Citrus Sinensis ID: 025464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEEEEEEEHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccEcccccccccccccc
mpiyriaigtpgeashPDALKAALAEFFSMIIFVFagqgsgmafskltdggastpaglISASLAHAFALFVAVSVganisgghvnpavtfgAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYAtavdpkkgnlgtiapiAIGFIVGANilaggafdgasmnpavsfgpAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHifiddnahqplpandf
MPIYRIAIgtpgeashPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF
MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF
****RIAI*********DALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD***********
***YR***GTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID************
MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF
****RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDN**********
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
O82598252 Aquaporin TIP1-3 OS=Arabi yes no 1.0 1.0 0.837 1e-119
P25818251 Aquaporin TIP1-1 OS=Arabi no no 0.996 1.0 0.761 1e-105
Q94CS9252 Probable aquaporin TIP1-2 yes no 1.0 1.0 0.785 1e-104
Q41963253 Aquaporin TIP1-2 OS=Arabi no no 1.0 0.996 0.754 1e-104
Q9ATM0254 Aquaporin TIP1-2 OS=Zea m N/A no 0.984 0.976 0.794 1e-102
P50156250 Probable aquaporin TIP1-1 no no 0.992 1.0 0.757 1e-99
O64964250 Aquaporin TIP1-1 OS=Zea m N/A no 0.992 1.0 0.746 2e-97
Q9FY14250 Probable aquaporin TIP-ty N/A no 0.992 1.0 0.742 2e-92
P42067249 Probable aquaporin TIP-ty N/A no 0.988 1.0 0.734 5e-90
Q9AT75266 Aquaporin TIP3-2 OS=Zea m N/A no 0.984 0.932 0.552 2e-75
>sp|O82598|TIP13_ARATH Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1 Back     alignment and function desciption
 Score =  427 bits (1097), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/252 (83%), Positives = 234/252 (92%)

Query: 1   MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLIS 60
           MPI RIAIGTPGEAS PDA++AA AEFFSM+IFVFAGQGSGMA+ KLT  G +TPAGL++
Sbjct: 1   MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVA 60

Query: 61  ASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLL 120
           ASL+HAFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+ITLLR+ILYWIAQLLG+VVACLL
Sbjct: 61  ASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLL 120

Query: 121 LKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIG 180
           LK STGG+ET+AF+LS GV+ WNAVVFEIVMTFGLVYTVYATAVDPKKG++G IAP+AIG
Sbjct: 121 LKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIG 180

Query: 181 FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID 240
            IVGANIL GGAFDGASMNPAVSFGPAVVSW WTNHWVYW+GPFIGAAIAAIVYD IFI 
Sbjct: 181 LIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTIFIG 240

Query: 241 DNAHQPLPANDF 252
            N H+PLP+NDF
Sbjct: 241 SNGHEPLPSNDF 252
Potential aquaporin, which may facilitate the transport of water and small neutral solutes across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|P25818|TIP11_ARATH Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q94CS9|TIP12_ORYSJ Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q41963|TIP12_ARATH Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2 Back     alignment and function description
>sp|Q9ATM0|TIP12_MAIZE Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|P50156|TIP11_ORYSJ Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|O64964|TIP11_MAIZE Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FY14|TIP1_MEDTR Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1 Back     alignment and function description
>sp|P42067|TIP1_MEDSA Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9AT75|TIP32_MAIZE Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
255582378252 tonoplast intrinsic protein, putative [R 1.0 1.0 0.896 1e-119
8699604251 putative aquaporin TIP3 [Vitis cinerea v 0.996 1.0 0.892 1e-118
444300800252 aquaporin protein 6 [Camellia sinensis] 1.0 1.0 0.845 1e-118
15234189252 aquaporin TIP1-3 [Arabidopsis thaliana] 1.0 1.0 0.837 1e-117
116831328253 unknown [Arabidopsis thaliana] 1.0 0.996 0.837 1e-117
111379084251 putative aquaporin [Vitis vinifera] gi|1 0.996 1.0 0.880 1e-116
147782293251 hypothetical protein VITISV_007330 [Viti 0.996 1.0 0.880 1e-116
356499667252 PREDICTED: aquaporin TIP1-3-like [Glycin 1.0 1.0 0.821 1e-116
225449627251 PREDICTED: aquaporin TIP1-3 [Vitis vinif 0.996 1.0 0.880 1e-116
297810015252 GAMMA-TIP3/TIP1_3 [Arabidopsis lyrata su 1.0 1.0 0.821 1e-116
>gi|255582378|ref|XP_002531978.1| tonoplast intrinsic protein, putative [Ricinus communis] gi|223528375|gb|EEF30414.1| tonoplast intrinsic protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/252 (89%), Positives = 242/252 (96%)

Query: 1   MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLIS 60
           MPI RIA+G PGEAS PDAL+AALAEFFSMIIFVFAG+GSGMAF+KLTDGG++TP+GL++
Sbjct: 1   MPISRIAVGNPGEASQPDALRAALAEFFSMIIFVFAGEGSGMAFNKLTDGGSTTPSGLVA 60

Query: 61  ASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLL 120
           ASL+HAFALFVAVSVGANISGGHVNPAVTFGAF+GGHITLLR ILYWIAQLLGSVVACLL
Sbjct: 61  ASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLLRGILYWIAQLLGSVVACLL 120

Query: 121 LKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIG 180
           LKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGN+G IAPIAIG
Sbjct: 121 LKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIG 180

Query: 181 FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID 240
           FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYW+GP IG+AIAAIVYD+IFI 
Sbjct: 181 FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWVGPLIGSAIAAIVYDNIFIG 240

Query: 241 DNAHQPLPANDF 252
             AH+PLP NDF
Sbjct: 241 YGAHEPLPVNDF 252

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|8699604|gb|AAF78757.1|AF271660_1 putative aquaporin TIP3 [Vitis cinerea var. helleri x Vitis rupestris] Back     alignment and taxonomy information
>gi|444300800|gb|AGD98709.1| aquaporin protein 6 [Camellia sinensis] Back     alignment and taxonomy information
>gi|15234189|ref|NP_192056.1| aquaporin TIP1-3 [Arabidopsis thaliana] gi|32363219|sp|O82598.1|TIP13_ARATH RecName: Full=Aquaporin TIP1-3; AltName: Full=Gamma-tonoplast intrinsic protein 3; Short=Gamma-TIP3; AltName: Full=Tonoplast intrinsic protein 1-3; Short=AtTIP1;3 gi|3695375|gb|AAC62778.1| F11O4.1 [Arabidopsis thaliana] gi|7268190|emb|CAB77717.1| putative water channel protein [Arabidopsis thaliana] gi|91806624|gb|ABE66039.1| major intrinsic family protein/MIP family protein [Arabidopsis thaliana] gi|332656631|gb|AEE82031.1| aquaporin TIP1-3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116831328|gb|ABK28617.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|111379084|gb|ABH09329.1| putative aquaporin [Vitis vinifera] gi|123965225|gb|AAW02943.2| aquaporin [Vitis vinifera] Back     alignment and taxonomy information
>gi|147782293|emb|CAN74049.1| hypothetical protein VITISV_007330 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499667|ref|XP_003518658.1| PREDICTED: aquaporin TIP1-3-like [Glycine max] Back     alignment and taxonomy information
>gi|225449627|ref|XP_002284211.1| PREDICTED: aquaporin TIP1-3 [Vitis vinifera] gi|296086287|emb|CBI31728.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297810015|ref|XP_002872891.1| GAMMA-TIP3/TIP1_3 [Arabidopsis lyrata subsp. lyrata] gi|297318728|gb|EFH49150.1| GAMMA-TIP3/TIP1_3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
TAIR|locus:2116987252 TIP1;3 "tonoplast intrinsic pr 1.0 1.0 0.837 4.5e-114
TAIR|locus:2057906251 GAMMA-TIP "gamma tonoplast int 0.996 1.0 0.761 2.6e-102
TAIR|locus:2088867253 TIP2 "tonoplast intrinsic prot 1.0 0.996 0.754 1.4e-101
TAIR|locus:2197279268 TIP3;1 [Arabidopsis thaliana ( 0.968 0.910 0.564 1.3e-77
TAIR|locus:2030968267 BETA-TIP "beta-tonoplast intri 0.968 0.913 0.550 2.1e-77
TAIR|locus:2094977250 DELTA-TIP "delta tonoplast int 0.976 0.984 0.572 1.9e-74
TAIR|locus:2168953250 TIP2;3 "tonoplast intrinsic pr 0.932 0.94 0.6 1.1e-73
TAIR|locus:2130883250 TIP2;2 "tonoplast intrinsic pr 0.972 0.98 0.574 2.2e-73
TAIR|locus:2043505249 TIP4;1 "tonoplast intrinsic pr 0.956 0.967 0.530 9.2e-68
TAIR|locus:2099595256 TIP5;1 "tonoplast intrinsic pr 0.876 0.863 0.436 3e-46
TAIR|locus:2116987 TIP1;3 "tonoplast intrinsic protein 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 211/252 (83%), Positives = 234/252 (92%)

Query:     1 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLIS 60
             MPI RIAIGTPGEAS PDA++AA AEFFSM+IFVFAGQGSGMA+ KLT  G +TPAGL++
Sbjct:     1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVA 60

Query:    61 ASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLL 120
             ASL+HAFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+ITLLR+ILYWIAQLLG+VVACLL
Sbjct:    61 ASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLL 120

Query:   121 LKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIG 180
             LK STGG+ET+AF+LS GV+ WNAVVFEIVMTFGLVYTVYATAVDPKKG++G IAP+AIG
Sbjct:   121 LKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIG 180

Query:   181 FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID 240
              IVGANIL GGAFDGASMNPAVSFGPAVVSW WTNHWVYW+GPFIGAAIAAIVYD IFI 
Sbjct:   181 LIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTIFIG 240

Query:   241 DNAHQPLPANDF 252
              N H+PLP+NDF
Sbjct:   241 SNGHEPLPSNDF 252
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;IDA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0015204 "urea transmembrane transporter activity" evidence=IDA
GO:0015840 "urea transport" evidence=IDA
TAIR|locus:2057906 GAMMA-TIP "gamma tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088867 TIP2 "tonoplast intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030968 BETA-TIP "beta-tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094977 DELTA-TIP "delta tonoplast integral protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168953 TIP2;3 "tonoplast intrinsic protein 2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130883 TIP2;2 "tonoplast intrinsic protein 2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043505 TIP4;1 "tonoplast intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099595 TIP5;1 "tonoplast intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P50156TIP11_ORYSJNo assigned EC number0.75790.99201.0nono
P25818TIP11_ARATHNo assigned EC number0.76190.99601.0nono
P42067TIP1_MEDSANo assigned EC number0.73410.98801.0N/Ano
Q84RL6TIP23_MAIZENo assigned EC number0.57660.97220.9879N/Ano
P33560TIP_ANTMANo assigned EC number0.57890.97220.98N/Ano
P23958TIPA_PHAVUNo assigned EC number0.53511.00.9843N/Ano
Q5R819AQP1_PONABNo assigned EC number0.38280.85710.8029yesno
Q41963TIP12_ARATHNo assigned EC number0.75491.00.9960nono
P24422TIP2_TOBACNo assigned EC number0.58530.96820.976N/Ano
Q9FY14TIP1_MEDTRNo assigned EC number0.74200.99201.0N/Ano
Q9ATL9TIP21_MAIZENo assigned EC number0.57660.97610.9879N/Ano
Q9ATL8TIP22_MAIZENo assigned EC number0.58060.98010.988N/Ano
P29975AQP1_RATNo assigned EC number0.38730.85710.8029yesno
Q9ATL7TIP31_MAIZENo assigned EC number0.56030.99200.9541N/Ano
P21653TIP1_TOBACNo assigned EC number0.58700.97220.98N/Ano
O82598TIP13_ARATHNo assigned EC number0.83731.01.0yesno
Q02013AQP1_MOUSENo assigned EC number0.38730.85710.8029yesno
O64964TIP11_MAIZENo assigned EC number0.74600.99201.0N/Ano
Q94CS9TIP12_ORYSJNo assigned EC number0.78571.01.0yesno
Q9ATM0TIP12_MAIZENo assigned EC number0.79430.98410.9763N/Ano
Q9AT75TIP32_MAIZENo assigned EC number0.55290.98410.9323N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-159
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-86
pfam00230218 pfam00230, MIP, Major intrinsic protein 4e-81
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-69
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 3e-64
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 8e-52
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 4e-32
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 6e-24
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 6e-24
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-22
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 4e-20
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 5e-19
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-14
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information 
 Score =  440 bits (1134), Expect = e-159
 Identities = 214/252 (84%), Positives = 230/252 (91%)

Query: 1   MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLIS 60
           MPI RIAIGTPGEASHPDALKAALAEF S +IFVFAG+GSGMAF+KLTD G++TPAGL++
Sbjct: 1   MPIRRIAIGTPGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVA 60

Query: 61  ASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLL 120
           A+LAHAFALFVAVSVGANISGGHVNPAVTFGAF+GG+ITLLR ILYWIAQLLGSVVACLL
Sbjct: 61  AALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLL 120

Query: 121 LKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIG 180
           LKFSTGGLETSAF+LSSGV  WNA VFEIVMTFGLVYTVYATAVDPKKG+LG IAPIAIG
Sbjct: 121 LKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIG 180

Query: 181 FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID 240
           FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYW GP IG  IA +VY+ IFI 
Sbjct: 181 FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIG 240

Query: 241 DNAHQPLPANDF 252
              H+ LP  D+
Sbjct: 241 STTHEQLPTTDY 252

Length = 252
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.67
PLN00184 296 aquaporin NIP1; Provisional 99.66
PLN00167 256 aquaporin TIP5; Provisional 99.58
PLN00182283 putative aquaporin NIP4; Provisional 99.58
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.57
PLN00183274 putative aquaporin NIP7; Provisional 99.57
PLN00166 250 aquaporin TIP2; Provisional 99.57
PLN00027 252 aquaporin TIP; Provisional 99.52
PRK05420 231 aquaporin Z; Provisional 99.51
PTZ00016 294 aquaglyceroporin; Provisional 99.49
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.47
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.4
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.39
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.35
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.24
PRK11562268 nitrite transporter NirC; Provisional 90.13
COG2116265 FocA Formate/nitrite family of transporters [Inorg 82.46
PRK10805285 formate transporter; Provisional 81.07
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-54  Score=363.06  Aligned_cols=232  Identities=48%  Similarity=0.834  Sum_probs=209.0

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHH
Q 025464           11 PGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTF   90 (252)
Q Consensus        11 ~~~~~~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl   90 (252)
                      .++..+++.+|++++||++|++++|++|++.+.+..     ...+.+.+.+++++|+++++.+++++++||||+|||||+
T Consensus         2 ~~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~-----~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~   76 (238)
T KOG0223|consen    2 SGELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK-----YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTL   76 (238)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHH
Confidence            356778999999999999999999999999976432     234667899999999999999999999999999999999


Q ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCC----cccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025464           91 GAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGL----ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDP  166 (252)
Q Consensus        91 ~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~  166 (252)
                      ++++.|++++.++..|+.+|++|+++|+.+++.+.+++    ......+.++.+..|+++.|++.||+|+++++.+++|+
T Consensus        77 a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~  156 (238)
T KOG0223|consen   77 AFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDP  156 (238)
T ss_pred             HHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecC
Confidence            99999999999999999999999999999999999863    23345577889999999999999999999999988888


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcCCCCCCC
Q 025464          167 KKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQP  246 (252)
Q Consensus       167 ~~~~~~~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~~~~~~~  246 (252)
                      |++   .+.|+.||+.+.+.+++.+++||++|||||+|||++..+.|+++|+||++|++|+++++++|+.++.++ +++.
T Consensus       157 ~~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~-~~~~  232 (238)
T KOG0223|consen  157 RRS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD-ESEP  232 (238)
T ss_pred             CCc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc-cccc
Confidence            775   579999999999999999999999999999999999999999999999999999999999999999985 4444


Q ss_pred             CCCCC
Q 025464          247 LPAND  251 (252)
Q Consensus       247 ~~~~~  251 (252)
                      +++.+
T Consensus       233 ~~~~~  237 (238)
T KOG0223|consen  233 TKSAD  237 (238)
T ss_pred             cCccC
Confidence            44443

>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 5e-36
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 4e-35
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 6e-35
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 1e-34
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 1e-34
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-33
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 1e-33
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 2e-33
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 9e-33
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 6e-31
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-30
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-30
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-30
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-30
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-30
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 2e-26
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-18
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-17
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 2e-11
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 8e-09
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 8e-09
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 8e-09
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 1e-08
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 1e-08
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 2e-08
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 2e-08
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 4e-08
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 3e-07
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-06
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 8/224 (3%)
Query: 21  KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGA 77
           +A +AEF +MI+F+F   GS + F        +T A   +  ++ AF L +A    SVG 
Sbjct: 12  RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG- 70
Query: 78  NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---A 134
           +ISG H+NPAVT G  +   I++LR+I+Y IAQ +G++VA  +L   T  L  ++    A
Sbjct: 71  HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNA 130
Query: 135 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFD 194
           L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG   P+AIGF V    L    + 
Sbjct: 131 LAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYT 189
Query: 195 GASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
           G  +NPA SFG +V++  + +HW++W+GPFIGAA+A ++YD I 
Sbjct: 190 GCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFIL 233
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 7e-93
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 8e-90
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-89
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-88
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 3e-87
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 4e-87
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 5e-86
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-84
2o9g_A234 Aquaporin Z; integral membrane protein, structural 3e-78
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 2e-75
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 1e-66
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 9e-39
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-36
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  275 bits (706), Expect = 7e-93
 Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 7/243 (2%)

Query: 2   PIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISA 61
           P  R  +            KA  AEF +M+IFV    GS + +    +     P  ++  
Sbjct: 34  PSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSEN---PLPVDMVLI 90

Query: 62  SLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLL 121
           SL    ++   V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L
Sbjct: 91  SLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 150

Query: 122 KFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIA 178
              T            +   +++ + ++ E+++TF LV+T++A+  D K+ ++     +A
Sbjct: 151 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALA 209

Query: 179 IGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
           IGF V    L    + GASMNPA SFGPAV+   W NHW+YW+GP IGA +A  +Y+++F
Sbjct: 210 IGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 269

Query: 239 IDD 241
             D
Sbjct: 270 CPD 272
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.6
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.58
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.49
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.47
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.47
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.45
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.43
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.43
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.42
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.42
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.42
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.41
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.41
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 91.28
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.5e-54  Score=363.62  Aligned_cols=220  Identities=35%  Similarity=0.623  Sum_probs=193.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHhc
Q 025464           17 PDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGG   96 (252)
Q Consensus        17 ~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~g   96 (252)
                      ++.+|++++||+||++|+++++++.+..   .++.+.++.+++.++++||+++++.+++++++||||+|||||+++++.|
T Consensus         1 ~~~~r~~~aEfiGT~~lv~~g~g~~~~~---~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g   77 (223)
T 3gd8_A            1 QAFWKAVTAEFLAMLIFVLLSLGSTINW---GGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTR   77 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCT---TTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcC
Confidence            4689999999999999999999998643   1222233567899999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhCCC---cccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 025464           97 HITLLRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGT  173 (252)
Q Consensus        97 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~~  173 (252)
                      +++|++++.|+++|++||++|+.+++.++++.   ....+.+.++.+..++++.|+++|++|+++++. ..|+++.....
T Consensus        78 ~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~-~~~~~~~~~~~  156 (223)
T 3gd8_A           78 KISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFA-SCDSKRTDVTG  156 (223)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHH-HTCTTCSCCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHH-HhccccCCccC
Confidence            99999999999999999999999999988642   123345667789999999999999999999998 46666544445


Q ss_pred             chhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcC
Q 025464          174 IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID  240 (252)
Q Consensus       174 ~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~  240 (252)
                      ..|+.||+.+...+..++++||++||||||||||++.++|+++|+||++|++|+++++++|++++.|
T Consensus       157 ~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p  223 (223)
T 3gd8_A          157 SIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP  223 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence            6899999999888888888899999999999999999999999999999999999999999998764
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 252
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-40
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 7e-35
d1ymga1 234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 5e-04
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-29
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 4e-29
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  137 bits (346), Expect = 2e-40
 Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 6/223 (2%)

Query: 21  KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPA--GLISASLAHAFALFVAVSVGAN 78
           +A +AEF +MI+F+F   GS + F        +T A    +  SLA   ++        +
Sbjct: 12  RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71

Query: 79  ISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSA---FAL 135
           ISG H+NPAVT G  +   I++LR+I+Y IAQ +G++VA  +L   T  L  ++    AL
Sbjct: 72  ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131

Query: 136 SSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDG 195
           + GV+S   +  EI+ T  LV  V AT  D ++ +LG   P+AIGF V    L    + G
Sbjct: 132 APGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYTG 190

Query: 196 ASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 238
             +NPA SFG +V++  + +HW++W+GPFIGAA+A ++YD I 
Sbjct: 191 CGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFIL 233
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.56
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.43
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.35
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.23
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-51  Score=346.43  Aligned_cols=219  Identities=37%  Similarity=0.646  Sum_probs=193.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccCCcCchHHHHHHHHh
Q 025464           16 HPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVG   95 (252)
Q Consensus        16 ~~~~~~~~~~EfigTfllv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~isGah~NPavTl~~~~~   95 (252)
                      +.+++|++++||+|||+++|+++++.+...       ....+.+.+++++|++++..++.++++||||+|||||+++++.
T Consensus         1 s~s~~r~~laEf~GT~~lvf~g~gs~~~~~-------~~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~   73 (234)
T d1ymga1           1 SASFWRAICAEFFASLFYVFFGLGASLRWA-------PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVG   73 (234)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHCSCC--------CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhc
Confidence            357899999999999999999999875321       1235678899999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---cccccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 025464           96 GHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG  172 (252)
Q Consensus        96 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~E~~~t~~l~~~v~~~~~~~~~~~~~  172 (252)
                      |+++|++.+.|+++|++||++|+++++.++++...   ....+.++.+..++++.|++.|++|++.++.+ .|+++....
T Consensus        74 g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~-~~~~~~~~~  152 (234)
T d1ymga1          74 SQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRL  152 (234)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCTTSCSCC
T ss_pred             cCCChhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheee-ecCCccCcC
Confidence            99999999999999999999999999999875422   23345677889999999999999999999984 565554444


Q ss_pred             cchhHHHHHHHHHHHHHcCCCCCccccccchHHHHHhhcCCCcceecchhhHHHHHHHHHHHHHHhcCCC
Q 025464          173 TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDN  242 (252)
Q Consensus       173 ~~~~~~ig~~v~~~~~~~~~~tg~~lNPA~~l~~~~~~~~~~~~~vy~~~p~~Ga~la~~l~~~~~~~~~  242 (252)
                      ...++.+|+.+.+.....+++||+++||||||||+++++.|+++|+||++|++|+++|+++|++++.|+.
T Consensus       153 ~~~~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~  222 (234)
T d1ymga1         153 GSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRL  222 (234)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred             cceeEeehHHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCC
Confidence            5679999999999999999999999999999999999999999999999999999999999999998843
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure