Citrus Sinensis ID: 025398

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKRSYQKDLANQEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSAKSQNGPARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAKKRVEEREKQLLGLYHSQ
Secondary Structure (PSIPRED)
ccccHHcccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccEEEcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccHEEEEEEccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccccccccEEEcccccEEEcccccEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccHHHHcHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MTEYWVSQGNKWCDFCKiyisnnpssirnhdlgqrHKENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKRSYQKDLANqearnsnavalndhekwdydgtsgyyynesnglyydpksgfyysdaignwvtQEEAYAaipaslgskhrptmkhpfpafgggsivenkdsaksqngpargpvvssslnpmrsvkgapsslavgkrkrednKLKKMAKPVSKEEAAAIKAREAAKKRVEEREKQLLGLYHSQ
Flexible Loop (DISEMBL)
MTEYWVSQGNKWCDFCKIYISNNPssirnhdlgqrHKENVQKKLADMRKEnaakekehketARALEQIEAKAKRSYQKDLANQEARnsnavalndhekwdyDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSaksqngpargpvvssslnpmrsvkgapsslavgkrkrednklkkmakpvskeeaAAIKAREAAKKRVEEREKQllglyhsq
Low Complexity Region (SEG)
MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRkenaakekehketaraLEQIEAKAKRSYQKDLANQEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSAKSQNGPARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSkeeaaaikareaakkrveerekQLLGLYHSQ
Disordered region (IsUnstruct)
***YWVSQGNKWCDFCKIYIS**********************************************************************ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAYAAIP**************************************************************************************************************
Disordered Region (DISOPRED)
*TEYWVSQGNKWCDFCKIYISNNPSSIR******RH*ENVQ*************************************************************************LYYDPKSGFYYSDAIGNWVTQ****************************************************************************************************************GLY***
Disordered Region (DISEMBL)
MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA****************ARALEQIEA***************RNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENK******************LNPMR************************************************REKQLLGLYHSQ
Disordered Region (DISPRO)
*TEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKRSYQKDLANQE*****AVALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAY*************************************************************************************************KR*EEREKQL*GLYH**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKRSYQKDLANQEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSAKSQNGPARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAKKRVEEREKQLLGLYHSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q5F457	398	WW domain-binding protein	yes	no	0.316	0.201	0.412	1e-11
O75554	376	WW domain-binding protein	yes	no	0.316	0.212	0.387	7e-11
Q5HZF2	374	WW domain-binding protein	yes	no	0.316	0.213	0.387	9e-11
Q61048	376	WW domain-binding protein	yes	no	0.316	0.212	0.375	1e-10
P52756	815	RNA-binding protein 5 OS=	no	no	0.229	0.071	0.396	9e-06
Q91YE7	815	RNA-binding protein 5 OS=	no	no	0.237	0.073	0.384	3e-05
Q1RMU5	815	RNA-binding protein 5 OS=	no	no	0.169	0.052	0.458	7e-05
B2GV05	815	RNA-binding protein 5 OS=	no	no	0.229	0.071	0.380	7e-05
A4IGK4	838	RNA-binding protein 5 OS=	no	no	0.205	0.062	0.412	0.0002
A0JMV4	833	RNA-binding protein 5-A O	N/A	no	0.205	0.062	0.396	0.0003

>sp|Q5F457|WBP4_CHICK WW domain-binding protein 4 OS=Gallus gallus GN=WBP4 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 55/80 (68%)

Query: 1  MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
          M +YW SQ  K+CD+CK +I++N  SI  H+ G+ HKENV K+++++RK++  K KE + 
Sbjct: 1  MADYWKSQPKKFCDYCKCWIADNRPSIDFHERGKNHKENVAKRISEIRKKSMEKAKEEEN 60

Query: 61 TARALEQIEAKAKRSYQKDL 80
           ++    +E  A ++YQ+DL
Sbjct: 61 MSKEFAAMEEAAMKAYQEDL 80

A spliceosome-associated protein; may play a role in cross-intron bridging of U1 and U2 snRNPs in the mammalian A complex.
Gallus gallus (taxid: 9031)

>sp|O75554|WBP4_HUMAN WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 57/80 (71%)

Query: 1  MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
          M +YW SQ  K+CD+CK +I++N  S+  H+ G+ HKENV K+++++++++  K KE ++
Sbjct: 1  MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK 60

Query: 61 TARALEQIEAKAKRSYQKDL 80
           ++    +EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80

Promotes pre-mRNA splicing. A spliceosome-associated protein; may play a role in cross-intron bridging of U1 and U2 snRNPs in the mammalian A complex.

Homo sapiens (taxid: 9606)

>sp|Q5HZF2|WBP4_RAT WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 57/80 (71%)

Query: 1  MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
          M +YW SQ  K+CD+CK +I++N  S+  H+ G+ HKENV +K++++++++  K KE ++
Sbjct: 1  MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARKISEIKQKSLDKAKEEEK 60

Query: 61 TARALEQIEAKAKRSYQKDL 80
           ++    +EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80

Promotes pre-mRNA splicing. A spliceosome-associated protein; may play a role in cross-intron bridging of U1 and U2 snRNPs in the mammalian A complex.

Rattus norvegicus (taxid: 10116)

>sp|Q61048|WBP4_MOUSE WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=4

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 57/80 (71%)

Query: 1  MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
          M +YW SQ  K+CD+CK +I++N  S+  H+ G+ HKENV ++++++++++  K KE ++
Sbjct: 1  MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARRISEIKQKSLDKAKEEEK 60

Query: 61 TARALEQIEAKAKRSYQKDL 80
           ++    +EA A ++YQ+DL
Sbjct: 61 ASKEFAAMEAAALKAYQEDL 80

Promotes pre-mRNA splicing. A spliceosome-associated protein; may play a role in cross-intron bridging of U1 and U2 snRNPs in the mammalian A complex.

Mus musculus (taxid: 10090)

>sp|P52756|RBM5_HUMAN RNA-binding protein 5 OS=Homo sapiens GN=RBM5 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 92  ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
           A+ D   + YD +SGYYY+ + GLYYDP S +YY+        W  ++E Y  +PA+  S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAESS 512

Query: 149 KHR 151
            H+
Sbjct: 513 SHQ 515

Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron. May both positively and negatively regulate aopotosis by regulating the alternative splicing of several genes involved in this process, including FAS and CASP2/caspase-2. In the case of FAS, promotes exclusion of exon 6 thereby producing a soluble form of FAS that inhibits apoptosis. In the case of CASP2/caspase-2, promotes exclusion of exon 9 thereby producing a catalytically active form of CASP2/Caspase-2 that induces apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q91YE7|RBM5_MOUSE RNA-binding protein 5 OS=Mus musculus GN=Rbm5 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 92  ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
           A+ D   + YD +SGYYY+ + GLYYDP S +YY+        W  ++E Y  +PA+  S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAEAS 512

Query: 149 KHRPT 153
            ++ T
Sbjct: 513 SNQQT 517

Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron. May both positively and negatively regulate aopotosis by regulating the alternative splicing of several genes involved in this process, including FAS and CASP2/caspase-2. In the case of FAS, promotes production of a soluble form of FAS that inhibits apoptosis. In the case of CASP2/caspase-2, promotes production of a catalytically active form of CASP2/Caspase-2 that induces apoptosis.

Mus musculus (taxid: 10090)

>sp|Q1RMU5|RBM5_BOVIN RNA-binding protein 5 OS=Bos taurus GN=RBM5 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 5/48 (10%)

Query: 92  ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQEEAY 139
           A+ D   + YD +SGYYY+ + GLYYDP S +YY     N +TQ+  Y
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYY-----NSLTQQYLY 497

Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron. May both positively and negatively regulate aopotosis by regulating the alternative splicing of several genes involved in this process, including FAS and CASP2/caspase-2. In the case of FAS, promotes production of a soluble form of FAS that inhibits apoptosis. In the case of CASP2/caspase-2, promotes production of a catalytically active form of CASP2/Caspase-2 that induces apoptosis.

Bos taurus (taxid: 9913)

>sp|B2GV05|RBM5_RAT RNA-binding protein 5 OS=Rattus norvegicus GN=Rbm5 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 92  ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLGS 148
           A+ D   + YD +SGYYY+ + GLYYDP S +YY+        W  ++E Y  +PA+  S
Sbjct: 455 AVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETY--VPAAESS 512

Query: 149 KHR 151
            ++
Sbjct: 513 SNQ 515

Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron. May both positively and negatively regulate aopotosis by regulating the alternative splicing of several genes involved in this process, including FAS and CASP2/caspase-2. In the case of FAS, promotes production of a soluble form of FAS that inhibits apoptosis. In the case of CASP2/caspase-2, promotes production of a catalytically active form of CASP2/Caspase-2 that induces apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|A4IGK4|RBM5_XENTR RNA-binding protein 5 OS=Xenopus tropicalis GN=rbm5 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 11/63 (17%)

Query: 83  QEARNSNAV------ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQE 136
           +EA   NAV      ++ D   + YD +SGYYY+   GLYYDP S +YY     N +TQ+
Sbjct: 456 EEAAPPNAVIPGVKYSVPDTSTYQYDESSGYYYDPQTGLYYDPNSQYYY-----NSLTQQ 510

Query: 137 EAY 139
             Y
Sbjct: 511 YLY 513

Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron.

Xenopus tropicalis (taxid: 8364)

>sp|A0JMV4|RBM5A_XENLA RNA-binding protein 5-A OS=Xenopus laevis GN=rbm5-a PE=2 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 11/63 (17%)

Query: 83  QEARNSNAV------ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQE 136
           +EA   NA+      ++ D   + YD +SGYYY+   GLYYDP S +YY     N +TQ+
Sbjct: 455 EEAAAPNAIVPGLKYSVPDTSTYQYDESSGYYYDPQTGLYYDPNSQYYY-----NSLTQQ 509

Query: 137 EAY 139
             Y
Sbjct: 510 YLY 512

Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
118489270	250	unknown [Populus trichocarpa x Populus d	0.968	0.98	0.694	1e-91
255561701	250	nucleic acid binding protein, putative [	0.964	0.976	0.692	3e-90
449438428	254	PREDICTED: uncharacterized protein LOC10	0.968	0.964	0.664	7e-88
225428731	257	PREDICTED: uncharacterized protein LOC10	0.984	0.968	0.689	2e-84
356496424	247	PREDICTED: uncharacterized protein LOC10	0.956	0.979	0.644	6e-81
388495468	236	unknown [Lotus japonicus]	0.913	0.978	0.637	8e-81
224103545	218	predicted protein [Populus trichocarpa]	0.841	0.977	0.694	3e-79
356500315	246	PREDICTED: uncharacterized protein LOC10	0.952	0.979	0.620	3e-78
356500317	249	PREDICTED: uncharacterized protein LOC10	0.964	0.979	0.616	7e-77
115467074	243	Os06g0215200 [Oryza sativa Japonica Grou	0.956	0.995	0.575	7e-75

>gi|118489270|gb|ABK96440.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/255 (69%), Positives = 202/255 (79%), Gaps = 10/255 (3%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKI+ISNNP+SIRNH+LGQRHK+NV KKL  MRK+N AKEK+ KE
Sbjct: 1   MTEYWVSQGNKWCDFCKIFISNNPTSIRNHELGQRHKDNVAKKLDSMRKDNIAKEKQQKE 60

Query: 61  TARALEQIEAKAKRSYQKDLAN-QEARNSNAVALND--HEKWDYDGTSGYYYNESNGLYY 117
            ARALEQIEAKA RSYQKD+AN +EA +  A+ + +   EKWDYD TSGYYYN+SNGL+Y
Sbjct: 61  AARALEQIEAKANRSYQKDVANLKEASSLRALDIQEDGQEKWDYDSTSGYYYNQSNGLHY 120

Query: 118 DPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKHR-PTMKHPFPAFGGGSIVENKDSAKSQ 176
           DP SGFYYSDAIG WVTQEEAYAA+  S GS+++  + K P PA    S+ ENK +A  Q
Sbjct: 121 DPNSGFYYSDAIGKWVTQEEAYAAVQISSGSRNKESSFKKPLPASAVSSVKENKVAA--Q 178

Query: 177 NGPARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAK 236
           +GP  GPVVS+SLNP RSVKGAPS  AV KRKR D K     K VS EE AA+KAREAA+
Sbjct: 179 SGPPPGPVVSASLNPRRSVKGAPSKFAVNKRKRPDEK----PKAVSVEEKAALKAREAAR 234

Query: 237 KRVEEREKQLLGLYH 251
           KRVEEREK LLGLY 
Sbjct: 235 KRVEEREKSLLGLYQ 249

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561701|ref|XP_002521860.1| nucleic acid binding protein, putative [Ricinus communis] gi|223538898|gb|EEF40496.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 176/254 (69%), Positives = 200/254 (78%), Gaps = 10/254 (3%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKIYISNNPSSIRNH+LGQRHKE V K+LA MRKENAAKEK+ KE
Sbjct: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHELGQRHKEAVSKRLASMRKENAAKEKKQKE 60

Query: 61  TARALEQIEAKAKRSYQKDLAN-QEARNSNAVALND--HEKWDYDGTSGYYYNESNGLYY 117
            A AL+QIEAKA RSYQKD+AN +EA   +A+ L +   E+WD+D TSGYYYN +NGL+Y
Sbjct: 61  AAHALQQIEAKANRSYQKDVANFEEASKVHALDLQEDAEEEWDHDKTSGYYYNRNNGLHY 120

Query: 118 DPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKHR-PTMKHPFPAFGGGSIVENKDSAKSQ 176
           DPKSGFYYSDAIG WVTQEEAYA+I  S  SKH+   +K PF    GG I E   +  +Q
Sbjct: 121 DPKSGFYYSDAIGKWVTQEEAYASIKISSDSKHKGSILKKPFLISAGGPIKET--TTATQ 178

Query: 177 NGPARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAK 236
           NGP  GPVVS+ LNPMRSVKGA S++AV KRKR+D       K +S EE AA+KAREAAK
Sbjct: 179 NGPPPGPVVSAPLNPMRSVKGATSAVAVNKRKRQD----AHPKVISNEEKAALKAREAAK 234

Query: 237 KRVEEREKQLLGLY 250
           KRVEEREK LLGLY
Sbjct: 235 KRVEEREKNLLGLY 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438428|ref|XP_004136990.1| PREDICTED: uncharacterized protein LOC101207712 [Cucumis sativus]

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 170/256 (66%), Positives = 203/256 (79%), Gaps = 11/256 (4%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKI+ISNNPS+IRNH+LGQRHK+NV KKLA+MRKENAAK+KE KE
Sbjct: 1   MTEYWVSQGNKWCDFCKIFISNNPSTIRNHELGQRHKDNVAKKLANMRKENAAKDKEQKE 60

Query: 61  TARALEQIEAKAKRSYQKDLAN-QEARNSNAVALN----DHEKWDYDGTSGYYYNESNGL 115
             RA+EQIEAKA RSYQKD+AN +EAR+S+A+ ++      EKW+ D TSGYYYNESNG 
Sbjct: 61  AVRAIEQIEAKANRSYQKDIANFREARDSHALPVDVQETGDEKWELDSTSGYYYNESNGF 120

Query: 116 YYDPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKH-RPTMKHPFPAFGGGSIVENKDSAK 174
           YYD  SGFYYSDAIG WVTQEEA+++    L SKH +P +  P  A    + +++K+  K
Sbjct: 121 YYDSNSGFYYSDAIGKWVTQEEAHSSPQFFLDSKHKKPILAKPSSA-SASTAIKDKNVDK 179

Query: 175 SQNGPARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREA 234
            + GP  G VVS+SLNP RS+KGAPSS+AVGKRKR D K     K +S+EE AA+KAREA
Sbjct: 180 GEGGPPPGLVVSASLNPKRSIKGAPSSIAVGKRKRPDEK----QKAISEEEKAALKAREA 235

Query: 235 AKKRVEEREKQLLGLY 250
           AKKRVE+REK LLGLY
Sbjct: 236 AKKRVEKREKPLLGLY 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428731|ref|XP_002285013.1| PREDICTED: uncharacterized protein LOC100246948 isoform 1 [Vitis vinifera] gi|359475212|ref|XP_003631615.1| PREDICTED: uncharacterized protein LOC100246948 isoform 2 [Vitis vinifera] gi|147811057|emb|CAN63484.1| hypothetical protein VITISV_017085 [Vitis vinifera] gi|297741317|emb|CBI32448.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/261 (68%), Positives = 203/261 (77%), Gaps = 12/261 (4%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKIYI+NNPSSIRNH+LGQRHK++V K+LA MRKENAAKEKE KE
Sbjct: 1   MTEYWVSQGNKWCDFCKIYIANNPSSIRNHELGQRHKDSVAKRLASMRKENAAKEKEQKE 60

Query: 61  TARALEQIEAKAKRSYQKDLAN-QEARNSNAVALNDHE------KWDYDGTSGYYYNESN 113
            A ALEQIE+KAKRSYQKD+A  +EAR SNA AL   +       W++D  SGYYY+ SN
Sbjct: 61  AAHALEQIESKAKRSYQKDIATFREARESNANALAQEDDSSTANDWEHDSASGYYYSRSN 120

Query: 114 GLYYDPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKHR-PTMKHPFPAFGGGSIVENKDS 172
           G+YYDP SGFYYSDAIG WVTQEEA+A   AS  SK + P +K PF    G    ENK +
Sbjct: 121 GIYYDPNSGFYYSDAIGKWVTQEEAFATSQASSDSKQKGPVLKSPFSVSEGTQDRENKSA 180

Query: 173 AKSQNGPARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAR 232
           AK QNGP  GPVVS+SLNP RS K APSS+A+ KRKR+D K     K VSKEEAAA+KAR
Sbjct: 181 AKHQNGPPPGPVVSASLNPRRSSKCAPSSVAINKRKRQDEK----PKAVSKEEAAALKAR 236

Query: 233 EAAKKRVEEREKQLLGLYHSQ 253
           EAAKKRVEEREK LLGLY S+
Sbjct: 237 EAAKKRVEEREKSLLGLYGSR 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496424|ref|XP_003517068.1| PREDICTED: uncharacterized protein LOC100804274 [Glycine max] gi|356534661|ref|XP_003535871.1| PREDICTED: uncharacterized protein LOC100776500 [Glycine max]

 Score =  306 bits (784), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 163/253 (64%), Positives = 195/253 (77%), Gaps = 11/253 (4%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKIYISNNP SIRNH+LGQRHK+NV K+LA MRKEN AKEKE KE
Sbjct: 1   MTEYWVSQGNKWCDFCKIYISNNPGSIRNHELGQRHKDNVSKRLAAMRKENIAKEKEQKE 60

Query: 61  TARALEQIEAKAKRSYQKD-LANQEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDP 119
           TARA+EQIEAKA+RSYQKD +  +E R S+ +   D ++W++D ++GYYY+++NG YYD 
Sbjct: 61  TARAIEQIEAKAQRSYQKDKVKFEETRESHEL---DDQEWEFDSSTGYYYHKTNGFYYDQ 117

Query: 120 KSGFYYSDAIGNWVTQEEAYAAIPASLGSKHR-PTMKHPFPAFGGGSIVENKDSAKSQNG 178
           KSGFYYSDAIG WVTQEEAYA+   +  + H  PT K         S  ENK + K  NG
Sbjct: 118 KSGFYYSDAIGKWVTQEEAYASPHFTSNAGHNGPTAKKSLSTSQSKSD-ENKGN-KFNNG 175

Query: 179 PARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAKKR 238
            + GPVV++SLNP R+VK APSSLAVGKRKR   K    +K +S EE AA+KAREAA+KR
Sbjct: 176 SSPGPVVTTSLNPKRNVKAAPSSLAVGKRKRPGEK----SKVISDEEKAALKAREAARKR 231

Query: 239 VEEREKQLLGLYH 251
           V+EREK LLGLY+
Sbjct: 232 VQEREKPLLGLYN 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495468|gb|AFK35800.1| unknown [Lotus japonicus]

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 160/251 (63%), Positives = 190/251 (75%), Gaps = 20/251 (7%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKIYISNNPSSIRNH+LG RHK+NV K+LA MRKEN AKEKEHKE
Sbjct: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHELGTRHKDNVAKRLAAMRKENTAKEKEHKE 60

Query: 61  TARALEQIEAKAKRSYQKDLAN-QEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDP 119
           TA+ALEQIEAKA+RSYQKD A  +EAR  + +   D E+WD++ +SGYYY+++NG YYDP
Sbjct: 61  TAQALEQIEAKAQRSYQKDKAKLEEAREWHEL---DAEEWDFESSSGYYYHKTNGFYYDP 117

Query: 120 KSGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSAKSQNGP 179
           KSGFYYSDAIG WVTQEEAYA+   +  +K               S  ++    K  NGP
Sbjct: 118 KSGFYYSDAIGKWVTQEEAYASPHFASTTKK------------ASSTSQSNKGNKPHNGP 165

Query: 180 ARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAKKRV 239
             G VV++SLNP R+VK APSSL++GKRKR   K     K VS+EE +A+KAREAA+KRV
Sbjct: 166 LPGRVVTTSLNPTRNVKAAPSSLSLGKRKRPGEK----PKVVSEEEKSALKAREAARKRV 221

Query: 240 EEREKQLLGLY 250
           +EREK LLGLY
Sbjct: 222 QEREKSLLGLY 232

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103545|ref|XP_002313098.1| predicted protein [Populus trichocarpa] gi|222849506|gb|EEE87053.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 152/219 (69%), Positives = 175/219 (79%), Gaps = 6/219 (2%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKI+ISNNP+SIRNH+LGQRHK+NV KKL  MRK+N AKEK+ KE
Sbjct: 1   MTEYWVSQGNKWCDFCKIFISNNPTSIRNHELGQRHKDNVAKKLDSMRKDNIAKEKQQKE 60

Query: 61  TARALEQIEAKAKRSYQKDLAN-QEARNSNAVALND--HEKWDYDGTSGYYYNESNGLYY 117
            ARALEQIEAKA RSYQKD+AN +EA +  A+ + +   EKWDYD TSGYYYN+SNGL+Y
Sbjct: 61  AARALEQIEAKANRSYQKDVANLKEASSLRALDIQEDGQEKWDYDSTSGYYYNQSNGLHY 120

Query: 118 DPKSGFYYSDAIGNWVTQEEAYAAIPASLGSKHR-PTMKHPFPAFGGGSIVENKDSAKSQ 176
           DP SGFYYSDAIG WVTQEEAYAA+  S GS+++  + K P PA    S+ ENK +A  Q
Sbjct: 121 DPNSGFYYSDAIGKWVTQEEAYAAVRISSGSRNKESSFKKPLPASAVSSVKENKVAA--Q 178

Query: 177 NGPARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLK 215
           +GP  GPVVS+SLNP RSVKGAPS  AV KRKR D K K
Sbjct: 179 SGPPPGPVVSASLNPRRSVKGAPSKFAVNKRKRPDEKPK 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500315|ref|XP_003518978.1| PREDICTED: uncharacterized protein LOC100779677 isoform 1 [Glycine max]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 157/253 (62%), Positives = 192/253 (75%), Gaps = 12/253 (4%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKIYISNNP SIRNH+LGQRHK+NV K+LA MRK+N AKEKE KE
Sbjct: 1   MTEYWVSQGNKWCDFCKIYISNNPGSIRNHELGQRHKDNVSKRLAAMRKDNIAKEKEQKE 60

Query: 61  TARALEQIEAKAKRSYQKDLAN-QEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDP 119
           TARA+EQIEAKA+RSYQKD A  +E R S+ +   D ++W++D +SGYYY+++NG YYD 
Sbjct: 61  TARAIEQIEAKAQRSYQKDKAKFEETRESHEL---DDQEWEFDSSSGYYYHKTNGFYYDQ 117

Query: 120 KSGFYYSDAIGNWVTQEEAYAAIPASLGSKHR-PTMKHPFPAFGGGSIVENKDSAKSQNG 178
           KSGFYYSD +G WVTQEEAYA+   +  ++H  PT+K         S  +   + K  N 
Sbjct: 118 KSGFYYSDTMGKWVTQEEAYASPHFTSNARHNGPTVKKSLST--SQSKSDGNQANKFNNR 175

Query: 179 PARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAKKR 238
            + GPVV ++LNP R+VK APSSLAVGKRKR   K    +K +S EE AA+KAREAA+KR
Sbjct: 176 SSPGPVV-TTLNPKRNVKAAPSSLAVGKRKRPGEK----SKVISDEEKAALKAREAARKR 230

Query: 239 VEEREKQLLGLYH 251
           V+EREK LLGLY+
Sbjct: 231 VQEREKPLLGLYN 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500317|ref|XP_003518979.1| PREDICTED: uncharacterized protein LOC100779677 isoform 2 [Glycine max]

 Score =  293 bits (749), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 156/253 (61%), Positives = 188/253 (74%), Gaps = 9/253 (3%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKIYISNNP SIRNH+LGQRHK+NV K+LA MRK+N AKEKE KE
Sbjct: 1   MTEYWVSQGNKWCDFCKIYISNNPGSIRNHELGQRHKDNVSKRLAAMRKDNIAKEKEQKE 60

Query: 61  TARALEQIEAKAKRSYQKDLAN-QEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDP 119
           TARA+EQIEAKA+RSYQKD A  +E R S+ +       W +D +SGYYY+++NG YYD 
Sbjct: 61  TARAIEQIEAKAQRSYQKDKAKFEETRESHELDDQGCNPWLFDSSSGYYYHKTNGFYYDQ 120

Query: 120 KSGFYYSDAIGNWVTQEEAYAAIPASLGSKHR-PTMKHPFPAFGGGSIVENKDSAKSQNG 178
           KSGFYYSD +G WVTQEEAYA+   +  ++H  PT+K         S  +   + K  N 
Sbjct: 121 KSGFYYSDTMGKWVTQEEAYASPHFTSNARHNGPTVKKSLST--SQSKSDGNQANKFNNR 178

Query: 179 PARGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAKKR 238
            + GPVV ++LNP R+VK APSSLAVGKRKR   K    +K +S EE AA+KAREAA+KR
Sbjct: 179 SSPGPVV-TTLNPKRNVKAAPSSLAVGKRKRPGEK----SKVISDEEKAALKAREAARKR 233

Query: 239 VEEREKQLLGLYH 251
           V+EREK LLGLY+
Sbjct: 234 VQEREKPLLGLYN 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115467074|ref|NP_001057136.1| Os06g0215200 [Oryza sativa Japonica Group] gi|51090392|dbj|BAD35314.1| formin-binding protein-related-like [Oryza sativa Japonica Group] gi|113595176|dbj|BAF19050.1| Os06g0215200 [Oryza sativa Japonica Group] gi|125596486|gb|EAZ36266.1| hypothetical protein OsJ_20587 [Oryza sativa Japonica Group] gi|215686790|dbj|BAG89640.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 145/252 (57%), Positives = 179/252 (71%), Gaps = 10/252 (3%)

Query: 1   MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKE 60
           MTEYWVSQGNKWCDFCKIYI+NNP SIR H++G+RHK+NV K+LA M+KE AAKEKE ++
Sbjct: 1   MTEYWVSQGNKWCDFCKIYIANNPLSIRTHEIGKRHKDNVTKRLATMQKEGAAKEKEQQQ 60

Query: 61  TARALEQIEAKAKRSYQKDLANQEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDPK 120
            ARAL+QIEAKAK+SYQKDL N +       +    + W++D TSGYYY++S GLY+D  
Sbjct: 61  AARALKQIEAKAKKSYQKDLENSQRNVDGDTSAAPGDGWEFDSTSGYYYDKSTGLYFDSN 120

Query: 121 SGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSAKSQNGPA 180
           SGFYYSD +G WVTQEEAYA    S  +  + +     P     ++   K       G A
Sbjct: 121 SGFYYSDGLGKWVTQEEAYAWAKTSQANAGQSSSSQTKPTASVATVPTIK------GGQA 174

Query: 181 RGPVVSSSLNPMRSVKGAPSSLAVGKRKREDNKLKKMAKPVSKEEAAAIKAREAAKKRVE 240
            G VV   LNPMR+VKGAPS++AV KRKRED K     K +SKEE AA+KAREAA+KR+E
Sbjct: 175 PGLVVKKPLNPMRTVKGAPSAIAVNKRKREDGK----PKVISKEEEAALKAREAARKRME 230

Query: 241 EREKQLLGLYHS 252
           +REK L+GLY S
Sbjct: 231 DREKPLMGLYRS 242

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2012222	242	AT1G49590 [Arabidopsis thalian	0.818	0.855	0.533	4.2e-56
UNIPROTKB|O75554	376	WBP4 "WW domain-binding protei	0.316	0.212	0.35	1.9e-13
UNIPROTKB|Q5F457	398	WBP4 "WW domain-binding protei	0.316	0.201	0.362	2.6e-13
RGD|620033	374	Wbp4 "WW domain binding protei	0.316	0.213	0.35	3.8e-13
UNIPROTKB|F1NXG2	398	WBP4 "WW domain-binding protei	0.316	0.201	0.362	5.2e-13
MGI|MGI:109568	376	Wbp4 "WW domain binding protei	0.316	0.212	0.337	6.6e-13
FB|FBgn0031287	338	CG4291 [Drosophila melanogaste	0.359	0.269	0.351	3.8e-12
UNIPROTKB|Q17QQ6	395	WBP4 "Uncharacterized protein"	0.316	0.202	0.362	2.1e-11
UNIPROTKB|F1PCW3	371	WBP4 "Uncharacterized protein"	0.316	0.215	0.35	2.3e-11
ZFIN|ZDB-GENE-050522-342	412	zgc:112384 "zgc:112384" [Danio	0.316	0.194	0.325	2.9e-09

TAIR|locus:2012222 AT1G49590 [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 118/221 (53%), Positives = 148/221 (66%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             MTEYWVSQGNKWC+FCKI+I NNP+SIRNHDLG+RH+E V KKL DMR            
Sbjct:     1 MTEYWVSQGNKWCEFCKIWIQNNPTSIRNHDLGKRHRECVDKKLTDMRERSAAKDKELKK 60

Query:    61 XXXXLEQIEAKAKRSYQKDLAN-QEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDP 119
                 L+QIEAKA RSYQKD+A  Q+   +N    +    W  D  SGYYYN++NGL+YD 
Sbjct:    61 NEKLLQQIEAKATRSYQKDIATAQQVAKANGAPEDGTSDWMLDSASGYYYNQTNGLHYDS 120

Query:   120 KSGFYYSDAIGNWVTQEEAYAAIPASLGSKHRPTMKHPFPAFGGGSIVENKDSAKSQNGP 179
             +SGFYYSD+IG+WVTQ+EAYAA+  S G+K  P +K P  + G G  V          G 
Sbjct:   121 QSGFYYSDSIGHWVTQDEAYAAVKTSSGTKV-PLVKKPVSSSGAGPSV----------GK 169

Query:   180 ARGPVVSSSLNPMRSVKGAPSSLAVG--KRKREDNKLKKMA 218
               G +V++SLNP R+VKGA SS+ +G  KRKR+D K KK++
Sbjct:   170 PPGRLVTASLNPKRAVKGAASSVDLGNNKRKRQDEKPKKVS 210

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O75554 WBP4 "WW domain-binding protein 4" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 28/80 (35%), Positives = 47/80 (58%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             M +YW SQ  K+CD+CK +I++N  S+  H+ G+ HKENV K++++++            
Sbjct:     1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK 60

Query:    61 XXXXLEQIEAKAKRSYQKDL 80
                    +EA A ++YQ+DL
Sbjct:    61 ASKEFAAMEAAALKAYQEDL 80

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IDA

GO:0070064 "proline-rich region binding" evidence=IPI

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q5F457 WBP4 "WW domain-binding protein 4" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             M +YW SQ  K+CD+CK +I++N  SI  H+ G+ HKENV K+++++R            
Sbjct:     1 MADYWKSQPKKFCDYCKCWIADNRPSIDFHERGKNHKENVAKRISEIRKKSMEKAKEEEN 60

Query:    61 XXXXLEQIEAKAKRSYQKDL 80
                    +E  A ++YQ+DL
Sbjct:    61 MSKEFAAMEEAAMKAYQEDL 80

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

RGD|620033 Wbp4 "WW domain binding protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
 Identities = 28/80 (35%), Positives = 47/80 (58%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             M +YW SQ  K+CD+CK +I++N  S+  H+ G+ HKENV +K+++++            
Sbjct:     1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARKISEIKQKSLDKAKEEEK 60

Query:    61 XXXXLEQIEAKAKRSYQKDL 80
                    +EA A ++YQ+DL
Sbjct:    61 ASKEFAAMEAAALKAYQEDL 80

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=ISO;ISS

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO;ISS

GO:0070064 "proline-rich region binding" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1NXG2 WBP4 "WW domain-binding protein 4" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             M +YW SQ  K+CD+CK +I++N  SI  H+ G+ HKENV K+++++R            
Sbjct:     1 MADYWKSQPKKFCDYCKCWIADNRPSIDFHERGKNHKENVAKRISEIRKKSMEKAKEEEN 60

Query:    61 XXXXLEQIEAKAKRSYQKDL 80
                    +E  A ++YQ+DL
Sbjct:    61 MSKEFAAMEEAAMKAYQEDL 80

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA

GO:0070064 "proline-rich region binding" evidence=IEA

MGI|MGI:109568 Wbp4 "WW domain binding protein 4" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
 Identities = 27/80 (33%), Positives = 47/80 (58%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             M +YW SQ  K+CD+CK +I++N  S+  H+ G+ HKENV +++++++            
Sbjct:     1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARRISEIKQKSLDKAKEEEK 60

Query:    61 XXXXLEQIEAKAKRSYQKDL 80
                    +EA A ++YQ+DL
Sbjct:    61 ASKEFAAMEAAALKAYQEDL 80

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=ISO

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070064 "proline-rich region binding" evidence=ISO

FB|FBgn0031287 CG4291 [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 33/94 (35%), Positives = 52/94 (55%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             MTEYW S   K+CDFCK ++S+N +S+  H+ G+RHK NV K++ D+             
Sbjct:     1 MTEYWKSNERKFCDFCKCWLSDNKASVAFHESGKRHKMNVAKRITDISRNSEKSERERQK 60

Query:    61 XXXXLEQIEAKAKRSYQKDL---ANQEARNSNAV 91
                 + ++E  A +SY +D+    +  AR+ N V
Sbjct:    61 MDAEIRKMEEAAMKSYAQDVHSRGDMTARSINTV 94

GO:0017058 "FH1 domain binding" evidence=ISS

GO:0005686 "U2 snRNP" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0071011 "precatalytic spliceosome" evidence=IDA

UNIPROTKB|Q17QQ6 WBP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 29/80 (36%), Positives = 47/80 (58%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             M +YW SQ  K+CD+CK +I++N  SI  H+ G+ HKENV K++++++            
Sbjct:     1 MADYWKSQPKKFCDYCKCWIADNRPSIEFHERGKNHKENVAKRISEIKQKSLEKAKEEEK 60

Query:    61 XXXXLEQIEAKAKRSYQKDL 80
                    +EA A ++YQ+DL
Sbjct:    61 ASKEFAAMEAAALKAYQEDL 80

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1PCW3 WBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 28/80 (35%), Positives = 47/80 (58%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             M +YW SQ  K+CD+CK +I++N  S+  H+ G+ HKENV K++++++            
Sbjct:     1 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK 60

Query:    61 XXXXLEQIEAKAKRSYQKDL 80
                    +EA A ++YQ+DL
Sbjct:    61 ASKEFAAMEAAALKAYQEDL 80

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050522-342 zgc:112384 "zgc:112384" [Danio rerio (taxid:7955)]

 Score = 149 (57.5 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 26/80 (32%), Positives = 44/80 (55%)

Query:     1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRXXXXXXXXXXXX 60
             M +YW SQ  K+C +CK +I++N  S+  H+ G+ HKENV  K+ ++R            
Sbjct:     1 MADYWKSQPRKFCQYCKCWIADNKPSVEFHERGKNHKENVAAKIQEIRKKSVAKAKQEKK 60

Query:    61 XXXXLEQIEAKAKRSYQKDL 80
                    +E  A+++Y++DL
Sbjct:    61 MSKDFAAMEDAAQKAYEEDL 80

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam06220	38	pfam06220, zf-U1, U1 zinc finger	5e-04
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	7e-04

>gnl|CDD|114912 pfam06220, zf-U1, U1 zinc finger

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 25/33 (75%), Gaps = 1/33 (3%)

Query: 11 KWCDFCKIYISNN-PSSIRNHDLGQRHKENVQK 42
           +CD+C  Y++++ PS  ++H+ G++HK+NV+ 
Sbjct: 4  YYCDYCDCYLTHDSPSVRKSHNGGRKHKDNVKD 36

This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. Length = 38

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 8  QGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQK 42
           G  +C  C +  ++  S +  H  G++HK+NV+K
Sbjct: 1  TGGFYCKLCNVTFTDEIS-VEAHLKGKKHKKNVKK 34

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	100.0
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	99.54
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	99.21
COG5136	188	U1 snRNP-specific protein C [RNA processing and mo	98.52
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.46
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.99
KOG4727	193	consensus U1-like Zn-finger protein [General funct	96.87
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.35
KOG0154	573	consensus RNA-binding protein RBM5 and related pro	94.98
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	91.56
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	90.58
KOG2950	348	consensus Uncharacterized protein involved in prot	90.25
KOG2384	223	consensus Major histocompatibility complex protein	89.09
PF14968	336	CCDC84: Coiled coil protein 84	87.25
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	86.05
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	84.61
PF15232	75	DUF4585: Domain of unknown function (DUF4585)	83.96
KOG0796	319	consensus Spliceosome subunit [RNA processing and	81.43
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	80.86

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=100.00  E-value=2.8e-45  Score=338.21  Aligned_cols=237  Identities=33%  Similarity=0.449  Sum_probs=200.6

Q ss_pred             CcchhhhcCccccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025398            1 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQIEAKAKRSYQKDL   80 (253)
Q Consensus         1 MtEYWkS~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k~~~~keKe~~~~~~eL~rIEaaA~~AY~kDl   80 (253)
                      ||||||||+|+|||||+|||.||++||++||+|.||++||+++|++|++++..++++.+++..+|++||++|+++|++||
T Consensus         1 MaeYWkS~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kritdi~rks~~kekeekKls~~la~mEaaA~~syaedl   80 (336)
T KOG0150|consen    1 MAEYWKSQPKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRITDIHRKSLKKEKEEKKLSKELAAMEAAASASYAEDL   80 (336)
T ss_pred             CchhhhhccchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh-hhhhhccccccCCCCCceeeCCcceeEeCCCceEecC--CCCceeeCCC-----CccccccchhhcccccCCCCCCC
Q 025398           81 AN-QEARNSNAVALNDHEKWDYDGTSGYYYNESNGLYYDP--KSGFYYSDAI-----GNWVTQEEAYAAIPASLGSKHRP  152 (253)
Q Consensus        81 ~~-~~~~~~~~~~~~~~s~~vyD~sSGYYYd~~TG~YYDp--~tg~YY~~~t-----g~W~~~~e~Y~~~~~~~~~~~~~  152 (253)
                      .. +.-..-.++.+...++|.-++.||++++...|.-+||  -+|+++++..     ..|++.++.+........+.. +
T Consensus        81 ~~~g~~~e~~~psk~r~s~tma~s~ss~~~~~~r~~q~d~~~vsg~~~s~a~q~~~~~g~v~~~e~~~~~k~wv~~Kn-e  159 (336)
T KOG0150|consen   81 SYEGLKKEIPGPSKLRPSKTMATSDSSADINTKRGRQDDPPNVSGTHDSPALQEYIPTGLVTKDEANAETKEWVEGKN-E  159 (336)
T ss_pred             hhcchhhhcCCCccCCccccccccccccccccccccccCcccccccccCccchhhccccccchhhhhhhhhhcccccC-C
Confidence            98 3322333445577889999999999999999999999  8999999443     468888888776554443322 1


Q ss_pred             CCCCCCCccCCcccccccCccCCCCCCCCccccccCCCCCcccCCCcccccc--ccccccccccccCCCCCCHHHHHHHH
Q 025398          153 TMKHPFPAFGGGSIVENKDSAKSQNGPARGPVVSSSLNPMRSVKGAPSSLAV--GKRKREDNKLKKMAKPVSKEEAAAIK  230 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~p~~~~kga~s~~a~--~krkr~~~~~~~~~~~~s~ee~~al~  230 (253)
                      ...+  .++.        ..++..-.-+|+...++.++|.+..|++-.++..  ++|+|++++..    .++.|++++++
T Consensus       160 s~~~--yy~n--------~~t~esvwk~P~~~~ts~~~~kr~nk~~q~avDe~nnsr~~qe~~~r----k~~ee~k~~~k  225 (336)
T KOG0150|consen  160 SGPT--YYSN--------KRTNESVWKPPRISFTSRLEPKRANKVPQLAVDEGNNSRERQESKER----KVVEEEKASGK  225 (336)
T ss_pred             CCCC--ccee--------cCCCccccCCCCcccccccChhhhcccchhcccccchhhhhhhcccc----hhhHHHHhhhh
Confidence            1111  1221        1455666788999999999999999997777666  67888888888    89999999999


Q ss_pred             HHHHHHHHHHHHhhhhcccc-cC
Q 025398          231 AREAAKKRVEEREKQLLGLY-HS  252 (253)
Q Consensus       231 areaarkrv~~r~~~~~gly-~~  252 (253)
                      +||++..|+.|+++.|+||| ++
T Consensus       226 ~re~~s~r~sDp~kel~~~~erp  248 (336)
T KOG0150|consen  226 EREKSSDRESDPPKELLGLYERP  248 (336)
T ss_pred             hhhhhhcccCCChHHHHHHhhcc
Confidence            99999999999999999999 44

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.54  E-value=1.9e-15  Score=101.78  Aligned_cols=37  Identities=35%  Similarity=0.795  Sum_probs=23.0

Q ss_pred             cCccccccccccccCChhh-hhhhhchhhHHHHHHHHH
Q 025398            8 QGNKWCDFCKIYISNNPSS-IRNHDLGQRHKENVQKKL   44 (253)
Q Consensus         8 ~~K~yCdyCkvwi~dn~~S-ir~HE~G~kHk~NV~k~L   44 (253)
                      +||||||||++||++|.++ +++||+|.+|++||+++|
T Consensus         1 m~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~y   38 (38)
T PF06220_consen    1 MPRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRYY   38 (38)
T ss_dssp             --S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHHT
T ss_pred             CcCeecccccceecCCChHHHHHhhccHHHHHHHHHhC
Confidence            5899999999999877755 599999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=99.21  E-value=1.5e-11  Score=106.20  Aligned_cols=43  Identities=28%  Similarity=0.662  Sum_probs=39.2

Q ss_pred             cCccccccccccccCChhhh-hhhhchhhHHHHHHHHHHHHHHH
Q 025398            8 QGNKWCDFCKIYISNNPSSI-RNHDLGQRHKENVQKKLADMRKE   50 (253)
Q Consensus         8 ~~K~yCdyCkvwi~dn~~Si-r~HE~G~kHk~NV~k~Lrei~k~   50 (253)
                      .+|||||||++||++|.+|+ +.|..|++|+.||+.++....++
T Consensus         1 MpRYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~ee   44 (165)
T KOG3454|consen    1 MPRYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEE   44 (165)
T ss_pred             CCcchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            47999999999999998887 69999999999999999988753

>COG5136 U1 snRNP-specific protein C [RNA processing and modification]

Probab=98.52  E-value=9e-08  Score=83.30  Aligned_cols=42  Identities=17%  Similarity=0.407  Sum_probs=38.8

Q ss_pred             cCccccccccccccCChhhh-hhhhchhhHHHHHHHHHHHHHH
Q 025398            8 QGNKWCDFCKIYISNNPSSI-RNHDLGQRHKENVQKKLADMRK   49 (253)
Q Consensus         8 ~~K~yCdyCkvwi~dn~~Si-r~HE~G~kHk~NV~k~Lrei~k   49 (253)
                      ++|||||||.+||++|..|+ +.|..|++|.-+++.+++++-+
T Consensus         1 MpRY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dYY~~~a~   43 (188)
T COG5136           1 MPRYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYYMEMAE   43 (188)
T ss_pred             CcchHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            47999999999999999887 6999999999999999998766

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.46  E-value=7.5e-08  Score=61.51  Aligned_cols=33  Identities=33%  Similarity=0.769  Sum_probs=30.1

Q ss_pred             CccccccccccccCChhhhhhhhchhhHHHHHHH
Q 025398            9 GNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQK   42 (253)
Q Consensus         9 ~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k   42 (253)
                      +++||++|++|+. +..+.++|..|++|+.||++
T Consensus         2 ~~~~C~~C~~~~~-~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFT-DEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccC-CHHHHHHHHChHHHHHHHHc
Confidence            6799999999999 66778999999999999975

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.99  E-value=0.00036  Score=42.88  Aligned_cols=27  Identities=30%  Similarity=0.742  Sum_probs=23.6

Q ss_pred             ccccccccccccCChhhhhhhhchhhHH
Q 025398           10 NKWCDFCKIYISNNPSSIRNHDLGQRHK   37 (253)
Q Consensus        10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk   37 (253)
                      ++||++|+.++.+. ...+.|.+|++||
T Consensus         1 q~~C~~C~k~f~~~-~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSE-NQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSH-HHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCH-HHHHHHHccCCCC
Confidence            48999999999865 7789999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=96.87  E-value=0.0029  Score=56.05  Aligned_cols=36  Identities=22%  Similarity=0.601  Sum_probs=30.3

Q ss_pred             CccccccccccccCChhhhhhhhchhhHHHHHHHHHH
Q 025398            9 GNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA   45 (253)
Q Consensus         9 ~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lr   45 (253)
                      +-|||++|+|-|.|. ++.-.|-+|++|+.|+.--++
T Consensus        74 ~GyyCdVCdcvvKDS-inflDHiNgKkHqrnlgmsm~  109 (193)
T KOG4727|consen   74 GGYYCDVCDCVVKDS-INFLDHINGKKHQRNLGMSMR  109 (193)
T ss_pred             Cceeeeecceeehhh-HHHHHHhccHHHHHHHhhhhc
Confidence            469999999999976 666789999999999876554

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.35  E-value=0.0014  Score=38.92  Aligned_cols=25  Identities=32%  Similarity=0.688  Sum_probs=22.5

Q ss_pred             cccccccccccCChhhhhhhhchhhH
Q 025398           11 KWCDFCKIYISNNPSSIRNHDLGQRH   36 (253)
Q Consensus        11 ~yCdyCkvwi~dn~~Sir~HE~G~kH   36 (253)
                      ++|+.|++.+.+ ..+.+.|.+|.+|
T Consensus         1 ~~C~~C~~~f~s-~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSS-ENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESS-HHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCC-HHHHHHHHCcCCC
Confidence            689999999985 4889999999998

>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]

Probab=94.98  E-value=0.019  Score=57.48  Aligned_cols=56  Identities=27%  Similarity=0.481  Sum_probs=47.1

Q ss_pred             ccCCCCCceeeCCcceeEeCCCceEecCCCCceeeCCCCc---cccccchhhcccccCC
Q 025398           92 ALNDHEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGN---WVTQEEAYAAIPASLG  147 (253)
Q Consensus        92 ~~~~~s~~vyD~sSGYYYd~~TG~YYDp~tg~YY~~~tg~---W~~~~e~Y~~~~~~~~  147 (253)
                      +.++...+.||++++||+++.+.+|||..+++||+..+++   |+.....|+++..++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~d~~~s~~~~~~~~~~  282 (573)
T KOG0154|consen  224 PTPKKDEGQYDETDEYYEDPETSVYYDTDSGLYFNDASSQYLYGDDEQSDYFYAKLSPS  282 (573)
T ss_pred             cCCcccccccccccCceecCCccceeeccccceeccccccccccCCCcceeeecccccc
Confidence            3366788999999999999999999999999999999997   7777777777444443

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=91.56  E-value=0.19  Score=50.49  Aligned_cols=39  Identities=26%  Similarity=0.554  Sum_probs=30.7

Q ss_pred             ccccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHH
Q 025398           10 NKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRK   49 (253)
Q Consensus        10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k   49 (253)
                      -.||-+|+--+..- -.++|||++++|++||.+.=.+|..
T Consensus       292 ~lyC~vCnKsFKse-Kq~kNHEnSKKHkenv~eLrqemEE  330 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSE-KQLKNHENSKKHKENVAELRQEMEE  330 (508)
T ss_pred             ceEEeeccccccch-HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            48999999888744 4689999999999998875444433

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=90.58  E-value=0.17  Score=45.84  Aligned_cols=45  Identities=29%  Similarity=0.496  Sum_probs=35.7

Q ss_pred             hcCccccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 025398            7 SQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENA   52 (253)
Q Consensus         7 S~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k~~~   52 (253)
                      +.++|-|..|...- +|-.|.-.|-.|++|+.||.++-..+.+++.
T Consensus        50 h~G~yeCkLClT~H-~ne~Syl~HtqGKKHq~Nlarraa~e~k~s~   94 (222)
T KOG0227|consen   50 HLGKYECKLCLTLH-NNEGSYLAHTQGKKHQTNLARRAAKEAKESP   94 (222)
T ss_pred             cCcceeehhhhhhh-cchhhhhhhhccchhhHHHHHHHHHHhhcCc
Confidence            45789999998643 4558999999999999999987766665543

>KOG2950 consensus Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain [General function prediction only]

Probab=90.25  E-value=0.077  Score=51.16  Aligned_cols=40  Identities=18%  Similarity=0.358  Sum_probs=36.5

Q ss_pred             CCCceeeCCcceeEeCCCceEecCCCCceeeCCCCccccc
Q 025398           96 HEKWDYDGTSGYYYNESNGLYYDPKSGFYYSDAIGNWVTQ  135 (253)
Q Consensus        96 ~s~~vyD~sSGYYYd~~TG~YYDp~tg~YY~~~tg~W~~~  135 (253)
                      ...|.||...+|++=++.+++|++++|||+++.+..|...
T Consensus       291 efkwe~d~~~~yGp~ts~~m~~w~~egyf~~~v~~r~~~~  330 (348)
T KOG2950|consen  291 EFKWEFDEDEYYGPYTSSEMQYWQNEGYFKNAVYVRFHDE  330 (348)
T ss_pred             eeEeecccccccccccHHHHhhhhccCccccceeEEeecC
Confidence            3468899999999999999999999999999999999884

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=89.09  E-value=0.14  Score=46.49  Aligned_cols=29  Identities=34%  Similarity=0.629  Sum_probs=22.8

Q ss_pred             ccccccccccccCChhhhhhhhchhhHHHHH
Q 025398           10 NKWCDFCKIYISNNPSSIRNHDLGQRHKENV   40 (253)
Q Consensus        10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV   40 (253)
                      -+||+.|+++|.+++-+  +|-.+.-|+-|+
T Consensus        84 lfyCE~Cd~~ip~~~~s--nH~tSttHllsl  112 (223)
T KOG2384|consen   84 LFYCEVCDIYIPNSKKS--NHFTSTTHLLSL  112 (223)
T ss_pred             cchhhhhhhhccCCCCc--cchhhHHHHhhh
Confidence            47999999999998654  577777785443

>PF14968 CCDC84: Coiled coil protein 84

Probab=87.25  E-value=0.43  Score=45.99  Aligned_cols=44  Identities=25%  Similarity=0.443  Sum_probs=36.1

Q ss_pred             hcCccccccccccccCChhh-----hhhhhchhhHHHHHHHHHHHHHHH
Q 025398            7 SQGNKWCDFCKIYISNNPSS-----IRNHDLGQRHKENVQKKLADMRKE   50 (253)
Q Consensus         7 S~~K~yCdyCkvwi~dn~~S-----ir~HE~G~kHk~NV~k~Lrei~k~   50 (253)
                      +..++||-||.+=|.++..+     .-.|-.+.-|+.||.+|+.+=+-+
T Consensus        55 ~~~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F~w~~g~~  103 (336)
T PF14968_consen   55 HRNRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKFWWKNGAD  103 (336)
T ss_pred             ccceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHHHHHcCCC
Confidence            45689999999999988443     358999999999999999864443

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=86.05  E-value=1.1  Score=41.36  Aligned_cols=45  Identities=20%  Similarity=0.533  Sum_probs=32.8

Q ss_pred             Ccccccccccccc--CChhhhhhhhchhhHHH--HHHHHHHHHHHHHHH
Q 025398            9 GNKWCDFCKIYIS--NNPSSIRNHDLGQRHKE--NVQKKLADMRKENAA   53 (253)
Q Consensus         9 ~K~yCdyCkvwi~--dn~~Sir~HE~G~kHk~--NV~k~Lrei~k~~~~   53 (253)
                      .-.-|++|-.||.  |+..=+..|-.|+.|.+  .|+..|.+|......
T Consensus       189 kl~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~el~e~~~~  237 (254)
T PF03194_consen  189 KLEVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLKELKEKREE  237 (254)
T ss_pred             CccchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence            3478999999986  44344689999999997  456667666665444

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=84.61  E-value=0.66  Score=41.94  Aligned_cols=37  Identities=30%  Similarity=0.463  Sum_probs=30.9

Q ss_pred             hhcCccccccccccccCChhhhhhhhchhhHHHHHHHH
Q 025398            6 VSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKK   43 (253)
Q Consensus         6 kS~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~   43 (253)
                      -+.+++-|..|+.--.+ -+|.-.|-.|++|+.|+.++
T Consensus        49 nh~Gk~vC~LC~T~H~~-e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          49 NHTGKYVCLLCKTKHLT-EMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             cCCCcEEeeeecccccc-HHHHHHhhccchhhhhHHHH
Confidence            35679999999875443 37889999999999999988

>PF15232 DUF4585: Domain of unknown function (DUF4585)

Probab=83.96  E-value=0.7  Score=35.93  Aligned_cols=27  Identities=37%  Similarity=0.647  Sum_probs=14.2

Q ss_pred             CceeeCCcceeE--e----CCCceEecCCCCce
Q 025398           98 KWDYDGTSGYYY--N----ESNGLYYDPKSGFY  124 (253)
Q Consensus        98 ~~vyD~sSGYYY--d----~~TG~YYDp~tg~Y  124 (253)
                      .---|+.||=||  |    +.+..+|||.||-|
T Consensus         9 KvL~DP~SG~Yy~vd~P~Qp~~k~lfDPETGqY   41 (75)
T PF15232_consen    9 KVLQDPESGQYYVVDAPVQPKTKTLFDPETGQY   41 (75)
T ss_pred             cEeecCCCCCEEEEecCCCcceeeeecCCCCcE
Confidence            345688998444  2    23344455544443

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=81.43  E-value=2  Score=41.37  Aligned_cols=46  Identities=26%  Similarity=0.550  Sum_probs=34.1

Q ss_pred             Ccccccccccccc--CChhhhhhhhchhhHHHH--HHHHHHHHHHHHHHH
Q 025398            9 GNKWCDFCKIYIS--NNPSSIRNHDLGQRHKEN--VQKKLADMRKENAAK   54 (253)
Q Consensus         9 ~K~yCdyCkvwi~--dn~~Sir~HE~G~kHk~N--V~k~Lrei~k~~~~k   54 (253)
                      +---|++|-+||.  |+..=|..|-+|+-|.+-  |+.+|.+|.+....-
T Consensus       185 kl~VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~iR~~l~eLk~~~~~~  234 (319)
T KOG0796|consen  185 KLRVCEVCGAFLSVNDADRRLADHFGGKLHLGYVLIREKLAELKKEKAKR  234 (319)
T ss_pred             hhhHHHhhhHHHhccchHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHH
Confidence            3456999999988  444456899999999985  456777777764443

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=80.86  E-value=3.7  Score=36.21  Aligned_cols=46  Identities=20%  Similarity=0.452  Sum_probs=40.4

Q ss_pred             cccccccccccCChhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 025398           11 KWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLADMRKENAAKEK   56 (253)
Q Consensus        11 ~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lrei~k~~~~keK   56 (253)
                      -.|--|++||..-..+|+.|-.+.-|..|-+.+.-++++...--.+
T Consensus        92 ~hCsACd~~IP~~~~~vQ~Hl~S~~H~~Nrr~~~eq~Kr~sl~vA~  137 (165)
T PF04988_consen   92 AHCSACDVFIPMQHSSVQKHLKSQDHNKNRRAMMEQSKRSSLSVAR  137 (165)
T ss_pred             hhhhHhhhhccCcHHHHHHHhccHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999999999988888887665544

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	3e-05

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A Length = 77

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 12 WCDFCKIYISNNPSSIR-NHDLGQRHKENV----QKKLADMRKENAAKEKEHKETARA 64
          +CD+C  Y++++  S+R  H  G++HKENV     K + +  +    K     +  + 
Sbjct: 5  YCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQAQSLIDKTTAAFQQGKI 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	99.56
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.86
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.29
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.76
1e0n_A	27	Hypothetical protein; YJQ8WW domain, WW domain, sa	92.73
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	85.21
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	84.52

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=99.56  E-value=3.1e-15  Score=113.89  Aligned_cols=43  Identities=30%  Similarity=0.663  Sum_probs=39.5

Q ss_pred             cCccccccccccccCChhh-hhhhhchhhHHHHHHHHHHHHHHH
Q 025398            8 QGNKWCDFCKIYISNNPSS-IRNHDLGQRHKENVQKKLADMRKE   50 (253)
Q Consensus         8 ~~K~yCdyCkvwi~dn~~S-ir~HE~G~kHk~NV~k~Lrei~k~   50 (253)
                      +||||||||+|||++|.++ +++|++|++|+.||+.+|+++.++
T Consensus         1 mPkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~~~~~~   44 (77)
T 3cw1_L            1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEE   44 (77)
T ss_pred             CCCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            4899999999999877766 689999999999999999999975

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.86  E-value=0.00052  Score=55.01  Aligned_cols=37  Identities=24%  Similarity=0.547  Sum_probs=31.4

Q ss_pred             hhcCccccccccccccCChhhhhhhhchhhHHHHHHHH
Q 025398            6 VSQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKK   43 (253)
Q Consensus         6 kS~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~   43 (253)
                      ...+.+||+.|++|+. ......+|-.|++|+.+|++.
T Consensus        89 ~~~~~~~C~~C~~~f~-s~~~~~~H~~gk~H~~~~~~~  125 (127)
T 1zu1_A           89 GEDRSKCCPVCNMTFS-SPVVAESHYIGKTHIKNLRLR  125 (127)
T ss_dssp             CCCTTTEETTTTEECS-SHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCCCCeEcCCCCCEeC-CHHHHHHHHCCHHHHHHHHHh
Confidence            3456899999999998 557789999999999998764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.29  E-value=0.0018  Score=51.80  Aligned_cols=35  Identities=20%  Similarity=0.428  Sum_probs=29.4

Q ss_pred             ccccccccccccCChhhhhhhhchhhHHHHHHHHHH
Q 025398           10 NKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA   45 (253)
Q Consensus        10 K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lr   45 (253)
                      .++|.+|++.+. +...+..|..|++|+.||+.++.
T Consensus        32 ~~~C~~C~v~~~-S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           32 DTQCKVCSAVLI-SESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SSEETTTTEECC-SHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcCcCCCCEeC-CHHHHHHHHCcHHHHHHHHHHhc
Confidence            479999999887 44677899999999999976654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.76  E-value=0.012  Score=47.97  Aligned_cols=35  Identities=20%  Similarity=0.461  Sum_probs=29.8

Q ss_pred             cCccccccccccccCChhhhhhhhchhhHHHHHHHH
Q 025398            8 QGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKK   43 (253)
Q Consensus         8 ~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~   43 (253)
                      ...|||..|..++... ..+..|.+++.|+.+|.+.
T Consensus        48 ekpfyC~~C~K~F~~~-~~L~~H~rsK~HKrrvk~l   82 (124)
T 1zr9_A           48 GGLHRCLACARYFIDS-TNLKTHFRSKDHKKRLKQL   82 (124)
T ss_dssp             GGCSEETTTTEECSSH-HHHHHHTTCHHHHHHHHHH
T ss_pred             CcceEcccCcchhCCH-HHHHHHHhhhhhhHHHHHh
Confidence            4579999999999955 7889999999998887653

>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1

Probab=92.73  E-value=0.05  Score=33.26  Aligned_cols=17  Identities=29%  Similarity=0.716  Sum_probs=13.4

Q ss_pred             CceeeCCcc--eeEeCCCc
Q 025398           98 KWDYDGTSG--YYYNESNG  114 (253)
Q Consensus        98 ~~vyD~sSG--YYYd~~TG  114 (253)
                      +|.+|.++|  ||||..|+
T Consensus         2 gWe~~~~~g~~YYyN~~T~   20 (27)
T 1e0n_A            2 GWEIIHENGRPLYYNAEQK   20 (27)
T ss_dssp             CEEEEESSSSEEEEETTTT
T ss_pred             CCeEECCCCCeEEEECCCC
Confidence            577888888  77777776

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=85.21  E-value=0.4  Score=34.23  Aligned_cols=36  Identities=25%  Similarity=0.482  Sum_probs=31.4

Q ss_pred             CccccccccccccCChhhhhhhhchhhHHHHHHHHHH
Q 025398            9 GNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA   45 (253)
Q Consensus         9 ~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lr   45 (253)
                      |+--|.+|.|-... ..|++.|-=++.|+++|+..|.
T Consensus        12 P~~eC~lC~vkYs~-r~slqDHIFs~qHI~~vk~~v~   47 (55)
T 2yrk_A           12 TKPECTLCGVKYSA-RLSIRDHIFSKQHISKVRETVG   47 (55)
T ss_dssp             CCSCCTTTTCCCCS-SSCHHHHHTSHHHHHHHHHTTC
T ss_pred             CCccccccCccccc-ccchhhhhccHHHHHHHHHHHH
Confidence            56689999998874 4999999999999999998775

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=84.52  E-value=0.81  Score=43.59  Aligned_cols=33  Identities=33%  Similarity=0.685  Sum_probs=27.5

Q ss_pred             cCccccccccccccCChhhh-hhhhchhhHHHHHHH
Q 025398            8 QGNKWCDFCKIYISNNPSSI-RNHDLGQRHKENVQK   42 (253)
Q Consensus         8 ~~K~yCdyCkvwi~dn~~Si-r~HE~G~kHk~NV~k   42 (253)
                      ....||..|.-|+..  .++ ..|-.|++|+.++++
T Consensus       290 ~~~l~C~~c~K~Fs~--~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          290 AKGIYCPFCSRWFKT--SSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             TTEECBTTTTBCBSS--HHHHHTTSSSHHHHHHHHH
T ss_pred             CcCeeehhhhhhhcc--ccccHHHhcccccchhHHH
Confidence            456899999999994  355 899999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d2vrda1	61	g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human	2e-05

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 11 KWCDFCKIYISNNPSSIR-NHDLGQRHKENVQKKLADMRKENAAKEKEHKETARALEQ 67
           +CD+C  Y++++  S+R  H  G++HKENV+       +E A    +  +T  A +Q
Sbjct: 4  FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLID--KTTAAFQQ 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	99.47
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	96.74
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	95.78
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	92.48
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	91.39
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	91.3

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.9e-16  Score=111.94  Aligned_cols=43  Identities=30%  Similarity=0.700  Sum_probs=38.9

Q ss_pred             cCccccccccccccCChhhh-hhhhchhhHHHHHHHHHHHHHHH
Q 025398            8 QGNKWCDFCKIYISNNPSSI-RNHDLGQRHKENVQKKLADMRKE   50 (253)
Q Consensus         8 ~~K~yCdyCkvwi~dn~~Si-r~HE~G~kHk~NV~k~Lrei~k~   50 (253)
                      +||||||||++||++|++|+ ++|++|++|++||..+++.+.++
T Consensus         1 MpryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~~~~~~   44 (61)
T d2vrda1           1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEE   44 (61)
T ss_dssp             CCSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTSSSSSS
T ss_pred             CCchhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            58999999999999998885 79999999999999999977655

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00025  Score=50.77  Aligned_cols=33  Identities=21%  Similarity=0.520  Sum_probs=28.9

Q ss_pred             CccccccccccccCChhhhhhhhchhhHHHHHHH
Q 025398            9 GNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQK   42 (253)
Q Consensus         9 ~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k   42 (253)
                      +.|||-.|..++.+. ..+.+|+++++||.+|.+
T Consensus        14 gqfYCv~C~K~F~se-~~l~~H~ksKkHKrrvk~   46 (67)
T d1zr9a1          14 GLHRCLACARYFIDS-TNLKTHFRSKDHKKRLKQ   46 (67)
T ss_dssp             GCSEETTTTEECSSH-HHHHHHTTCHHHHHHHHH
T ss_pred             CEEecccccCccCCH-HHHHHHHcccHHHHHHHH
Confidence            569999999999865 789999999999987765

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.78  E-value=0.0025  Score=43.97  Aligned_cols=35  Identities=26%  Similarity=0.583  Sum_probs=28.6

Q ss_pred             hcCccccccccccccCChhhhhhhhchhhHHHHHHH
Q 025398            7 SQGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQK   42 (253)
Q Consensus         7 S~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k   42 (253)
                      ..+.+||+.|++|+. ++.--+.|-.|+.|..||+.
T Consensus        18 ~d~nk~C~lCn~~Fn-s~~~AqsHY~GK~H~K~lk~   52 (55)
T d1zu1a2          18 EDRSKCCPVCNMTFS-SPVVAESHYIGKTHIKNLRL   52 (55)
T ss_dssp             CCTTTEETTTTEECS-SHHHHHHHHTSHHHHHHHHH
T ss_pred             CCchhhhhhhhcccC-CHHHHHHHhhhhHHHHHHHH
Confidence            346789999999997 44556899999999888764

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=92.48  E-value=0.026  Score=40.50  Aligned_cols=34  Identities=21%  Similarity=0.432  Sum_probs=28.8

Q ss_pred             cccccccccccCChhhhhhhhchhhHHHHHHHHHH
Q 025398           11 KWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA   45 (253)
Q Consensus        11 ~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lr   45 (253)
                      -||++|.+-|... ..+-.|=.|++|..||+.++.
T Consensus        33 ~~CkvC~a~L~se-SQriaHYeskkHa~kvr~yf~   66 (72)
T d1zu1a1          33 TQCKVCSAVLISE-SQKLAHYQSRKHANKVRRYMA   66 (72)
T ss_dssp             SEETTTTEECCSH-HHHHHHHHCHHHHHHHHHHHH
T ss_pred             hhHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            6899999998855 345699999999999998874

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.076  Score=32.44  Aligned_cols=26  Identities=31%  Similarity=0.759  Sum_probs=18.3

Q ss_pred             CCce--eeCCcc--eeEeCCCc-eEecCCCC
Q 025398           97 EKWD--YDGTSG--YYYNESNG-LYYDPKSG  122 (253)
Q Consensus        97 s~~v--yD~sSG--YYYd~~TG-~YYDp~tg  122 (253)
                      .+|.  +|+++|  ||||..|+ --|+..|+
T Consensus         4 ~GW~~~~d~~~G~~YY~n~~T~~T~W~~Pt~   34 (34)
T d1pina1           4 PGWEKRMSRSSGRVYYFNHITNASQWERPSG   34 (34)
T ss_dssp             TTEEEEECTTSCCEEEEETTTCCEESSCSCC
T ss_pred             CCcEEEECCCCCCEEEEECCCCCEEccCCCC
Confidence            4674  898888  88888888 45555543

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.041  Score=36.72  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=32.0

Q ss_pred             cCccccccccccccCChhhhhhhhchhhHHHHHHHHHH
Q 025398            8 QGNKWCDFCKIYISNNPSSIRNHDLGQRHKENVQKKLA   45 (253)
Q Consensus         8 ~~K~yCdyCkvwi~dn~~Sir~HE~G~kHk~NV~k~Lr   45 (253)
                      .|+.-|.+|++=.+ .+.|++.|-=++.|+++|+..+.
T Consensus         4 gp~~eC~lC~vKYs-~~~SvrdHiFskqHI~~Vk~~v~   40 (48)
T d2yrka1           4 GTKPECTLCGVKYS-ARLSIRDHIFSKQHISKVRETVG   40 (48)
T ss_dssp             CCCSCCTTTTCCCC-SSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             CCcccCcccceeee-eecchHhhhhhHHHHHHHHHHHH
Confidence            36788999998776 56999999999999999998765