Citrus Sinensis ID: 025355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHccccEEccccccccccccccHHcccccccHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mrtfaskkSVKKLKRDRQLRLAEkgngvadrsgteddyvkdeskestddnftsqtlvtipsrsnvLQACTVTCGLITALGVIIRQgshvasleglpfldgstevtFDFELWHLELITGLVVLVSSCRYLLLKtwpdfaksSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGallplfgmdWRSVLAVATVFGAlhlgsgrkySFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Flexible Loop (DISEMBL)
mrtfaskksvkklkrdrqlrlaekgngvadrsgteddyvkdeskestddnftsqtlvtipsrsnVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGilwsytskssk
Low Complexity Region (SEG)
MRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Disordered region (IsUnstruct)
******************************************************TLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSY******
Disordered Region (DISOPRED)
***********************************************************PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILW*YTS****
Disordered Region (DISEMBL)
****************RQLRLAEK***************************TSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Disordered Region (DISPRO)
*********************************************************TIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
P37513	299	Uncharacterized protein Y	yes	no	0.287	0.244	0.397	0.0001

>sp|P37513|YYAK_BACSU Uncharacterized protein YyaK OS=Bacillus subtilis (strain 168) GN=yyaK PE=4 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 10/83 (12%)

Query: 167 SEELLFRGALLPLFGMDWRS----VLAVATVFGALHLGSGRKYSFAVWA-----TFVGFA 217
           +EEL FRG LL  FG   ++     L V  +FG LH  +    + AVWA     TF GF 
Sbjct: 159 AEELFFRGFLLQAFGRLTKNPLFLTLIVGGLFGVLHFANPEMNNGAVWAGIEYLTF-GFV 217

Query: 218 YGYATIVSKSIVVPMASHALNNL 240
           + Y TI + SI + + +HA NN+
Sbjct: 218 WTYYTIKTGSIEISLGAHAANNM 240

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
225425936	314	PREDICTED: uncharacterized protein LOC10	0.992	0.802	0.683	1e-101
297738318	350	unnamed protein product [Vitis vinifera]	0.992	0.72	0.683	1e-101
224100093	260	predicted protein [Populus trichocarpa]	0.976	0.953	0.681	7e-94
255547934	290	prenyl-dependent CAAX protease, putative	0.940	0.824	0.692	1e-93
449450604	304	PREDICTED: uncharacterized protein LOC10	0.952	0.796	0.645	5e-88
363808170	259	uncharacterized protein LOC100796629 [Gl	0.751	0.737	0.774	4e-86
357519485	276	hypothetical protein MTR_8g089550 [Medic	0.862	0.793	0.662	5e-83
297814844	293	CAAX amino terminal protease family prot	0.968	0.839	0.596	5e-82
334185639	313	CAAX amino terminal protease family prot	0.968	0.785	0.602	8e-82
18404792	293	CAAX amino terminal protease family prot	0.968	0.839	0.602	8e-82

>gi|225425936|ref|XP_002273043.1| PREDICTED: uncharacterized protein LOC100252714 [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/262 (68%), Positives = 209/262 (79%), Gaps = 10/262 (3%)

Query: 1   MRTFASKKSVKKLKRDRQLR----------LAEKGNGVADRSGTEDDYVKDESKESTDDN 50
           +R FAS+ SVKKL++DRQ R             + NG+ DR  +EDD V D  K S  DN
Sbjct: 51  IRAFASRNSVKKLRKDRQARKNLTLQTNKIAPNEDNGLEDRFPSEDDSVPDNKKVSPIDN 110

Query: 51  FTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFEL 110
             +Q  +TIPSR  VLQACTVT GLI ALG+IIRQ SH AS+EGLP LD S EV+F FE+
Sbjct: 111 LAAQGSITIPSRGAVLQACTVTSGLIAALGIIIRQVSHTASIEGLPILDCSMEVSFGFEM 170

Query: 111 WHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEEL 170
           WHLELI GLV++VSSCR+LLLKTWPDFA+SSEAANQQVL+SL+PLDY+VVAFLPGISEEL
Sbjct: 171 WHLELIAGLVIMVSSCRFLLLKTWPDFAESSEAANQQVLSSLQPLDYMVVAFLPGISEEL 230

Query: 171 LFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVV 230
           LFRGALLPLFG++W+SV  VA +FG LHLG GRKYSFA+WATFVG  YGYATI S +++V
Sbjct: 231 LFRGALLPLFGVNWKSVFVVAAIFGVLHLGGGRKYSFAIWATFVGVLYGYATIASSNLIV 290

Query: 231 PMASHALNNLVGGILWSYTSKS 252
           PMASHA+NNL+GGI W YTSKS
Sbjct: 291 PMASHAINNLIGGISWRYTSKS 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738318|emb|CBI27519.3| unnamed protein product [Vitis vinifera]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/262 (68%), Positives = 209/262 (79%), Gaps = 10/262 (3%)

Query: 1   MRTFASKKSVKKLKRDRQLR----------LAEKGNGVADRSGTEDDYVKDESKESTDDN 50
           +R FAS+ SVKKL++DRQ R             + NG+ DR  +EDD V D  K S  DN
Sbjct: 87  IRAFASRNSVKKLRKDRQARKNLTLQTNKIAPNEDNGLEDRFPSEDDSVPDNKKVSPIDN 146

Query: 51  FTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFEL 110
             +Q  +TIPSR  VLQACTVT GLI ALG+IIRQ SH AS+EGLP LD S EV+F FE+
Sbjct: 147 LAAQGSITIPSRGAVLQACTVTSGLIAALGIIIRQVSHTASIEGLPILDCSMEVSFGFEM 206

Query: 111 WHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEEL 170
           WHLELI GLV++VSSCR+LLLKTWPDFA+SSEAANQQVL+SL+PLDY+VVAFLPGISEEL
Sbjct: 207 WHLELIAGLVIMVSSCRFLLLKTWPDFAESSEAANQQVLSSLQPLDYMVVAFLPGISEEL 266

Query: 171 LFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVV 230
           LFRGALLPLFG++W+SV  VA +FG LHLG GRKYSFA+WATFVG  YGYATI S +++V
Sbjct: 267 LFRGALLPLFGVNWKSVFVVAAIFGVLHLGGGRKYSFAIWATFVGVLYGYATIASSNLIV 326

Query: 231 PMASHALNNLVGGILWSYTSKS 252
           PMASHA+NNL+GGI W YTSKS
Sbjct: 327 PMASHAINNLIGGISWRYTSKS 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100093|ref|XP_002311741.1| predicted protein [Populus trichocarpa] gi|222851561|gb|EEE89108.1| predicted protein [Populus trichocarpa]

 Score =  349 bits (895), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 178/261 (68%), Positives = 206/261 (78%), Gaps = 13/261 (4%)

Query: 2   RTFASKKSVKKLKRDRQLRLAEKGNGVADRS---GTEDDYVKDESKESTDDNFT---SQT 55
           RTFA +KSVKK  RD +       NG+A  S   G E++ V    K S +DN       T
Sbjct: 5   RTFARRKSVKKWTRDER-----SQNGIALESTEKGLEEERVVLSDKSSLEDNSVEPVQST 59

Query: 56  LVTIPSRSNVLQACTVTCGLITALGVI--IRQGSHVASLEGLPFLDGSTEVTFDFELWHL 113
           L  I SRS+VLQACTVT GLI AL +   +   SHVAS+EGLP LD STEV+F  E+WHL
Sbjct: 60  LNNIASRSDVLQACTVTSGLIAALELFSFVDLVSHVASMEGLPILDCSTEVSFGIEMWHL 119

Query: 114 ELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFR 173
           ELITGLV+L+SSCRYLLLKTWPDFA+S+EAANQQVLTSL+PLDYLVV+FLPG++EELLFR
Sbjct: 120 ELITGLVILISSCRYLLLKTWPDFAESTEAANQQVLTSLQPLDYLVVSFLPGVTEELLFR 179

Query: 174 GALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMA 233
           GALLPLFGMDW+SVL  AT+FG LHLG+GRKYSFA+WATFVGF YGYATIVS S+VVPMA
Sbjct: 180 GALLPLFGMDWKSVLLAATIFGVLHLGNGRKYSFAIWATFVGFVYGYATIVSSSLVVPMA 239

Query: 234 SHALNNLVGGILWSYTSKSSK 254
           SHALNNL GG+LW +TSK +K
Sbjct: 240 SHALNNLAGGLLWRHTSKPAK 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547934|ref|XP_002515024.1| prenyl-dependent CAAX protease, putative [Ricinus communis] gi|223546075|gb|EEF47578.1| prenyl-dependent CAAX protease, putative [Ricinus communis]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/247 (69%), Positives = 200/247 (80%), Gaps = 8/247 (3%)

Query: 11  KKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDD---NFTSQTLVTIPSRSNVLQ 67
           KKL+R+ QL      NG+A ++ T+  + +++   S +D   N   + L++IPSR  VLQ
Sbjct: 46  KKLRRNGQLE-----NGIALKTTTDKSFTENDDGSSLEDSTVNNIMEKLISIPSRRAVLQ 100

Query: 68  ACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCR 127
           ACTVT GLI ALG++IRQ SHVAS+EGLP LD S+EV+F  E WH EL+ GLVVL+SS R
Sbjct: 101 ACTVTSGLIAALGILIRQVSHVASVEGLPILDCSSEVSFGTETWHFELVIGLVVLISSSR 160

Query: 128 YLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSV 187
           YLLL TWPDFA+S+EAANQQVLTSL+PLDY+VV+FLPGISEELLFRGALLPLFGMDW+S 
Sbjct: 161 YLLLMTWPDFAESTEAANQQVLTSLQPLDYIVVSFLPGISEELLFRGALLPLFGMDWKSA 220

Query: 188 LAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWS 247
           LAVA VFG LHLGSGRKYSFA+WATFVG AYGYATI S SI+VPM SHALNNLVGGILW 
Sbjct: 221 LAVAAVFGVLHLGSGRKYSFAIWATFVGLAYGYATIASSSIIVPMVSHALNNLVGGILWR 280

Query: 248 YTSKSSK 254
            TSK SK
Sbjct: 281 STSKLSK 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450604|ref|XP_004143052.1| PREDICTED: uncharacterized protein LOC101207590 [Cucumis sativus]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 162/251 (64%), Positives = 197/251 (78%), Gaps = 9/251 (3%)

Query: 2   RTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPS 61
           +  A +KS ++L+R+R+         V+  S + DD  + E K ++ D+     L+ I S
Sbjct: 57  KVCAKRKSARRLERNRE--------EVSITSSSADDNAQ-EVKMNSSDSSPKNYLINISS 107

Query: 62  RSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVV 121
           RS+VLQAC +T GLI ALGVIIRQ SHVAS+EGLP +D ++EV+F FE+W L+LI GLVV
Sbjct: 108 RSSVLQACIITSGLIAALGVIIRQVSHVASIEGLPVIDCTSEVSFSFEVWQLQLIIGLVV 167

Query: 122 LVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFG 181
           L+SS R+ LLKTWPDFA+SSEAAN+QVLTSL+PLDY VVAFLPGISEELLFRGAL+PL G
Sbjct: 168 LISSSRFFLLKTWPDFAESSEAANRQVLTSLQPLDYAVVAFLPGISEELLFRGALIPLLG 227

Query: 182 MDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLV 241
            +W SV+  A +FG LHLG GRKYSFA+WATFVG AYGYATI S SIVVPMASHALNNLV
Sbjct: 228 FNWASVVVTAAIFGILHLGGGRKYSFAIWATFVGLAYGYATIESSSIVVPMASHALNNLV 287

Query: 242 GGILWSYTSKS 252
           GGILW+Y S+S
Sbjct: 288 GGILWTYESRS 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808170|ref|NP_001242738.1| uncharacterized protein LOC100796629 [Glycine max] gi|255639117|gb|ACU19858.1| unknown [Glycine max]

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 148/191 (77%), Positives = 171/191 (89%)

Query: 62  RSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVV 121
           +S VLQAC +TCGLI ALG++IRQ SHVAS+EGLP  D STEV+F FE+WHLELITGLVV
Sbjct: 62  KSAVLQACIITCGLIAALGIVIRQVSHVASVEGLPVFDCSTEVSFGFEMWHLELITGLVV 121

Query: 122 LVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFG 181
           L+SSCRYLLLKTWPDFAKSSEAANQQVL+SL+PLDY+VVAFLPGISEELLFRGA+LPL G
Sbjct: 122 LISSCRYLLLKTWPDFAKSSEAANQQVLSSLQPLDYIVVAFLPGISEELLFRGAILPLLG 181

Query: 182 MDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLV 241
           M+W S+   A +FG LHLG+GRKYSFA+WATFVG AYGYATI+S S+ VPMASHA+NNL+
Sbjct: 182 MNWNSIGIAALIFGVLHLGNGRKYSFAIWATFVGLAYGYATILSSSVAVPMASHAVNNLI 241

Query: 242 GGILWSYTSKS 252
           GG+LW YTS +
Sbjct: 242 GGLLWRYTSNT 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519485|ref|XP_003630031.1| hypothetical protein MTR_8g089550 [Medicago truncatula] gi|355524053|gb|AET04507.1| hypothetical protein MTR_8g089550 [Medicago truncatula]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 145/219 (66%), Positives = 180/219 (82%)

Query: 34  TEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLE 93
           ++D +V++++   T  N   +    IPSRS VLQAC +T  LI A G +IRQ SHVAS+E
Sbjct: 55  SDDKFVQNDNLLDTSLNPPVENANPIPSRSAVLQACILTSALIAAFGTVIRQVSHVASIE 114

Query: 94  GLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLE 153
           GLP LD STEV+F FE+WHLELITG+VVL+SS RYLLLKTWPDFA+SS+AAN+QVL+SL+
Sbjct: 115 GLPVLDCSTEVSFGFEMWHLELITGIVVLISSSRYLLLKTWPDFAESSKAANRQVLSSLQ 174

Query: 154 PLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATF 213
           PLDY+ VA LPGISEELLFRGA+LPL GM+W S+   A +FG LH+G+GR YSFA+WATF
Sbjct: 175 PLDYIAVAVLPGISEELLFRGAVLPLLGMNWTSIAVAALIFGVLHIGNGRNYSFAIWATF 234

Query: 214 VGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKS 252
           VG AYGYAT++S S+ VPMASHA+NNL+GG+LW YTSK+
Sbjct: 235 VGLAYGYATVLSSSLAVPMASHAVNNLIGGLLWRYTSKA 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814844|ref|XP_002875305.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297321143|gb|EFH51564.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 152/255 (59%), Positives = 190/255 (74%), Gaps = 9/255 (3%)

Query: 1   MRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQ----TL 56
           +R  +S+KS+KKL+R+ Q     +G  +  R+ TE++      +E+  D  TS+     +
Sbjct: 39  VRASSSRKSLKKLRRESQ-----QGKDITTRNVTEEEVSSPRFEEAQVDTLTSKDSTGAV 93

Query: 57  VTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELI 116
           V    R  VLQACTVT GL+ ALG+IIR+ SHVAS EGLP  D S  V F FE WHL LI
Sbjct: 94  VVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLPVPDCSIVVPFGFETWHLGLI 153

Query: 117 TGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGAL 176
            G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEE+LFRGAL
Sbjct: 154 AGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEEMLFRGAL 213

Query: 177 LPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHA 236
           +PL G +W  ++AV  +FG LHLGSGRKYSFAVWA+ VG  YGYA ++S S++VPMASHA
Sbjct: 214 MPLLGTNWNGIVAVGLIFGLLHLGSGRKYSFAVWASIVGIIYGYAAVLSSSLLVPMASHA 273

Query: 237 LNNLVGGILWSYTSK 251
           LNNLVGG+LW ++SK
Sbjct: 274 LNNLVGGLLWRHSSK 288

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185639|ref|NP_001189980.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|332643594|gb|AEE77115.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 153/254 (60%), Positives = 192/254 (75%), Gaps = 8/254 (3%)

Query: 1   MRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTI- 59
           +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  + + 
Sbjct: 60  VRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDSIDVF 114

Query: 60  --PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELIT 117
               R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL LI 
Sbjct: 115 VAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHLGLIA 174

Query: 118 GLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALL 177
           G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFRGAL+
Sbjct: 175 GIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFRGALM 234

Query: 178 PLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHAL 237
           PLFG +W  ++AV  +FG LHLGSGRKYSFAVWA+ VG  YGYA ++S S++VPMASHAL
Sbjct: 235 PLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAVWASIVGIVYGYAAVLSSSLIVPMASHAL 294

Query: 238 NNLVGGILWSYTSK 251
           NNLVGG+LW Y+SK
Sbjct: 295 NNLVGGLLWRYSSK 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404792|ref|NP_566788.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|18377767|gb|AAL67033.1| unknown protein [Arabidopsis thaliana] gi|20259159|gb|AAM14295.1| unknown protein [Arabidopsis thaliana] gi|332643592|gb|AEE77113.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 153/254 (60%), Positives = 192/254 (75%), Gaps = 8/254 (3%)

Query: 1   MRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTI- 59
           +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  + + 
Sbjct: 40  VRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDSIDVF 94

Query: 60  --PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELIT 117
               R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL LI 
Sbjct: 95  VAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHLGLIA 154

Query: 118 GLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALL 177
           G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFRGAL+
Sbjct: 155 GIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFRGALM 214

Query: 178 PLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHAL 237
           PLFG +W  ++AV  +FG LHLGSGRKYSFAVWA+ VG  YGYA ++S S++VPMASHAL
Sbjct: 215 PLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAVWASIVGIVYGYAAVLSSSLIVPMASHAL 274

Query: 238 NNLVGGILWSYTSK 251
           NNLVGG+LW Y+SK
Sbjct: 275 NNLVGGLLWRYSSK 288

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:505006379	322	AT3G26085 "AT3G26085" [Arabido	0.968	0.763	0.602	9e-77
UNIPROTKB|Q81SY7	187	BAS1395 "CAAX amino terminal p	0.519	0.705	0.265	1.4e-07
TIGR_CMR|BA_1506	187	BA_1506 "CAAX amino terminal p	0.519	0.705	0.265	1.4e-07
UNIPROTKB|Q81L26	236	BAS4460 "CAAX amino terminal p	0.433	0.466	0.318	0.00099
TIGR_CMR|BA_4808	236	BA_4808 "CAAX amino terminal p	0.433	0.466	0.318	0.00099

TAIR|locus:505006379 AT3G26085 "AT3G26085" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 153/254 (60%), Positives = 192/254 (75%)

Query:     1 MRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTI- 59
             +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  + + 
Sbjct:    69 VRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDSIDVF 123

Query:    60 --PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELIT 117
                 R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL LI 
Sbjct:   124 VAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHLGLIA 183

Query:   118 GLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALL 177
             G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFRGAL+
Sbjct:   184 GIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFRGALM 243

Query:   178 PLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHAL 237
             PLFG +W  ++AV  +FG LHLGSGRKYSFAVWA+ VG  YGYA ++S S++VPMASHAL
Sbjct:   244 PLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAVWASIVGIVYGYAAVLSSSLIVPMASHAL 303

Query:   238 NNLVGGILWSYTSK 251
             NNLVGG+LW Y+SK
Sbjct:   304 NNLVGGLLWRYSSK 317

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q81SY7 BAS1395 "CAAX amino terminal protease family protein" [Bacillus anthracis (taxid:1392)]

 Score = 132 (51.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 38/143 (26%), Positives = 69/143 (48%)

Query:   108 FELWHLE-----LITGLVVL-VSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVA 161
             F LW  E     +I GL+ + +    Y+ ++ +P+        N ++   +  L  LV+ 
Sbjct:    46 FNLWKWEPVSILIIGGLLAIGIVLLDYVAMRVFPESWFDDGGINDKMFRGMSVLHLLVIT 105

Query:   162 FLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYA 221
             FL G +EE LFRG +   FG+    V+A + VF  LH+    K     +  F+ F +GY 
Sbjct:   106 FLIGFAEEFLFRGVVQTHFGI----VIA-SFVFAVLHIRYITKPFLFCFVCFISFVFGYV 160

Query:   222 TIVSKSIVVPMASHALNNLVGGI 244
                + ++ + + +H L + + G+
Sbjct:   161 FEWTGNLFITIFAHFLVDFIMGL 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_1506 BA_1506 "CAAX amino terminal protease family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 132 (51.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 38/143 (26%), Positives = 69/143 (48%)

Query:   108 FELWHLE-----LITGLVVL-VSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVA 161
             F LW  E     +I GL+ + +    Y+ ++ +P+        N ++   +  L  LV+ 
Sbjct:    46 FNLWKWEPVSILIIGGLLAIGIVLLDYVAMRVFPESWFDDGGINDKMFRGMSVLHLLVIT 105

Query:   162 FLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYA 221
             FL G +EE LFRG +   FG+    V+A + VF  LH+    K     +  F+ F +GY 
Sbjct:   106 FLIGFAEEFLFRGVVQTHFGI----VIA-SFVFAVLHIRYITKPFLFCFVCFISFVFGYV 160

Query:   222 TIVSKSIVVPMASHALNNLVGGI 244
                + ++ + + +H L + + G+
Sbjct:   161 FEWTGNLFITIFAHFLVDFIMGL 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81L26 BAS4460 "CAAX amino terminal protease family protein" [Bacillus anthracis (taxid:1392)]

 Score = 107 (42.7 bits), Expect = 0.00099, P = 0.00099
 Identities = 37/116 (31%), Positives = 49/116 (42%)

Query:   128 YLLLK-TWPDFAKS-SEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWR 185
             Y+LL   + D  K  S A N  V    + L  L  A    I EEL+FRG +L  F    R
Sbjct:   118 YILLNYVFQDATKQQSSALNLDVFKQYQILLLLGFAIFTPIFEELIFRGFILRFFSE--R 175

Query:   186 SVLAVATVFGALHLGSGRKYSFAVWAT--FVGFAYGYATIVSKSIVVPMASHALNN 239
                 +A +  +   G    YSF V     F+G         +KSI+  M  H +NN
Sbjct:   176 FPFWIAAIITSFFFGIAHTYSFGVMVITFFMGLLMAILCKKTKSIIPAMLFHIINN 231

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_4808 BA_4808 "CAAX amino terminal protease family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 107 (42.7 bits), Expect = 0.00099, P = 0.00099
 Identities = 37/116 (31%), Positives = 49/116 (42%)

Query:   128 YLLLK-TWPDFAKS-SEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWR 185
             Y+LL   + D  K  S A N  V    + L  L  A    I EEL+FRG +L  F    R
Sbjct:   118 YILLNYVFQDATKQQSSALNLDVFKQYQILLLLGFAIFTPIFEELIFRGFILRFFSE--R 175

Query:   186 SVLAVATVFGALHLGSGRKYSFAVWAT--FVGFAYGYATIVSKSIVVPMASHALNN 239
                 +A +  +   G    YSF V     F+G         +KSI+  M  H +NN
Sbjct:   176 FPFWIAAIITSFFFGIAHTYSFGVMVITFFMGLLMAILCKKTKSIIPAMLFHIINN 231


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      254       254   0.00084  114 3  11 22  0.44    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.70u 0.23s 20.93t   Elapsed:  00:00:02
  Total cpu time:  20.70u 0.23s 20.93t   Elapsed:  00:00:02
  Start:  Fri May 10 05:53:47 2013   End:  Fri May 10 05:53:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035125001 SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (256 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
pfam02517	93	pfam02517, Abi, CAAX protease self-immunity	1e-16
COG1266	226	COG1266, COG1266, Predicted metal-dependent membra	3e-13
TIGR03008	222	TIGR03008, pepcterm_CAAX, CAAX prenyl protease-rel	0.001

>gnl|CDD|217080 pfam02517, Abi, CAAX protease self-immunity

 Score = 72.6 bits (179), Expect = 1e-16
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 150 TSLEPLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYS 206
             L  L  L++A L  I EELLFRG LLP          ++L  + +FG LHL +G    
Sbjct: 1   PLLLLLLLLLLALLAPIGEELLFRGFLLPRLRKRFWPLLAILISSLLFGLLHLPNG--PL 58

Query: 207 FAVWATFVGFAYGYATIVSKSIVVPMASHALNNLV 241
             + A  +G   G+  + + S+   +  HALNNL+
Sbjct: 59  AFLSAFLLGLVLGWLYLRTGSLWAAILLHALNNLL 93

Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity. Length = 93

>gnl|CDD|224185 COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 157 YLVVAFLPGISEELLFRGALLPLFGMDWRSVLAV---ATVFGALHLGSGRKYSFAVWATF 213
           +LV+  L  ++EELLFRG LL      +  +LA+   + +F  LHL +G    + +    
Sbjct: 126 FLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFI 185

Query: 214 VGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSS 253
            G   G   + + S+ VP+  HAL NL+  +  S     +
Sbjct: 186 AGLILGLLYLRTGSLWVPILLHALINLLALLFLSLLLLLA 225

Length = 226

>gnl|CDD|163100 TIGR03008, pepcterm_CAAX, CAAX prenyl protease-related protein

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query: 166 ISEELLFRGALL-----------PLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFV 214
           + EEL +R  LL           P     W S LAV  +FG  H          V     
Sbjct: 129 VMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEH-------HLIVAGLIA 181

Query: 215 GFAYGYATIVSKSIVVPMASHALNNLVGGI 244
           G AY    + + SI+  + +HA+ N + G+
Sbjct: 182 GLAYNLLLLRTGSIMACILAHAVTNGLLGL 211

The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
TIGR03008	222	pepcterm_CAAX CAAX prenyl protease-related protein	99.76
PF02517	91	Abi: CAAX protease self-immunity; InterPro: IPR003	99.73
COG1266	226	Predicted metal-dependent membrane protease [Gener	99.68
KOG4130	291	consensus Prenyl protein protease [Posttranslation	98.93
COG4449	827	Predicted protease of the Abi (CAAX) family [Gener	97.78
PF10086	223	DUF2324: Putative membrane peptidase family (DUF23	89.23
PF13367	191	PrsW-protease: Protease prsW family	81.9

>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein

Probab=99.76  E-value=3.8e-17  Score=142.22  Aligned_cols=86  Identities=29%  Similarity=0.389  Sum_probs=74.1

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcC
Q 025355          158 LVVAFLPGISEELLFRGALLPLFGM-----------DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSK  226 (254)
Q Consensus       158 l~~~i~~~i~EEllFRG~L~~~l~~-----------~~~ailiSsllF~l~H~~~~~~~~~~l~~~~~Gli~g~~y~~tg  226 (254)
                      +..+++.|+.||++|||++++.+.+           .|.++++||++||+.|..       .+.+++.|+++|++|.|||
T Consensus       121 ~~~~l~vpi~EElfFRG~l~~~l~~~~f~~~~~~~~~~~a~lisSllFal~H~~-------~~~~~l~Gli~~~l~~~tg  193 (222)
T TIGR03008       121 AGATLVVPVMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEHHL-------IVAGLIAGLAYNLLLLRTG  193 (222)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhC
Confidence            4446888999999999999999843           477999999999999974       3457788999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHccC
Q 025355          227 SIVVPMASHALNNLVGGILWSYTS  250 (254)
Q Consensus       227 sL~~~I~~H~~~N~~~~ll~~~~~  250 (254)
                      |++.+|++|+++|.+..+....++
T Consensus       194 sL~~~I~~H~~~N~ll~~~vl~~~  217 (222)
T TIGR03008       194 SIMACILAHAVTNGLLGLWVLLTG  217 (222)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999877765554

The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.

>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases)

Probab=99.73  E-value=2.5e-17  Score=123.33  Aligned_cols=84  Identities=31%  Similarity=0.551  Sum_probs=74.5

Q ss_pred             chHHHHHHhhHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 025355          155 LDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVP  231 (254)
Q Consensus       155 ~~~l~~~i~~~i~EEllFRG~L~~~l~~---~~~ailiSsllF~l~H~~~~~~~~~~l~~~~~Gli~g~~y~~tgsL~~~  231 (254)
                      ...+...+.+|+.||++|||++++.+.+   ++.++++|+++|++.|...  .+. ++..++.|++++++|.||||+|++
T Consensus         5 ~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a~~is~~~f~~~H~~~--~~~-~~~~~~~g~~~~~~~~~t~sl~~~   81 (91)
T PF02517_consen    5 IFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFAILISSLLFALWHLPN--GPQ-FIYAFLFGLLFGYLYLRTGSLWAA   81 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh--hHH-HHHHHHHHHHHHHHHHHcCChHHH
Confidence            3456667899999999999999999866   4789999999999999986  344 788999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 025355          232 MASHALNNLV  241 (254)
Q Consensus       232 I~~H~~~N~~  241 (254)
                      +++|+++|.+
T Consensus        82 i~~H~~~n~~   91 (91)
T PF02517_consen   82 IIAHALWNLV   91 (91)
T ss_pred             HHHHHHHHcC
Confidence            9999999973

The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane

>COG1266 Predicted metal-dependent membrane protease [General function prediction only]

Probab=99.68  E-value=1.7e-15  Score=129.67  Aligned_cols=87  Identities=32%  Similarity=0.466  Sum_probs=76.8

Q ss_pred             cchHHHHHHhhHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 025355          154 PLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVV  230 (254)
Q Consensus       154 ~~~~l~~~i~~~i~EEllFRG~L~~~l~~---~~~ailiSsllF~l~H~~~~~~~~~~l~~~~~Gli~g~~y~~tgsL~~  230 (254)
                      ...++...+.+|+.||++|||++++.+.+   .+.++++||++||+.|..+...+..++.++.+|++++++|.||||++.
T Consensus       123 ~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l~~  202 (226)
T COG1266         123 LLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWV  202 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            34456667889999999999999999876   467999999999999998753257788899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 025355          231 PMASHALNNL  240 (254)
Q Consensus       231 ~I~~H~~~N~  240 (254)
                      ++..|+++|.
T Consensus       203 ~i~~H~~~N~  212 (226)
T COG1266         203 PILLHALINL  212 (226)
T ss_pred             HHHHHHHHHH
Confidence            9999999996

>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=4.1e-08  Score=85.45  Aligned_cols=85  Identities=21%  Similarity=0.294  Sum_probs=70.8

Q ss_pred             HHhhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHhhcCcc----------------hHHHHHHHHHHHHHHHH
Q 025355          161 AFLPGISEELLFRGALLPLFGM----DWRSVLAVATVFGALHLGSGR----------------KYSFAVWATFVGFAYGY  220 (254)
Q Consensus       161 ~i~~~i~EEllFRG~L~~~l~~----~~~ailiSsllF~l~H~~~~~----------------~~~~~l~~~~~Gli~g~  220 (254)
                      -+++|+.||++||.++++...+    ...++...-++||..|.+..-                .-.++.|+.+.|..-+.
T Consensus       135 ~iiaPLtEElvfracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~yTaf  214 (291)
T KOG4130|consen  135 FIIAPLTEELVFRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGGYTAF  214 (291)
T ss_pred             hhhccchHHHHHHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3788999999999999998754    456789999999999976310                22457788899999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHH
Q 025355          221 ATIVSKSIVVPMASHALNNLVGGIL  245 (254)
Q Consensus       221 ~y~~tgsL~~~I~~H~~~N~~~~ll  245 (254)
                      ++.|||++|.+|++|+..|...+--
T Consensus       215 lF~rTghl~~~iLvHAfCN~MGfP~  239 (291)
T KOG4130|consen  215 LFVRTGHLWCPILVHAFCNIMGFPN  239 (291)
T ss_pred             HhhhcCCchHHHHHHHHHhhcCChh
Confidence            9999999999999999999876543

>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]

Probab=97.78  E-value=1.2e-05  Score=76.44  Aligned_cols=82  Identities=26%  Similarity=0.329  Sum_probs=63.7

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhh---hHHHHHHHHH--HHHHHhhcCcc-----------hHHHHHHHHHHHHHHHH
Q 025355          157 YLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVAT--VFGALHLGSGR-----------KYSFAVWATFVGFAYGY  220 (254)
Q Consensus       157 ~l~~~i~~~i~EEllFRG~L~~~l~~---~~~ailiSsl--lF~l~H~~~~~-----------~~~~~l~~~~~Gli~g~  220 (254)
                      ++-+.+.+++.||++||..+.+.=+.   +|..+-....  +|.++|.-+..           .+.+++.+.++|+-|+.
T Consensus       712 iL~vIl~PAl~EElvFRvvLlP~P~E~r~~W~tl~a~~~l~LfvLyHplnA~T~y~rg~PvFf~PiFL~ltglLGL~Ctv  791 (827)
T COG4449         712 ILTVILIPALGEELVFRVVLLPGPGEGRRPWVTLGAATGLVLFVLYHPLNALTFYPRGAPVFFRPIFLLLTGLLGLGCTV  791 (827)
T ss_pred             hhhheehhhccccceeEEEecCCCCccccchHhHHHHHHHHHHHHhhhhhhhhccccCCcceeccHHHHHHHHHhhhhhh
Confidence            34556789999999999999987533   6765544444  89999964321           33566778899999999


Q ss_pred             HHHhcCCcHHHHHHHHHH
Q 025355          221 ATIVSKSIVVPMASHALN  238 (254)
Q Consensus       221 ~y~~tgsL~~~I~~H~~~  238 (254)
                      .|..|+|+|+.+++|.+.
T Consensus       792 ty~vT~SlW~iV~lHW~v  809 (827)
T COG4449         792 TYRVTGSLWPIVLLHWAV  809 (827)
T ss_pred             hHHhccchHHHHHHHHHH
Confidence            999999999999999764

>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.23  E-value=8.6  Score=33.64  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=16.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHHH
Q 025355          227 SIVVPMASHALNNLVGGILWS  247 (254)
Q Consensus       227 sL~~~I~~H~~~N~~~~ll~~  247 (254)
                      -+..+|++|++.|..+.+...
T Consensus       190 ~l~~AIllHaliD~~aal~q~  210 (223)
T PF10086_consen  190 YLVLAILLHALIDFPAALYQA  210 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455789999999998766643

However, they are predicted to be integral membrane proteins (with several transmembrane segments).

>PF13367 PrsW-protease: Protease prsW family

Probab=81.90  E-value=29  Score=28.99  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHH
Q 025355          208 AVWATFVGFAYGYATIVS---------KSIVVPMASHALNNLVGGI  244 (254)
Q Consensus       208 ~l~~~~~Gli~g~~y~~t---------gsL~~~I~~H~~~N~~~~l  244 (254)
                      ..+..++|..+++...+.         ..+..++..|++||.....
T Consensus       129 ~~~t~i~g~~l~~~~~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~~  174 (191)
T PF13367_consen  129 ALFTAIFGYGLGLAKRRRKRGFRLALLLGFLLAVLLHGLWNFPLSL  174 (191)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            445666777777766332         2467889999999998766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 56/234 (23%)

Query: 35  EDDYVKD----ESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVA 90
           ED +V +    + ++      + + +       +++ +     G +     ++ +   + 
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEI------DHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 91  SLEGLPFLDGSTEVTFDF--ELWHLELI--TGLVVLVSSCRYLLLKTWPDFAKSS----E 142
                 F++    + + F       E    + +  +    R  L      FAK +    +
Sbjct: 80  QK----FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 143 AANQ--QVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLG 200
              +  Q L  L P   +++  + G               G   ++ +A+      L   
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLG--------------SG---KTWVALDVC---LSYK 175

Query: 201 SGRKYSFAV-WATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSS 253
              K  F + W              S   V+ M    L  L+  I  ++TS+S 
Sbjct: 176 VQCKMDFKIFWLNL-----KNCN--SPETVLEM----LQKLLYQIDPNWTSRSD 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00