Citrus Sinensis ID: 025457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWLQTEV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccEEEEEEEEEEccccccEEEEccccccccccEEEEccccEEEEEEEEEEccEEEcccEEEEEEEEccEEEccccccEEEcccccccEEEEccccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccccccccccccccccccccccccccccccccccHccccccccccHHHcccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccEEEEEEEEEEccccccEEcccccHHHHHHcEEEEEcccEEEEEEEEEEccccEEEEEEEEEEEEccEEEEEEEEEEEEEccccccEEEEcccEEccccccccEEEEEEEEEEcccccccEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mslavgvdsssknmglddkdksnksevsgetmpktppneenvdeqsggmsrqmsensisvtedeeddedrkielgpqytlkeqfekdkddESLRRWKEQLLGsvdfesvgeslEPEVKILSLAiktpsrpdivlsvpengrpkgswftlkegsrysLQFSFQVRNNIVSGLKYTNTVWktglkvdstkmmlgtfspqaepytqelpedttpsgffargsysakskfvdddnkcyleINYTFDIGKEWLQTEV
Flexible Loop (DISEMBL)
mslavgvdsssknmglddkdksnksevsgetmpktppneenvdeqsggmsrqmsensisvtedeeddedrkielgpqytlkeqfekdkddeslRRWKEQLlgsvdfesvgeslEPEVKILSlaiktpsrpdivlsvpengrpkgSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAkskfvdddnKCYLEINYTFDIGKEWLQTEV
Low Complexity Region (SEG)
MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTedeeddedRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWLQTEV
Disordered region (IsUnstruct)
***************************************************************************************************LLGSVDF*********EVKILSLAIKT****DIVLSV******KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG**********************FARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWL****
Disordered Region (DISOPRED)
********************************************************************************KEQFEKDKDDESLRRWKEQLLGSVD**SV*ESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWL****
Disordered Region (DISEMBL)
*********************************************************************RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWLQTEV
Disordered Region (DISPRO)
*SL****D*************************************************************RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWLQTEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q9SFC6	240	Rho GDP-dissociation inhi	yes	no	0.789	0.829	0.74	1e-86
Q4R4J0	204	Rho GDP-dissociation inhi	N/A	no	0.734	0.906	0.382	4e-27
P52565	204	Rho GDP-dissociation inhi	yes	no	0.734	0.906	0.382	4e-27
P19803	204	Rho GDP-dissociation inhi	yes	no	0.746	0.921	0.377	5e-27
Q5XI73	204	Rho GDP-dissociation inhi	yes	no	0.746	0.921	0.377	7e-27
Q99PT1	204	Rho GDP-dissociation inhi	yes	no	0.746	0.921	0.377	7e-27
Q95UQ1	197	Putative rho GDP-dissocia	yes	no	0.678	0.868	0.363	2e-26
Q61599	200	Rho GDP-dissociation inhi	no	no	0.730	0.92	0.378	2e-26
Q9TU03	200	Rho GDP-dissociation inhi	no	no	0.773	0.975	0.376	5e-26
P52566	201	Rho GDP-dissociation inhi	no	no	0.674	0.845	0.396	5e-25

>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 148/200 (74%), Positives = 174/200 (87%), Gaps = 1/200 (0%)

Query: 48  GMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFE 107
            +SRQMSE+S+  TE+EEDD D K++LGPQYT+KE  EKDKDDESLR+WKEQLLGSVD  
Sbjct: 39  ALSRQMSESSLCATEEEEDD-DSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVT 97

Query: 108 SVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNI 167
           ++GE+L+PEV+I SLAI +P RPDIVL VPENG PKG WFTLKEGS+Y+L+F+F V NNI
Sbjct: 98  NIGETLDPEVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNI 157

Query: 168 VSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFV 227
           VSGL+YTNTVWKTG+KVD  K MLGTFSPQ EPY   +PE+TTPSG FARGSYSA++KF+
Sbjct: 158 VSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFL 217

Query: 228 DDDNKCYLEINYTFDIGKEW 247
           DDDNKCYLEINY+FDI KEW
Sbjct: 218 DDDNKCYLEINYSFDIRKEW 237

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +  +   P V +
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVV 72

Query: 120 LSLAIKTPSRP---DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNT 176
             L +   S P   ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY   
Sbjct: 73  TGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQH 131

Query: 177 VWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLE 236
            ++ G+K+D T  M+G++ P+AE Y    P +  P G  ARGSYS KS+F DDD   +L 
Sbjct: 132 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLS 191

Query: 237 INYTFDIGKEW 247
             +   I K+W
Sbjct: 192 WEWNLTIKKDW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +  +   P V +
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVV 72

Query: 120 LSLAIKTPSRP---DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNT 176
             L +   S P   ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY   
Sbjct: 73  TGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQH 131

Query: 177 VWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLE 236
            ++ G+K+D T  M+G++ P+AE Y    P +  P G  ARGSYS KS+F DDD   +L 
Sbjct: 132 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLS 191

Query: 237 INYTFDIGKEW 247
             +   I K+W
Sbjct: 192 WEWNLTIKKDW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 100/188 (53%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +        V  
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTR 74

Query: 120 LSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK 179
           L+L   T   P  +    +    K   F LKEG  Y ++ SF+V   IVSG+KY    ++
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYR 134

Query: 180 TGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINY 239
            G+K+D T  M+G++ P+AE Y    P +  P G  ARGSY+ KS+F DDD   +L   +
Sbjct: 135 KGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEW 194

Query: 240 TFDIGKEW 247
              I KEW
Sbjct: 195 NLTIKKEW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia PE=1 SV=1

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 100/188 (53%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +        V  
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVIVTR 74

Query: 120 LSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK 179
           L+L   T   P  +    +    K   F LKEG  Y ++ SF+V   IVSG+KY    ++
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYR 134

Query: 180 TGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINY 239
            G+K+D T  M+G++ P+AE Y    P +  P G  ARGSY+ KS+F DDD   +L   +
Sbjct: 135 KGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEW 194

Query: 240 TFDIGKEW 247
              I KEW
Sbjct: 195 NLTIKKEW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1 SV=3

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 100/188 (53%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +        V  
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVIVTR 74

Query: 120 LSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK 179
           L+L   T   P  +    +    K   F LKEG  Y ++ SF+V   IVSG+KY    ++
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYR 134

Query: 180 TGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINY 239
            G+K+D T  M+G++ P+AE Y    P +  P G  ARGSY+ KS+F DDD   +L   +
Sbjct: 135 KGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEW 194

Query: 240 TFDIGKEW 247
              I KEW
Sbjct: 195 NLTIKKEW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium discoideum GN=rdiA PE=1 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 8/179 (4%)

Query: 75  GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVL 134
           G   ++ +  ++D +DE+L+R+KE LLG+       +  +  +K + + I+   RPD + 
Sbjct: 17  GKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEMKIQIE--GRPDTIY 74

Query: 135 SVPEN---GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMML 191
            +         K   F LKE   Y +  +F ++++IVSGLK TNTV++ G+KV + K ML
Sbjct: 75  PLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTNTVYRKGIKVSTEKHML 134

Query: 192 GTFSPQAEPYTQELPE---DTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           G+F+PQA  ++   P    +  PSG  ARGSY+AK  F DDDN+ +L + Y F I  +W
Sbjct: 135 GSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDDNEEHLSVEYAFSIKSDW 193

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them (By similarity). Regulates the Rac-dependent signaling pathways controlling cytokinesis, actin reorganization and the contractile vacuole. Required for efficient accumulation of cap at the cell cortex.

Dictyostelium discoideum (taxid: 44689)

>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 62  EDEEDDEDRKIELGP--QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
           E+ +DD D K+   P  Q +LKE  E DKDDESL ++K+ LLG  D   V +   P V +
Sbjct: 11  EEADDDLDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DVPVVADPTVPNVTV 68

Query: 120 LSLAIKTPSRPD-IVLSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
             L++   S P  I + +  +    K   F LKEG  Y ++ +F+V  +IVSGLKY    
Sbjct: 69  TRLSLVCDSAPGPITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHT 128

Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEI 237
           ++TG++VD    M+G++ P+ E Y    P +  P G  ARG+Y  KS F DDD + +L  
Sbjct: 129 YRTGMRVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTW 188

Query: 238 NYTFDIGKEW 247
            +   I K+W
Sbjct: 189 EWNLAIKKDW 198

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 53  MSENSISVTEDEEDDE-DRKIELGP--QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESV 109
           M+E +     +E+DDE D K+   P  Q +LKE  E DKDDESL ++K+ LLG  D   V
Sbjct: 1   MTEKAPEPHVEEDDDELDGKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DGPVV 58

Query: 110 GESLEPEVKILSLAIKTPSRPD-IVLSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNI 167
            +   P V +  L +   S P  I + +  +    K   F LKEG  Y ++ +F+V  +I
Sbjct: 59  ADPTAPNVTVTRLTLVCESAPGPITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDI 118

Query: 168 VSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFV 227
           VSGLKY    ++TG+KVD    M+G++ P+ E Y    P +  P G  ARG+Y  KS F 
Sbjct: 119 VSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFT 178

Query: 228 DDDNKCYLEINYTFDIGKEWLQ 249
           DDD   +L   +   I K+W +
Sbjct: 179 DDDKHDHLTWEWNLSIKKDWTE 200

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1 SV=3

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 4/174 (2%)

Query: 76  PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
           PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct: 28  PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 85

Query: 135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
            +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct: 86  DLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 145

Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           + P+ E Y    P +  P G  ARG+Y  KS F DDD + +L   +   I KEW
Sbjct: 146 YGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEW 199

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
224137328	257	predicted protein [Populus trichocarpa]	0.984	0.964	0.743	1e-102
224089617	243	predicted protein [Populus trichocarpa]	0.936	0.971	0.758	6e-99
356520100	249	PREDICTED: rho GDP-dissociation inhibito	0.976	0.987	0.713	6e-97
449443560	259	PREDICTED: rho GDP-dissociation inhibito	0.968	0.942	0.714	7e-96
255583030	246	Rho GDP-dissociation inhibitor, putative	0.964	0.987	0.719	1e-95
356564466	249	PREDICTED: rho GDP-dissociation inhibito	0.980	0.991	0.709	6e-95
449453577	240	PREDICTED: rho GDP-dissociation inhibito	0.952	1.0	0.708	8e-95
388508888	242	unknown [Lotus japonicus]	0.960	1.0	0.701	3e-94
255559076	243	Rho GDP-dissociation inhibitor, putative	0.916	0.950	0.745	4e-93
359495546	245	PREDICTED: rho GDP-dissociation inhibito	0.956	0.983	0.694	3e-91

>gi|224137328|ref|XP_002322530.1| predicted protein [Populus trichocarpa] gi|222867160|gb|EEF04291.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/257 (74%), Positives = 222/257 (86%), Gaps = 9/257 (3%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEE--NVDE-QSGGMSRQMSENS 57
           MSL  GV+S++K+MG D+K+K   SE +  T  KTPPNEE  NVDE +SGG+SR+MSE+S
Sbjct: 1   MSLEAGVNSNTKSMGFDEKNKEEVSETAATT--KTPPNEEENNVDEPKSGGISRKMSESS 58

Query: 58  ISVTEDEEDD----EDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESL 113
           +  T+ EE+D     +RKIELGPQ TLKEQ EKDKDDESLRRWKEQLLG+VD E+ GE+L
Sbjct: 59  LYGTDQEEEDDEETNERKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGAVDIEAAGETL 118

Query: 114 EPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKY 173
           EPEVKILSL IK+  RPDIVLSVPENG+PKGSWFTLKEGSRYSLQF+F+V+NNIVSGLKY
Sbjct: 119 EPEVKILSLEIKSSGRPDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKY 178

Query: 174 TNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKC 233
           TNTVWKTG+KVDS+K M+GTFSPQ EPYT E+PE+TTPSG FARGSY+A+SKFVDDDNKC
Sbjct: 179 TNTVWKTGIKVDSSKEMIGTFSPQTEPYTHEMPEETTPSGMFARGSYAARSKFVDDDNKC 238

Query: 234 YLEINYTFDIGKEWLQT 250
           YLEINYTFDI K+WL T
Sbjct: 239 YLEINYTFDIRKDWLPT 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089617|ref|XP_002308781.1| predicted protein [Populus trichocarpa] gi|222854757|gb|EEE92304.1| predicted protein [Populus trichocarpa]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 185/244 (75%), Positives = 213/244 (87%), Gaps = 8/244 (3%)

Query: 14  MGLDDKDKSNKSEVSGETMPKTPPNEE-NVDE-QSGGMSRQMSENSISVTEDEED----D 67
           MG D+K+K   SE    T  KTPPNEE NVDE +SGG+SR+MSE+S+  T+ EE+     
Sbjct: 1   MGFDEKNKDEVSETKATT--KTPPNEEHNVDEPKSGGISRKMSESSLYATDQEEEDDDES 58

Query: 68  EDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTP 127
            +RKIELGPQYTLKEQ EKDKDDESLRRWKEQLLG+VD E+VGE+LEPEVKILSL IK+P
Sbjct: 59  HERKIELGPQYTLKEQLEKDKDDESLRRWKEQLLGAVDIEAVGETLEPEVKILSLEIKSP 118

Query: 128 SRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDST 187
            RPDIVLSVPENG+PKGSWFTLKEGSRYSLQF+F+V+NNIVSGLKY+NTVWKTG+KVDS+
Sbjct: 119 GRPDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKYSNTVWKTGVKVDSS 178

Query: 188 KMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           K M+GTFSPQAEPYT E+PE+TTPSG FARGSY+AK+KFVDDDNK YLEINYTFDI K+W
Sbjct: 179 KEMIGTFSPQAEPYTHEMPEETTPSGIFARGSYAAKTKFVDDDNKRYLEINYTFDIRKDW 238

Query: 248 LQTE 251
           L T+
Sbjct: 239 LPTQ 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520100|ref|XP_003528703.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 179/251 (71%), Positives = 205/251 (81%), Gaps = 5/251 (1%)

Query: 1   MSLAVGVDSSSKNMGLDD---KDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENS 57
           MSL +GV S+ K+MG DD   KD       +G+T+     ++E+ DE+   +SR MSE S
Sbjct: 1   MSLDIGVVSNCKSMGFDDDKGKDVPETQHAAGKTV--HAHDDESGDERGTSLSRHMSEGS 58

Query: 58  ISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEV 117
           I+VTEDE++D +R+I+LGPQ TLKEQ EKDKDDESLRRWKEQLLGSVD  SVGESLEPEV
Sbjct: 59  IAVTEDEDEDVERRIDLGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMTSVGESLEPEV 118

Query: 118 KILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
           KILSLAIK   R DIVL +PE+G P G WFTLKEGSRYSL F+FQV +NIVSGLKYTNTV
Sbjct: 119 KILSLAIKAAGREDIVLPIPESGNPSGLWFTLKEGSRYSLMFTFQVSHNIVSGLKYTNTV 178

Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEI 237
           WKTGLKVDSTK M+GTFSPQAEPYT E+PE+TTPSG FARG YSA+SKFVDDDNK YLEI
Sbjct: 179 WKTGLKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGLFARGQYSARSKFVDDDNKLYLEI 238

Query: 238 NYTFDIGKEWL 248
           NYTFDI K+WL
Sbjct: 239 NYTFDIRKDWL 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443560|ref|XP_004139545.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449508966|ref|XP_004163456.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  355 bits (912), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 183/256 (71%), Positives = 210/256 (82%), Gaps = 12/256 (4%)

Query: 1   MSLAVGVDSSSKN--MGLDDKDKSNKSEVSGETMPKTPPNEENVDEQ-------SGGMSR 51
           MS+AV + SSSK   MG D+KDK  K E   ++ PK    ++  DE+       S GM+R
Sbjct: 1   MSVAVEIGSSSKGIIMGFDEKDKDGKQE---DSSPKLLERKKGEDEEQEVDVVPSSGMTR 57

Query: 52  QMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGE 111
           +MSE+SI  TE+E+D++ RKIELGPQYTLKE  EKDKDDESLRRWKEQLLG VDFESVGE
Sbjct: 58  KMSESSICATEEEDDEDGRKIELGPQYTLKELNEKDKDDESLRRWKEQLLGDVDFESVGE 117

Query: 112 SLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGL 171
           +LEP+VKILSLAIK+  RPDIVL VPE+G PKG WFTLKEGSRYSL+F+FQV NNIVSGL
Sbjct: 118 TLEPDVKILSLAIKSSGRPDIVLPVPESGNPKGLWFTLKEGSRYSLKFTFQVSNNIVSGL 177

Query: 172 KYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDN 231
           KYTNTVWKTG+KVDSTK M+GTFSPQ EPY  E+ E+TTPSG FARGSYSA+SKFVDDDN
Sbjct: 178 KYTNTVWKTGVKVDSTKEMIGTFSPQPEPYDHEMQEETTPSGIFARGSYSARSKFVDDDN 237

Query: 232 KCYLEINYTFDIGKEW 247
           KCYLEINYTFDI K+W
Sbjct: 238 KCYLEINYTFDIRKDW 253

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583030|ref|XP_002532283.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223528017|gb|EEF30098.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 182/253 (71%), Positives = 204/253 (80%), Gaps = 10/253 (3%)

Query: 1   MSLAVGVDSSSKNMGLDD-KDKSNKSEVSGETMPKTPPNEENVDEQSG-GMSRQMSENSI 58
           MSLAV   S + NMGLDD K++  KSE S E +       E  D  +G   +RQMSE  +
Sbjct: 1   MSLAVSSSSGTSNMGLDDNKNEEEKSETSHEHL-------EEGDSAAGEKYARQMSETDL 53

Query: 59  SVTEDEEDDE-DRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEV 117
           SV E++ED+E   KIELGPQ TLKE  EKDKDDESLR+WKEQLLGSVDFES+GE+LEPEV
Sbjct: 54  SVNEEDEDEEGSHKIELGPQCTLKEHLEKDKDDESLRKWKEQLLGSVDFESIGETLEPEV 113

Query: 118 KILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
           KILSL+I +P R DIVLSVPE+G+PKGSWFTLKEGS Y+L FSFQV NNIVSGLKYTNTV
Sbjct: 114 KILSLSIISPGRSDIVLSVPEDGKPKGSWFTLKEGSHYNLMFSFQVSNNIVSGLKYTNTV 173

Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEI 237
           WKTG+KVDS K MLGTFSPQ EPYT  +PE+TTPSG FARGSYSAKSKF+DDDNKCYLEI
Sbjct: 174 WKTGVKVDSAKEMLGTFSPQPEPYTHVMPEETTPSGMFARGSYSAKSKFLDDDNKCYLEI 233

Query: 238 NYTFDIGKEWLQT 250
           NYTFDI KEW  T
Sbjct: 234 NYTFDIRKEWAAT 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564466|ref|XP_003550475.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max]

 Score =  352 bits (904), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 176/248 (70%), Positives = 197/248 (79%), Gaps = 1/248 (0%)

Query: 1   MSLAVGVDSSSK-NMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSIS 59
           MSLA+GV S+ K NMG DD       E+           +E+ DE+   +SR MSE SI+
Sbjct: 1   MSLAIGVVSNCKSNMGFDDNKGKEVPEMQHSGKTVHVHEDESGDERGTSLSRHMSEGSIA 60

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
            TEDE++D +R+I+LGPQ TLKEQ EKDKDDESLRRWKEQLLGSVD  SVGESLEPEVKI
Sbjct: 61  ATEDEDEDVERRIDLGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMTSVGESLEPEVKI 120

Query: 120 LSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK 179
           LSLAIK   R DIVL +PE+G P G WFTLKEGSRYSL F+FQV +NIVSGLKYTNTVWK
Sbjct: 121 LSLAIKAAGREDIVLPIPESGNPSGLWFTLKEGSRYSLMFTFQVSHNIVSGLKYTNTVWK 180

Query: 180 TGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINY 239
           TGLKVDSTK M+GTFSPQAEPYT E+PE+TTPSG  ARG YSA+SKFVDDDNK YLEINY
Sbjct: 181 TGLKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGLLARGQYSARSKFVDDDNKLYLEINY 240

Query: 240 TFDIGKEW 247
           TFDI KEW
Sbjct: 241 TFDIRKEW 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453577|ref|XP_004144533.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449515967|ref|XP_004165019.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 177/250 (70%), Positives = 201/250 (80%), Gaps = 10/250 (4%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISV 60
           MSLAVG  S+SKNMG D+    N+ E  G  +     N  N +E +  +SRQMSE S+S 
Sbjct: 1   MSLAVGAASNSKNMGFDE----NREE--GGALD----NHGNENEATEKISRQMSETSLSA 50

Query: 61  TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKIL 120
           TEDE DDE   IELGPQ TLKE+ EKDKDDESLRRWKEQLLG+VD E+ GE+LEPEVKIL
Sbjct: 51  TEDETDDEGSNIELGPQRTLKEELEKDKDDESLRRWKEQLLGAVDLENAGETLEPEVKIL 110

Query: 121 SLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT 180
           SL+I +P RPD+VL +PE+G PKG WFTLKEGSRYSL+FSFQV NNIV+GLKYTNTVWKT
Sbjct: 111 SLSIVSPERPDLVLPIPEDGNPKGLWFTLKEGSRYSLKFSFQVTNNIVAGLKYTNTVWKT 170

Query: 181 GLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYT 240
           G+KVDS K MLGTFSPQ E YT  +PEDTTPSG FARGSYSA+SKF+DDDNKCYLEINYT
Sbjct: 171 GVKVDSAKEMLGTFSPQLETYTHVMPEDTTPSGMFARGSYSARSKFLDDDNKCYLEINYT 230

Query: 241 FDIGKEWLQT 250
           FDI K+W  T
Sbjct: 231 FDIRKDWAAT 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508888|gb|AFK42510.1| unknown [Lotus japonicus]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 174/248 (70%), Positives = 204/248 (82%), Gaps = 6/248 (2%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISV 60
           MSLA+GV S+ K+MG DD DK N    +G+T       +E+       ++R +SE+SI++
Sbjct: 1   MSLAIGVVSNCKSMGFDD-DKHNVD--TGKTAIDYASGDEH---HERNLTRHVSESSIAI 54

Query: 61  TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKIL 120
           TED++DD +RKIELGPQ TLKEQ EKDKDDESLRRWKEQLLGSVD  +VGE+LEPEVKIL
Sbjct: 55  TEDDDDDLERKIELGPQVTLKEQLEKDKDDESLRRWKEQLLGSVDVNAVGETLEPEVKIL 114

Query: 121 SLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT 180
           SLAIK+P R DIVL VPE G P G WFTLKEGSRYSL F+FQV +NIVSGLKY NTVWKT
Sbjct: 115 SLAIKSPGRDDIVLPVPETGNPPGLWFTLKEGSRYSLMFTFQVGHNIVSGLKYINTVWKT 174

Query: 181 GLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYT 240
           G+KVDSTK M+GTFSPQAEPYT E+PE+TTPSG FARG+YSA++KFVDDDNK YLEINYT
Sbjct: 175 GIKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSARTKFVDDDNKMYLEINYT 234

Query: 241 FDIGKEWL 248
           FDI K+W+
Sbjct: 235 FDIRKDWV 242

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559076|ref|XP_002520560.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223540220|gb|EEF41793.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 179/240 (74%), Positives = 202/240 (84%), Gaps = 9/240 (3%)

Query: 20  DKSNKSEVS-GETMPKTPPNEENVDEQS-------GGMSRQMSENSISVT-EDEEDDEDR 70
           D++N  EVS  +T     P+    +EQ        GG+SRQMSE+SI  T ++EEDDE+R
Sbjct: 4   DENNSEEVSETKTASAKSPSAVGAEEQHRVDESKIGGLSRQMSESSIYATDQEEEDDEER 63

Query: 71  KIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP 130
           KIELGPQYTLKEQ EKDKDDESLRRWKEQLLGSVD  +VGE+L+PEVKI+SLAIK+P R 
Sbjct: 64  KIELGPQYTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLDPEVKIISLAIKSPGRD 123

Query: 131 DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMM 190
           DIVLS+PE+G PKG+WFTLKEGSRYSLQF+FQV NNIVSGLKYTNTVWKTG+KVDS K M
Sbjct: 124 DIVLSIPEDGNPKGTWFTLKEGSRYSLQFTFQVGNNIVSGLKYTNTVWKTGVKVDSAKEM 183

Query: 191 LGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWLQT 250
           LGTFSPQAEPYT E+PE+TTPSG FARGSYSA+SKFVDDDNKCYLEINYTFDI KEW  T
Sbjct: 184 LGTFSPQAEPYTHEMPEETTPSGIFARGSYSARSKFVDDDNKCYLEINYTFDIRKEWQST 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495546|ref|XP_002278188.2| PREDICTED: rho GDP-dissociation inhibitor 1-like [Vitis vinifera]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/249 (69%), Positives = 206/249 (82%), Gaps = 8/249 (3%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVS-GETMPKTPPNEENVDEQSGGMSRQMSENSIS 59
           MSLAVGV SSSK+MG D+ + +  +++S  ++  KTP +EE  DE  G       ENS+ 
Sbjct: 1   MSLAVGVVSSSKSMGFDNNEGAANTDLSETKSTAKTPADEERGDEHGG------CENSVD 54

Query: 60  VTEDEEDDED-RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVK 118
            TE+EE++++ RKIELGPQ+TLKEQ EKDKDDESLRRWKEQLLGSVD  SVGE+LEP+VK
Sbjct: 55  ATEEEEEEDEERKIELGPQFTLKEQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPDVK 114

Query: 119 ILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
           IL LAIK+P RPDIVL +PE+G PKG WFTLKEGSRYS+ F+F+V NNIVSGL+ TN VW
Sbjct: 115 ILELAIKSPGRPDIVLPIPESGNPKGLWFTLKEGSRYSMNFAFKVSNNIVSGLRCTNVVW 174

Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEIN 238
           KTGLKVDSTK MLGTFSPQ E YT E+PE+TTPSG FARG+YSAK+KF+DDDNKCYLEIN
Sbjct: 175 KTGLKVDSTKEMLGTFSPQQETYTHEMPEETTPSGIFARGTYSAKTKFLDDDNKCYLEIN 234

Query: 239 YTFDIGKEW 247
           Y+FDI K+W
Sbjct: 235 YSFDIRKDW 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2077462	240	SCN1 "SUPERCENTIPEDE1" [Arabid	0.924	0.970	0.631	4.2e-79
TAIR|locus:2027154	223	AT1G62450 [Arabidopsis thalian	0.861	0.973	0.614	6.7e-72
TAIR|locus:2008965	223	AT1G12070 [Arabidopsis thalian	0.829	0.937	0.655	6.1e-71
ASPGD|ASPL0000061086	197	AN0163 [Emericella nidulans (t	0.690	0.883	0.390	9.8e-32
UNIPROTKB|F1P3P3	204	ARHGDIA "Uncharacterized prote	0.674	0.833	0.406	1e-27
UNIPROTKB|H0YGX7	195	ARHGDIB "Rho GDP-dissociation	0.682	0.882	0.394	1.7e-27
FB|FBgn0036921	201	RhoGDI "RhoGDI" [Drosophila me	0.682	0.855	0.382	2.2e-27
UNIPROTKB|P52565	204	ARHGDIA "Rho GDP-dissociation	0.666	0.823	0.396	4.5e-27
UNIPROTKB|P19803	204	ARHGDIA "Rho GDP-dissociation	0.674	0.833	0.401	7.3e-27
UNIPROTKB|E2RAL0	200	ARHGDIB "Uncharacterized prote	0.682	0.86	0.392	7.3e-27

TAIR|locus:2077462 SCN1 "SUPERCENTIPEDE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 151/239 (63%), Positives = 187/239 (78%)

Query:     9 SSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTXXXXXXX 68
             S +++MG DD + +NK+   G+   +   +    D+ +  +SRQMSE+S+  T       
Sbjct:     5 SGARDMGFDDNN-NNKNNKDGDD--ENSSSRTRADDDA--LSRQMSESSLCATEEEEDDD 59

Query:    69 XRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPS 128
               K++LGPQYT+KE  EKDKDDESLR+WKEQLLGSVD  ++GE+L+PEV+I SLAI +P 
Sbjct:    60 S-KLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLAIISPG 118

Query:   129 RPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTK 188
             RPDIVL VPENG PKG WFTLKEGS+Y+L+F+F V NNIVSGL+YTNTVWKTG+KVD  K
Sbjct:   119 RPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAK 178

Query:   189 MMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
              MLGTFSPQ EPY   +PE+TTPSG FARGSYSA++KF+DDDNKCYLEINY+FDI KEW
Sbjct:   179 EMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 237

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009932 "cell tip growth" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2027154 AT1G62450 [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 142/231 (61%), Positives = 172/231 (74%)

Query:    19 KDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTXXXXXXXXRKIELGPQY 78
             +D+  K E SGET  K             G+SR+ S +S+S T        +K+ELGP  
Sbjct:     4 EDEMKKGEASGETSEKM------------GLSRKNSGSSLSPTEDDEEDEDKKLELGPMI 51

Query:    79 TLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPE 138
              LKEQ E+DKDDESLRRWKEQLLG VD E VGE+ +P VKIL L I++P R ++VL++PE
Sbjct:    52 ALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKILDLTIRSPDREEMVLTIPE 111

Query:   139 NG--RPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSP 196
             +G   PKG WFT+KEGS+Y+L F+F+V NNIVSGL+Y NTVWKTG+KVDSTK MLGTFSP
Sbjct:   112 DGLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAMLGTFSP 171

Query:   197 QAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
             QAE Y   +PE+ TPSG FARGSYSA++KF+DDDNKCYLEINYTFDI K W
Sbjct:   172 QAESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCYLEINYTFDIRKSW 222

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2008965 AT1G12070 [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 139/212 (65%), Positives = 166/212 (78%)

Query:    40 ENVDEQSG-GMSRQMSENSISVTXXXXXXXXRKIELGPQYTLKEQFEKDKDDESLRRWKE 98
             E+ +E  G G+SR+ S +S+  T        +K+ELGP   LKEQ EKDKDDESLRRWKE
Sbjct:    12 ESSEEPKGQGLSRKNSHSSMCPTDDDEEEEDKKLELGPMIALKEQLEKDKDDESLRRWKE 71

Query:    99 QLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRP--KGSWFTLKEGSRYS 156
             QLLGSVD E VGE+ +P VKIL+L I++P R D+VL++PENG+P  KG WFTLKEGS+Y+
Sbjct:    72 QLLGSVDLEEVGETPDPLVKILTLTIRSPDREDMVLTIPENGKPASKGPWFTLKEGSKYT 131

Query:   157 LQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFA 216
             L F+F+V NNIVSGL+Y+NTVWKTG+KV S K MLGTFSPQAEPYT  + E+T PSG   
Sbjct:   132 LIFTFRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLGTFSPQAEPYTHVMFEETAPSGLLV 191

Query:   217 RGSYSAKSKFVDDDNKCYLEINYTFDIGKEWL 248
             RGSYS KSKFVDDDN+CYLE NYTFDI K WL
Sbjct:   192 RGSYSVKSKFVDDDNQCYLENNYTFDIRKNWL 223

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

ASPGD|ASPL0000061086 AN0163 [Emericella nidulans (taxid:162425)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 71/182 (39%), Positives = 116/182 (63%)

Query:    73 ELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKIL-SLAIKTPSRPD 131
             ++G + T+ E  E DK+DESL RWK  L G    E  G+  +P   I+ +LA++   RPD
Sbjct:    17 KVGEKKTIAEYNELDKNDESLNRWKASL-GLNTGEPTGDPNDPRTCIIKTLALEVQGRPD 75

Query:   132 IVLSVPENG---RPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTK 188
             +V+ V   G   + K   FT+KEG+ + ++ +F+V ++++SGLKY   V + G++V   +
Sbjct:    76 VVIDVSAPGALEKLKDKPFTIKEGAHFRIKVTFEVHHDVLSGLKYLQVVKRKGIRVSKDQ 135

Query:   189 MMLGTFSP--QAEP-YTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGK 245
              MLG+++P    +P Y ++  E+  PSG  ARG Y+A+SKF+DDD+K +L  +++FDI K
Sbjct:   136 EMLGSYAPCTTGKPIYEKKFQEEEAPSGMMARGHYNAESKFIDDDDKVHLHFHWSFDIAK 195

Query:   246 EW 247
             +W
Sbjct:   196 DW 197

GO:0007015 "actin filament organization" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0032889 "regulation of vacuole fusion, non-autophagic" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|F1P3P3 ARHGDIA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 70/172 (40%), Positives = 99/172 (57%)

Query:    77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
             Q +++E  E DKDDESLR++KE LLG+V   +   +    V  L+L   T   P ++ L+
Sbjct:    32 QKSIQEIQELDKDDESLRKYKEALLGAVTVTADPNAPNVVVTKLTLVCTTAPGPLELDLT 91

Query:   136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
                    K + F LKEG  Y ++ SF+V   IVSGLKY    ++ G+K+D T+ M+G++ 
Sbjct:    92 GDLESYKKQA-FVLKEGVEYRIKISFRVNREIVSGLKYIQHTFRKGVKIDKTEYMVGSYG 150

Query:   196 PQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
             P+AE Y    P +  P G  ARGSY+ KSKF DDD   +L   +   I KEW
Sbjct:   151 PRAEEYEFLTPMEEAPKGMLARGSYNIKSKFTDDDKTDHLSWEWNLTIKKEW 202

GO:0005737 "cytoplasm" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

UNIPROTKB|H0YGX7 ARHGDIB "Rho GDP-dissociation inhibitor 2" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 69/175 (39%), Positives = 96/175 (54%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct:    23 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 80

Query:   135 SVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTF 194
              + +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G++
Sbjct:    81 DLTDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSY 140

Query:   195 SPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWLQ 249
              P+ E Y    P +  P G  ARG+Y  KS F DDD + +L   +   I KEW +
Sbjct:   141 GPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE 195

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0036921 RhoGDI "RhoGDI" [Drosophila melanogaster (taxid:7227)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 67/175 (38%), Positives = 102/175 (58%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESV-GESLEP-EVKILSLAIKTPSRPDIV 133
             P+ T++E    D++DESLRR+KE LLG+   E +  E  +P +V +  LA+    R D+ 
Sbjct:    26 PEKTIEEIMAADQEDESLRRYKEALLGAAQTEKIIVEPNDPRKVIVKKLALVVEGRDDME 85

Query:   134 LSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG 192
             L +  +  + K   F +KEG +Y ++  F V+  IV GLKY     + G+ VD  K M+G
Sbjct:    86 LDLTGDLSQLKKQLFVIKEGVQYKVRIDFIVQREIVHGLKYVQKTSRLGVNVDKMKHMVG 145

Query:   193 TFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
             ++ P+ E      P +  PSG F+RG+YS  S F DDD   +LE ++TF+I K+W
Sbjct:   146 SYPPKKEIQFYLTPAEEAPSGTFSRGTYSVSSVFTDDDKHIHLEWDWTFEIKKDW 200

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P52565 ARHGDIA "Rho GDP-dissociation inhibitor 1" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 69/174 (39%), Positives = 98/174 (56%)

Query:    77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
             Q +++E  E DKDDESLR++KE LLG V   +  +   P V +  L +   S P   ++ 
Sbjct:    32 QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 89

Query:   134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
             L+       K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G+
Sbjct:    90 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148

Query:   194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
             + P+AE Y    P +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct:   149 YGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 202

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0007162 "negative regulation of cell adhesion" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050770 "regulation of axonogenesis" evidence=TAS

GO:0050771 "negative regulation of axonogenesis" evidence=TAS

GO:0050772 "positive regulation of axonogenesis" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P19803 ARHGDIA "Rho GDP-dissociation inhibitor 1" [Bos taurus (taxid:9913)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 69/172 (40%), Positives = 96/172 (55%)

Query:    77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
             Q +++E  E DKDDESLR++KE LLG V   +        V  L+L   T   P ++ L+
Sbjct:    32 QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 91

Query:   136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
                    K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ 
Sbjct:    92 GDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYG 150

Query:   196 PQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
             P+AE Y    P +  P G  ARGSY+ KS+F DDD   +L   +   I KEW
Sbjct:   151 PRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 202

GO:0001772 "immunological synapse" evidence=ISS

GO:0007266 "Rho protein signal transduction" evidence=ISS

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|E2RAL0 ARHGDIB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 69/176 (39%), Positives = 95/176 (53%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct:    27 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVADPTAPNVTVTRLTLVCESAPGPITM 84

Query:   135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
              +  +    K   F LKEG  Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct:    85 DLTGDLEALKKETFVLKEGVEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 144

Query:   194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWLQ 249
             + P+ E Y    P +  P G  ARG+Y  KS F DDD   +L   +   I KEW +
Sbjct:   145 YGPRPEEYEFLTPAEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKEWTE 200

GO:0005737 "cytoplasm" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SFC6	GDIR_ARATH	No assigned EC number	0.74	0.7896	0.8291	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam02115	200	pfam02115, Rho_GDI, RHO protein GDP dissociation i	3e-74

>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor

 Score =  224 bits (572), Expect = 3e-74
 Identities = 85/186 (45%), Positives = 116/186 (62%), Gaps = 3/186 (1%)

Query: 62  EDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILS 121
           EDEED++    +  PQ +LKE  E DK+DESLR++KE+LLG V    + +  EP V + S
Sbjct: 17  EDEEDEDSVNYKPPPQKSLKEIQELDKEDESLRKYKEKLLGPV--PVLVDPKEPNVVVTS 74

Query: 122 LAIKTPSRPDIVLSVP-ENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT 180
           L + +   P I L +  +  + K   F LKEGS Y L+ SF+V+  IVSGLKY    ++ 
Sbjct: 75  LTLLSEGAPPIELDLTGDLKQLKSQLFVLKEGSEYRLKISFKVQREIVSGLKYVQHTYRA 134

Query: 181 GLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYT 240
           GL+VD TK M+G++ P+AE Y    PE+  PSG  ARGSYSAKSKF DDD   +L   + 
Sbjct: 135 GLRVDKTKYMVGSYGPRAEEYEYLTPEEEAPSGALARGSYSAKSKFTDDDKTDHLSWEWN 194

Query: 241 FDIGKE 246
            +I K+
Sbjct: 195 LEIKKD 200

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
KOG3205	200	consensus Rho GDP-dissociation inhibitor [Signal t	100.0
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	100.0
PF02221	134	E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The	96.02
cd00917	122	PG-PI_TP The phosphatidylinositol/phosphatidylglyc	91.75
smart00737	118	ML Domain involved in innate immunity and lipid me	88.55
cd00258	162	GM2-AP GM2 activator protein (GM2-AP) is a non-enz	85.54
PF11797	140	DUF3324: Protein of unknown function C-terminal (D	82.51

>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]

Probab=100.00  E-value=8.8e-84  Score=559.34  Aligned_cols=198  Identities=57%  Similarity=0.920  Sum_probs=191.8

Q ss_pred             cccccccCCCCCCCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCC
Q 025457           49 MSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPS  128 (252)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~p~V~I~~L~l~~eg  128 (252)
                      ++|+++.|+.+.++++|++.+.+|++||||||+||+++|+|||||||||++|||.++  .+++|++|+|+|.+|+|+|+|
T Consensus         1 ms~~~~~s~~~~~~~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~   78 (200)
T KOG3205|consen    1 MSEKESVSSDHPTEEDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEG   78 (200)
T ss_pred             CCccccccccCCCcccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCC
Confidence            468889999999999888888999999999999999999999999999999999987  688999999999999999999


Q ss_pred             CCCeEEeCCCCCCC--CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCC
Q 025457          129 RPDIVLSVPENGRP--KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP  206 (252)
Q Consensus       129 r~~i~l~L~~~~~~--k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp  206 (252)
                      ||||+|+|++++.+  ++++|+||||+.|+|+|+|+|||||||||||+|+|||+||+|||+.+|||||+|++++|+|.+|
T Consensus        79 r~pi~ldlt~~~~~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p  158 (200)
T KOG3205|consen   79 RPPIVLDLTGDLSPELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTP  158 (200)
T ss_pred             CCCeEEeCCCCccccccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCC
Confidence            99999999998777  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEeccCC
Q 025457          207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWL  248 (252)
Q Consensus       207 ~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~KdW~  248 (252)
                      +|||||||||||+|+|+|+|+|||++|||+|+|+|+|+|+|.
T Consensus       159 ~eeAPsGmlaRG~Ys~~skF~DDDk~~hLe~~w~~~I~K~W~  200 (200)
T KOG3205|consen  159 EEEAPSGMLARGSYSAKSKFTDDDKTCHLEWNWTFDIKKEWK  200 (200)
T ss_pred             cccCCccceeecceeeeeEEecCCCceEEEEEEEEEEeeccC
Confidence            999999999999999999999999999999999999999995

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=100.00  E-value=1.9e-78  Score=531.87  Aligned_cols=190  Identities=47%  Similarity=0.797  Sum_probs=152.1

Q ss_pred             cCCCCCCCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCCCeEE
Q 025457           55 ENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVL  134 (252)
Q Consensus        55 ~~~~~~~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~p~V~I~~L~l~~egr~~i~l  134 (252)
                      +.+.+.+++++++.+.+|++|++|||+||++||++|||||||||||||.++  .++++++|+|+|++|+|+|+|||||+|
T Consensus        10 ~~~~~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~l   87 (200)
T PF02115_consen   10 QEEQEEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVL   87 (200)
T ss_dssp             TCCCCTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEE
T ss_pred             ccccccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeee
Confidence            334455667777777899999999999999999999999999999999887  577899999999999999999999999


Q ss_pred             eCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCce
Q 025457          135 SVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSG  213 (252)
Q Consensus       135 ~L~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSG  213 (252)
                      +|+++.. +++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+|++++.|||||+|++++|+|+||+|+||||
T Consensus        88 dl~~~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG  167 (200)
T PF02115_consen   88 DLTGDLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSG  167 (200)
T ss_dssp             ETTS-GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BS
T ss_pred             eccCccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCc
Confidence            9998743 489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeeEEEEeCCCceEEEEEEeEEEecc
Q 025457          214 FFARGSYSAKSKFVDDDNKCYLEINYTFDIGKE  246 (252)
Q Consensus       214 mLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~Kd  246 (252)
                      |||||+|+|+|+|+|||+++||+|+|+|+|+|+
T Consensus       168 ~laRG~Y~aks~f~DdD~~~~l~~~w~feI~Kd  200 (200)
T PF02115_consen  168 MLARGSYTAKSKFVDDDKNVHLEWEWSFEIKKD  200 (200)
T ss_dssp             TTT-EEEEEEEEEEETTSSECEEEEEEEEEESS
T ss_pred             eeEeeeeeEEEEEEeCCCcEEEEEEEEEEEecC
Confidence            999999999999999999999999999999996

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products

Probab=96.02  E-value=0.42  Score=37.86  Aligned_cols=93  Identities=22%  Similarity=0.325  Sum_probs=63.7

Q ss_pred             eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecc-eEeccc----c-ccccc---cC---CC-CC---CeeeeCC-CC
Q 025457          146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTG-LKVDST----K-MMLGT---FS---PQ-AE---PYTQELP-ED  208 (252)
Q Consensus       146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~G-I~Vdk~----e-~MiGS---Y~---P~-~e---~Y~~~fp-~E  208 (252)
                      +-.++-|..++|.+.|.+.+...++++..-.++-.| ++|--.    . ..-..   ..   |- +.   .|++.++ +.
T Consensus        25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~  104 (134)
T PF02221_consen   25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPK  104 (134)
T ss_dssp             SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEEST
T ss_pred             CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEccc
Confidence            456889999999999999999999998877777777 876544    1 22221   11   22 11   2344443 34


Q ss_pred             CCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEE
Q 025457          209 TTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDI  243 (252)
Q Consensus       209 eAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI  243 (252)
                      ..|.     |+|+++.+++|+++...+=++-.++|
T Consensus       105 ~~p~-----~~~~i~~~l~d~~~~~i~C~~~~v~I  134 (134)
T PF02221_consen  105 IYPP-----GKYTIQWKLTDQDGEEIACFEFPVKI  134 (134)
T ss_dssp             TSSS-----EEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             ceee-----EEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence            4444     59999999999998766655555554

It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....

>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

Probab=91.75  E-value=2.2  Score=34.46  Aligned_cols=82  Identities=17%  Similarity=0.163  Sum_probs=55.4

Q ss_pred             eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc-c---c---cccCCCC-CC--eeeeCCCCCCCceeeeee
Q 025457          149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM-M---L---GTFSPQA-EP--YTQELPEDTTPSGFFARG  218 (252)
Q Consensus       149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~-M---i---GSY~P~~-e~--Y~~~fp~EeAPSGmLaRG  218 (252)
                      ++.|...+|.+.|....++-+|++-.=.++-.||++-.... .   +   |--=|=. -.  |.++   -+-| +++-.|
T Consensus        24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~~---~~ip-~~~P~g   99 (122)
T cd00917          24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTKL---VDLP-GEIPPG   99 (122)
T ss_pred             cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcCCCcEEEEEE---eeCC-CCCCCc
Confidence            78899999999999999888887776678888988764433 1   1   2111221 12  3332   2334 455568


Q ss_pred             eeeeeEEEEeCCCceE
Q 025457          219 SYSAKSKFVDDDNKCY  234 (252)
Q Consensus       219 ~Y~akSkFvDDDk~~h  234 (252)
                      +|.++.++.|+|+...
T Consensus       100 ~y~v~~~l~d~~~~~i  115 (122)
T cd00917         100 KYTVSARAYTKDDEEI  115 (122)
T ss_pred             eEEEEEEEECCCCCEE
Confidence            9999999999777654

These proteins belong to the ML domain family.

>smart00737 ML Domain involved in innate immunity and lipid metabolism

Probab=88.55  E-value=4.9  Score=31.58  Aligned_cols=82  Identities=23%  Similarity=0.388  Sum_probs=50.1

Q ss_pred             eccCCeEEEEEEEEEeeeeeecceeEEEEEecc---eEeccccc----cccccCCCC--CCeeeeCCCCCCCceeeeeee
Q 025457          149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTG---LKVDSTKM----MLGTFSPQA--EPYTQELPEDTTPSGFFARGS  219 (252)
Q Consensus       149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~G---I~Vdk~e~----MiGSY~P~~--e~Y~~~fp~EeAPSGmLaRG~  219 (252)
                      ++-|...+|.+.|...+++-+ | ++.+..+.|   |++-....    .+|..=|-.  +.|.|.+.- ..|+ .+-+|+
T Consensus        21 ~~~g~~~~i~i~f~~~~~~~~-~-~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~-~v~~-~~P~~~   96 (118)
T smart00737       21 PVRGKTLTISISFTLNEDISK-L-KVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSL-TVPG-IFPPGK   96 (118)
T ss_pred             CCCCCEEEEEEEEEEcccceE-E-EEEEEEEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEee-Eccc-cCCCeE
Confidence            378999999999999888755 5 455554444   55543222    124334432  233333221 1232 555789


Q ss_pred             eeeeEEEEeCCCceE
Q 025457          220 YSAKSKFVDDDNKCY  234 (252)
Q Consensus       220 Y~akSkFvDDDk~~h  234 (252)
                      |+++..++|+|+...
T Consensus        97 ~~v~~~l~d~~~~~i  111 (118)
T smart00737       97 YTVKWELTDEDGEEL  111 (118)
T ss_pred             EEEEEEEEcCCCCEE
Confidence            999999999887754

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.

>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides

Probab=85.54  E-value=13  Score=32.72  Aligned_cols=39  Identities=23%  Similarity=0.389  Sum_probs=27.7

Q ss_pred             eCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457          204 ELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIG  244 (252)
Q Consensus       204 ~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  244 (252)
                      ..|.=+-| .||.+|+|.++... +.+++..-=++-+|.++
T Consensus       122 ~lP~~~LP-s~l~~G~Y~i~~~l-~~~g~~l~C~~~~~sL~  160 (162)
T cd00258         122 TLPNVDLP-SWLTNGNYRITGIL-MADGKELGCGKFTFSLE  160 (162)
T ss_pred             ecccccCC-CccCCCcEEEEEEE-CCCCCEEEEEEEEEEEe
Confidence            45545567 49999999999966 77776655556666654

GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.

>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function

Probab=82.51  E-value=16  Score=30.34  Aligned_cols=84  Identities=17%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             EEEEEEEEee---eeeecceeEEEEEecce--EeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCC
Q 025457          156 SLQFSFQVRN---NIVSGLKYTNTVWKTGL--KVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDD  230 (252)
Q Consensus       156 ~iki~FkVq~---eIVsGLkY~q~VkK~GI--~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDD  230 (252)
                      +-.|..+++|   .+++.|+..-.|++.|=  .+-+.+..-.+.||++. +.|..++..-   -|.=|+|+++.+...++
T Consensus        43 ~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk~G~Y~l~~~~~~~~  118 (140)
T PF11797_consen   43 RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN-FNFPIPLGGK---KLKPGKYTLKITAKSGK  118 (140)
T ss_pred             eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe-EEeEecCCCc---CccCCEEEEEEEEEcCC
Confidence            4444455544   48899999999988883  55666666679999875 4445555321   56669999999999988


Q ss_pred             CceEEEEEEeEEEec
Q 025457          231 NKCYLEINYTFDIGK  245 (252)
Q Consensus       231 k~~hL~~eWsfeI~K  245 (252)
                      + .| .|+=.|.|+.
T Consensus       119 ~-~W-~f~k~F~It~  131 (140)
T PF11797_consen  119 K-TW-TFTKDFTITA  131 (140)
T ss_pred             c-EE-EEEEEEEECH
Confidence            7 22 4444677764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
1cc0_E	204	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-27
1doa_B	219	Structure Of The Rho Family Gtp-Binding Protein Cdc		5e-27
4f38_B	204	Crystal Structure Of Geranylgeranylated Rhoa In Com		5e-27
1fst_A	182	Crystal Structure Of Truncated Human Rhogdi Triple		8e-27
1ds6_B	180	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-26
1fso_A	139	Crystal Structure Of Truncated Human Rhogdi Quadrup		4e-21
2jhw_A	138	Crystal Structure Of Rhogdi E155a, E157a Mutant Len		5e-21
2jhz_A	138	Crystal Structure Of Rhogdi E155s, E157s Mutant Len		6e-21
1ft3_A	139	Crystal Structure Of Truncated Rhogdi K141a Mutant		7e-21
1ajw_A	145	Structure Of Rhogdi: A C-Terminal Binding Domain Ta		8e-21
2jht_A	138	Crystal Structure Of Rhogdi K135t,K138t,K141t Mutan		8e-21
2jhx_A	138	Crystal Structure Of Rhogdi E155h, E157h Mutant Len		9e-21
1ft0_A	139	Crystal Structure Of Truncated Human Rhogdi K113a M		2e-20
1qvy_A	139	Crystal Structure Of Rhogdi K(199,200)r Double Muta		2e-20
2jhs_A	138	Crystal Structure Of Rhogdi K135h,K138h,K141h Mutan		3e-20
1kmt_A	141	Crystal Structure Of Rhogdi Glu(154,155)ala Mutant		4e-20
2jhu_A	138	Crystal Structure Of Rhogdi E154a,E155a Mutant Leng		4e-20
2ji0_A	138	Crystal Structure Of Rhogdi K138y, K141y Mutant Len		1e-19
2bxw_A	141	Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mut		1e-19
1rho_A	145	Structure Of Rho Guanine Nucleotide Dissociation In		4e-19

>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 204

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
           Q +++E  E DKDDESLR++KE LLG V   +  +   P V +  L +   S P   ++ 
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 89
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
           L+       K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G+
Sbjct: 90  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           + P+AE Y    P +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 149 YGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 202

>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 219

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
           Q +++E  E DKDDESLR++KE LLG V   +        V  L+L   T   P ++ L+
Sbjct: 47  QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 106
Query: 136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
                  K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ 
Sbjct: 107 GDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYG 165
Query: 196 PQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           P+AE Y    P +  P G  ARGSY+ KS+F DDD   +L   +   I KEW
Sbjct: 166 PRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 217

>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 204

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 93/171 (54%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSV 136
           Q +++E  E DKDDESLR++KE LLG V   +        V  L+L   T   P  +   
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 91
Query: 137 PENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSP 196
            +    K   F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P
Sbjct: 92  GDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGP 151
Query: 197 QAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           +AE Y    P +  P G  ARGSY+ KS+F DDD   +L   +   I KEW
Sbjct: 152 RAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 202

>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant Length = 182

Iteration: 1
 Score =  117 bits (292), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
           Q +++E  E DKDDESLR++KE LLG V   +  +   P V +  L +   S P   ++ 
Sbjct: 10  QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 67
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
           L+       K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D+T  M+G+
Sbjct: 68  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGS 126
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           + P+AE Y    P +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 127 YGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 180

>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex Length = 180

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 4/174 (2%)
Query: 76  PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
           PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct: 7   PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 64
Query: 135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
            +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct: 65  DLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 124
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           + P+ E Y    P +  P G  ARG+Y  KS F DDD + +L   +   I KEW
Sbjct: 125 YGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEW 178

>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple Mutant Length = 139

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 62/101 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D+T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   + F I K+W
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNFTIKKDW 137

>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant Length = 138

Iteration: 1
 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 61/101 (60%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant Length = 138

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 62/101 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y+   P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAESYSFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant Length = 139

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 62/101 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D+T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 137

>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20 Structures Length = 145

Iteration: 1
 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 61/101 (60%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 43  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 102
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSY+ KS+F DDD   +L   +   I KEW
Sbjct: 103 MEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 143

>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant Length = 138

Iteration: 1
 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 62/101 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++TG+ +D+T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGVTIDTTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant Length = 138

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 61/101 (60%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEHYHFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant Length = 139

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y +  SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 137

>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant Length = 139

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 61/101 (60%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I ++W
Sbjct: 97  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIRRDW 137

>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant Length = 138

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant Length = 141

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+A  Y    P
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 98
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 99  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 139

>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant Length = 138

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+A  Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant Length = 138

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVYIDYTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 98  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant Length = 141

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D T  M+G++ P+AE Y    P
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRYGVYIDYTDYMVGSYGPRAEEYEFLTP 98
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 99  VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 139

>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor Length = 145

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 59/101 (58%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG KY    ++ G+K+D T   +G++ P+AE Y    P
Sbjct: 44  FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYXVGSYGPRAEEYEFLTP 103
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
            +  P G  ARGSYS KS+F DDD   +L   +   I K+W
Sbjct: 104 VEEAPKGXLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	8e-69
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	8e-69
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	2e-56

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Length = 219

 Score =  210 bits (536), Expect = 8e-69
 Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 7/208 (3%)

Query: 47  GGMSRQMSENSISVT-------EDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQ 99
           GG+   M+E   +         E+EED+     +   Q +++E  E DKDDESLR++KE 
Sbjct: 10  GGILGLMAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEA 69

Query: 100 LLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQF 159
           LLG V   +        V  L+L   T   P  +    +    K   F LKEG  Y ++ 
Sbjct: 70  LLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKI 129

Query: 160 SFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGS 219
           SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P +  P G  ARGS
Sbjct: 130 SFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGS 189

Query: 220 YSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           Y+ KS+F DDD   +L   +   I KEW
Sbjct: 190 YNIKSRFTDDDRTDHLSWEWNLTIKKEW 217

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Length = 180

 Score =  209 bits (532), Expect = 8e-69
 Identities = 68/175 (38%), Positives = 94/175 (53%), Gaps = 4/175 (2%)

Query: 75  GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IV 133
            PQ +LKE  E DKDDESL ++K+ LLG      V +   P V +  L +   S P  I 
Sbjct: 6   PPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPIT 63

Query: 134 LSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG 192
           + +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G
Sbjct: 64  MDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVG 123

Query: 193 TFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           ++ P+ E Y    P +  P G  ARG+Y  KS F DDD + +L   +   I KEW
Sbjct: 124 SYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEW 178

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Length = 141

 Score =  176 bits (447), Expect = 2e-56
 Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 112 SLEPEVKILSLAIKTPSRPD-IVLSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVS 169
           ++ P V +  L +   S P  + L +  +    K   F LKEG  Y ++ SF+V   IVS
Sbjct: 2   AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVS 61

Query: 170 GLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDD 229
           G+KY    ++ G+K+D T  M+G++ P+A  Y    P +  P G  ARGSYS KS+F DD
Sbjct: 62  GMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDD 121

Query: 230 DNKCYLEINYTFDIGKEW 247
           D   +L   +   I K+W
Sbjct: 122 DKTDHLSWEWNLTIKKDW 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	100.0
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	100.0
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	100.0
2ag4_A	164	GM2-AP, ganglioside GM2 activator; complex of sing	89.98
2r5o_A	188	Putative ATP binding component of ABC- transporter	81.82

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=100.00  E-value=1.3e-80  Score=550.05  Aligned_cols=187  Identities=38%  Similarity=0.647  Sum_probs=175.7

Q ss_pred             CCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCC-CeEEeCCCC
Q 025457           61 TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLSVPEN  139 (252)
Q Consensus        61 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~p~V~I~~L~l~~egr~-~i~l~L~~~  139 (252)
                      .|+++++.+.+|++|++|||+||++|||+|||||||||||||.++  .+.++++|+|+|++|+|+|+||| +|+|+|+++
T Consensus        31 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~~  108 (219)
T 1doa_B           31 AENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTGD  108 (219)
T ss_dssp             SSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSSC
T ss_pred             ccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCCC
Confidence            445556777889999999999999999999999999999999876  46788999999999999999995 599999876


Q ss_pred             CC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeee
Q 025457          140 GR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARG  218 (252)
Q Consensus       140 ~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG  218 (252)
                      .. +++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||
T Consensus       109 ~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG  188 (219)
T 1doa_B          109 LESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARG  188 (219)
T ss_dssp             CGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCS
T ss_pred             hhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeee
Confidence            44 39999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeEEEEeCCCceEEEEEEeEEEeccCCC
Q 025457          219 SYSAKSKFVDDDNKCYLEINYTFDIGKEWLQ  249 (252)
Q Consensus       219 ~Y~akSkFvDDDk~~hL~~eWsfeI~KdW~~  249 (252)
                      +|+|+|+|+|||+++||+|+|+|+|+|+|.+
T Consensus       189 ~Y~akSkF~DDD~~~hL~~eWsfeI~KdW~~  219 (219)
T 1doa_B          189 SYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD  219 (219)
T ss_dssp             EEEEEEEEECTTCCCCEEEEEEEEEESSTTC
T ss_pred             eeeeeEEEEeCCCceEEEEEEEEEEecCCCC
Confidence            9999999999999999999999999999953

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=100.00  E-value=5.4e-80  Score=533.03  Aligned_cols=177  Identities=38%  Similarity=0.614  Sum_probs=169.8

Q ss_pred             cCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCC-CCeEEeCCCCCC-CCCceE
Q 025457           70 RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSR-PDIVLSVPENGR-PKGSWF  147 (252)
Q Consensus        70 ~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~p~V~I~~L~l~~egr-~~i~l~L~~~~~-~k~~~F  147 (252)
                      ++|++|++|||+||++|||||||||||||||||.++  ++++|++|+|+|++|+|+++|| +||+++|+++.. +++.+|
T Consensus         1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f   78 (180)
T 1ds6_B            1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (180)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence            369999999999999999999999999999999876  5778899999999999999999 889999988733 388999


Q ss_pred             EeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEE
Q 025457          148 TLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFV  227 (252)
Q Consensus       148 ~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFv  227 (252)
                      +|||||.|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||+|+|+|+|+
T Consensus        79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~  158 (180)
T 1ds6_B           79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT  158 (180)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred             EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEEEEEeEEEeccCC
Q 025457          228 DDDNKCYLEINYTFDIGKEWL  248 (252)
Q Consensus       228 DDDk~~hL~~eWsfeI~KdW~  248 (252)
                      |||+++||+|+|+|+|+|+|.
T Consensus       159 DDD~~~hl~~~wsfeI~KdW~  179 (180)
T 1ds6_B          159 DDDKQDHLSWEWNLSIKKEWG  179 (180)
T ss_dssp             CTTCCCCEEEEEEEEEESSCC
T ss_pred             cCCCceEEEEEEEEEEeeCCC
Confidence            999999999999999999995

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=100.00  E-value=9.9e-63  Score=411.27  Aligned_cols=137  Identities=36%  Similarity=0.680  Sum_probs=130.6

Q ss_pred             CCCCcEEEEEEEEEcCCCC-CeEEeCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc
Q 025457          112 SLEPEVKILSLAIKTPSRP-DIVLSVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM  189 (252)
Q Consensus       112 ~~~p~V~I~~L~l~~egr~-~i~l~L~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~  189 (252)
                      |++|+|+|++|+|+++||| ||+++|+++.. +++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++
T Consensus         2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~   81 (141)
T 1kmt_A            2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY   81 (141)
T ss_dssp             CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE
Confidence            4678999999999999976 69999987633 499999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEeccCC
Q 025457          190 MLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWL  248 (252)
Q Consensus       190 MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~KdW~  248 (252)
                      |||||+|++++|+|+||+|||||||||||+|+|+|+|+|||+++||+|+|+|+|+|+|.
T Consensus        82 mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~~hl~~~w~feI~KdW~  140 (141)
T 1kmt_A           82 MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWK  140 (141)
T ss_dssp             EEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEEEEESCC-
T ss_pred             eeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCcEEEEEEEeEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999995

>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*

Probab=89.98  E-value=3.2  Score=34.25  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             eeCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457          203 QELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIG  244 (252)
Q Consensus       203 ~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  244 (252)
                      +.+|..+.|+ +|..|.|+++..+.|+ ++...=++-.|.|+
T Consensus       123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~~-~~~l~Ci~~~~~l~  162 (164)
T 2ag4_A          123 FVVPDLELPS-WLTTGNYRIESVLSSS-GKRLGCIKIAASLK  162 (164)
T ss_dssp             EEECCCCCCT-TCSSEEEEEEEEEEET-TEEEEEEEEEEEEE
T ss_pred             eecCcccccC-ccCCceEEEEEEEecC-CCEEEEEEEEEEEE
Confidence            6677778998 9999999999999884 44443555555553

>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}

Probab=81.82  E-value=20  Score=29.45  Aligned_cols=107  Identities=11%  Similarity=0.075  Sum_probs=63.2

Q ss_pred             CCCcEEEEEEEEEcCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEe-cceEeccccccc
Q 025457          113 LEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK-TGLKVDSTKMML  191 (252)
Q Consensus       113 ~~p~V~I~~L~l~~egr~~i~l~L~~~~~~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK-~GI~Vdk~e~Mi  191 (252)
                      .+..+.|.++.|.-.+..++  .            ++.-|..++|+|.|++..+ +..+.+-=.++. .|..|--...+.
T Consensus        44 Gsg~a~I~~v~l~d~~G~~~--~------------~~~~Ge~v~l~i~~~~~~~-i~~~v~G~~Ik~~~G~~I~g~nT~~  108 (188)
T 2r5o_A           44 GQGGAKIIDYHIQSAGVDFP--P------------SLTGNQQTDFLMKVVFEYD-FDCVVPGILIKTLDGLFLYGTNSFL  108 (188)
T ss_dssp             CCCSEEEEEEEEEETTEESC--S------------SEETTCEEEEEEEEEESSC-EEEEEEEEEEEETTCCEEEEEEHHH
T ss_pred             CCCcEEEEEEEEEECCCCEe--e------------EEeCCCEEEEEEEEEECCc-CCccEEEEEEECCCCCEEEecCccc
Confidence            34678899988875532221  1            1567888999999999754 345544334443 487775554333


Q ss_pred             cccCC-----CCCC-e--eeeCCCCCCCceeeeeeeeeeeEEEEeCC-CceEEEEEEe
Q 025457          192 GTFSP-----QAEP-Y--TQELPEDTTPSGFFARGSYSAKSKFVDDD-NKCYLEINYT  240 (252)
Q Consensus       192 GSY~P-----~~e~-Y--~~~fp~EeAPSGmLaRG~Y~akSkFvDDD-k~~hL~~eWs  240 (252)
                      -...+     ++.. +  .|.|+   .   .|.-|.|.+..-+.+.+ ...+..+.|.
T Consensus       109 ~~~~~~~~~~~~G~~~~v~f~f~---l---~L~~G~Y~lsv~i~~~~~~~~~~~~d~~  160 (188)
T 2r5o_A          109 ASEGRENISVSRGDVRVFKFSLP---V---DLNSGDYLLSFGISAGNPQTDMTPLDRR  160 (188)
T ss_dssp             HTTTCCCEEECTTCEEEEEEEEE---C---CBCSEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ccccccccccCCCCEEEEEEEEe---c---ccCCCeEEEEEEEecCCcCCCcEEEEEE
Confidence            21222     2222 2  34444   2   48889999999998876 4455444554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d1ds6b_	179	b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, Rh	9e-79
d1kmta_	138	b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, Rh	2e-62

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  233 bits (595), Expect = 9e-79
 Identities = 68/175 (38%), Positives = 94/175 (53%), Gaps = 4/175 (2%)

Query: 75  GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IV 133
            PQ +LKE  E DKDDESL ++K+ LLG      V +   P V +  L +   S P  I 
Sbjct: 6   PPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPIT 63

Query: 134 LSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG 192
           + +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G
Sbjct: 64  MDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVG 123

Query: 193 TFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
           ++ P+ E Y    P +  P G  ARG+Y  KS F DDD + +L   +   I KEW
Sbjct: 124 SYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEW 178

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  189 bits (483), Expect = 2e-62
 Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 112 SLEPEVKILSLAIKTPSRPD-IVLSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVS 169
           ++ P V +  L +   S P  + L +  +    K   F LKEG  Y ++ SF+V   IVS
Sbjct: 1   AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVS 60

Query: 170 GLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDD 229
           G+KY    ++ G+K+D T  M+G++ P+A  Y    P +  P G  ARGSYS KS+F DD
Sbjct: 61  GMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDD 120

Query: 230 DNKCYLEINYTFDIGKEW 247
           D   +L   +   I K+W
Sbjct: 121 DKTDHLSWEWNLTIKKDW 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kshb_	149	GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}	85.47
d1nepa_	130	Epididymal secretory protein E1 (Niemann-Pick C2 p	84.41

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-79  Score=524.43  Aligned_cols=177  Identities=38%  Similarity=0.637  Sum_probs=168.2

Q ss_pred             cCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCC-CeEEeCCCCCCC-CCceE
Q 025457           70 RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLSVPENGRP-KGSWF  147 (252)
Q Consensus        70 ~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~p~V~I~~L~l~~egr~-~i~l~L~~~~~~-k~~~F  147 (252)
                      .+|++||+|||+||++|||||||||||||||||.++  .++++++|+|+|++|+|+|+++| +|+++|+++... ++.+|
T Consensus         1 ~nyk~~~~ksl~E~~~~D~~DESL~kwKe~Llg~~~--~~~~~~~p~V~i~~l~l~~~~~p~~i~~dl~~~~~~lk~~~f   78 (179)
T d1ds6b_           1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (179)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCCCCccCHHHHHhcCcChhHHHHHHHHhcCCCc--ccCCCCCCcEEEEEeEEEcCCCCCCeEecCCCccccccCCCE
Confidence            379999999999999999999999999999999765  57788999999999999999987 599999866333 88999


Q ss_pred             EeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEE
Q 025457          148 TLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFV  227 (252)
Q Consensus       148 ~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFv  227 (252)
                      +|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++|||||+|++|+|+|+||+|||||||||||+|+|+|+|+
T Consensus        79 ~IKEGs~Y~i~i~F~V~~eivsGLkY~q~vkr~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~F~  158 (179)
T d1ds6b_          79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT  158 (179)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred             EecCCCEEEEEEEEEEecccccCcEEEEEEEECCEEEcceeEeeeccCCCCCceeEeCCCccCCceeEEeecceEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEEEEEeEEEeccCC
Q 025457          228 DDDNKCYLEINYTFDIGKEWL  248 (252)
Q Consensus       228 DDDk~~hL~~eWsfeI~KdW~  248 (252)
                      |||+++||+|+|+|+|+|+|.
T Consensus       159 DDD~~~~l~~~w~feI~KdW~  179 (179)
T d1ds6b_         159 DDDKQDHLSWEWNLSIKKEWG  179 (179)
T ss_dssp             CTTCCCCEEEEEEEEEESSCC
T ss_pred             cCCCcEEEEEEEEEEEecCcC
Confidence            999999999999999999993

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-61  Score=398.59  Aligned_cols=134  Identities=37%  Similarity=0.691  Sum_probs=129.9

Q ss_pred             CCcEEEEEEEEEcCCCC-CeEEeCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccc
Q 025457          114 EPEVKILSLAIKTPSRP-DIVLSVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMML  191 (252)
Q Consensus       114 ~p~V~I~~L~l~~egr~-~i~l~L~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~Mi  191 (252)
                      .|+|+|.+|+|+|+++| +|.|+|+++.. .++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++||
T Consensus         3 ~P~V~v~~l~l~~~~~P~~i~ldl~~~l~~lk~~~f~IKEGs~Y~i~i~F~V~~eivsGLky~q~v~r~Gi~Vdk~~~mv   82 (138)
T d1kmta_           3 VPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMV   82 (138)
T ss_dssp             CCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCceEEEEEEEEcCCCCCCEEEcCCCchhHhcCCCEEecCCCEEEEEEEEEEccccccCcEEEEEEEECCEEEcceeEee
Confidence            58999999999999997 59999998744 49999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEeccC
Q 025457          192 GTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW  247 (252)
Q Consensus       192 GSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~KdW  247 (252)
                      |||+|+.|+|+|+||+|||||||||||+|+|+|+|+|||+++||+|+|+|+|+|||
T Consensus        83 Gsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~f~Ddd~~~~l~~~w~feI~KdW  138 (138)
T d1kmta_          83 GSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW  138 (138)
T ss_dssp             EEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEEEEESCC
T ss_pred             eccCCCCCcEEEeCCCccCCceEEEeeeeeEEEEEEcCCCcEEEEEEEEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999

>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: GMP-PDE delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.47  E-value=0.44  Score=38.01  Aligned_cols=76  Identities=18%  Similarity=0.299  Sum_probs=58.2

Q ss_pred             EEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCC---eeeeCC--CCCCCceeeeeeeeeeeEEEEeCC
Q 025457          156 SLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEP---YTQELP--EDTTPSGFFARGSYSAKSKFVDDD  230 (252)
Q Consensus       156 ~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp--~EeAPSGmLaRG~Y~akSkFvDDD  230 (252)
                      .-.|.|.|. ++|.++|-+|.++=+|-.+..-..-.|=--|++..   ..|.+|  .+..|.-||+ |.-..-|.|.|||
T Consensus        59 ~~~i~Fs~~-e~i~~Frmierhyfr~~lle~~dFeFGF~IP~S~NTwe~iye~p~~~~~~~~~~l~-g~~~~dt~yf~~d  136 (149)
T d1kshb_          59 SRELNFSST-EQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLT-GNVIIETKFFDDD  136 (149)
T ss_dssp             EEEEEEEES-SCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEC-------CCSTTTT-TSEEEEEEEEETT
T ss_pred             ceEEEEecC-cccccceEEEEEeecCceeeEEEeeeeeEecCCCcchhheeecCCccccchHHHhc-CCeEEEEEEEECC
Confidence            456889996 68999999999999999999999999988898752   455555  4478888888 6667788888887


Q ss_pred             Cce
Q 025457          231 NKC  233 (252)
Q Consensus       231 k~~  233 (252)
                      +-+
T Consensus       137 ~Li  139 (149)
T d1kshb_         137 LLV  139 (149)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.41  E-value=6.1  Score=29.09  Aligned_cols=95  Identities=18%  Similarity=0.260  Sum_probs=63.4

Q ss_pred             CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEecc-----ccccccccCCCC--CC--eeeeCC-CCCCCce
Q 025457          144 GSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDS-----TKMMLGTFSPQA--EP--YTQELP-EDTTPSG  213 (252)
Q Consensus       144 ~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk-----~e~MiGSY~P~~--e~--Y~~~fp-~EeAPSG  213 (252)
                      ..|=.|+.|...+|.|.|....++ .+|+-.=.++=.||++--     ..-.-|..=|=.  +.  |.+.+| +...|  
T Consensus        25 ~~PC~l~rG~~~~i~i~f~~~~~~-~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~CPl~~G~~~~y~~~~~I~~~~P--  101 (130)
T d1nepa_          25 TQPCKLHRGQSYSVNVTFTSNTQS-QSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYP--  101 (130)
T ss_dssp             SSSEEEETTCEEEEEEEEEESSCB-SCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSC--
T ss_pred             CCCCEeeCCCEEEEEEEEEcCccc-ceEEEEEEEEECCEEecccCCCCcccccCCcCCccCCceEEEEEEEEcchhhc--
Confidence            346779999999999999998875 568877777788887532     111223333432  23  455554 23344  


Q ss_pred             eeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457          214 FFARGSYSAKSKFVDDDNKCYLEINYTFDIG  244 (252)
Q Consensus       214 mLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  244 (252)
                         +++|+++...+|++++...=|.-..+|+
T Consensus       102 ---~~~~~v~~~l~d~~~~~i~Cf~v~~~I~  129 (130)
T d1nepa_         102 ---SIKVVVEWELTDDKNQRFFCWQIPIEVE  129 (130)
T ss_dssp             ---SSEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             ---cEEEEEEEEEEcCCCCEEEEEEEeeEEE
Confidence               5789999999999987655555555553