGGVV-LAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYD 156
           ++   Q KR FRGG+V ++ A  P SV KSEEEW+AILSPEQFRILRQK TEYPGTGEYD
Sbjct: 36  TISIRQPKRGFRGGIVAMSAAPTPGSVQKSEEEWQAILSPEQFRILRQKGTEYPGTGEYD 95

Query: 157 KHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACG 216
           K F EG+Y C+ CGTPLYKSTTKFNSGCGWPAFYEG+PGAIN   DPDG+RIEITCAACG
Sbjct: 96  KFFGEGVYGCAGCGTPLYKSTTKFNSGCGWPAFYEGVPGAINRHADPDGMRIEITCAACG 155

Query: 217 GHLGHVFKGEGFPTPTDERHCVNSISLKFVPANS 250
           GHLGHVFKGEGFPTPT+ERHCVNSISLKF PANS
Sbjct: 156 GHLGHVFKGEGFPTPTNERHCVNSISLKFAPANS 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808364|ref|NP_001242255.1| uncharacterized protein LOC100799071 [Glycine max] gi|255628539|gb|ACU14614.1| unknown [Glycine max]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 132/146 (90%), Gaps = 2/146 (1%)

Query: 105 KRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIY 164
           KR FRGG+V   A+G  S+ KSEEEWRA+LSPEQFRILRQK TE+PGTGEYDK F+EG+Y
Sbjct: 59  KRGFRGGIVAMAAAG--SLRKSEEEWRAVLSPEQFRILRQKGTEFPGTGEYDKFFDEGVY 116

Query: 165 NCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFK 224
           NC+ CGTPLY+S TKFNSGCGWPAFYEG+PGAIN +PDPDG+R EITCAACGGHLGHVFK
Sbjct: 117 NCAGCGTPLYRSLTKFNSGCGWPAFYEGIPGAINRNPDPDGMRTEITCAACGGHLGHVFK 176

Query: 225 GEGFPTPTDERHCVNSISLKFVPANS 250
           GEGFPTPT ERHCVNSISLKFVPANS
Sbjct: 177 GEGFPTPTYERHCVNSISLKFVPANS 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147861848|emb|CAN83184.1| hypothetical protein VITISV_042367 [Vitis vinifera]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 129/137 (94%)

Query: 118 SGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKST 177
           +GP SV KS+EEWRA+LSPEQFRILR+K TEYPGTGEYDK FEEG+YNC+ CGTPLYKST
Sbjct: 2   AGPGSVQKSDEEWRAVLSPEQFRILRRKGTEYPGTGEYDKFFEEGVYNCAGCGTPLYKST 61

Query: 178 TKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHC 237
           TKFNSGCGWPAFYEGLPGAIN +PDPDG+RIEITCAACGGHLGHVFKGEGFPTPT+ERHC
Sbjct: 62  TKFNSGCGWPAFYEGLPGAINRTPDPDGMRIEITCAACGGHLGHVFKGEGFPTPTNERHC 121

Query: 238 VNSISLKFVPANSGSSM 254
           VNSISLKF PANS SS+
Sbjct: 122 VNSISLKFTPANSSSSL 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644657|gb|ACU22831.1| unknown [Glycine max]

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 118/145 (81%), Positives = 131/145 (90%), Gaps = 2/145 (1%)

Query: 105 KRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIY 164
           KR FRGG+V   A+G  S+ KSEEEWRA+LSPEQFRILRQK TE+PGTGEYDK F+EG+Y
Sbjct: 59  KRGFRGGIVAMAAAG--SLRKSEEEWRAVLSPEQFRILRQKGTEFPGTGEYDKFFDEGVY 116

Query: 165 NCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFK 224
           NC+ CGTPLY+S TKFNSGCGWPAFYEG+PGAIN +PDPDG+R EITCAACGGHLGHVFK
Sbjct: 117 NCAGCGTPLYRSLTKFNSGCGWPAFYEGIPGAINRNPDPDGMRTEITCAACGGHLGHVFK 176

Query: 225 GEGFPTPTDERHCVNSISLKFVPAN 249
           GEGFPTPT+ERHCVNSISLKF PAN
Sbjct: 177 GEGFPTPTNERHCVNSISLKFAPAN 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554848|ref|XP_003545754.1| PREDICTED: peptide methionine sulfoxide reductase B2, chloroplastic-like isoform 1 [Glycine max]

 Score =  262 bits (670), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 149/187 (79%), Gaps = 7/187 (3%)

Query: 64  LFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASV 123
           +F+  L S +PS +   P +VT T    S+  + +L     K  FRGG+V   A  P S+
Sbjct: 23  IFSTLLRS-SPSTI-FPPKSVTPTTLFVSATPFFTL---HPKLGFRGGIVAMAA--PGSL 75

Query: 124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSG 183
            KSEEEWRAILSPEQFRILRQK TE+PGTGEYDK +EEG+YNC+ CGTPLY+S TKFNSG
Sbjct: 76  RKSEEEWRAILSPEQFRILRQKGTEFPGTGEYDKFYEEGVYNCAGCGTPLYRSITKFNSG 135

Query: 184 CGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISL 243
           CGWPAFYEG+PGAIN +PDPDG+R EITCAACGGHLGHVFKGEGFPTPT+ERHCVNSISL
Sbjct: 136 CGWPAFYEGIPGAINRNPDPDGMRTEITCAACGGHLGHVFKGEGFPTPTNERHCVNSISL 195

Query: 244 KFVPANS 250
           KF PANS
Sbjct: 196 KFAPANS 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2141702	202	MSRB2 "methionine sulfoxide re	0.594	0.747	0.782	6.7e-65
TAIR|locus:2138922	139	MSRB5 "methionine sulfoxide re	0.539	0.985	0.766	1.1e-57
TAIR|locus:2138892	176	MSRB3 "methionine sulfoxide re	0.586	0.846	0.706	1.2e-56
TAIR|locus:2138902	139	MSRB4 "methionine sulfoxide re	0.511	0.935	0.753	3e-53
TAIR|locus:2141692	143	MSRB9 "methionine sulfoxide re	0.535	0.951	0.669	5.8e-50
TAIR|locus:2141667	144	MSRB7 "methionine sulfoxide re	0.543	0.958	0.640	8.5e-49
TAIR|locus:2141677	143	MSRB8 "methionine sulfoxide re	0.531	0.944	0.661	8.5e-49
TAIR|locus:2138937	153	MSRB6 "methionine sulfoxide re	0.496	0.823	0.682	5.4e-47
DICTYBASE|DDB_G0291145	190	msrB "peptide-methionine (R)-S	0.492	0.657	0.617	4.5e-43
CGD|CAL0003438	147	orf19.3292 [Candida albicans (	0.515	0.891	0.592	4.2e-40

TAIR|locus:2141702 MSRB2 "methionine sulfoxide reductase B 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 119/152 (78%), Positives = 132/152 (86%)

Query:    99 LRFEQNKRSFRGGVVLAV-ASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDK 157
             L F   +R F GG ++A+ +S P SVNK EEEWRAILSPEQFRILRQK TEYPGTGEY+K
Sbjct:    48 LSFPSLRRGFHGGRIVAMGSSAPESVNKPEEEWRAILSPEQFRILRQKGTEYPGTGEYNK 107

Query:   158 HFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGG 217
              F++GIY C+ CGTPLYKSTTKF+SGCGWPAF++GLPGAI  +PDPDG RIEITCAACGG
Sbjct:   108 VFDDGIYCCAGCGTPLYKSTTKFDSGCGWPAFFDGLPGAITRTPDPDGRRIEITCAACGG 167

Query:   218 HLGHVFKGEGFPTPTDERHCVNSISLKFVPAN 249
             HLGHVFKGEGFPTPTDERHCVNSISLKF P N
Sbjct:   168 HLGHVFKGEGFPTPTDERHCVNSISLKFTPEN 199

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2138922 MSRB5 "methionine sulfoxide reductase B5" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 105/137 (76%), Positives = 117/137 (85%)

Query:   116 VASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYK 175
             +A+ P  V K+EEEWRA+LSPEQFRILRQK TE PGTGEYDK FEEGI++C  C TPLYK
Sbjct:     1 MAASPLVVQKTEEEWRAVLSPEQFRILRQKGTEKPGTGEYDKFFEEGIFDCVGCKTPLYK 60

Query:   176 STTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDER 235
             STTKF+SGCGWPAF+EGLPGAIN +PDPDG R EITCAAC GHLGHVFKGEG+  PTDER
Sbjct:    61 STTKFDSGCGWPAFFEGLPGAINRTPDPDGRRTEITCAACDGHLGHVFKGEGYGNPTDER 120

Query:   236 HCVNSISLKFVPANSGS 252
             HCVNS+S+ F PA S S
Sbjct:   121 HCVNSVSISFNPAKSSS 137

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2138892 MSRB3 "methionine sulfoxide reductase B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 106/150 (70%), Positives = 116/150 (77%)

Query:   102 EQNKRSFRGGVVLAVA-SGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFE 160
             E +      GV   VA + P SV K +EEWRAILSPEQFRILRQK TEYPGTGEY    +
Sbjct:    25 ESDSICLSSGVASTVAMAAPGSVQKGDEEWRAILSPEQFRILRQKGTEYPGTGEYVNFDK 84

Query:   161 EGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLG 220
             EG+Y C  C  PLYKSTTKFN+GCGWPAF+EG+PGAI  + DPDG RIEI CA CGGHLG
Sbjct:    85 EGVYGCVGCNAPLYKSTTKFNAGCGWPAFFEGIPGAITRTTDPDGRRIEINCATCGGHLG 144

Query:   221 HVFKGEGFPTPTDERHCVNSISLKFVPANS 250
             HVFKGEGF TPTDERHCVNS+SLKF PA S
Sbjct:   145 HVFKGEGFATPTDERHCVNSVSLKFTPAAS 174

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0070191 "methionine-R-sulfoxide reductase activity" evidence=IMP

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2138902 MSRB4 "methionine sulfoxide reductase B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 98/130 (75%), Positives = 109/130 (83%)

Query:   123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
             V K+EEEWRA+LSPEQFRILRQK TE PGT EYDK FEEGI++C  C TPLYKSTTKF++
Sbjct:     8 VKKTEEEWRAVLSPEQFRILRQKGTETPGTEEYDKFFEEGIFSCIGCKTPLYKSTTKFDA 67

Query:   183 GCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSIS 242
             GCGWPAF+EGLPGAIN +PDPDG R EITCA C GHLGHV KGEG+ TPTDER CVNS+S
Sbjct:    68 GCGWPAFFEGLPGAINRAPDPDGRRTEITCAVCDGHLGHVHKGEGYSTPTDERLCVNSVS 127

Query:   243 LKFVPANSGS 252
             + F PA   S
Sbjct:   128 INFNPAKPSS 137

GO:0005737 "cytoplasm" evidence=ISM

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2141692 MSRB9 "methionine sulfoxide reductase B9" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 91/136 (66%), Positives = 110/136 (80%)

Query:   115 AVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLY 174
             AVA    SV K +++WRAILSPEQFR+LR+K TE  G GEY K F++GIY+C+ C TPLY
Sbjct:     7 AVAPSTGSVQKKDQDWRAILSPEQFRVLREKGTENRGKGEYTKLFDDGIYSCAGCATPLY 66

Query:   175 KSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDE 234
             KSTTKF+SGCGWP+F++ +PGAI  +P+  G R+EITCAAC GHLGHV KGEGFPT TDE
Sbjct:    67 KSTTKFDSGCGWPSFFDAIPGAIKQTPEAGGRRMEITCAACDGHLGHVVKGEGFPTATDE 126

Query:   235 RHCVNSISLKFVPANS 250
             RHCVNS+SLKF   +S
Sbjct:   127 RHCVNSVSLKFSEISS 142

GO:0005737 "cytoplasm" evidence=ISM

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2141667 MSRB7 "methionine sulfoxide reductase B7" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 91/142 (64%), Positives = 113/142 (79%)

Query:   114 LAVASGPA--SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGT 171
             +  A+ PA  S  K +EEWRA+LSPEQFR+LR K T+  G GE+ K FEEG Y+C+ CGT
Sbjct:     4 MTAAAVPATGSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGT 63

Query:   172 PLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTP 231
              LYKSTTKF+SGCGWPAF++ +PGAI  +P+  G R+EITCA C GHLGHVFKGEG+ TP
Sbjct:    64 ALYKSTTKFDSGCGWPAFFDAIPGAIKQTPEAGGRRMEITCAVCDGHLGHVFKGEGYSTP 123

Query:   232 TDERHCVNSISLKFVPANSGSS 253
             TD+RHCVNS+SLKF  +++GSS
Sbjct:   124 TDQRHCVNSVSLKF--SSAGSS 143

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0000304 "response to singlet oxygen" evidence=IEP

TAIR|locus:2141677 MSRB8 "methionine sulfoxide reductase B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 90/136 (66%), Positives = 108/136 (79%)

Query:   115 AVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLY 174
             AV S   S  K +EEWRA+LSPEQFR+LR K T+  G GE+ K FEEG Y+C+ CGT LY
Sbjct:     7 AVPSS-GSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGTALY 65

Query:   175 KSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDE 234
             KSTTKF+SGCGWPAF++ +PGAI  +P+  G R+EITCA C GHLGHVFKGEG+ TPTD+
Sbjct:    66 KSTTKFDSGCGWPAFFDAIPGAIKQTPEAGGRRMEITCAVCDGHLGHVFKGEGYSTPTDQ 125

Query:   235 RHCVNSISLKFVPANS 250
             RHCVNS+SLKF  A+S
Sbjct:   126 RHCVNSVSLKFASADS 141

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2138937 MSRB6 "methionine sulfoxide reductase B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 86/126 (68%), Positives = 101/126 (80%)

Query:   123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
             + KS EEWR +LSPEQF+ILR+K+ E  G+GEY K FEEGIY C  CG P+YKSTTKF+S
Sbjct:    24 IKKSNEEWRTVLSPEQFKILREKSIEKRGSGEYVKLFEEGIYCCVGCGNPVYKSTTKFDS 83

Query:   183 GCGWPAFYEGLPGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSIS 242
             GCGWPAF++ +PGAIN + +  GLR EITC  C GHLGHV K EGFPTPTDERHCVNS++
Sbjct:    84 GCGWPAFFDAIPGAINRTEERAGLRYEITCTKCDGHLGHVLKNEGFPTPTDERHCVNSVA 143

Query:   243 LKFVPA 248
             LKF  A
Sbjct:   144 LKFSSA 149

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

DICTYBASE|DDB_G0291145 msrB "peptide-methionine (R)-S-oxide reductase" [Dictyostelium discoideum (taxid:44689)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 79/128 (61%), Positives = 101/128 (78%)

Query:   123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
             +N SE+EWR  L+P QF++LR+K TE P +GEY+K++E+G+YNC+AC TPL+KS  KF+S
Sbjct:    61 MNLSEDEWRVKLTPAQFKVLREKGTERPDSGEYNKNYEKGVYNCAACDTPLFKSEHKFSS 120

Query:   183 GCGWPAFYEGLPGAINCSPDPD--GL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVN 239
             GCGWP+FY+ +PGA+    DP   G  R EI CA CG H+GHVFKGE F TP D+RHCVN
Sbjct:   121 GCGWPSFYDSIPGALVLHEDPSLPGRPRTEICCAKCGSHMGHVFKGEKFNTPIDQRHCVN 180

Query:   240 SISLKFVP 247
             SISLKF+P
Sbjct:   181 SISLKFLP 188

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

CGD|CAL0003438 orf19.3292 [Candida albicans (taxid:5476)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 80/135 (59%), Positives = 97/135 (71%)

Query:   122 SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKH--FEEGIYNCSACGTPLYKSTTK 179
             +++KS+ EWRAILSPEQFR+LRQ  TE P TGEY      + G Y C+ C  PLYK+ TK
Sbjct:    13 NMSKSDSEWRAILSPEQFRVLRQGGTEAPYTGEYTNTPASDVGYYECAGCKYPLYKANTK 72

Query:   180 FNSGCGWPAFYEGLPGAINCSPDPD-GL-RIEITCAACGGHLGHVFKGEGFPTPTDERHC 237
             F + CGWPAFYE LPGA+    D   G+ R E+ C+ C GHLGHVFKGEG+ TPTDERHC
Sbjct:    73 FKAHCGWPAFYEALPGAVKIYRDESHGMIREEMRCSNCDGHLGHVFKGEGYKTPTDERHC 132

Query:   238 VNSISLKFVPANSGS 252
             VNS+S+KF P +  S
Sbjct:   133 VNSVSIKFNPQDQQS 147

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AUK5	MSRB3_ORYSJ	1, ., 8, ., 4, ., 1, 2	0.8257	0.5196	0.5764	yes	no
Q9C5C8	MSRB2_ARATH	1, ., 8, ., 4, ., 1, 2	0.8013	0.5708	0.7178	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.4	LOW CONFIDENCE prediction!
4th Layer	1.8.4.12	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00005758001	SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_157, whole genome shotgun sequence); (138 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015923001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (190 aa)	•	•	•		•		•		0.963
	GSVIVG00014205001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (206 aa)	•	•	•		•		•		0.935
	GSVIVG00036803001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (252 aa)	•	•	•				•		0.592

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
pfam01641	124	pfam01641, SelR, SelR domain	2e-70
PRK05550	283	PRK05550, PRK05550, bifunctional methionine sulfox	1e-62
COG0229	140	COG0229, COG0229, Conserved domain frequently asso	2e-61
PRK00222	142	PRK00222, PRK00222, methionine sulfoxide reductase	6e-60
PRK05508	119	PRK05508, PRK05508, methionine sulfoxide reductase	9e-60
TIGR00357	134	TIGR00357, TIGR00357, methionine-R-sulfoxide reduc	9e-47
PRK14018	521	PRK14018, PRK14018, trifunctional thioredoxin/meth	7e-22

>gnl|CDD|201899 pfam01641, SelR, SelR domain

 Score =  211 bits (540), Expect = 2e-70
 Identities = 76/125 (60%), Positives = 92/125 (73%), Gaps = 4/125 (3%)

Query: 127 EEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGW 186
           +EEW+A+LSPEQ+R+LR K TE P TGEYD HFEEGIY C  CG PL+ STTKF+SGCGW
Sbjct: 1   DEEWKAVLSPEQYRVLRNKGTEKPFTGEYDDHFEEGIYVCIGCGEPLFSSTTKFDSGCGW 60

Query: 187 PAFYEGLPG-AINCSPDPD--GLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISL 243
           P+F+E + G AI  +PD      R E+ CA C GHLGHVFK +G   P   R+C+NS SL
Sbjct: 61  PSFFEPISGDAIKYTPDRSHGMRRTEVRCANCDGHLGHVFK-DGPKEPGGLRYCINSASL 119

Query: 244 KFVPA 248
           KF+PA
Sbjct: 120 KFIPA 124

Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity. Length = 124

>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional

 Score =  197 bits (504), Expect = 1e-62
 Identities = 68/120 (56%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 134 LSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL 193
           L+P ++R++  K TE P +GEY  H E+G+Y C  CG PL++S  KFNSGCGWP+F + +
Sbjct: 7   LTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFDDEI 66

Query: 194 PGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANSGSS 253
           PGA+   PD DG R EI CA CG HLGHVF+GEG  TP + RHCVNS SL FVPA  G+ 
Sbjct: 67  PGAVKRLPDADGRRTEIVCANCGAHLGHVFEGEGL-TPKNTRHCVNSASLDFVPAEEGAY 125

Length = 283

>gnl|CDD|223307 COG0229, COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

 Score =  189 bits (482), Expect = 2e-61
 Identities = 59/130 (45%), Positives = 79/130 (60%), Gaps = 4/130 (3%)

Query: 122 SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFN 181
            +  S+EE +  L+PEQ+R+ +   TE P TGEY  + E+GIY C  CG PL+ S  KF+
Sbjct: 1   YIKPSDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFD 60

Query: 182 SGCGWPAFYEGL-PGAINCSPDP--DGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCV 238
           SGCGWP+F + + P AI    D     +R E+ CA C  HLGHVF     PT    R+C+
Sbjct: 61  SGCGWPSFTKPISPDAITYKEDRSHGMVRTEVRCANCDSHLGHVFPDGPPPTG-GLRYCI 119

Query: 239 NSISLKFVPA 248
           NS SL+F+P 
Sbjct: 120 NSASLRFIPK 129

Length = 140

>gnl|CDD|234692 PRK00222, PRK00222, methionine sulfoxide reductase B; Provisional

 Score =  185 bits (473), Expect = 6e-60
 Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 5/128 (3%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           + KS+EEW+  L+PEQ+R+ ++  TE P TGEY  + E+GIY C  CG PL+ S TKF+S
Sbjct: 3   IEKSKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDS 62

Query: 183 GCGWPAFYEGL-PGAINCSPDPD-GL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVN 239
           GCGWP+F + +   AI    D   G+ R E+ CA C  HLGHVF  +G P PT  R+C+N
Sbjct: 63  GCGWPSFTKPIDEEAIRELRDTSHGMVRTEVRCANCDSHLGHVFP-DG-PKPTGLRYCIN 120

Query: 240 SISLKFVP 247
           S SLKF+P
Sbjct: 121 SASLKFIP 128

Length = 142

>gnl|CDD|180121 PRK05508, PRK05508, methionine sulfoxide reductase B; Provisional

 Score =  184 bits (469), Expect = 9e-60
 Identities = 69/116 (59%), Positives = 84/116 (72%), Gaps = 1/116 (0%)

Query: 134 LSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL 193
           L+PE+  ++ +K TE P +GEY+  FE+G Y C  CG PLY+S  KF SGCGWP+F + +
Sbjct: 4   LTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFDDEI 63

Query: 194 PGAINCSPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN 249
            GA+   PD DG R EI CA CGGHLGHVF+GEGF TP + RHCVNSISLKFVP  
Sbjct: 64  KGAVKRIPDADGRRTEIVCANCGGHLGHVFEGEGF-TPKNTRHCVNSISLKFVPDK 118

Length = 119

>gnl|CDD|129454 TIGR00357, TIGR00357, methionine-R-sulfoxide reductase

 Score =  151 bits (384), Expect = 9e-47
 Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 5/132 (3%)

Query: 125 KSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGC 184
            S+EE +  L+P Q+ + +   TE P T EY  + EEGIY    CG PL+ S  KF+SGC
Sbjct: 2   PSDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSGC 61

Query: 185 GWPAFYEGLP-GAINCSPDPD--GLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSI 241
           GWP+FY+ +    +    D     +R E+ C  C  HLGHVF  +G P PT  R+C+NS 
Sbjct: 62  GWPSFYKPISEEVVAYERDESHGMIRTEVRCRNCDAHLGHVFD-DG-PEPTGLRYCINSA 119

Query: 242 SLKFVPANSGSS 253
           +LKF+P      
Sbjct: 120 ALKFIPLEEMEE 131

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]. Length = 134

>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

 Score = 93.8 bits (233), Expect = 7e-22
 Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 4/125 (3%)

Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+ E +  L+ EQ++I +  ATE   + EYD  F+ GIY     G PL+ S  K++SGCG
Sbjct: 381 SDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 440

Query: 186 WPAFYEGL-PGAINCSPDP--DGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSIS 242
           WP+F   +    +    D   +  R E+   A   HLGHVF  +G       R+C+N  S
Sbjct: 441 WPSFTRPIDAKVVTEHDDFSYNMRRTEVRSRAADSHLGHVFP-DGPRDKGGLRYCINGAS 499

Query: 243 LKFVP 247
           LKF+P
Sbjct: 500 LKFIP 504

Length = 521

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	100.0
COG0229	140	Conserved domain frequently associated with peptid	100.0
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	100.0
PRK00222	142	methionine sulfoxide reductase B; Provisional	100.0
PRK05508	119	methionine sulfoxide reductase B; Provisional	100.0
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	100.0
KOG0856	146	consensus Predicted pilin-like transcription facto	100.0
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	100.0
COG0225	174	MsrA Peptide methionine sulfoxide reductase [Postt	99.68
PRK14054	172	methionine sulfoxide reductase A; Provisional	99.57
PRK13014	186	methionine sulfoxide reductase A; Provisional	99.54
TIGR00401	149	msrA methionine-S-sulfoxide reductase. This model	99.5
PF01625	155	PMSR: Peptide methionine sulfoxide reductase; Inte	99.48
PRK05528	156	methionine sulfoxide reductase A; Provisional	99.45
PRK00058	213	methionine sulfoxide reductase A; Provisional	99.38
KOG1635	191	consensus Peptide methionine sulfoxide reductase [	99.33
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	99.31
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	90.85

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=100.00  E-value=9.4e-73  Score=553.08  Aligned_cols=197  Identities=29%  Similarity=0.466  Sum_probs=177.5

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeeccCC-C--
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASG-P--  120 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaAaPk-~--  120 (254)
                      -.||+++|||+|++|+++|+++++.+++  .+.++| +|+  |.|+++||+||+|||   .|||.++..+....-. .  
T Consensus       286 G~qYrs~I~~~~~eq~~~a~~~~~~~~~--~~~~~i-~te--i~~~~~Fy~AE~yHQ~Yl~k~p~~yc~~~~~~~~~~~~  360 (521)
T PRK14018        286 GTQYRSGVYYTDPADKAVIAAALKREQQ--KYQLPL-VVE--NEPLKNFYDAEEYHQDYLIKNPNGYCHIDLRKADEPLP  360 (521)
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHHHHHH--HcCCCe-EEE--EecCCCeeecHHHHHHHHHhCCCceeEeeccccccccc
Confidence            4799999999999999999999999886  478899 999  999999999999999   8999988776554211 0  


Q ss_pred             ---------------CCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCC
Q 025343          121 ---------------ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG  185 (254)
Q Consensus       121 ---------------~~~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~G  185 (254)
                                     ....++++|||+.|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~y~v~~~~gtE~~f~~~~~~~~~~G~y~c~~c~~pLf~s~~Kf~sg~G  440 (521)
T PRK14018        361 GKTKTAPQGKGFDAATYKKPSDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG  440 (521)
T ss_pred             ccccccccccccchhhccCCChHHHhccCCHHHHHHHHhcCCCCCCCCCCcCCCCCEEEEecCCCCccccCcccccCCCC
Confidence                           12356999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccC-CCeeeecCC-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343          186 WPAFYEGLP-GAINCSPDP-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       186 WPSF~~~i~-~~v~~~~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~  249 (254)
                      ||||++||+ ++|....|. +|| ||||+|++||+||||||+| |+++|||+||||||+||+|+|.+
T Consensus       441 WPsF~~~i~~~~v~~~~d~s~g~~R~Ev~c~~c~~HLGHvf~d-gp~~~~g~RyCiNs~~l~f~~~~  506 (521)
T PRK14018        441 WPSFTRPIDAKVVTEHDDFSYNMRRTEVRSRAADSHLGHVFPD-GPRDKGGLRYCINGASLKFIPLE  506 (521)
T ss_pred             CcccCcccCcCceEEeeccCCCceEEEEEECCCCCcCCcccCC-CCCCCCCCEeeeceeEEEeecch
Confidence            999999995 678888886 677 9999999999999999986 43357999999999999999985

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-67  Score=435.75  Aligned_cols=126  Identities=48%  Similarity=0.962  Sum_probs=119.2

Q ss_pred             CCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc-CCCeeeec
Q 025343          123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCSP  201 (254)
Q Consensus       123 ~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i-~~~v~~~~  201 (254)
                      +.++|++||+.|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|..++
T Consensus         2 ~~~sd~e~~~~Lt~~qy~Vtq~~gTE~pft~~y~~~~~~GiY~c~~cg~pLF~S~~KfdSgcGWPSF~~pi~~~~I~~~~   81 (140)
T COG0229           2 IKPSDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFDSGCGWPSFTKPISPDAITYKE   81 (140)
T ss_pred             CccchHHHHHhcCHHHHHHHHhcCCCCCCCChhhcccCCceEEeecCCCccccccccccCCCCCccccccCCcccceEee
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999 66999998


Q ss_pred             CC-CCC-eeEEEccccCCCcccccCCCCCCCCCC-ceeeecccceeeeeCCC
Q 025343          202 DP-DGL-RIEITCAACGGHLGHVFKGEGFPTPTD-ERHCVNSISLKFVPANS  250 (254)
Q Consensus       202 d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg-~RyCINs~aL~F~p~~~  250 (254)
                      |. +|| ||||+|++||+||||||+|  ||.||| +|||||||||+|+|.+.
T Consensus        82 D~S~gM~RtEVrc~~c~sHLGHVF~D--GP~~tgglRYCINSasL~Fip~~~  131 (140)
T COG0229          82 DRSHGMVRTEVRCANCDSHLGHVFPD--GPPPTGGLRYCINSASLRFIPKEE  131 (140)
T ss_pred             ccCCCcEEEEEEecCCCCccccccCC--CCCCCCCeeEeecchheeecchhh
Confidence            86 688 9999999999999999997  588887 99999999999999853

>TIGR00357 methionine-R-sulfoxide reductase

Probab=100.00  E-value=1.4e-65  Score=426.67  Aligned_cols=123  Identities=45%  Similarity=0.869  Sum_probs=118.1

Q ss_pred             CCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc-CCCeeeecCC
Q 025343          125 KSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCSPDP  203 (254)
Q Consensus       125 ~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i-~~~v~~~~d~  203 (254)
                      ++++|||+.|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++| +++|.++.|.
T Consensus         2 ~~~~ewr~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~V~~~~D~   81 (134)
T TIGR00357         2 PSDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSGCGWPSFYKPISEEVVAYERDE   81 (134)
T ss_pred             CCHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCCCCeEEEccCCCCccccccchhcCCCCCcCcCcccCCCceEEeecC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999 7899999886


Q ss_pred             -CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343          204 -DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       204 -~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~  249 (254)
                       .|| ||||+|++||+||||||+|  ||+|||+||||||+||+|+|.+
T Consensus        82 s~gm~RtEv~C~~Cg~HLGHVF~D--GP~ptg~RyCINs~sL~F~p~~  127 (134)
T TIGR00357        82 SHGMIRTEVRCRNCDAHLGHVFDD--GPEPTGLRYCINSAALKFIPLE  127 (134)
T ss_pred             CCCcEEEEEEecCCCCccCcccCC--CCCCCCceEeecceeEecccch
Confidence             587 9999999999999999986  4899999999999999999975

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=3.2e-65  Score=427.94  Aligned_cols=126  Identities=51%  Similarity=0.986  Sum_probs=120.1

Q ss_pred             CCCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc-CCCeeee
Q 025343          122 SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS  200 (254)
Q Consensus       122 ~~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i-~~~v~~~  200 (254)
                      ++.++++|||+.|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++| +++|+.+
T Consensus         2 ~~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~~~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~V~~~   81 (142)
T PRK00222          2 KIEKSKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDSGCGWPSFTKPIDEEAIREL   81 (142)
T ss_pred             CccCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCchhcCCcccccCCCCCcCcCcccCCCceEEe
Confidence            456899999999999999999999999999999999999999999999999999999999999999999999 5799999


Q ss_pred             cCC-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343          201 PDP-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       201 ~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~  249 (254)
                      .|. +|| ||||+|++||+||||||+|  ||+|||+||||||+||+|+|++
T Consensus        82 ~D~s~gm~RtEv~C~~Cg~HLGHVF~D--GP~ptg~RyCINs~sL~F~p~~  130 (142)
T PRK00222         82 RDTSHGMVRTEVRCANCDSHLGHVFPD--GPKPTGLRYCINSASLKFIPKD  130 (142)
T ss_pred             eccCCCceEEEEEeCCCCCccCcccCC--CCCCCCCEeeeceeeEEeeccc
Confidence            886 687 9999999999999999986  4899999999999999999985

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=6.3e-65  Score=415.10  Aligned_cols=117  Identities=57%  Similarity=1.098  Sum_probs=112.5

Q ss_pred             hcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccCCCeeeecCCCCCeeEEE
Q 025343          132 AILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEIT  211 (254)
Q Consensus       132 ~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~~~v~~~~d~~g~RtEv~  211 (254)
                      ++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+++|..+.|..|+||||+
T Consensus         2 ~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~~D~~~~RtEv~   81 (119)
T PRK05508          2 NELTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFDDEIKGAVKRIPDADGRRTEIV   81 (119)
T ss_pred             CcCCHHHHHHHHhcCCCCCCCCCCcCcCCCeEEEecCCCCccccccccccCCCCCcccCcccccceEEEecCCCcEEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             ccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343          212 CAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       212 C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~  249 (254)
                      |++||+||||||+|| ||+|||+|||||||||+|+|+.
T Consensus        82 C~~C~~HLGHVF~d~-gp~ptg~RyCINS~sL~F~p~~  118 (119)
T PRK05508         82 CANCGGHLGHVFEGE-GFTPKNTRHCVNSISLKFVPDK  118 (119)
T ss_pred             eCCCCCccCcccCCC-CCCCCCCEEeecceeEEeecCC
Confidence            999999999999975 5889999999999999999975

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=100.00  E-value=1.1e-64  Score=416.85  Aligned_cols=121  Identities=59%  Similarity=1.159  Sum_probs=110.3

Q ss_pred             HHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccCC-CeeeecCC-C
Q 025343          127 EEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPG-AINCSPDP-D  204 (254)
Q Consensus       127 ~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~~-~v~~~~d~-~  204 (254)
                      |+|||++|||+||+|||++|||+||||+|++++++|+|+|++||+|||+|++|||||||||||+++|++ +|....|. .
T Consensus         1 d~ew~~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~v~~~~D~s~   80 (124)
T PF01641_consen    1 DEEWRKRLTPEQYRVLREKGTERPFSGEYWDHKEEGIYVCAVCGTPLFSSDTKFDSGCGWPSFWQPIPGDAVKEREDFSH   80 (124)
T ss_dssp             -HHHHHHSCHHHHHHHHHTTSSSTTSSGGCCTTSSEEEEETTTS-EEEEGGGEETSSSSSSEESSCSSTTSEEEEEEECT
T ss_pred             CHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEcCCCCCccccCcccccCCcCCccccCcCChHHEEEeccccC
Confidence            689999999999999999999999999999999999999999999999999999999999999999965 99998886 5


Q ss_pred             CC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeC
Q 025343          205 GL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPA  248 (254)
Q Consensus       205 g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~  248 (254)
                      || ||||+|++||+||||||+| |+++|||+||||||+||+|+|+
T Consensus        81 g~~R~Ev~C~~Cg~HLGHVF~D-Gp~~~tg~RyCINS~sL~F~p~  124 (124)
T PF01641_consen   81 GMVRTEVRCARCGSHLGHVFDD-GPPPPTGLRYCINSASLKFIPK  124 (124)
T ss_dssp             SSEEEEEEETTTCCEEEEEEST-SSTTCTSCEEEE-GGGEEEEE-
T ss_pred             CceEEEEEecCCCCccccEeCC-CCCCCCCcEEEeeeeeEEEecC
Confidence            77 9999999999999999995 5334579999999999999995

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-63  Score=415.27  Aligned_cols=136  Identities=72%  Similarity=1.338  Sum_probs=127.8

Q ss_pred             ccCCCCCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc-C
Q 025343          116 VASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-P  194 (254)
Q Consensus       116 AaPk~~~~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i-~  194 (254)
                      .+|...+++++++|||++||||||+|||++|||+||+|+|++++++|+|+|++|++|||+|.+|||||||||||++.| +
T Consensus         7 ~~~~~~~v~k~~~EWr~~LsPeQ~~v~RekgTE~p~tGey~~~~e~GvY~C~~C~~pLykS~tKfdsgcGWPAF~e~i~~   86 (146)
T KOG0856|consen    7 VAPKTGSVQKNDEEWRKVLSPEQFRVLREKGTERPGTGEYTKHFEEGVYVCAGCGTPLYKSTTKFDSGCGWPAFFEAIGP   86 (146)
T ss_pred             ccCCCcccccCHHHHHhhcCHHHhhhhHhhcccCCCCcccccccCCceEEEeecCCccccccccccCCCCCchhhhccCC
Confidence            346678899999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             CCeeeecCC--CCCeeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCCCC
Q 025343          195 GAINCSPDP--DGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANSG  251 (254)
Q Consensus       195 ~~v~~~~d~--~g~RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~~~  251 (254)
                      ++|++++|.  .|+|+||+|++||+||||||.+||+..||++|||||||||+|.|++++
T Consensus        87 gaI~r~~d~s~~~~R~Ev~Ca~C~~HLGHVF~~eG~~~Pt~~R~CiNS~sL~F~~~~~s  145 (146)
T KOG0856|consen   87 GAITRTPDNSRGGRRTEVSCATCGGHLGHVFKGEGPKTPTDERHCINSVSLKFVPADSS  145 (146)
T ss_pred             CceeeccccCCCCcceEEEEeecCCceeeeecCCCCCCCCCceeEeeeeeeeeccCCCC
Confidence            999999995  356999999999999999999777555999999999999999999865

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=100.00  E-value=6.6e-58  Score=420.02  Aligned_cols=121  Identities=55%  Similarity=1.060  Sum_probs=115.9

Q ss_pred             HHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccCCCeeeecCCCCCee
Q 025343          129 EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRI  208 (254)
Q Consensus       129 ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~~~v~~~~d~~g~Rt  208 (254)
                      .||++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||+++|+++|..+.|..||||
T Consensus         2 ~~~~~Lt~~~y~v~r~~gTE~pf~g~~~~~~~~G~y~c~~c~~~LF~s~~Kf~sg~GWPsF~~~~~~~~~~~~d~~~~R~   81 (283)
T PRK05550          2 DKMKSLTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFDDEIPGAVKRLPDADGRRT   81 (283)
T ss_pred             hhhhhCCHHHHHHHHhcCCCCCCCCcCcCCCCCcEEEcCCCCchhcCChhhccCCCCCcCcCcccCCccEEEEcCCCceE
Confidence            69999999999999999999999999999999999999999999999999999999999999999998988888778999


Q ss_pred             EEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCCC
Q 025343          209 EITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANS  250 (254)
Q Consensus       209 Ev~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~~  250 (254)
                      ||+|++||+||||||+|| ||+|||+||||||+||+|+|.+.
T Consensus        82 Ev~c~~c~~HLGHvF~dd-gp~ptg~RyCiNs~sL~f~p~~~  122 (283)
T PRK05550         82 EIVCANCGAHLGHVFEGE-GLTPKNTRHCVNSASLDFVPAEE  122 (283)
T ss_pred             EEEecCCCCccCcccCCC-CCCCCCccccccccccccCcccc
Confidence            999999999999999976 48899999999999999999854

>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.7e-17  Score=141.71  Aligned_cols=70  Identities=17%  Similarity=0.181  Sum_probs=63.1

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCcee-eeccCC
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVV-LAVASG  119 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVV-laAaPk  119 (254)
                      -.||+|+|||+|++|+++|+++++++++++.++++| |||  |+|+++||+||||||   +|||.++..+ ....++
T Consensus        95 GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~I-vte--I~p~~~Fy~AEeYHQ~Yl~KNP~gY~~~~~~~~~~  168 (174)
T COG0225          95 GTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPI-VTE--IEPAKNFYPAEEYHQDYLKKNPNGYCHIGLTGAPK  168 (174)
T ss_pred             cccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCe-EEE--eeccccCcccHHHHHHHHHhCCCCceeeccccccc
Confidence            358999999999999999999999999987888899 999  999999999999999   9999999987 333443

>PRK14054 methionine sulfoxide reductase A; Provisional

Probab=99.57  E-value=1.1e-15  Score=132.24  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=64.6

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeeccCCC
Q 025343           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASGP  120 (254)
Q Consensus        46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaAaPk~  120 (254)
                      --.||+++|||+|++|+++|+++++++++.+.+.++| +|+  |+|+++||+||+|||   +|||.++.++....|+.
T Consensus        91 ~G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i-~Te--i~~~~~Fy~AEeyHQ~Yl~k~p~~~~~~~~~~~~~  165 (172)
T PRK14054         91 RGTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPI-VTE--VEPAETFYEAEEYHQDYLEKNPNGYCCIFVIPPKV  165 (172)
T ss_pred             CCcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCc-EEE--EecCCCceECHHHHHHHHHhCCCCcceeeccCHHH
Confidence            3579999999999999999999999998765578899 999  999999999999999   89999999988776643

>PRK13014 methionine sulfoxide reductase A; Provisional

Probab=99.54  E-value=6.4e-15  Score=129.09  Aligned_cols=72  Identities=17%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeeccCCC
Q 025343           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASGP  120 (254)
Q Consensus        46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaAaPk~  120 (254)
                      -..||+++|||+|++|+++|+++++.+++++.+.++| +|+  |+|+++||+||+|||   .|||.++++-....|+.
T Consensus        96 ~G~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i-~Te--i~p~~~Fy~AEeyHQ~Yl~k~p~~~yc~~~~~~~~  170 (186)
T PRK13014         96 RGEQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPI-VTP--IKPYKNFYPAEDYHQDYLKKNPTHPYIVYNDLPKG  170 (186)
T ss_pred             CCCCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCc-EEE--EecCCCeeeCHHHHHHHHHhCCCCCccEEEeChhh
Confidence            3579999999999999999999999998765678899 999  999999999999999   89999877755555543

>TIGR00401 msrA methionine-S-sulfoxide reductase

Probab=99.50  E-value=1.6e-14  Score=122.44  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---cccc
Q 025343           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRS  107 (254)
Q Consensus        46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP  107 (254)
                      --.||+|+|||+|++|+++|+++++++++++.+.++| +|+  |+|+++||+||+|||   +|||
T Consensus        88 ~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i-~te--i~~~~~Fy~AE~yHQ~Yl~k~p  149 (149)
T TIGR00401        88 IGTQYRSGIYYHSDEQEKAARASKERLQAAANYGDPI-VTE--IEPAENFYYAEEYHQQYLKKNP  149 (149)
T ss_pred             CCCCceEEEEeCCHHHHHHHHHHHHHHHHhcccCCCe-EEE--EecCCCeeecHHHHHHHHhhCc
Confidence            3579999999999999999999999998865678899 999  999999999999999   7887

This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.

>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=99.48  E-value=2.8e-14  Score=121.62  Aligned_cols=65  Identities=15%  Similarity=0.163  Sum_probs=57.2

Q ss_pred             ccccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCcee
Q 025343           45 TFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVV  113 (254)
Q Consensus        45 ~~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVV  113 (254)
                      ....||+++|||+|++|+++|++++++++.+ .+.++| +|+  |+|++.||+||+|||   .|||.++..+
T Consensus        87 d~G~qYrs~If~~~~~q~~~a~~~~~~~~~~-~~~~~i-~te--i~p~~~Fy~AE~yHQ~Yl~k~p~~yc~~  154 (155)
T PF01625_consen   87 DRGTQYRSAIFYHDEEQKKIAEASIAELQAK-RFGRPI-VTE--IEPLKNFYPAEEYHQKYLEKNPNGYCHY  154 (155)
T ss_dssp             EESGGG-EEEEESSHHHHHHHHHHHHHHHHH-TTSSSB-S-E--EEECEEEEEHHGGGTTHHHHSTTSTTSS
T ss_pred             cccccceeEEecCCHHHHHHHHHHHHHHHHh-cCCCCe-EEE--EecCCcEEECHHHHHHHHHhCCcccEec
Confidence            4568999999999999999999999999985 478899 999  999999999999999   8999997654

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....

>PRK05528 methionine sulfoxide reductase A; Provisional

Probab=99.45  E-value=7.1e-14  Score=119.50  Aligned_cols=60  Identities=5%  Similarity=-0.074  Sum_probs=53.8

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCcee
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVV  113 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVV  113 (254)
                      -.||+++|||+|++|+++|+++++.++.    .++| +|+  |.|+.+||+||+|||   +|||.+++.+
T Consensus        85 G~QYRS~If~~d~eQ~~~a~~~~~~~~~----~~~i-~Te--i~~~~~Fy~AE~yHQ~Yl~k~p~~yc~~  147 (156)
T PRK05528         85 GEKYRTGIYSEVDDHLIEARQFIERRED----ADKI-AVE--VLPLTNYVKSAEEHQDRLEKFPEDYCHI  147 (156)
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHHHHhc----CCCe-EEE--EecCCCeeecHHHHHHHHHhCCCCCccc
Confidence            4699999999999999999999988765    3589 999  999999999999999   8999987654

>PRK00058 methionine sulfoxide reductase A; Provisional

Probab=99.38  E-value=2.8e-13  Score=120.99  Aligned_cols=64  Identities=13%  Similarity=0.109  Sum_probs=54.5

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCC--CCceeeeccceeecccceechhhcc---ccccccCce
Q 025343           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLK--LKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV  112 (254)
Q Consensus        46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~--~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggV  112 (254)
                      -..||+++|||+|++|+++|+++++.+++....  .++| +|+  |+|++.||+||+|||   +|||.+++.
T Consensus       133 ~G~QYRS~Ify~~~eQ~~~a~~~~~~~~~~~~~~~~~~i-~Te--I~~~~~Fy~AEeyHQ~Yl~k~p~~yc~  201 (213)
T PRK00058        133 VGTQYRSAIYTLTPEQLAAAEASREAYQQALAAAGDGPI-TTE--IAPAPPFYYAEDYHQQYLAKNPNGYCG  201 (213)
T ss_pred             CCcCceEEEEeCCHHHHHHHHHHHHHHHHHhhhccCCCe-EEE--EecCCCcccCHHHHHHHHHhCCCCccc
Confidence            347999999999999999999999888763211  3479 998  999999999999999   899987654

>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.2e-12  Score=113.99  Aligned_cols=58  Identities=19%  Similarity=0.244  Sum_probs=52.4

Q ss_pred             cccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccC
Q 025343           48 SVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRG  110 (254)
Q Consensus        48 ~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~g  110 (254)
                      .||+|+||+++++|+++|+.++++.++.  ..++| +|+  |+|++.||.||||||   .|||..|
T Consensus       114 tQYRS~I~~~s~eq~k~A~~s~e~~Q~k--~~~kI-~T~--I~p~~kFY~AE~yHQqYl~K~~~~G  174 (191)
T KOG1635|consen  114 TQYRSGIYTYSPEQEKLARESKEREQKK--WNGKI-VTE--ILPAKKFYRAEEYHQQYLSKNPRNG  174 (191)
T ss_pred             ceeeeeeeeCCHHHHHHHHHHHHHHHhc--cCCcc-eEE--EeeccchhhchHHHHHHHhhCCCCc
Confidence            6999999999999999999999888873  67899 999  999999999999999   7888433

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=99.31  E-value=2e-12  Score=119.75  Aligned_cols=61  Identities=16%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCce
Q 025343           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV  112 (254)
Q Consensus        46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggV  112 (254)
                      -..||+++|||+|++|+++|+++++++++.+   ++| +|+  |+|+++||+||+|||   .|||.++++
T Consensus       215 ~G~QYRS~If~~d~eq~~~A~~~~~~~~~~~---~~i-~Te--I~~l~~Fy~AEeyHQ~Yl~k~p~~~yc  278 (283)
T PRK05550        215 IGTQYRSAIFYHDDEQKQIAEKLIAELTKKG---YPV-VTE--VEAAGPFYPAEDYHQDYYEKHGKQPYC  278 (283)
T ss_pred             CCcCceEEEEeCCHHHHHHHHHHHHHHHhcC---Cce-EEE--EeeCCCeeECHHHHHHHHHhCCCCCee
Confidence            3579999999999999999999999988753   289 998  999999999999999   899988443

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=90.85  E-value=0.13  Score=39.87  Aligned_cols=79  Identities=18%  Similarity=0.456  Sum_probs=46.2

Q ss_pred             EEEeccCCCCCCCCCCCcc-CCCCCcccc-cccCCCeeeec-----CCCC--CeeEEEccccCCCcccccCCCCCCCC--
Q 025343          163 IYNCSACGTPLYKSTTKFN-SGCGWPAFY-EGLPGAINCSP-----DPDG--LRIEITCAACGGHLGHVFKGEGFPTP--  231 (254)
Q Consensus       163 ~Y~C~~Cg~pLF~S~~KFd-Sg~GWPSF~-~~i~~~v~~~~-----d~~g--~RtEv~C~~Cg~HLGHVF~d~G~P~p--  231 (254)
                      +|.|+.|.++|=+|.+-.. .|..=++|- ..+...+...+     ...+  .-..+.|+.|+.+||=.+.-.  |+.  
T Consensus         2 vf~C~~C~t~l~ds~~lvs~~g~~~~a~l~~~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a--~~~~~   79 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVSFHGREGKAYLFNNVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESA--PEEQK   79 (96)
T ss_pred             EEECCCCCCCcCCHHHheecCCCCccEEEEeeeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEc--CHhHh
Confidence            7999999999987777666 442223332 22221111110     0111  157899999999999998741  222  


Q ss_pred             -CCceeeecccce
Q 025343          232 -TDERHCVNSISL  243 (254)
Q Consensus       232 -tg~RyCINs~aL  243 (254)
                       .--+|++.-++|
T Consensus        80 ~k~g~file~~~i   92 (96)
T PF03226_consen   80 YKEGKFILEKASI   92 (96)
T ss_pred             hhCCEEEEEhhHE
Confidence             334566665554

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
2k8d_A	151	Solution Structure Of A Zinc-Binding Methionine Sul		1e-28
3cez_A	164	Crystal Structure Of Methionine-R-Sulfoxide Reducta		3e-22
2l1u_A	143	Structure-Functional Analysis Of Mammalian Msrb2 Pr		3e-22
3hcj_A	154	Structure Of Msrb From Xanthomonas Campestris (Oxid		3e-20
3hci_A	154	Structure Of Msrb From Xanthomonas Campestris (Comp		5e-19
3e0m_A	313	Crystal Structure Of Fusion Protein Of Msra And Msr		5e-18
3hcg_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		5e-18
1l1d_A	152	Crystal Structure Of The C-Terminal Methionine Sulf		6e-18
3hch_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		3e-16
3e0o_A	144	Crystal Structure Of Msrb Length = 144		4e-16
2kzn_A	151	Solution Nmr Structure Of Peptide Methionine Sulfox		4e-16
3mao_A	105	Crystal Structure Of Human Methionine-R-Sulfoxide R		9e-12
2kv1_A	124	Insights Into Function, Catalytic Mechanism And Fol		2e-11

>pdb|2K8D|A Chain A, Solution Structure Of A Zinc-Binding Methionine Sulfoxide Reductase Length = 151

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 82/131 (62%), Gaps = 5/131 (3%)
Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           +  S++EWR IL PE FR+ R+  TE P TG+Y    ++GIY C  CGT L+ S TKF+S
Sbjct: 21  IELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDS 80
Query: 183 GCGWPAFYEGL-PGAINCSPDPD--GLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVN 239
           G GWP+FY+ +    I    D     +R E+ CA C  HLGHVF  +  P PT +R+C+N
Sbjct: 81  GTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTGKRYCMN 138
Query: 240 SISLKFVPANS 250
           S +LKF+P + 
Sbjct: 139 SAALKFIPRDQ 149

>pdb|3CEZ|A Chain A, Crystal Structure Of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei Length = 164

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 15/149 (10%)
Query: 111 GVVLAVASGPASVN-----------KSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHF 159
           G + A   GP S++           K + E R  L+P Q+ + +  ATE P TGEY    
Sbjct: 10  GTLEAQTQGPGSMSGDRDDPRYPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTE 69
Query: 160 EEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPG-AINCSPD-PDGL-RIEITCAACG 216
           + GIY+C  CGT L++S  K++SGCGWP++++ + G  I+   D   G+ R+E+ C  CG
Sbjct: 70  DAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCG 129
Query: 217 GHLGHVFKGEGFPTPTDERHCVNSISLKF 245
            HLGHVF+ +G    T  R+C+NS +L F
Sbjct: 130 AHLGHVFE-DGPRDKTGLRYCINSAALNF 157

>pdb|2L1U|A Chain A, Structure-Functional Analysis Of Mammalian Msrb2 Protein Length = 143

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 14/137 (10%)
Query: 129 EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPA 188
           +W+  L+PEQF + R+K TE P +G Y  + E G+Y+C  C +PL+ S  K+ SG GWP+
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62
Query: 189 FYEGLPGAINCSPDPDGL-----------RIEITCAACGGHLGHVFKGEGFPTPTDERHC 237
           F E   G+        G+           R+E+ C  C  HLGHVF     P PT +R C
Sbjct: 63  FSEAY-GSKGSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDG--PKPTGQRFC 119
Query: 238 VNSISLKFVPANSGSSM 254
           +NS++LKF P+   +++
Sbjct: 120 INSVALKFKPSKPAAAL 136

>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized Form) Length = 154

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 132 AILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191
           A LS E+ R+L    TE P  G +  +  +G+Y C  CG PL++S  KF+SG GWP+F+ 
Sbjct: 19  AGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78
Query: 192 GL-PGAINCSPDPD--GLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKF 245
              P  +    D     +R EI CA C  HLGHVF     P PT ERHC+NS+SL F
Sbjct: 79  PYDPAHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDG--PPPTGERHCLNSVSLAF 133

>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Complex-Like Form) Length = 154

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 132 AILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191
           A LS E+ R+L    TE P  G +  +  +G+Y C  CG PL++S  KF+SG GWP+F+ 
Sbjct: 19  AGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78
Query: 192 GL-PGAINCSPDPD--GLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKF 245
              P  +    D     +R EI CA C  HLGHVF     P PT ERH +NS+SL F
Sbjct: 79  PYDPAHVREIRDTSYGMVRTEIVCARCDSHLGHVFPDG--PPPTGERHSLNSVSLAF 133

>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+E  +A LS E +R+ ++ ATE P T  YD+ FEEGIY     G PL+ +  KF SGCG
Sbjct: 172 SQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCG 231
Query: 186 WPAFYEGLPGA-INCSPD-PDGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSIS 242
           WP+F   L    I+   D   G+ RIE+   +   HLGHVF  +G       R+C+NS S
Sbjct: 232 WPSFSRPLSKELIHYYKDLSHGMERIEVRSRSGSAHLGHVFT-DGPRELGGLRYCINSAS 290
Query: 243 LKFVPANS 250
           L+FV  + 
Sbjct: 291 LRFVAKDE 298

>pdb|3HCG|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 146

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 10/128 (7%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++SGCG
Sbjct: 6   SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 65
Query: 186 WPAFYEGLPGAINCSPDP---DGLRIEITCAACGGHLGHVFKGEGFPTPTDE---RHCVN 239
           WP+F   +        D    +  R E+   A   HLGHVF       P D+   R+C+N
Sbjct: 66  WPSFTRPIDAKSVTEHDDFSYNXRRTEVRSHAADSHLGHVFPD----GPRDKGGLRYCIN 121
Query: 240 SISLKFVP 247
             SLKF+P
Sbjct: 122 GASLKFIP 129

>pdb|1L1D|A Chain A, Crystal Structure Of The C-Terminal Methionine Sulfoxide Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb Length = 152

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 10/128 (7%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++SGCG
Sbjct: 12  SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 71
Query: 186 WPAFYEGLPGAINCSPDP---DGLRIEITCAACGGHLGHVFKGEGFPTPTDE---RHCVN 239
           WP+F   +        D    +  R E+   A   HLGHVF       P D+   R+C+N
Sbjct: 72  WPSFTRPIDAKSVTEHDDFSFNXRRTEVRSRAADSHLGHVFPD----GPRDKGGLRYCIN 127
Query: 240 SISLKFVP 247
             SLKF+P
Sbjct: 128 GASLKFIP 135

>pdb|3HCH|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Complex With Substrate) Length = 146

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++SG G
Sbjct: 6   SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGSG 65
Query: 186 WPAFYEGLPGAINCSPDP---DGLRIEITCAACGGHLGHVFKGEGFPTPTDE---RHCVN 239
           WP+F   +        D    +  R E+   A   HLGHVF       P D+   R+ +N
Sbjct: 66  WPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPD----GPRDKGGLRYSIN 121
Query: 240 SISLKFVP 247
             SLKF+P
Sbjct: 122 GASLKFIP 129

>pdb|3E0O|A Chain A, Crystal Structure Of Msrb Length = 144

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           ++EE    L+  Q+ + +   TE P   EY  H EEG+Y     G PL+ S  KF+S CG
Sbjct: 5   NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 64
Query: 186 WPAFYEGLPGAINCSPDPDG--LRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISL 243
           WP+F + +   +    D     +R E+       HLGHVF  +G P P   R+C+NS +L
Sbjct: 65  WPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVF-NDG-PGPNGLRYCINSAAL 122
Query: 244 KFVPAN 249
           +FVP +
Sbjct: 123 RFVPKH 128

>pdb|2KZN|A Chain A, Solution Nmr Structure Of Peptide Methionine Sulfoxide Reductase Msrb From Bacillus Subtilis, Northeast Structural Genomics Consortium Target Sr10 Length = 151

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           ++EE    L+  Q+ + +   TE P   EY  H EEG+Y     G PL+ S  KF+S CG
Sbjct: 4   NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 63
Query: 186 WPAFYEGLPGAINCSPDPDG--LRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISL 243
           WP+F + +   +    D     +R E+       HLGHVF  +G P P   R+C+NS +L
Sbjct: 64  WPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVF-NDG-PGPNGLRYCINSAAL 121
Query: 244 KFVPAN 249
           +FVP +
Sbjct: 122 RFVPKH 127

>pdb|3MAO|A Chain A, Crystal Structure Of Human Methionine-R-Sulfoxide Reductase B1 (Msrb1) Length = 105

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 155 YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLR---IEIT 211
           +  HFE G+Y C+ CG  L+ S +K+     WPAF E +  A + +  P+  R   ++++
Sbjct: 5   FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETI-HADSVAKRPEHNRSEALKVS 63
Query: 212 CAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVP 247
           C  CG  LGH F  +G P P   R  + S SLKFVP
Sbjct: 64  CGKCGNGLGHEFLNDG-PKPGQSRFSIFSSSLKFVP 98

>pdb|2KV1|A Chain A, Insights Into Function, Catalytic Mechanism And Fold Evolution Of Mouse Selenoprotein Methionine Sulfoxide Reductase B1 Through Structural Analysis Length = 124

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 155 YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCSPD---PDGLRIEI 210
           +  HFE G+Y C+ C   L+ S +K+     WPAF E + P ++   P+   P+ L+  +
Sbjct: 12  FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALK--V 69
Query: 211 TCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVP 247
           +C  CG  LGH F  +G P     R C+ S SLKFVP
Sbjct: 70  SCGKCGNGLGHEFLNDG-PKRGQSRFCIFSSSLKFVP 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	2e-66
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	5e-64
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	9e-62
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	2e-60
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	3e-60
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	9e-58
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	2e-48
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	1e-47
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	9e-41

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} Length = 151

 Score =  202 bits (515), Expect = 2e-66
 Identities = 60/130 (46%), Positives = 82/130 (63%), Gaps = 5/130 (3%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           +  S++EWR IL PE FR+ R+  TE P TG+Y    ++GIY C  CGT L+ S TKF+S
Sbjct: 21  IELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDS 80

Query: 183 GCGWPAFYEGL-PGAINCSPDPD--GLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVN 239
           G GWP+FY+ +    I    D     +R E+ CA C  HLGHVF  +  P PT +R+C+N
Sbjct: 81  GTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTGKRYCMN 138

Query: 240 SISLKFVPAN 249
           S +LKF+P +
Sbjct: 139 SAALKFIPRD 148

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A* Length = 154

 Score =  195 bits (499), Expect = 5e-64
 Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 5/130 (3%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
                +   A LS E+ R+L    TE P  G +  +  +G+Y C  CG PL++S  KF+S
Sbjct: 10  SPAQRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDS 69

Query: 183 GCGWPAFYEGL-PGAINCSPDPD-G-LRIEITCAACGGHLGHVFKGEGFPTPTDERHCVN 239
           G GWP+F+    P  +    D   G +R EI CA C  HLGHVF     P PT ERHC+N
Sbjct: 70  GTGWPSFFAPYDPAHVREIRDTSYGMIRTEIVCARCDSHLGHVF--PDGPPPTGERHCLN 127

Query: 240 SISLKFVPAN 249
           S+SL F    
Sbjct: 128 SVSLAFTEDG 137

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus} Length = 143

 Score =  189 bits (483), Expect = 9e-62
 Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 12/135 (8%)

Query: 129 EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPA 188
           +W+  L+PEQF + R+K TE P +G Y  + E G+Y+C  C +PL+ S  K+ SG GWP+
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62

Query: 189 FYEGLPGAINCSPD------PDG----LRIEITCAACGGHLGHVFKGEGFPTPTDERHCV 238
           F E      +           D      R+E+ C  C  HLGHVF     P PT +R C+
Sbjct: 63  FSEAYGSKGSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVF--PDGPKPTGQRFCI 120

Query: 239 NSISLKFVPANSGSS 253
           NS++LKF P+   ++
Sbjct: 121 NSVALKFKPSKPAAA 135

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A Length = 164

 Score =  187 bits (477), Expect = 2e-60
 Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 4/128 (3%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
             K + E R  L+P Q+ + +  ATE P TGEY    + GIY+C  CGT L++S  K++S
Sbjct: 33  YPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHS 92

Query: 183 GCGWPAFYEGL-PGAINCSPDPDG--LRIEITCAACGGHLGHVFKGEGFPTPTDERHCVN 239
           GCGWP++++ +    I+   D      R+E+ C  CG HLGHVF+ +G    T  R+C+N
Sbjct: 93  GCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCIN 151

Query: 240 SISLKFVP 247
           S +L F  
Sbjct: 152 SAALNFEA 159

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} PDB: 1xm0_A 2kzn_A Length = 144

 Score =  185 bits (473), Expect = 3e-60
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           +  ++EE    L+  Q+ + +   TE P   EY  H EEG+Y     G PL+ S  KF+S
Sbjct: 2   MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDS 61

Query: 183 GCGWPAFYEGLPGAINCSPDPDG--LRIEITCAACGGHLGHVFK-GEGFPTPTDERHCVN 239
            CGWP+F + +   +    D     +R E+       HLGHVF  G   P P   R+C+N
Sbjct: 62  QCGWPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFNDG---PGPNGLRYCIN 118

Query: 240 SISLKFVP 247
           S +L+FVP
Sbjct: 119 SAALRFVP 126

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} PDB: 3hch_A* 1l1d_A Length = 146

 Score =  179 bits (457), Expect = 9e-58
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 8/130 (6%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
              S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++S
Sbjct: 3   KKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDS 62

Query: 183 GCGWPAFYEGL-PGAINCSPDPDG--LRIEITCAACGGHLGHVFK-GEGFPTPTD-ERHC 237
           GCGWP+F   +   ++    D      R E+   A   HLGHVF  G   P      R+C
Sbjct: 63  GCGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDG---PRDKGGLRYC 119

Query: 238 VNSISLKFVP 247
           +N  SLKF+P
Sbjct: 120 INGASLKFIP 129

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens} Length = 105

 Score =  154 bits (391), Expect = 2e-48
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 152 TGE-YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPG-AINCSPDPD-GLRI 208
           + E +  HFE G+Y C+ CG  L+ S +K+     WPAF E +   ++   P+ +    +
Sbjct: 1   SMEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEAL 60

Query: 209 EITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN 249
           +++C  CG  LGH F  +G P P   R  + S SLKFVP  
Sbjct: 61  KVSCGKCGNGLGHEFLNDG-PKPGQSRFSIFSSSLKFVPKG 100

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313

 Score =  141 bits (357), Expect = 9e-41
 Identities = 52/127 (40%), Positives = 68/127 (53%), Gaps = 4/127 (3%)

Query: 124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSG 183
             S+E  +A LS E +R+ ++ ATE P T  YD+ FEEGIY     G PL+ +  KF SG
Sbjct: 170 KPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASG 229

Query: 184 CGWPAFYEGL-PGAINCSPDPDGL--RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNS 240
           CGWP+F   L    I+   D      RIE+   +   HLGHVF           R+C+NS
Sbjct: 230 CGWPSFSRPLSKELIHYYKDLSHGMERIEVRSRSGSAHLGHVFTDGPRE-LGGLRYCINS 288

Query: 241 ISLKFVP 247
            SL+FV 
Sbjct: 289 ASLRFVA 295

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	100.0
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	100.0
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	100.0
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	100.0
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	100.0
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	100.0
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	100.0
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	100.0
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	100.0
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	100.0
1nwa_A	203	Peptide methionine sulfoxide reductase MSRA; oxido	99.76
4gwb_A	168	Peptide methionine sulfoxide reductase MSRA 3; str	99.64
3bqh_A	193	PILB, peptide methionine sulfoxide reductase MSRA/	99.62
3pim_A	187	Peptide methionine sulfoxide reductase; methionine	99.59
1ff3_A	211	Peptide methionine sulfoxide reductase; alpha beta	99.51
2j89_A	261	Methionine sulfoxide reductase A; MSRA, poplar, ox	99.5
1fvg_A	199	Peptide methionine sulfoxide reductase; oxidoreduc	99.46

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=100.00  E-value=3.8e-79  Score=564.72  Aligned_cols=196  Identities=29%  Similarity=0.443  Sum_probs=178.4

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeeccC---CC
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVAS---GP  120 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaAaP---k~  120 (254)
                      -.||+|+|||+|++|+++|++++++++.  .+.++| |||  |+|+.+||+||+|||   +|||.+++.+....-   ..
T Consensus        89 G~QYRS~Ify~~~~Q~~~a~~~~~~~~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Yc~~~~~~~~~~~~  163 (313)
T 3e0m_A           89 GRQYRTGIYYQDEADLPAIYTVVQEQER--MLGRKI-AVE--VEQLRHYILAEDYHQDYLRKNPSGYCHIDVTDADKPLI  163 (313)
T ss_dssp             SGGGCCEEEESCGGGHHHHHHHHHHHHH--HHSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTCCCCSCGGGGTSCCC
T ss_pred             ccccceeEecCCHHHHHHHHHHHHHHHH--hcCCCe-EEE--EeeccceeEcHHHHHHHHHHCCCcceeeecccchhhhh
Confidence            4799999999999999999999999987  468899 999  999999999999999   899998876664421   11


Q ss_pred             C---CCCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc-CCC
Q 025343          121 A---SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGA  196 (254)
Q Consensus       121 ~---~~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i-~~~  196 (254)
                      .   -..++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++
T Consensus       164 ~~~~Y~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~  243 (313)
T 3e0m_A          164 DAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKEL  243 (313)
T ss_dssp             CGGGGCCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGG
T ss_pred             cccccccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCc
Confidence            1   245799999999999999999999999999999999999999999999999999999999999999999999 578


Q ss_pred             eeeecCC-CCC-eeEEEccccCCCcccccCCCCCC-CCCCceeeecccceeeeeCC
Q 025343          197 INCSPDP-DGL-RIEITCAACGGHLGHVFKGEGFP-TPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       197 v~~~~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P-~ptg~RyCINs~aL~F~p~~  249 (254)
                      |....|. +|| ||||+|++||+||||||+| | | +|||+||||||+||+|+|.+
T Consensus       244 v~~~~D~s~gm~RtEv~c~~c~~HLGHVF~D-G-p~~ptg~RyCiNs~sL~F~p~~  297 (313)
T 3e0m_A          244 IHYYKDLSHGMERIEVRSRSGSAHLGHVFTD-G-PRELGGLRYCINSASLRFVAKD  297 (313)
T ss_dssp             EEEEEECCTTCCEEEEEESSSCCEEEEEESC-S-CTTTTSCEEEECGGGEEEEEHH
T ss_pred             eEEeecCCCCcEEEEEECCCCCCccCcccCC-C-CCCCCCCEEeeceeeEeeeccc
Confidence            9988886 687 9999999999999999986 4 6 79999999999999999974

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=100.00  E-value=4.2e-67  Score=438.65  Aligned_cols=125  Identities=37%  Similarity=0.666  Sum_probs=118.7

Q ss_pred             CCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccCCCeeeecC
Q 025343          123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPD  202 (254)
Q Consensus       123 ~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~~~v~~~~d  202 (254)
                      +.++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+++|.+..|
T Consensus         2 ~~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D   81 (144)
T 3e0o_A            2 MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLD   81 (144)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEE
T ss_pred             CCCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeec
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999889998888


Q ss_pred             C-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343          203 P-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       203 ~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~  249 (254)
                      . +|| ||||+|++||+||||||+|  ||+|||+|||||||||+|+|.+
T Consensus        82 ~s~gm~RtEV~C~~Cg~HLGHVF~D--GP~ptg~RyCiNS~sL~F~p~~  128 (144)
T 3e0o_A           82 TSHGMIRTEVRSRTADSHLGHVFND--GPGPNGLRYCINSAALRFVPKH  128 (144)
T ss_dssp             CCTTSCEEEEEETTTCCEEEEEESC--CSSTTCCEEEECGGGEEEEEHH
T ss_pred             CCCCceEEEEEcCCCCCccCCccCC--CCCCCCCEeeeceeeEeeeech
Confidence            6 687 9999999999999999986  4899999999999999999974

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=100.00  E-value=1e-65  Score=437.82  Aligned_cols=128  Identities=41%  Similarity=0.823  Sum_probs=120.2

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeee
Q 025343          121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINC  199 (254)
Q Consensus       121 ~~~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~  199 (254)
                      .++.++|+|||++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|..
T Consensus        31 ~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V~~  110 (164)
T 3cxk_A           31 YPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDE  110 (164)
T ss_dssp             CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSEEE
T ss_pred             cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCceEE
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999996 47888


Q ss_pred             ecCC-CCC-eeEEEccccCCCcccccCCCCCC-CCCCceeeecccceeeeeCCC
Q 025343          200 SPDP-DGL-RIEITCAACGGHLGHVFKGEGFP-TPTDERHCVNSISLKFVPANS  250 (254)
Q Consensus       200 ~~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P-~ptg~RyCINs~aL~F~p~~~  250 (254)
                      ..|. +|| ||||+|++||+||||||+|  || +|||+|||||||||+|+|++.
T Consensus       111 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~D--GP~~ptg~RyCINS~sL~F~p~~~  162 (164)
T 3cxk_A          111 KMDYTHGMTRVEVRCNQCGAHLGHVFED--GPRDKTGLRYCINSAALNFEAKPE  162 (164)
T ss_dssp             EEECGGGCCEEEEEETTTCCEEEEEESC--SCTTTTSCEEEECGGGEEEEECC-
T ss_pred             eECCCCCcEEEEEEeCCCCCccCcccCC--CCCCCCCCEEeeceeeEeeecccc
Confidence            8886 576 9999999999999999986  47 899999999999999999764

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.3e-66  Score=438.46  Aligned_cols=127  Identities=48%  Similarity=0.967  Sum_probs=120.1

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeee
Q 025343          121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINC  199 (254)
Q Consensus       121 ~~~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~  199 (254)
                      .++.++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus        19 ~~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~   98 (151)
T 2k8d_A           19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKL   98 (151)
T ss_dssp             ECSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEEC
T ss_pred             cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999996 58999


Q ss_pred             ecCC-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343          200 SPDP-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       200 ~~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~  249 (254)
                      ..|. +|| ||||+|++||+||||||+|  ||+|||+|||||||||+|+|.+
T Consensus        99 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~D--GP~ptg~RyCINS~sL~F~p~~  148 (151)
T 2k8d_A           99 REDRSLGMVRCEVLCARCDAHLGHVFDD--GPRPTGKRYCMNSAALKFIPRD  148 (151)
T ss_dssp             CCCBTTSSCEEEEEETTEEEEEEEEEEC--SSSSSCEEEEECSTTEEEECSS
T ss_pred             eeCCCCCceEEEEEeCCCCCcCCcccCC--CCCCCCCEEeeceeeecccchH
Confidence            8886 577 9999999999999999986  4889999999999999999975

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=100.00  E-value=2.7e-66  Score=434.79  Aligned_cols=125  Identities=38%  Similarity=0.698  Sum_probs=117.0

Q ss_pred             CCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeeeecC
Q 025343          124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINCSPD  202 (254)
Q Consensus       124 ~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~~~d  202 (254)
                      .++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|....|
T Consensus         4 ~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D   83 (146)
T 3hcg_A            4 KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDD   83 (146)
T ss_dssp             CCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEEEE
T ss_pred             CCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEeec
Confidence            57999999999999999999999999999999999999999999999999999999999999999999995 68988888


Q ss_pred             C-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343          203 P-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       203 ~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~  249 (254)
                      . +|| ||||+|++||+||||||+| |+++|||+|||||||||+|+|.+
T Consensus        84 ~s~gm~RtEV~C~~Cg~HLGHVF~D-GP~~~tg~RyCiNS~sL~F~p~~  131 (146)
T 3hcg_A           84 FSYNMRRTEVRSHAADSHLGHVFPD-GPRDKGGLRYCINGASLKFIPLE  131 (146)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEESC-SCGGGTSCEEEECGGGEEEEEHH
T ss_pred             CCCCcEEEEEEeCCCCCccCceeCC-CCCCCCCCEEeeeeEEEEeeehH
Confidence            5 687 9999999999999999986 43347999999999999999964

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=100.00  E-value=6.1e-65  Score=429.33  Aligned_cols=122  Identities=43%  Similarity=0.808  Sum_probs=115.6

Q ss_pred             CHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeeeecCC-
Q 025343          126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINCSPDP-  203 (254)
Q Consensus       126 s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~~~d~-  203 (254)
                      ..++||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+..|. 
T Consensus        13 ~~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s   92 (154)
T 3hcj_A           13 QRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTS   92 (154)
T ss_dssp             HHHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTT
T ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCC
Confidence            456899999999999999999999999999999999999999999999999999999999999999995 689988886 


Q ss_pred             CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343          204 DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       204 ~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~  249 (254)
                      +|| ||||+|++||+||||||+|  ||.|||+|||||||||+|+|.+
T Consensus        93 ~gm~RtEV~C~~Cg~HLGHVF~D--GP~ptg~RyCiNS~sL~F~p~~  137 (154)
T 3hcj_A           93 YGMIRTEIVCARCDSHLGHVFPD--GPPPTGERHCLNSVSLAFTEDG  137 (154)
T ss_dssp             TTTSCEEEEETTTCCEEEEEESC--SCTTTTCEEEECGGGEEEEETT
T ss_pred             CCceEEEEEeCCCCCccCCccCC--CCCCCCCEeeeceeeEEeeeCC
Confidence            687 9999999999999999986  4889999999999999999985

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=100.00  E-value=1.5e-65  Score=429.02  Aligned_cols=122  Identities=43%  Similarity=0.877  Sum_probs=115.8

Q ss_pred             HHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc--------CCCeee
Q 025343          128 EEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL--------PGAINC  199 (254)
Q Consensus       128 ~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i--------~~~v~~  199 (254)
                      +|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||        +++|..
T Consensus         2 ~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~~   81 (143)
T 2l1u_A            2 ADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGILR   81 (143)
T ss_dssp             CCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEEE
T ss_pred             hHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999        789999


Q ss_pred             ecCC-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCCCC
Q 025343          200 SPDP-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANSG  251 (254)
Q Consensus       200 ~~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~~~  251 (254)
                      ..|. .|| ||||+|++||+||||||+|  ||+|||+|||||||||+|+|.+.-
T Consensus        82 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~D--GP~ptg~RyCINS~sL~F~p~~~~  133 (143)
T 2l1u_A           82 RLDTSLGCPRMEVVCKQCEAHLGHVFPD--GPKPTGQRFCINSVALKFKPSKPA  133 (143)
T ss_dssp             EEECTTSSCEEEEEESSSCCCCEEEECC--SSCGGGCEEEECCTTEEEEESSBT
T ss_pred             eecccCCceEEEEEECCCCCcCCcccCC--CCCCCCCEEEeeeeEEeccchhhh
Confidence            8886 577 9999999999999999986  488999999999999999998643

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=100.00  E-value=1.3e-52  Score=343.43  Aligned_cols=100  Identities=37%  Similarity=0.821  Sum_probs=91.5

Q ss_pred             CCCCCC-CCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc-CCCeeeecCCCC-CeeEEEccccCCCcccccCC
Q 025343          149 YPGTGE-YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCSPDPDG-LRIEITCAACGGHLGHVFKG  225 (254)
Q Consensus       149 ~pfsg~-y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i-~~~v~~~~d~~g-~RtEv~C~~Cg~HLGHVF~d  225 (254)
                      .+|+|+ ||+++++|+|+|++||+|||+|++|||||||||||++|| +++|...+|..+ +||||+|++||+||||||.|
T Consensus         5 ~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~~~~r~Ev~C~~Cg~HLGHVF~~   84 (124)
T 2kv1_A            5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSCGKCGNGLGHEFLN   84 (124)
T ss_dssp             CCCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSSSTTCEEEECTTTTCCCEEECTT
T ss_pred             cCccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEEeccCCceEEEEEEecCCCccCCccCC
Confidence            389999 778899999999999999999999999999999999999 567888888765 59999999999999999954


Q ss_pred             CCCCCCCCceeeecccceeeeeCC
Q 025343          226 EGFPTPTDERHCVNSISLKFVPAN  249 (254)
Q Consensus       226 ~G~P~ptg~RyCINs~aL~F~p~~  249 (254)
                      || |+|||+|||||||||+|+|++
T Consensus        85 DG-P~ptg~RyCINS~sL~F~p~~  107 (124)
T 2kv1_A           85 DG-PKRGQSRFCIFSSSLKFVPKG  107 (124)
T ss_dssp             SC-TTTTCSCEECCTTTEEEEECS
T ss_pred             CC-CCCCCCEEeecceeeEeEECc
Confidence            44 899999999999999999975

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=100.00  E-value=2.5e-52  Score=333.60  Aligned_cols=97  Identities=36%  Similarity=0.823  Sum_probs=88.9

Q ss_pred             CCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeeeecCCCCC-eeEEEccccCCCcccccCCCCCCC
Q 025343          153 GEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINCSPDPDGL-RIEITCAACGGHLGHVFKGEGFPT  230 (254)
Q Consensus       153 g~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~~~d~~g~-RtEv~C~~Cg~HLGHVF~d~G~P~  230 (254)
                      -+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+..|..+| ||||+|++||+||||||++|| |+
T Consensus         3 e~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~~~~~RtEV~C~~C~~HLGHVF~~DG-P~   81 (105)
T 3mao_A            3 EVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDG-PK   81 (105)
T ss_dssp             CCCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEEECTTSTTEEEEEETTTCCEEEEEETTCS-SS
T ss_pred             ccccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEEecCCCCCEEEEEeCCCCCccCcccCCCC-cC
Confidence            379999999999999999999999999999999999999995 689888886444 999999999999999995455 88


Q ss_pred             CCCceeeecccceeeeeCCC
Q 025343          231 PTDERHCVNSISLKFVPANS  250 (254)
Q Consensus       231 ptg~RyCINs~aL~F~p~~~  250 (254)
                      |||+|||||||||+|+|.+.
T Consensus        82 ptg~RyCiNS~sL~F~p~~~  101 (105)
T 3mao_A           82 PGQSRFSIFSSSLKFVPKGK  101 (105)
T ss_dssp             TTCCEEEECGGGEEEEETTC
T ss_pred             CCCCEEeeCeeeEEeeeccc
Confidence            99999999999999999864

>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1

Probab=99.76  E-value=5.6e-19  Score=155.07  Aligned_cols=88  Identities=19%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeeccCCCCCC
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASGPASV  123 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaAaPk~~~~  123 (254)
                      -.||+|+|||+|++|+++|+++++++++++.++++| |||  |+|+++||+||+|||   +|||.+|++ .+..|+..++
T Consensus       110 GtQYRSaIfy~~~eQ~~~A~~~~~~lq~~g~~~~~I-vTe--I~p~~~Fy~AE~YHQ~Yl~knP~~Y~c-~~~~~~~~k~  185 (203)
T 1nwa_A          110 GTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKV-VTE--VSPAGDFWEAEPEHQDYLQRYPNGYTC-HFVRPGWRLP  185 (203)
T ss_dssp             SGGGCEEEEESSHHHHHHHHHHHHHHHHHCCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCC-CCCCTTSCCS
T ss_pred             CccccccccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEE--EecCCCEEEChHHHHHHHHhCCCCCcc-cccHHHHHhh
Confidence            469999999999999999999999999877788999 999  999999999999999   899999744 3355666666


Q ss_pred             CCC-HHHHHhcCCHHH
Q 025343          124 NKS-EEEWRAILSPEQ  138 (254)
Q Consensus       124 ~~s-~~ewr~~Ltp~q  138 (254)
                      .+. +.+||..|||+-
T Consensus       186 ~~~a~~~~~~~~~~~~  201 (203)
T 1nwa_A          186 RRTAESALRASLSPEL  201 (203)
T ss_dssp             CC--------------
T ss_pred             hhhhhhhhhhhcCccc
Confidence            554 445999999973

>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}

Probab=99.64  E-value=1.6e-16  Score=136.07  Aligned_cols=64  Identities=11%  Similarity=0.058  Sum_probs=59.3

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCce
Q 025343           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV  112 (254)
Q Consensus        46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggV  112 (254)
                      .-.||+|+|||+|++|+++|+++++++++++.+.++| |||  |+|+++||+||+|||   +|||.++.+
T Consensus        86 ~G~QYRS~If~~~~~Q~~~a~~~~~~l~~~~~~~~~I-vTe--i~p~~~Fy~AE~yHQ~Yl~knP~~y~C  152 (168)
T 4gwb_A           86 IGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKV-VTE--VEPVRDFWEAEPEHQNYLERYPNGYTC  152 (168)
T ss_dssp             ESGGGCEEEEESSHHHHHHHHHHHHHHHHHTCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCC
T ss_pred             CCcCceEEEecCCHHHHHHHHHHHHHHHHcccCCCCE-EEE--EEecCCeeECHHHHHHHHHhCCCCCcc
Confidence            3469999999999999999999999998877788999 999  999999999999999   899999855

>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A

Probab=99.62  E-value=4.5e-16  Score=135.77  Aligned_cols=66  Identities=14%  Similarity=0.082  Sum_probs=57.4

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeec
Q 025343           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAV  116 (254)
Q Consensus        46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaA  116 (254)
                      --.||+|+|||+|++|+++|+++++.+++  .+.++| |||  |+|+.+||+||+|||   .|||.+++.+...
T Consensus        90 ~G~QYRS~If~~~~~Q~~~A~~~~~~~~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knp~~Yc~~~~~  158 (193)
T 3bqh_A           90 TGTQYRSGVYYTDPAEKAVIAAALKREQQ--KYQLPL-VVE--NEPLKNFYDAEEYHQDYLIKNPNGYCHIDIR  158 (193)
T ss_dssp             TTCTTCEEEEESSHHHHHHHHHHHHHHHT--TCSSCB-CCE--EEECCCEEECCGGGTTHHHHCTTCCC---CC
T ss_pred             cCccceeeeecCCHHHHHHHHHHHHHHHH--HhCCCe-EEE--EecCCCeeEcHHHHHHHHHhCCCCceeeecc
Confidence            45799999999999999999999999987  378899 999  999999999999999   8999987765433

>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B

Probab=99.59  E-value=5.9e-16  Score=134.50  Aligned_cols=62  Identities=15%  Similarity=0.099  Sum_probs=57.0

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCce
Q 025343           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV  112 (254)
Q Consensus        46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggV  112 (254)
                      --.||+|+|||+|++|+++|+++++++++  .+.++| |||  |+|+++||+||+|||   +|||.++++
T Consensus       115 ~G~QYRS~Ify~~~~Q~~~A~~~~~~l~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Ycc  179 (187)
T 3pim_A          115 KGTQYRSGLFAHSDADLKELAKIKEEWQP--KWGNKI-ATV--IEPIKNFYDAEEYHQLYLDKNPQGYAC  179 (187)
T ss_dssp             -CGGGCCEEEESSHHHHHHHHHHHHHHGG--GGTTCB-CCE--EEEEEEEEEHHHHHHHHCTTCTTCTTC
T ss_pred             cCcccceeeEeCCHHHHHHHHHHHHHHHH--HhCCCc-EEE--EeeCCCeeecHHHHHHHHHHCCCCCCC
Confidence            34799999999999999999999999987  478899 999  999999999999999   899998876

>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A

Probab=99.51  E-value=6.9e-15  Score=129.82  Aligned_cols=64  Identities=11%  Similarity=0.105  Sum_probs=55.5

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccC---CCCCCceeeeccceeecccceechhhcc---ccccccCcee
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPS---LLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVV  113 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s---~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVV  113 (254)
                      -.||+|+|||+|++|+++|+++++.+++.   ..++++| |||  |+|+.+||+||+|||   +|||.+|+.+
T Consensus       131 GtQYRSaIf~~~~eQ~~~A~~~~~~~q~~l~~~g~~~~I-vTe--I~p~~~Fy~AE~YHQ~Yl~knP~~Yc~~  200 (211)
T 1ff3_A          131 GTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHI-TTE--IANATPFYYAEDDHQQYLHKNPYGYCGI  200 (211)
T ss_dssp             SGGGCCEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCE--ECCCCCEEECCGGGTTHHHHSCCCCCCC
T ss_pred             CccceeeeecCCHHHHHHHHHHHHHHHHHHhhcccCCce-EEE--EeeCCCceeChHHHHHHHHHCCCCCcCc
Confidence            46999999999999999999999877652   1267789 999  999999999999999   8999976553

>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}

Probab=99.50  E-value=2.6e-14  Score=129.31  Aligned_cols=65  Identities=17%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeec
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAV  116 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaA  116 (254)
                      -.||+++|||+|++|+++|+++++++++.  +.++| |||  |+|+.+||+||||||   +|||..++-..++
T Consensus       183 GtQYRSaIfy~~eeQ~~~Ae~s~~~~q~~--~~~~I-vTE--I~p~~~Fy~AEdYHQ~Yl~Kn~~~gy~qsa~  250 (261)
T 2j89_A          183 GTQYRSGIYYYTPEQEKAAKESLERQQKL--LNRKI-VTE--ILPAKKFYRAEEYHQQYLAKGGRFGFMQSAE  250 (261)
T ss_dssp             SGGGCEEEEESSHHHHHHHHHHHHHHHTT--CSSCC-CCE--EEECCCEEECCGGGTTTTTTTTTTSCCCCCC
T ss_pred             CccccccccCCCHHHHHHHHHHHHHHHHh--cCCCc-EEE--EecCCCeeECHHHHHHHHHHCCCCCCccccc
Confidence            46999999999999999999999999874  67899 999  999999999999999   8999877743333

>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*

Probab=99.46  E-value=1.6e-14  Score=126.59  Aligned_cols=61  Identities=13%  Similarity=0.007  Sum_probs=52.6

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCC---CCCCceeeeccceeecccceechhhcc---ccccccCc
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSL---LKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGG  111 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~---~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~gg  111 (254)
                      -.||+|+|||+|++|+++|+++++.+++..   .+ ++| |||  |+|+++||+||+|||   +|||.+|+
T Consensus       132 G~QYRS~If~~~~~Q~~~A~~~~~~~q~~~~~~g~-~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Yc  198 (199)
T 1fvg_A          132 GSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGF-GLI-TTD--IREGQTFYYAEDYHQQYLSKDPDGYC  198 (199)
T ss_dssp             SGGGCEEECCSSHHHHHHHHHHHHHHHHHHHHTTC-CCC-CCE--ECSSCCCEECCGGGTTHHHHSTTCCC
T ss_pred             ChhheeccccCCHHHHHHHHHHHHHHHHHHhhcCC-CCe-EEE--EeeCCCeeECHHHHHHHHHhCCCCCC
Confidence            469999999999999999999998776521   12 589 999  999999999999999   89998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1xm0a1	143	b.88.1.3 (A:1-143) Peptide methionine sulfoxide re	1e-45
d1l1da_	144	b.88.1.3 (A:) C-terminal MsrB domain of peptide me	2e-42

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]} Length = 143

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

 Score =  147 bits (373), Expect = 1e-45
 Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           +  ++EE    L+  Q+ + +   TE P   EY  H EEG+Y     G PL+ S  KF+S
Sbjct: 1   MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDS 60

Query: 183 GCGWPAFYEGLPGAINCSPDPDG--LRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNS 240
            CGWP+F + +   +    D     +R E+       HLGHVF     P P   R+C+NS
Sbjct: 61  QCGWPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFNDG--PGPNGLRYCINS 118

Query: 241 ISLKFVPAN 249
            +L+FVP +
Sbjct: 119 AALRFVPKH 127

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]} Length = 144

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

 Score =  139 bits (351), Expect = 2e-42
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 4/128 (3%)

Query: 125 KSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGC 184
            S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++SGC
Sbjct: 4   PSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGC 63

Query: 185 GWPAFYEGLPGAINC---SPDPDGLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSI 241
           GWP+F   +             +  R E+   A   HLGHVF  +G       R+C+N  
Sbjct: 64  GWPSFTRPIDAKSVTEHDDFSFNMRRTEVRSRAADSHLGHVFP-DGPRDKGGLRYCINGA 122

Query: 242 SLKFVPAN 249
           SLKF+P  
Sbjct: 123 SLKFIPLE 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	100.0
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	100.0
d1nwaa_	168	Peptide methionine sulfoxide reductase {Mycobacter	99.56
d1fvga_	192	Peptide methionine sulfoxide reductase {Cow (Bos t	99.42
d1ff3a_	211	Peptide methionine sulfoxide reductase {Escherichi	99.41

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.6e-64  Score=419.94  Aligned_cols=126  Identities=37%  Similarity=0.661  Sum_probs=118.7

Q ss_pred             CCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccCCCeeeecC
Q 025343          123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPD  202 (254)
Q Consensus       123 ~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~~~v~~~~d  202 (254)
                      +.+++++|+++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+++|....|
T Consensus         1 m~~~~~e~~~~Lt~~qy~V~r~~gTE~pFtg~y~~~~~~G~Y~C~~C~~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~~D   80 (143)
T d1xm0a1           1 MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLD   80 (143)
T ss_dssp             CCCCHHHHHTTCCHHHHHHHHHCCCCCCCSCSSCSCCSSEEEEESSTTCEEEETTTCCCCCSSSCCEEESCCCSEEEECC
T ss_pred             CCCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCcCCCCCceEEeccccchhhhhhhhhccCCccceeecccccceEEEec
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             C-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCCC
Q 025343          203 P-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANS  250 (254)
Q Consensus       203 ~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~~  250 (254)
                      . .|| ||||+|++||+||||||+|  ||.|||+||||||+||+|+|++.
T Consensus        81 ~s~gm~R~Ev~C~~Cg~HLGHVF~D--Gp~ptg~RyCINs~sL~F~p~~~  128 (143)
T d1xm0a1          81 TSHGMIRTEVRSRTADSHLGHVFND--GPGPNGLRYCINSAALRFVPKHK  128 (143)
T ss_dssp             CCTTCCCCEEEESSCTTCCCEEEES--CSSSSCEEEECCGGGEEEEETTT
T ss_pred             CCCCccccceEecCCCCccCccCCC--CCCCCCcEeeeeeeeEEEEehhh
Confidence            6 566 9999999999999999986  48999999999999999999863

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=100.00  E-value=9e-63  Score=411.15  Aligned_cols=124  Identities=38%  Similarity=0.704  Sum_probs=114.8

Q ss_pred             CCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccCC-CeeeecC
Q 025343          124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPG-AINCSPD  202 (254)
Q Consensus       124 ~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~~-~v~~~~d  202 (254)
                      .++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|++ +|....|
T Consensus         3 k~s~~ewk~~Ls~~~y~Vlr~~GTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d   82 (144)
T d1l1da_           3 KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDD   82 (144)
T ss_dssp             CCCHHHHTTTSCHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSTTSEEEEEE
T ss_pred             CCCHHHHHHhCCHHHHHHHHhcCCCCCCCcccccccccCceEeccccceeeehhhcccCCccceeeccccccccccceec
Confidence            579999999999999999999999999999999999999999999999999999999999999999999976 5566767


Q ss_pred             C-CCC-eeEEEccccCCCcccccCCCCCCCC-CCceeeecccceeeeeCC
Q 025343          203 P-DGL-RIEITCAACGGHLGHVFKGEGFPTP-TDERHCVNSISLKFVPAN  249 (254)
Q Consensus       203 ~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~p-tg~RyCINs~aL~F~p~~  249 (254)
                      . .|| ||||+|++||+||||||+|  ||.| +|+||||||+||+|+|.+
T Consensus        83 ~s~gm~R~Ev~C~~Cg~HLGHVF~D--Gp~~~~~~RyCiNs~sL~F~p~~  130 (144)
T d1l1da_          83 FSFNMRRTEVRSRAADSHLGHVFPD--GPRDKGGLRYCINGASLKFIPLE  130 (144)
T ss_dssp             CCTTSCEEEEEETTTCCEEEEEESC--SCGGGTSCEEEECGGGEEEEEHH
T ss_pred             ccccccceeeEecCCCCccCcccCC--CCCCCCCCEeccceeeEEEEeHH
Confidence            5 576 9999999999999999986  4754 689999999999999974

>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=1.4e-15  Score=127.76  Aligned_cols=70  Identities=14%  Similarity=0.087  Sum_probs=61.4

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeeccCCC
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASGP  120 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaAaPk~  120 (254)
                      -.||+++||++|++|+++|+++++++++++.+.++| ||+  |+|+.+||+||+|||   +|||.++.+- +..|+.
T Consensus        91 G~QYRS~If~~~~~Q~~~a~~~i~~~~~~~~~~~~I-vTe--I~~~~~F~~AEeyHQ~Yl~Knp~~y~C~-~~~p~~  163 (168)
T d1nwaa_          91 GTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKV-VTE--VSPAGDFWEAEPEHQDYLQRYPNGYTCH-FVRPGW  163 (168)
T ss_dssp             SGGGCEEEEESSHHHHHHHHHHHHHHHHHCCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCCC-CCCTTS
T ss_pred             CccceeeEEeeccchHHHHHHHHHHHHHhhccCCce-EEE--EeccCCEEEcHHHHHHHHHhCCCCceeE-EecCCc
Confidence            468999999999999999999999998877788999 999  999999999999999   8999988653 234443

>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=2.9e-14  Score=122.08  Aligned_cols=60  Identities=13%  Similarity=0.033  Sum_probs=52.5

Q ss_pred             cccceEEEeCCHHHHHHHHHHHHHHcc--CCCCCCceeeeccceeecccceechhhcc---ccccccC
Q 025343           48 SVLSNLNFIHSPTTTRLFTNRLNSLAP--SLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRG  110 (254)
Q Consensus        48 ~~~~~aIFy~neeQk~~A~~~l~~l~~--s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~g  110 (254)
                      .||+++||++|++|+++|+++++.+++  ...+.++| +|+  |+|+++||+||+|||   +|||.+|
T Consensus       127 ~QYRSaIf~~~~~q~~~a~~~~~~~~~~~~~~~~~~I-~Te--I~~~~~Fy~AEeyHQ~Yl~knP~~Y  191 (192)
T d1fvga_         127 SQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLI-TTD--IREGQTFYYAEDYHQQYLSKDPDGY  191 (192)
T ss_dssp             GGGCEEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCC-CCE--ECSSCCCEECCGGGTTHHHHSTTCC
T ss_pred             ccccceeehhhHHHHHHHHHHHHHHHHHHHhcCCCce-EEE--eecCCCEeECHHHHHHHHHHCCCCC
Confidence            599999999999999999988877665  22456789 998  999999999999999   8999875

>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.8e-14  Score=122.95  Aligned_cols=65  Identities=11%  Similarity=0.081  Sum_probs=56.6

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccC---CCCCCceeeeccceeecccceechhhcc---ccccccCceee
Q 025343           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPS---LLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVL  114 (254)
Q Consensus        47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s---~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVl  114 (254)
                      ..||+++|||+|++|+++|++++++++++   ....++| +|+  |+|+.+||+||+|||   +|||.+|+.+.
T Consensus       131 G~QYRSaIf~~~~eQ~~~A~~~i~~~q~~~~~~~~~~~I-vTe--I~~~~~Fy~AEeyHQ~Yl~KNP~~YC~~~  201 (211)
T d1ff3a_         131 GTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHI-TTE--IANATPFYYAEDDHQQYLHKNPYGYCGIG  201 (211)
T ss_dssp             SGGGCCEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCE--ECCCCCEEECCGGGTTHHHHSCCCCCCCC
T ss_pred             CccccceeeechhHHHHHHHHHHHHHHHHHhhccCCCce-EEE--EecCCCeeeCHHHHHHHHHhCCCCCCCCC
Confidence            36999999999999999999999887753   2346789 998  999999999999999   89999887654