Citrus Sinensis ID: 025435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF
Secondary Structure (PSIPRED)
cccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccccccccccccccccccccccccccccccEccccccHHHHHccccccHHHHHHcccccEEEEEcccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHEEHEccccccccccccEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHcccHEEHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MSTQFRASYyqhngssittapslhscssfiisklpdhplsgnkrslllgtslsfnsnketTSVIRRRKrknfehgivasssnvatpiweswkpqkgssnpslsdilwpsAGAFAAMAILGKMDqilapkgfsitiAPLGAVCAVLfatpstpaarKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYaraphppaaslpilfidgvklhSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF
Flexible Loop (DISEMBL)
MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLllgtslsfnsnkettsvirrrkrknfehgivasssnvatpiweSWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF
Low Complexity Region (SEG)
MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF
Disordered region (IsUnstruct)
*************************CSSFIIS******************************************GIV*****VATPIWES************SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKD****
Disordered Region (DISOPRED)
*************************CSSF**************************************************************************DILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDN***
Disordered Region (DISEMBL)
********YYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWES**********SLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF
Disordered Region (DISPRO)
*STQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q55EF8	285	Transmembrane protein DDB	yes	no	0.573	0.508	0.213	0.0002

>sp|Q55EF8|Y9096_DICDI Transmembrane protein DDB_G0269096 OS=Dictyostelium discoideum GN=DDB_G0269096 PE=4 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 5/150 (3%)

Query: 100 PSLSDILWPSAGAFAAMAILGKMDQILAPKG-FSITIAPLGAVCAVLFATPSTPAARKYN 158
           P L +I W    +F  + +L  +    A      + I    A   ++F  P +P A+  N
Sbjct: 122 PDLEEIGWTWLASFTGILVLALIHYREALDAQMQVLIGSFAASAVIIFGVPKSPLAQPRN 181

Query: 159 VFMSQIGCAAIG--VLAFSIFGPGWLARSAGLAASIAFMI--YARAPHPPAASLPILFID 214
           + M     A +G  +    ++       +  LA S++ M+  +  + HPP  +  ++ + 
Sbjct: 182 LIMGHFLSAVVGSVIRVALVYTNANFEVACALAVSLSIMLMQFTNSLHPPGGATALICVM 241

Query: 215 GVKLHSLNFWYALFPGAAGCIILCLIQEIV 244
           GV+     F++   P  +G +I+ L   +V
Sbjct: 242 GVEQRWRGFYFIFVPILSGALIMLLTALVV 271

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
225456660	242	PREDICTED: uncharacterized protein LOC10	0.956	1.0	0.648	4e-83
297734031	225	unnamed protein product [Vitis vinifera]	0.822	0.924	0.725	9e-82
224135645	246	predicted protein [Populus trichocarpa]	0.956	0.983	0.638	2e-80
255540905	282	conserved hypothetical protein [Ricinus	0.936	0.840	0.611	5e-74
351721996	234	uncharacterized protein LOC100527136 [Gl	0.802	0.867	0.671	2e-72
21593348	243	unknown [Arabidopsis thaliana]	0.826	0.860	0.621	2e-69
283132361	245	HPP domain containing protein [Lotus jap	0.735	0.759	0.677	3e-69
15241937	243	HPP integral membrane domain-containing	0.826	0.860	0.621	4e-69
357477397	229	HPP domain containing protein [Medicago	0.782	0.864	0.626	3e-68
297815980	252	integral membrane HPP family protein [Ar	0.837	0.841	0.618	4e-68

>gi|225456660|ref|XP_002267093.1| PREDICTED: uncharacterized protein LOC100260399 isoform 1 [Vitis vinifera]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 164/253 (64%), Positives = 187/253 (73%), Gaps = 11/253 (4%)

Query: 1   MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKET 60
           M  Q +A ++ H+   +   P L        S L     +G K +L L  SL  +    T
Sbjct: 1   MGVQLQAYFHHHHSRIMMAQPPLSITCGSSNSLL----FNGKKATLRLDGSLGLH---FT 53

Query: 61  TSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILG 120
           +  I RR+R   + GIVASS NVA P W+ WKP+K S+ PSLSDILWPSAGAFAAMAILG
Sbjct: 54  SRKIDRRRR---DFGIVASS-NVAAPFWDGWKPEKSSAAPSLSDILWPSAGAFAAMAILG 109

Query: 121 KMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPG 180
           KMDQ LA KG S+TIAPLGAVCAVLFATPS+PAARKYN+FM+QIGCAAIGVLAFS+ GPG
Sbjct: 110 KMDQTLASKGISMTIAPLGAVCAVLFATPSSPAARKYNMFMAQIGCAAIGVLAFSLLGPG 169

Query: 181 WLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLI 240
           WLARS  L ASIAFMIY R+ HPPAASLP+LFIDG K H LNFWYALFPGA  CI+LCLI
Sbjct: 170 WLARSTALGASIAFMIYTRSTHPPAASLPLLFIDGAKFHHLNFWYALFPGATACILLCLI 229

Query: 241 QEIVCYLKDNVKF 253
           QE+VCYLK N KF
Sbjct: 230 QEMVCYLKQNFKF 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734031|emb|CBI15278.3| unnamed protein product [Vitis vinifera]

 Score =  309 bits (791), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 156/215 (72%), Positives = 174/215 (80%), Gaps = 7/215 (3%)

Query: 39  LSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSS 98
            +G K +L L  SL  +    T+  I RR+R   + GIVASS NVA P W+ WKP+K S+
Sbjct: 18  FNGKKATLRLDGSLGLH---FTSRKIDRRRR---DFGIVASS-NVAAPFWDGWKPEKSSA 70

Query: 99  NPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYN 158
            PSLSDILWPSAGAFAAMAILGKMDQ LA KG S+TIAPLGAVCAVLFATPS+PAARKYN
Sbjct: 71  APSLSDILWPSAGAFAAMAILGKMDQTLASKGISMTIAPLGAVCAVLFATPSSPAARKYN 130

Query: 159 VFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKL 218
           +FM+QIGCAAIGVLAFS+ GPGWLARS  L ASIAFMIY R+ HPPAASLP+LFIDG K 
Sbjct: 131 MFMAQIGCAAIGVLAFSLLGPGWLARSTALGASIAFMIYTRSTHPPAASLPLLFIDGAKF 190

Query: 219 HSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF 253
           H LNFWYALFPGA  CI+LCLIQE+VCYLK N KF
Sbjct: 191 HHLNFWYALFPGATACILLCLIQEMVCYLKQNFKF 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135645|ref|XP_002322125.1| predicted protein [Populus trichocarpa] gi|222869121|gb|EEF06252.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/257 (63%), Positives = 191/257 (74%), Gaps = 15/257 (5%)

Query: 1   MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKL--PDHPLSGNKRSL-LLGTSLSFNSN 57
           M  Q RASY+ H  + +     + S +  + S    P    S NK +L  L   LSF S+
Sbjct: 1   MGMQVRASYHHHQNACMPPTLPVPSTALSLCSSSLSPFIRSSSNKINLERLSPGLSFFSS 60

Query: 58  KETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKG-SSNPSLSDILWPSAGAFAAM 116
           K T +          +HG+VASS NV+ P+W+SWKP    +S+PS SDI WPSAGAFAAM
Sbjct: 61  KITRT----------KHGVVASS-NVSAPLWDSWKPDNTPASSPSFSDIFWPSAGAFAAM 109

Query: 117 AILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSI 176
           AI GKMDQILAPKG S+TIAPLGAV AVLF TPS+P ARKYN+FM+QIGCAAIGV+AFS+
Sbjct: 110 AIFGKMDQILAPKGISMTIAPLGAVSAVLFVTPSSPGARKYNMFMAQIGCAAIGVIAFSL 169

Query: 177 FGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCII 236
           FGP WLARS  LAASIAFM+Y R+ HPPAASLP+LFIDG + H LNFWYALFPGAAGCII
Sbjct: 170 FGPSWLARSVALAASIAFMVYTRSTHPPAASLPLLFIDGARFHHLNFWYALFPGAAGCII 229

Query: 237 LCLIQEIVCYLKDNVKF 253
           LCLIQEIVCYLKDN+KF
Sbjct: 230 LCLIQEIVCYLKDNLKF 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540905|ref|XP_002511517.1| conserved hypothetical protein [Ricinus communis] gi|223550632|gb|EEF52119.1| conserved hypothetical protein [Ricinus communis]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 156/255 (61%), Positives = 176/255 (69%), Gaps = 18/255 (7%)

Query: 1   MSTQFRASYYQHNGSSITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKET 60
           M  Q  A+YYQH        P+L    S   + L   P+ G   S L         +   
Sbjct: 1   MGMQVAANYYQHK---CFMTPTLLPIPSPKFTSLRFSPILGASSSFLDFKKKVLQKSVGF 57

Query: 61  TSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSN-PSLSDILWPSAGAFAAMAIL 119
           +S   R++  N    +VASSSNVA P W SW P+K SS+ PS SDI WPSAGAFAAMAIL
Sbjct: 58  SSFQDRKRSSNGRTAVVASSSNVAAPFWGSWMPEKTSSSAPSFSDIFWPSAGAFAAMAIL 117

Query: 120 GKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGP 179
           G++DQILAPKG S+TIAPLGAVCAVLFATPS+PAA+KYN+FM+QIGCAAIGVLAFSI GP
Sbjct: 118 GRIDQILAPKGISMTIAPLGAVCAVLFATPSSPAAQKYNMFMAQIGCAAIGVLAFSICGP 177

Query: 180 GWLARSAGLAASIAFMIYARAPHPP--------------AASLPILFIDGVKLHSLNFWY 225
           GW ARSA LAASIAFMI  R+ HPP              AASLP+LFIDGVKLH LNFWY
Sbjct: 178 GWFARSAALAASIAFMISTRSTHPPGSHSELLLFMNQRLAASLPLLFIDGVKLHHLNFWY 237

Query: 226 ALFPGAAGCIILCLI 240
           ALFPGAAGCIILCLI
Sbjct: 238 ALFPGAAGCIILCLI 252

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721996|ref|NP_001235437.1| uncharacterized protein LOC100527136 [Glycine max] gi|255631634|gb|ACU16184.1| unknown [Glycine max]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/207 (67%), Positives = 162/207 (78%), Gaps = 4/207 (1%)

Query: 50  TSLSFNSNKETTSVI--RRRKRKNFEHGIVASSSNVATP-IWESWKPQKGSSNPSLSDIL 106
           +SL FN+  +   ++     K +   HGIVASS NVA+P IW+ WKP K  S PSLSDIL
Sbjct: 29  SSLCFNTFIKHKGLVLDSNHKGRRRGHGIVASS-NVASPSIWDDWKPVKAPSTPSLSDIL 87

Query: 107 WPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGC 166
           WPSAGAFAAMAILGKMDQ+LAPKG SI  AP GAV  +LFATP+ P ARKYNVFM+QIGC
Sbjct: 88  WPSAGAFAAMAILGKMDQLLAPKGLSIAFAPFGAVSTILFATPTAPTARKYNVFMAQIGC 147

Query: 167 AAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYA 226
           AAIGVLA +IFGPGWLARSA +AAS+A+MI   + HPPAAS+P+LFIDG K H LNFWYA
Sbjct: 148 AAIGVLALTIFGPGWLARSASIAASVAYMIITNSVHPPAASMPLLFIDGPKFHHLNFWYA 207

Query: 227 LFPGAAGCIILCLIQEIVCYLKDNVKF 253
           LFPGAA C +L ++QE+V YLK N KF
Sbjct: 208 LFPGAAACTLLTMVQEVVVYLKKNFKF 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593348|gb|AAM65297.1| unknown [Arabidopsis thaliana]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/214 (62%), Positives = 171/214 (79%), Gaps = 5/214 (2%)

Query: 42  NKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPS 101
           ++ SL + T   F    +T + +  R+R +    +VAS+ N+  P W+SWKP K ++  +
Sbjct: 33  SRHSLGISTYDEFLKQIKTPATVNHRRRVS---TVVASAGNLTAPSWDSWKPDKTAAATA 89

Query: 102 L--SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNV 159
           L  SD++WP+AGAFAAMA+LG+MDQ+L+PKG S+++APLGAV A+LF TPS PAARKYN+
Sbjct: 90  LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAILFITPSAPAARKYNI 149

Query: 160 FMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLH 219
           F++QIGCAAIGV+AFS+FGPGWLARS  LAASIAFM+  RA HPPAASLP++FIDG K H
Sbjct: 150 FLAQIGCAAIGVVAFSVFGPGWLARSVALAASIAFMVITRANHPPAASLPLMFIDGAKFH 209

Query: 220 SLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF 253
            LNFWYALFPGAA C+ILCL+Q IVCYLK+N+KF
Sbjct: 210 HLNFWYALFPGAAACVILCLLQSIVCYLKENMKF 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283132361|dbj|BAI63586.1| HPP domain containing protein [Lotus japonicus] gi|388512863|gb|AFK44493.1| unknown [Lotus japonicus]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 126/186 (67%), Positives = 152/186 (81%)

Query: 68  KRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILA 127
           KR+  +H I ASS   +  IW+ WKP K SS PS S+ILWPSAGAF AMA+LGK+DQ+LA
Sbjct: 60  KRRRGQHVIQASSEFASQSIWDDWKPPKASSTPSFSEILWPSAGAFVAMAMLGKLDQLLA 119

Query: 128 PKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAG 187
           PKG SIT APLGAV A+LFATP+ P+ARKY++FMSQIGCA IGVLA +IFGPG LA+SA 
Sbjct: 120 PKGLSITTAPLGAVSALLFATPNAPSARKYSIFMSQIGCAVIGVLALTIFGPGLLAKSAS 179

Query: 188 LAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYL 247
           +AA +A+MIY    HPPA ++P++FIDGVKLH LNFWYAL+PGAA CI+LCLI+E+V YL
Sbjct: 180 VAACVAYMIYTGTVHPPAVAMPLIFIDGVKLHHLNFWYALYPGAACCILLCLIKEVVLYL 239

Query: 248 KDNVKF 253
           K N KF
Sbjct: 240 KQNFKF 245

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241937|ref|NP_201078.1| HPP integral membrane domain-containing protein [Arabidopsis thaliana] gi|26449514|dbj|BAC41883.1| unknown protein [Arabidopsis thaliana] gi|124301076|gb|ABN04790.1| At5g62720 [Arabidopsis thaliana] gi|332010264|gb|AED97647.1| HPP integral membrane domain-containing protein [Arabidopsis thaliana]

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/214 (62%), Positives = 171/214 (79%), Gaps = 5/214 (2%)

Query: 42  NKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPS 101
           ++ SL + T   F    +T + +  R+R +    +VAS+ N+  P W+SWKP K ++  +
Sbjct: 33  SRHSLGISTYDEFLKQIKTPATVNHRRRVS---TVVASAGNLTAPSWDSWKPDKTAAATA 89

Query: 102 L--SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNV 159
           L  SD++WP+AGAFAAMA+LG+MDQ+L+PKG S+++APLGAV A+LF TPS PAARKYN+
Sbjct: 90  LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAILFITPSAPAARKYNI 149

Query: 160 FMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLH 219
           F++QIGCAAIGV+AFS+FGPGWLARS  LAASIAFM+  RA HPPAASLP++FIDG K H
Sbjct: 150 FLAQIGCAAIGVVAFSVFGPGWLARSVALAASIAFMVITRANHPPAASLPLMFIDGAKFH 209

Query: 220 SLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF 253
            LNFWYALFPGAA C+ILCL+Q IVCYLK+N+KF
Sbjct: 210 HLNFWYALFPGAAACVILCLLQSIVCYLKENMKF 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477397|ref|XP_003608984.1| HPP domain containing protein [Medicago truncatula] gi|355510039|gb|AES91181.1| HPP domain containing protein [Medicago truncatula]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/206 (62%), Positives = 162/206 (78%), Gaps = 8/206 (3%)

Query: 53  SFNSNKETTSVIRR----RKRKNFEHGIVASSSNVATP-IWESWKPQKGSSNPSLSDILW 107
           SF   K+   ++      + R+N    ++ +SS+VA+P IWE+ KP K SS  SLSDILW
Sbjct: 27  SFTPKKKNKRLVLDYLGLKGRRNL---LIKASSDVASPSIWENLKPPKSSSTHSLSDILW 83

Query: 108 PSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCA 167
           PSAGAFAAMAILGK+DQ+L PKG SIT+APLGAV A+LFA+PS P+ARKY++FM+QIGCA
Sbjct: 84  PSAGAFAAMAILGKLDQLLTPKGLSITVAPLGAVSALLFASPSAPSARKYSMFMAQIGCA 143

Query: 168 AIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYAL 227
           AIGVLAF+IFGPG LA+SA +AA IA+MIY  + HPPA S+P+LFID +K   L+FWY L
Sbjct: 144 AIGVLAFAIFGPGLLAKSASVAACIAYMIYTDSVHPPAVSMPLLFIDAIKFQQLSFWYVL 203

Query: 228 FPGAAGCIILCLIQEIVCYLKDNVKF 253
           +PG AGCI+LCLIQE+V Y+K N KF
Sbjct: 204 YPGVAGCILLCLIQEVVLYMKQNFKF 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815980|ref|XP_002875873.1| integral membrane HPP family protein [Arabidopsis lyrata subsp. lyrata] gi|297321711|gb|EFH52132.1| integral membrane HPP family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 170/223 (76%), Gaps = 11/223 (4%)

Query: 41  GNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPI----------WES 90
           G KR   LG S S++   + +    R  R +     V+ S+ V+ P+          WE+
Sbjct: 31  GFKRHNFLGVS-SYDLCIDESVRHMRSLRSSSNRWPVSKSAGVSMPVASSDDFPAVSWET 89

Query: 91  WKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPS 150
           WKP+K +  PSLSD++WP+AGAFAAMAILG++DQ+L P+G S+++APLGAV A+LF TPS
Sbjct: 90  WKPEKTTVAPSLSDVIWPAAGAFAAMAILGRIDQMLNPRGISMSVAPLGAVSAILFITPS 149

Query: 151 TPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPI 210
           +PAARKYN+F +QIGCAAIGVLAFS+FGPGWLARS  LAASIAFM+  RA HPPAASLP+
Sbjct: 150 SPAARKYNMFTAQIGCAAIGVLAFSVFGPGWLARSTALAASIAFMVITRANHPPAASLPL 209

Query: 211 LFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF 253
           LFIDG KLH LNFWYALFPGAA CI+LC +QEIVCYLK+N KF
Sbjct: 210 LFIDGAKLHKLNFWYALFPGAAACILLCFLQEIVCYLKENFKF 252

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2170673	243	AT5G62720 "AT5G62720" [Arabido	0.826	0.860	0.621	6.7e-72
TAIR|locus:2097945	252	AT3G47980 "AT3G47980" [Arabido	0.901	0.904	0.6	8e-69
UNIPROTKB|Q481P2	152	CPS_2511 "HPP family protein"	0.517	0.861	0.297	3.5e-11
TIGR_CMR|CPS_2511	152	CPS_2511 "HPP family protein"	0.517	0.861	0.297	3.5e-11
UNIPROTKB|Q81UC5	184	BAS0895 "Uncharacterized prote	0.624	0.858	0.252	5.8e-09
UNIPROTKB|Q8EH38	159	SO_1392 "Membrane protein, HPP	0.557	0.886	0.269	5.8e-09
TIGR_CMR|BA_0953	184	BA_0953 "conserved hypothetica	0.624	0.858	0.252	5.8e-09
TIGR_CMR|SO_1392	159	SO_1392 "conserved hypothetica	0.557	0.886	0.269	5.8e-09
DICTYBASE|DDB_G0273707	311	DDB_G0273707 "HPP family prote	0.750	0.610	0.209	1.7e-06
DICTYBASE|DDB_G0273361	311	DDB_G0273361 "HPP family prote	0.750	0.610	0.209	1.7e-06

TAIR|locus:2170673 AT5G62720 "AT5G62720" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 133/214 (62%), Positives = 171/214 (79%)

Query:    42 NKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPS 101
             ++ SL + T   F    +T + +  R+R +    +VAS+ N+  P W+SWKP K ++  +
Sbjct:    33 SRHSLGISTYDEFLKQIKTPATVNHRRRVST---VVASAGNLTAPSWDSWKPDKTAAATA 89

Query:   102 L--SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNV 159
             L  SD++WP+AGAFAAMA+LG+MDQ+L+PKG S+++APLGAV A+LF TPS PAARKYN+
Sbjct:    90 LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAILFITPSAPAARKYNI 149

Query:   160 FMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLH 219
             F++QIGCAAIGV+AFS+FGPGWLARS  LAASIAFM+  RA HPPAASLP++FIDG K H
Sbjct:   150 FLAQIGCAAIGVVAFSVFGPGWLARSVALAASIAFMVITRANHPPAASLPLMFIDGAKFH 209

Query:   220 SLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF 253
              LNFWYALFPGAA C+ILCL+Q IVCYLK+N+KF
Sbjct:   210 HLNFWYALFPGAAACVILCLLQSIVCYLKENMKF 243

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2097945 AT3G47980 "AT3G47980" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 144/240 (60%), Positives = 173/240 (72%)

Query:    23 LHSCSSFIISKLPDHPLSGNKRSLLLGTS---LSFNSNKETTSVIR---RRKRKNFEHGI 76
             LHS  + II   P     G KR   LG S   L  + +      +R    R+R +   G+
Sbjct:    16 LHS-RNLIIP--PSMVTVGFKRHHFLGVSSYGLCIDESVRHMRSLRSSSNRRRVSKSAGV 72

Query:    77 ---VASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSI 133
                VASS +     WESWKP+K +  PSLSD++WP+AGAFAAMAI+G++DQ+L PKG S+
Sbjct:    73 SMPVASSDDFPAVSWESWKPEKTTVAPSLSDVIWPAAGAFAAMAIMGRIDQMLNPKGISM 132

Query:   134 TIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIA 193
             ++APLGAV A+LF TPS PAARKYN+F +QIGCAAIGVLAFS FGP WLARS  LAASIA
Sbjct:   133 SVAPLGAVSAILFTTPSAPAARKYNMFTAQIGCAAIGVLAFSAFGPSWLARSTALAASIA 192

Query:   194 FMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF 253
             FM+  RA HPPAASLP+LFIDG KLH LNFWYALFPGAA CI+LC +Q IV YLK+N+KF
Sbjct:   193 FMVITRANHPPAASLPLLFIDGAKLHKLNFWYALFPGAAACILLCFLQAIVGYLKENLKF 252

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q481P2 CPS_2511 "HPP family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 155 (59.6 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 42/141 (29%), Positives = 72/141 (51%)

Query:   111 GAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIG 170
             GAF A+ +L  M+ IL     ++ +AP GA   ++F  P +P A+  NV +     A IG
Sbjct:    13 GAFLAIGLLSYMEAILGD--VALLMAPFGATAVLVFGVPDSPLAQPKNVILGHFITAFIG 70

Query:   171 VLAFSIFG--PGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALF 228
             V+     G  P  LA + GL   +  M+ ++  HPPA + PIL    + L +  + + + 
Sbjct:    71 VVFVQYVGVTPLTLALATGLG--VTAMLASKTTHPPAGANPIL----IMLSAQGWGFLIT 124

Query:   229 PGAAGCIILCLIQEIVCYLKD 249
             P   G +I+ L+ + +  L++
Sbjct:   125 PVLIGAVIIVLVGKALRMLQN 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_2511 CPS_2511 "HPP family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 155 (59.6 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 42/141 (29%), Positives = 72/141 (51%)

Query:   111 GAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIG 170
             GAF A+ +L  M+ IL     ++ +AP GA   ++F  P +P A+  NV +     A IG
Sbjct:    13 GAFLAIGLLSYMEAILGD--VALLMAPFGATAVLVFGVPDSPLAQPKNVILGHFITAFIG 70

Query:   171 VLAFSIFG--PGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALF 228
             V+     G  P  LA + GL   +  M+ ++  HPPA + PIL    + L +  + + + 
Sbjct:    71 VVFVQYVGVTPLTLALATGLG--VTAMLASKTTHPPAGANPIL----IMLSAQGWGFLIT 124

Query:   229 PGAAGCIILCLIQEIVCYLKD 249
             P   G +I+ L+ + +  L++
Sbjct:   125 PVLIGAVIIVLVGKALRMLQN 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81UC5 BAS0895 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 136 (52.9 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 43/170 (25%), Positives = 77/170 (45%)

Query:    76 IVASSSNVATPIWESW-KPQKGSS-NP---SLSDILWPSAGAFAAMAILGKMDQILAPKG 130
             I A+    A PI   +    KG   +P   ++ D L    G F  +  L  +  I + + 
Sbjct:     4 ITAAKQKEAPPISVRYFAKMKGKGRSPLQVNIKDSLTGLLGGFLTILTLTYLTSITSTE- 62

Query:   131 FSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAA 190
               + +AP GA C + F   + P ++  N+    +    IG+  + +FG  +   +  +  
Sbjct:    63 --LLMAPFGASCVLAFGVWNAPLSQPRNIIGGHLISTFIGLSIYHLFGNEYWTIALAVGM 120

Query:   191 SIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLI 240
             SIA M+  R  HPPA + PI+ I    L + ++ Y + P   G +++ +I
Sbjct:   121 SIAIMMLTRTTHPPAGADPIVVI----LEAYSWSYLVTPVLVGSLVIVVI 166

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EH38 SO_1392 "Membrane protein, HPP family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 136 (52.9 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 41/152 (26%), Positives = 72/152 (47%)

Query:    99 NP-SLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKY 157
             NP +L   L    GA   ++ L  ++Q L P+   + +AP GA   +LFA P +P A+  
Sbjct:     5 NPQNLKMALLAGCGAMLCISSLAALEQ-LTPQTIWL-MAPFGATMVLLFALPESPLAQPR 62

Query:   158 NVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVK 217
             N+    +  + +G++  +  G   L     +   IA M+     HPPA + P++    V 
Sbjct:    63 NILCGHLLTSLVGLIILNTLGVSPLTLGLAVGLGIAVMMLTHTVHPPAGANPLV----VM 118

Query:   218 LHSLNFWYALFPGAAG-CIILC---LIQEIVC 245
             L + ++ +   P A+G  +IL    L   ++C
Sbjct:   119 LTAQHWDFLYMPVASGVALILAFGWLYHNLLC 150

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0953 BA_0953 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 136 (52.9 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 43/170 (25%), Positives = 77/170 (45%)

Query:    76 IVASSSNVATPIWESW-KPQKGSS-NP---SLSDILWPSAGAFAAMAILGKMDQILAPKG 130
             I A+    A PI   +    KG   +P   ++ D L    G F  +  L  +  I + + 
Sbjct:     4 ITAAKQKEAPPISVRYFAKMKGKGRSPLQVNIKDSLTGLLGGFLTILTLTYLTSITSTE- 62

Query:   131 FSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAA 190
               + +AP GA C + F   + P ++  N+    +    IG+  + +FG  +   +  +  
Sbjct:    63 --LLMAPFGASCVLAFGVWNAPLSQPRNIIGGHLISTFIGLSIYHLFGNEYWTIALAVGM 120

Query:   191 SIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLI 240
             SIA M+  R  HPPA + PI+ I    L + ++ Y + P   G +++ +I
Sbjct:   121 SIAIMMLTRTTHPPAGADPIVVI----LEAYSWSYLVTPVLVGSLVIVVI 166

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1392 SO_1392 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 136 (52.9 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 41/152 (26%), Positives = 72/152 (47%)

Query:    99 NP-SLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKY 157
             NP +L   L    GA   ++ L  ++Q L P+   + +AP GA   +LFA P +P A+  
Sbjct:     5 NPQNLKMALLAGCGAMLCISSLAALEQ-LTPQTIWL-MAPFGATMVLLFALPESPLAQPR 62

Query:   158 NVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVK 217
             N+    +  + +G++  +  G   L     +   IA M+     HPPA + P++    V 
Sbjct:    63 NILCGHLLTSLVGLIILNTLGVSPLTLGLAVGLGIAVMMLTHTVHPPAGANPLV----VM 118

Query:   218 LHSLNFWYALFPGAAG-CIILC---LIQEIVC 245
             L + ++ +   P A+G  +IL    L   ++C
Sbjct:   119 LTAQHWDFLYMPVASGVALILAFGWLYHNLLC 150

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0273707 DDB_G0273707 "HPP family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 41/196 (20%), Positives = 79/196 (40%)

Query:    55 NSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKP-QKGSSNPSLSDILWPSAGAF 113
             N+N          K KN +  I+ S        ++ WK  +K      L +I W    +F
Sbjct:   102 NNNNNNNKNENNNKIKNEKINILLSIKLYFIQYFKKWKGGEKSPVRADLEEIGWSWLSSF 161

Query:   114 AAMAILGKMD-QILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIG-- 170
               + +L  +  ++   K     +    A   ++F  P +P A+  N+ +  I  A +G  
Sbjct:   162 IGILVLALLHYRVTVEKETIFLLGSFAASAVLIFGAPKSPLAQPRNLVLGHIVSATVGSI 221

Query:   171 VLAFSIFGPGWLARSAGLAASIAF--MIYARAPHPPAASLPILFIDGVKLHSLNFWYALF 228
             +    ++       +  LA S+A   M + ++ HPP  +  ++ +   +     F+Y   
Sbjct:   222 IRVALVYTNAQTEVACALAVSLAIVGMHFTKSIHPPGGATALICVMSAEQRWRGFYYIFV 281

Query:   229 PGAAGCIILCLIQEIV 244
             P A+G + + L   IV
Sbjct:   282 PVASGSLTMLLTALIV 297

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0273361 DDB_G0273361 "HPP family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 41/196 (20%), Positives = 79/196 (40%)

Query:    55 NSNKETTSVIRRRKRKNFEHGIVASSSNVATPIWESWKP-QKGSSNPSLSDILWPSAGAF 113
             N+N          K KN +  I+ S        ++ WK  +K      L +I W    +F
Sbjct:   102 NNNNNNNKNENNNKIKNEKINILLSIKLYFIQYFKKWKGGEKSPVRADLEEIGWSWLSSF 161

Query:   114 AAMAILGKMD-QILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIG-- 170
               + +L  +  ++   K     +    A   ++F  P +P A+  N+ +  I  A +G  
Sbjct:   162 IGILVLALLHYRVTVEKETIFLLGSFAASAVLIFGAPKSPLAQPRNLVLGHIVSATVGSI 221

Query:   171 VLAFSIFGPGWLARSAGLAASIAF--MIYARAPHPPAASLPILFIDGVKLHSLNFWYALF 228
             +    ++       +  LA S+A   M + ++ HPP  +  ++ +   +     F+Y   
Sbjct:   222 IRVALVYTNAQTEVACALAVSLAIVGMHFTKSIHPPGGATALICVMSAEQRWRGFYYIFV 281

Query:   229 PGAAGCIILCLIQEIV 244
             P A+G + + L   IV
Sbjct:   282 PVASGSLTMLLTALIV 297

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam04982	120	pfam04982, HPP, HPP family	3e-20
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	1e-11

>gnl|CDD|218360 pfam04982, HPP, HPP family

 Score = 82.5 bits (205), Expect = 3e-20
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 135 IAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAF 194
           IAP GA   +LFA P++P A+  NV    +  A IGV    +FG    A +  +  +IA 
Sbjct: 3   IAPFGASAVLLFAVPASPLAQPRNVIGGHLLSALIGVAVAKLFGDPLWAAALAVGLAIAL 62

Query: 195 MIYARAPHPPAASLPIL-FIDGVKLHSLNFWYALFPGAAGCIILCLI 240
           M   R  HPPA +  +L  + G    +L + + L P   G ++L L+
Sbjct: 63  MQLTRTLHPPAGATALLAVLGG---PALGYGFLLVPVLLGSLLLVLV 106

These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters. Length = 120

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 100 PSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNV 159
             L   +    G        G +  +       + +AP+GA   +LFA P++P A+ +++
Sbjct: 27  ERLRAAIGALIGILLTGLACGYV--LGVDPNLPLLVAPMGASAVLLFAVPASPLAQPWSI 84

Query: 160 FMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPP--AASLPILFIDGVK 217
               +  A +GV      G   LA    ++ +I  M   R  HPP  A +L  + + G  
Sbjct: 85  IGGNLVAALVGVTVAYFVGDPVLASGLAVSLAIGAMFALRCLHPPSGAVALTAV-LGGPA 143

Query: 218 LHSLNFWYALFPGAAGCIIL 237
           +H L + + L+P A   +IL
Sbjct: 144 VHRLGYNFVLWPVALNSLIL 163

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
COG3448	382	CBS-domain-containing membrane protein [Signal tra	100.0
PF04982	120	HPP: HPP family; InterPro: IPR007065 These protein	100.0
PF06081	141	DUF939: Bacterial protein of unknown function (DUF	95.99
COG4129	332	Predicted membrane protein [Function unknown]	95.49
PF04632	650	FUSC: Fusaric acid resistance protein family; Inte	80.84

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-42  Score=320.96  Aligned_cols=163  Identities=23%  Similarity=0.411  Sum_probs=151.1

Q ss_pred             hhHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc--CCCceEEecchhhhHhHHhcCCCCCCccchhhhhhh
Q 025435           86 PIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILA--PKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQ  163 (253)
Q Consensus        86 ~~~~~~~p~~~~~~~~~~d~l~a~lGaflgI~il~~l~~~~~--~~~~plLiasfGASAVLlF~~P~SPlAQPrNvigGH  163 (253)
                      .|++.+.|...+.  .++|.+++.+|+++|+++.+.+..+..  +...|++++||||||||+|++|+||+|||||+||||
T Consensus        11 ~wfk~f~P~~~~v--~~rerl~~~~gA~iGilltg~~c~~~~~~~~~lpllvAPmGASAVLLFavpaSPLAQPwsiiGGN   88 (382)
T COG3448          11 YWFKLFHPLTAPV--RLRERLRAAIGALIGILLTGLACGYVLGVDPNLPLLVAPMGASAVLLFAVPASPLAQPWSIIGGN   88 (382)
T ss_pred             HHHHhcCcccCCC--CcHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccCcceEEEEeccCCccccchhhhcch
Confidence            3555588877666  669999999999999999999888744  346799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCCCCCCCcceee-eeccccccccCchhhHHHHHHHHHHHHHHHH
Q 025435          164 IGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPIL-FIDGVKLHSLNFWYALFPGAAGCIILCLIQE  242 (253)
Q Consensus       164 llSAliGv~~~~lfg~~wlAaALAValAI~~M~ltrtvHPPAGAtALi-vl~~~~~~~lgw~fvl~PVl~gsllLl~vAl  242 (253)
                      ++||++|+.+.+++|++.+++++||+++|..|+.+||+|||+||.||. +++|+.++++||+|++.||+.++++|+.+|+
T Consensus        89 lvaAlvgvtva~~vgd~~la~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~  168 (382)
T COG3448          89 LVAALVGVTVAYFVGDPVLASGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLAL  168 (382)
T ss_pred             HHHHHHhhhhhhhhCChHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999 6888999999999999999999999999999


Q ss_pred             HHhhcccC
Q 025435          243 IVCYLKDN  250 (253)
Q Consensus       243 l~NNL~~~  250 (253)
                      +|||+.||
T Consensus       169 lynnl~~r  176 (382)
T COG3448         169 LYNNLTRR  176 (382)
T ss_pred             HHHHHhcC
Confidence            99998775

>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices

Probab=100.00  E-value=1.2e-37  Score=253.61  Aligned_cols=118  Identities=30%  Similarity=0.543  Sum_probs=110.8

Q ss_pred             EEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCCCCCCCcceeee
Q 025435          133 ITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILF  212 (253)
Q Consensus       133 lLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~lfg~~wlAaALAValAI~~M~ltrtvHPPAGAtALiv  212 (253)
                      ++++||||||+|+|+.|++|+|||||+++||++++++|+++.+++|+.||++++|+++++++|.++||+||||||||+++
T Consensus         1 ll~~s~gAsa~llf~~p~sp~aqP~~vi~gh~isa~iG~~~~~~~~~~~~~~alav~lai~~M~~~~~~HPPA~Atall~   80 (120)
T PF04982_consen    1 LLLPSFGASAVLLFGAPSSPLAQPRNVIGGHLISALIGVLCVYLFGDPWWAAALAVGLAIVLMVLTRTVHPPAGATALLA   80 (120)
T ss_pred             CccccHHHHHHHhhcCCCCchhchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             eccccccccCchhhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 025435          213 IDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF  253 (253)
Q Consensus       213 l~~~~~~~lgw~fvl~PVl~gsllLl~vAll~NNL~~~r~~  253 (253)
                      +.++..  +||+|++.||++|+++++.+++++||+.+ |+|
T Consensus        81 ~l~~~~--~~~~~~~~pVl~g~~il~~~a~~~~~l~~-r~Y  118 (120)
T PF04982_consen   81 VLGGAS--LGWGFVLIPVLLGSLILVVVALLFNNLIR-RRY  118 (120)
T ss_pred             hhcccc--cCchHHHHHHHHHHHHHHHHHHHHHcCcc-CCC
Confidence            444332  68999999999999999999999999998 777

The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.

>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=95.99  E-value=0.017  Score=48.18  Aligned_cols=133  Identities=19%  Similarity=0.154  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHHhCchHHH
Q 025435          104 DILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLA  183 (253)
Q Consensus       104 d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~lfg~~wlA  183 (253)
                      ..+.+.+++++++.+..++..     +. -..++++|--.+- .+-+.-+-+=++-+.|+++++++|..+..++|++||+
T Consensus         6 r~iKtaiA~~la~~ia~~l~~-----~~-~~~A~i~Ail~~q-~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~   78 (141)
T PF06081_consen    6 RTIKTAIAAFLAILIAQLLGL-----QY-PFFAPIAAILSMQ-PTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLS   78 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC-----Cc-hHHHHHHHhheee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            456778888888888766521     21 2344444432221 1222335667889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCC--CCCCcceeeeeccccccccCchhhHHHHHHHHHHHHHHHHHHhhc
Q 025435          184 RSAGLAASIAFMIYARAPH--PPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYL  247 (253)
Q Consensus       184 aALAValAI~~M~ltrtvH--PPAGAtALivl~~~~~~~lgw~fvl~PVl~gsllLl~vAll~NNL  247 (253)
                      .++.+.+.+.....+|.-+  .++..+.+..+..++   .+|.|++.= ....++=+.+|+++|.+
T Consensus        79 ~~l~v~i~i~~~~~l~~~~~~~~a~v~~~~i~~~~~---~~~~~~~~r-~l~t~iG~~va~lVN~~  140 (141)
T PF06081_consen   79 IGLAVIITIPICNWLKLGEGIIVAAVTFVHILLSGS---DSFSYALNR-VLLTLIGIGVALLVNLL  140 (141)
T ss_pred             HHHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHcCC---ccHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            9999999999999999864  223332222333332   345553322 23455555678888875

>COG4129 Predicted membrane protein [Function unknown]

Probab=95.49  E-value=0.076  Score=50.73  Aligned_cols=136  Identities=15%  Similarity=0.105  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCC--CccchhhhhhhHHHHHHHHHHHHHhCch
Q 025435          103 SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTP--AARKYNVFMSQIGCAAIGVLAFSIFGPG  180 (253)
Q Consensus       103 ~d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SP--lAQPrNvigGHllSAliGv~~~~lfg~~  180 (253)
                      ...+.+.+|+++++.+..++..     +.    +-|++-..++---|.-+  +=+=++.+.|+.+++++|+++..++|..
T Consensus        11 ~RtlKt~ia~~La~~ia~~l~~-----~~----~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~   81 (332)
T COG4129          11 ARTLKTGLAAGLALLIAHLLGL-----PQ----PAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQN   81 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-----Cc----hHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            5667888888888887764432     22    22333333333333222  3355788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCcceee--eeccccccccCchhhHHHHHHHHHHHHHHHHHHhhcccCC
Q 025435          181 WLARSAGLAASIAFMIYARAPHPPAASLPIL--FIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNV  251 (253)
Q Consensus       181 wlAaALAValAI~~M~ltrtvHPPAGAtALi--vl~~~~~~~lgw~fvl~PVl~gsllLl~vAll~NNL~~~r  251 (253)
                      .++.++.+.+.|.++..++-.++=..++.++  ++.+..    +-.+..+-=++...+=+.+|.++|.+....
T Consensus        82 ~~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~----~~~~~~~~r~l~~~vG~~~a~lvn~~~~~~  150 (332)
T COG4129          82 PIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAM----IPLFLIFNRFLLVFVGVGVAFLVNLVMPPP  150 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcc----cchhHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence            9999999999999999999888655555444  232221    212221113334444455678888765543

>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate

Probab=80.84  E-value=11  Score=37.62  Aligned_cols=110  Identities=20%  Similarity=0.137  Sum_probs=70.8

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHH
Q 025435           97 SSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSI  176 (253)
Q Consensus        97 ~~~~~~~d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~l  176 (253)
                      +...++.+.+++.+-+++++.+.+.+=.+. +...-....-+.+-..-+|++-+.|.-..+..+.|.++++++|..+..+
T Consensus       331 ~~~~d~~~A~~~alra~la~~~~~l~Wi~t-~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~  409 (650)
T PF04632_consen  331 PLHRDWPLALRNALRAFLAILIAGLFWIAT-GWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFF  409 (650)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344577888999999999999887653321 2222223334455555569999999999999999999999999887654


Q ss_pred             h-C--ch--HHHHHHHHHHHHHHHHHhCCCCCCCCccee
Q 025435          177 F-G--PG--WLARSAGLAASIAFMIYARAPHPPAASLPI  210 (253)
Q Consensus       177 f-g--~~--wlAaALAValAI~~M~ltrtvHPPAGAtAL  210 (253)
                      + +  ++  .+...+++.+.+..+.   ..||.-...++
T Consensus       410 vlP~~~~f~~L~l~l~~~l~~~~~~---~~~p~~~~~g~  445 (650)
T PF04632_consen  410 VLPHLDGFPLLALVLAPFLFLGGLL---MARPRTAYIGL  445 (650)
T ss_pred             hhhccCcHHHHHHHHHHHHHHHHHH---HcCchHHHHHH
Confidence            4 2  12  3344444333333332   34677665444

It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00