Citrus Sinensis ID: 025494

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPDQAPNGYDSNSSSEEMQKP
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccEEEcccccHHHHccEEEEEccccccHHHHHHHHHHHHccccccccEEEccccccccccccccccEEEcccccccccccHHcHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccEEEEcccccEEEEccEEEEEcccEccHHHHHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEccccccccHcHccHHHHHHHcHHccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHcccc
Coil and Loop (DISEMBL)
mkrhtrssfaIGLSLSTAFLVIVVRAFIVRRsrynrpgsvedlvrrgqlrsdrrgisrplkyedpfnnplvkvgksnstmemcgkvyrlapitltkeQQTIHQKRRsrayqwkrptiflkegdlippdvdpdtvrwipanhpfattandidedlaqnnvyqkqgvpfRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERafklnpkseepldqnpfvnqsgdlrpprpdqapngydsnssseemqkp
Flexible Loop (DISEMBL)
mkrhtrssfaiglslstaFLVIVVRAFIVrrsrynrpgsvedlvrrgqlrsdrrgisrplkyedpfnnplvkvgksnstmeMCGKVYRLapitltkeqqtihqkrrsrayqwkrptiflkegdlippdVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERAFKlnpkseepldqnpfvnqsgdlrppRPDQapngydsnssseemqkp
Low Complexity Region (SEG)
MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPDQAPNGYDSNSSSEEMQKP
Disordered region (IsUnstruct)
********FAIGLSLSTAFLVIVVRAFIVRRSRYN***********************************V*******TMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRA*********************************************************************************
Disordered Region (DISOPRED)
******S**AIGLSLSTAFLVIVVRAF**********************************YEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITL****************QWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRA*********************************************************************************
Disordered Region (DISEMBL)
********FAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTK*************YQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPD******************
Disordered Region (DISPRO)
*****RSSFAIGLSLSTAFLVIVVRAFIVRR********V********LRS*RRGISRPLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQN***LNKL************************************************************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPDQAPNGYDSNSSSEEMQKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
255539300	358	conserved hypothetical protein [Ricinus	0.988	0.695	0.76	1e-109
224065649	252	predicted protein [Populus trichocarpa]	1.0	1.0	0.761	1e-102
224083354	269	predicted protein [Populus trichocarpa]	1.0	0.936	0.777	1e-102
449455623	358	PREDICTED: uncharacterized protein LOC10	0.972	0.684	0.693	3e-98
225457624	335	PREDICTED: uncharacterized protein LOC10	0.932	0.701	0.718	3e-93
15218043	349	multiple chloroplast division site 1 [Ar	0.932	0.673	0.673	1e-91
8886939	364	F2D10.35 [Arabidopsis thaliana]	0.932	0.645	0.673	2e-91
297845062	351	hypothetical protein ARALYDRAFT_472319 [	0.936	0.672	0.686	1e-90
356508508	361	PREDICTED: uncharacterized protein LOC10	0.841	0.587	0.669	3e-87
363807146	363	uncharacterized protein LOC100812404 [Gl	0.841	0.584	0.657	2e-86

>gi|255539300|ref|XP_002510715.1| conserved hypothetical protein [Ricinus communis] gi|223551416|gb|EEF52902.1| conserved hypothetical protein [Ricinus communis]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/250 (76%), Positives = 221/250 (88%), Gaps = 1/250 (0%)

Query: 2   KRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRP-GSVEDLVRRGQLRSDRRGISRPL 60
           +R + S+  I L ++TAFLVI +R ++VR++RY RP GSV DLVRRGQLRSDRRGIS PL
Sbjct: 109 RRQSGSNIIIWLCVATAFLVIALRVYVVRKTRYRRPPGSVADLVRRGQLRSDRRGISMPL 168

Query: 61  KYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLK 120
           KY+DPFNNPLVKVGKSNST+EMCGKVYRLAP+TLTKEQQ IHQKRRSRAYQWKRPTIFLK
Sbjct: 169 KYDDPFNNPLVKVGKSNSTVEMCGKVYRLAPVTLTKEQQAIHQKRRSRAYQWKRPTIFLK 228

Query: 121 EGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKL 180
           EGD IPPDVDPDTVRWIPANHPFATTA+DIDEDLAQ NVYQK GVPFRI+AEHEALQ+KL
Sbjct: 229 EGDSIPPDVDPDTVRWIPANHPFATTASDIDEDLAQTNVYQKHGVPFRIQAEHEALQRKL 288

Query: 181 EALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPDQAPNGY 240
           EALQ +QKLNKLVID+SNAKDFER FK NPKS E ++Q+PF +Q+G+ +P + +  PN +
Sbjct: 289 EALQQDQKLNKLVIDTSNAKDFERPFKSNPKSNELVEQSPFNDQAGEPKPSKSNSIPNSF 348

Query: 241 DSNSSSEEMQ 250
           +S+ SSEE+Q
Sbjct: 349 NSSLSSEELQ 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065649|ref|XP_002301902.1| predicted protein [Populus trichocarpa] gi|222843628|gb|EEE81175.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/252 (76%), Positives = 224/252 (88%)

Query: 1   MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPL 60
           M+R + S+F I L ++TAFLV+ VR ++VR+SR +RPGSV DLVRRGQLRSDRRGIS PL
Sbjct: 1   MRRASGSNFVIWLCVATAFLVVAVRVYVVRKSRQSRPGSVADLVRRGQLRSDRRGISSPL 60

Query: 61  KYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLK 120
           KYEDPFNNPLVKV KSNST+EMCGKVYRLAP+TLTK+QQ IHQ+RRSRAYQWKRPTIFLK
Sbjct: 61  KYEDPFNNPLVKVSKSNSTVEMCGKVYRLAPVTLTKDQQAIHQRRRSRAYQWKRPTIFLK 120

Query: 121 EGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKL 180
           EGD IPP+VDPDTVRWIPANHPFATTA+DIDEDLAQNNVYQK GVPFRI+AEHEALQ+KL
Sbjct: 121 EGDSIPPNVDPDTVRWIPANHPFATTASDIDEDLAQNNVYQKHGVPFRIQAEHEALQRKL 180

Query: 181 EALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPDQAPNGY 240
           E LQNEQKLNKLVID+ NAK+FER+FK NPKS E ++++ F +QSGD +P + D++ N  
Sbjct: 181 ETLQNEQKLNKLVIDTGNAKEFERSFKSNPKSNELVERSSFNSQSGDSKPLKSDRSLNSL 240

Query: 241 DSNSSSEEMQKP 252
           +S+SS EEMQKP
Sbjct: 241 NSSSSPEEMQKP 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083354|ref|XP_002306994.1| predicted protein [Populus trichocarpa] gi|222856443|gb|EEE93990.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/252 (77%), Positives = 225/252 (89%)

Query: 1   MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPL 60
           MKR   S+F I L ++TAFLV+ VR ++VR+SR +RPGSV DLVRRGQLRSDRRGIS PL
Sbjct: 18  MKRGAGSNFVIWLCIATAFLVVSVRVYMVRKSRPSRPGSVADLVRRGQLRSDRRGISSPL 77

Query: 61  KYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLK 120
           KYEDPFNNPLVKVGKSNST+E+ GKVY LAP+TLT+EQQ IHQ+RRSRAYQWKRPTIFLK
Sbjct: 78  KYEDPFNNPLVKVGKSNSTIEIFGKVYHLAPVTLTEEQQAIHQRRRSRAYQWKRPTIFLK 137

Query: 121 EGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKL 180
           EGD +PPDVDPDTVRWIP NHPFATTA+DIDEDLAQNNVYQK GVPFRI+AEHEALQ+KL
Sbjct: 138 EGDPVPPDVDPDTVRWIPTNHPFATTASDIDEDLAQNNVYQKHGVPFRIKAEHEALQRKL 197

Query: 181 EALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPDQAPNGY 240
           EALQNEQKLNKLVID+ NAK+FER F+ NPKS E ++QNPF +QSGD +P + D+APN +
Sbjct: 198 EALQNEQKLNKLVIDTGNAKEFERPFRFNPKSNELVEQNPFKSQSGDSKPSQSDRAPNPF 257

Query: 241 DSNSSSEEMQKP 252
           +S+SSSEEMQKP
Sbjct: 258 NSSSSSEEMQKP 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455623|ref|XP_004145552.1| PREDICTED: uncharacterized protein LOC101205591 [Cucumis sativus] gi|449485086|ref|XP_004157065.1| PREDICTED: uncharacterized protein LOC101232095 [Cucumis sativus]

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 174/251 (69%), Positives = 206/251 (82%), Gaps = 6/251 (2%)

Query: 1   MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPL 60
           M + TR+  AIG  + TA L IV R +++R+SR +  GSV DLVRRGQLRSDRRGIS+PL
Sbjct: 113 MNKCTRNGLAIGFCVVTACLAIVARVYLMRKSRNSHSGSVADLVRRGQLRSDRRGISKPL 172

Query: 61  KYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLK 120
           KY DPFNNPLVKV KSNS++EMCGKVYRLAP+TLTKE+Q IHQKRRSRAYQWKRPT+FLK
Sbjct: 173 KYNDPFNNPLVKVDKSNSSVEMCGKVYRLAPVTLTKEEQNIHQKRRSRAYQWKRPTMFLK 232

Query: 121 EGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKL 180
           EGD IPPDVDPDT+RWIPANHPFATTA+DIDEDLAQNNVYQK GVPFRI+AEHEALQ+KL
Sbjct: 233 EGDSIPPDVDPDTIRWIPANHPFATTASDIDEDLAQNNVYQKHGVPFRIQAEHEALQRKL 292

Query: 181 EALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPDQAPNGY 240
           EALQ++QKLN L ID  + K+FER FK   KS+E ++Q+   +Q+G+ +P      PN +
Sbjct: 293 EALQSDQKLNNLFIDPGSVKEFERPFKSKSKSDEQVEQSSSDHQTGESKP------PNSF 346

Query: 241 DSNSSSEEMQK 251
              SSS+E QK
Sbjct: 347 GGQSSSDEAQK 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457624|ref|XP_002274365.1| PREDICTED: uncharacterized protein LOC100261560 [Vitis vinifera] gi|297745587|emb|CBI40752.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 181/252 (71%), Positives = 201/252 (79%), Gaps = 17/252 (6%)

Query: 1   MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPL 60
           MK+    +FAIGL ++T  LV+ VR ++ R+   +RPGSV DLVRRGQLRSDRRGIS PL
Sbjct: 101 MKKDVGINFAIGLCVATTILVVAVRVYVARKVSSSRPGSVADLVRRGQLRSDRRGISSPL 160

Query: 61  KYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLK 120
           KYEDPFNNPLVKVGKSNST+EMCGKVYRLAP+TLTKEQQ IHQKRRSRAYQWKRPT+FLK
Sbjct: 161 KYEDPFNNPLVKVGKSNSTVEMCGKVYRLAPVTLTKEQQAIHQKRRSRAYQWKRPTMFLK 220

Query: 121 EGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKL 180
           EGD IP DVDPDTVRWIPANHPFATTA++IDE LAQNNVYQK GVPFRI+AEHEALQ+KL
Sbjct: 221 EGDSIPSDVDPDTVRWIPANHPFATTASEIDEGLAQNNVYQKHGVPFRIQAEHEALQRKL 280

Query: 181 EALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPDQAPNGY 240
           EALQ+EQKLNKLVID +NAKDFER FK +  S E   Q P                 N  
Sbjct: 281 EALQSEQKLNKLVIDPTNAKDFERPFK-HLTSHEQAGQGP----------------SNRI 323

Query: 241 DSNSSSEEMQKP 252
            S+SS EEMQKP
Sbjct: 324 GSDSSPEEMQKP 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218043|ref|NP_173507.1| multiple chloroplast division site 1 [Arabidopsis thaliana] gi|26452945|dbj|BAC43549.1| unknown protein [Arabidopsis thaliana] gi|29824121|gb|AAP04021.1| unknown protein [Arabidopsis thaliana] gi|332191908|gb|AEE30029.1| multiple chloroplast division site 1 [Arabidopsis thaliana]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/254 (67%), Positives = 200/254 (78%), Gaps = 19/254 (7%)

Query: 1   MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYN-RPGSVEDLVRRGQLRS-DRRGISR 58
           MK+ + +S  IG+ ++   LV  +RA++VR+SR N R GSV DLVRRGQLRS DRRGIS+
Sbjct: 111 MKKCSVNSIWIGVCITATVLVAAIRAYVVRKSRDNQRAGSVADLVRRGQLRSGDRRGISK 170

Query: 59  PLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIF 118
            L YEDPFNNP VK+ K +ST+EMCGKVYRLAP+TLT+++QTIHQKRRSRAYQWKRPTIF
Sbjct: 171 SLNYEDPFNNPFVKLDKGSSTVEMCGKVYRLAPVTLTEKEQTIHQKRRSRAYQWKRPTIF 230

Query: 119 LKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQK 178
           LKEGD IPPDVDPDTVRWIPANHPFATT +DID+DLAQNNVYQKQGVPFRIRAEHEA+QK
Sbjct: 231 LKEGDSIPPDVDPDTVRWIPANHPFATTVSDIDQDLAQNNVYQKQGVPFRIRAEHEAMQK 290

Query: 179 KLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSE-EPLDQNPFVNQSGDLRPPRPDQAP 237
           KLEALQNE+KLN L IDS NA+DF+R +K + K E E + +N   N +G           
Sbjct: 291 KLEALQNEEKLNNLSIDSQNARDFQRPYKFSAKLEGENIQKNSQENHTG----------- 339

Query: 238 NGYDSNSSSEEMQK 251
                NSSSEE  K
Sbjct: 340 -----NSSSEETHK 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8886939|gb|AAF80625.1|AC069251_18 F2D10.35 [Arabidopsis thaliana]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 171/254 (67%), Positives = 200/254 (78%), Gaps = 19/254 (7%)

Query: 1   MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYN-RPGSVEDLVRRGQLRS-DRRGISR 58
           MK+ + +S  IG+ ++   LV  +RA++VR+SR N R GSV DLVRRGQLRS DRRGIS+
Sbjct: 126 MKKCSVNSIWIGVCITATVLVAAIRAYVVRKSRDNQRAGSVADLVRRGQLRSGDRRGISK 185

Query: 59  PLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIF 118
            L YEDPFNNP VK+ K +ST+EMCGKVYRLAP+TLT+++QTIHQKRRSRAYQWKRPTIF
Sbjct: 186 SLNYEDPFNNPFVKLDKGSSTVEMCGKVYRLAPVTLTEKEQTIHQKRRSRAYQWKRPTIF 245

Query: 119 LKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQK 178
           LKEGD IPPDVDPDTVRWIPANHPFATT +DID+DLAQNNVYQKQGVPFRIRAEHEA+QK
Sbjct: 246 LKEGDSIPPDVDPDTVRWIPANHPFATTVSDIDQDLAQNNVYQKQGVPFRIRAEHEAMQK 305

Query: 179 KLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSE-EPLDQNPFVNQSGDLRPPRPDQAP 237
           KLEALQNE+KLN L IDS NA+DF+R +K + K E E + +N   N +G           
Sbjct: 306 KLEALQNEEKLNNLSIDSQNARDFQRPYKFSAKLEGENIQKNSQENHTG----------- 354

Query: 238 NGYDSNSSSEEMQK 251
                NSSSEE  K
Sbjct: 355 -----NSSSEETHK 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845062|ref|XP_002890412.1| hypothetical protein ARALYDRAFT_472319 [Arabidopsis lyrata subsp. lyrata] gi|297336254|gb|EFH66671.1| hypothetical protein ARALYDRAFT_472319 [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 164/239 (68%), Positives = 197/239 (82%), Gaps = 3/239 (1%)

Query: 1   MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYN-RPGSVEDLVRRGQLRS-DRRGISR 58
           MK+ + +S  IG+ ++   LV  +RA++VR+SR N R GSV DLVRRGQLRS DRRGIS+
Sbjct: 113 MKKCSGNSIWIGICITATVLVAAIRAYVVRKSRDNQRAGSVTDLVRRGQLRSGDRRGISK 172

Query: 59  PLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIF 118
            L YEDPFNNP VK+ K +ST+EMCGKVYRLAP+TLT+++QTIHQKRRSRAYQWKRPTIF
Sbjct: 173 SLNYEDPFNNPFVKLDKGSSTVEMCGKVYRLAPVTLTEKEQTIHQKRRSRAYQWKRPTIF 232

Query: 119 LKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQK 178
           LKEGD IPPDVDP+TVRWIPANHPFATT +DID+DLAQNNVYQKQGVPFRIRAEHEA+QK
Sbjct: 233 LKEGDSIPPDVDPETVRWIPANHPFATTVSDIDQDLAQNNVYQKQGVPFRIRAEHEAMQK 292

Query: 179 KLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSE-EPLDQNPFVNQSGDLRPPRPDQA 236
           KLEALQNE+KLN L IDS NA+DF+R +K + K E E + +N   N +G+      +Q+
Sbjct: 293 KLEALQNEEKLNNLGIDSQNARDFQRPYKFSAKLEGENIQKNSQDNHTGNSSSEETNQS 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508508|ref|XP_003522998.1| PREDICTED: uncharacterized protein LOC100793031 [Glycine max]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 168/251 (66%), Positives = 188/251 (74%), Gaps = 39/251 (15%)

Query: 36  RPGSVEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLT 95
           RPGSV DLVRRGQLRSDRRGISRPLKYEDPFNNP VKVGKS+ST+EMCGKVYRLAP+TLT
Sbjct: 109 RPGSVADLVRRGQLRSDRRGISRPLKYEDPFNNPFVKVGKSDSTVEMCGKVYRLAPVTLT 168

Query: 96  KEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLA 155
           +EQQ  HQKRR RAYQWKRPTIFL+EGDL+PPDVDPDTVRWIPANHPFATTA D+DEDLA
Sbjct: 169 QEQQATHQKRRLRAYQWKRPTIFLREGDLVPPDVDPDTVRWIPANHPFATTATDLDEDLA 228

Query: 156 QNNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERAF----KLNPK 211
           QNNVYQK GVPFRI+AEHEALQKKLEALQN+QKLNKLVID  NAK+FER F    +LN +
Sbjct: 229 QNNVYQKHGVPFRIQAEHEALQKKLEALQNDQKLNKLVIDPINAKEFERPFNSHARLNDQ 288

Query: 212 SE----------------EPLD----QNPF---------------VNQSGDLRPPRPDQA 236
           ++                +P+D    + PF                NQ+     PR D  
Sbjct: 289 ADKSSVNNQEQKHNKLVIDPIDAKEIERPFNSDTRLNDQAEKSSVNNQASASDSPRVDSG 348

Query: 237 PNGYDSNSSSE 247
           PN +DS SS +
Sbjct: 349 PNHFDSTSSED 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807146|ref|NP_001242343.1| uncharacterized protein LOC100812404 [Glycine max] gi|255635109|gb|ACU17912.1| unknown [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/251 (65%), Positives = 183/251 (72%), Gaps = 39/251 (15%)

Query: 36  RPGSVEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLT 95
           RPGSV DLVRRGQLRSDRRGISRPLKYEDPFNNP VKVGKS+ST+EMCGKVYRLAPITLT
Sbjct: 110 RPGSVADLVRRGQLRSDRRGISRPLKYEDPFNNPFVKVGKSDSTVEMCGKVYRLAPITLT 169

Query: 96  KEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLA 155
           +EQQ  HQKRR RAYQWKRPTIFL+EGD +PPDVDPDTVRWIPANHPFATTA D+DEDLA
Sbjct: 170 QEQQATHQKRRLRAYQWKRPTIFLREGDSVPPDVDPDTVRWIPANHPFATTATDLDEDLA 229

Query: 156 QNNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERAF--------- 206
           QNNVYQK G PFRI+AEHEALQKKLEALQN+QKL+KLVID  NAK+FER F         
Sbjct: 230 QNNVYQKHGAPFRIQAEHEALQKKLEALQNDQKLDKLVIDPINAKEFERPFNSHARLNDQ 289

Query: 207 -----------KLNPKSEEPLDQNPFV-------------------NQSGDLRPPRPDQA 236
                      KLN +  +P++   F                    NQ+ D   PR D  
Sbjct: 290 ADKSSANNQEQKLNKQVIDPINAKEFERPFNSHTRLNDQAEKSSAHNQASDSDSPRIDSG 349

Query: 237 PNGYDSNSSSE 247
           PN ++S SS +
Sbjct: 350 PNHFESTSSED 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2030512	349	MCD1 "AT1G20830" [Arabidopsis	0.900	0.650	0.713	8e-85

TAIR|locus:2030512 MCD1 "AT1G20830" [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 164/230 (71%), Positives = 194/230 (84%)

Query:     1 MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYN-RPGSVEDLVRRGQLRS-DRRGISR 58
             MK+ + +S  IG+ ++   LV  +RA++VR+SR N R GSV DLVRRGQLRS DRRGIS+
Sbjct:   111 MKKCSVNSIWIGVCITATVLVAAIRAYVVRKSRDNQRAGSVADLVRRGQLRSGDRRGISK 170

Query:    59 PLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIF 118
              L YEDPFNNP VK+ K +ST+EMCGKVYRLAP+TLT+++QTIHQKRRSRAYQWKRPTIF
Sbjct:   171 SLNYEDPFNNPFVKLDKGSSTVEMCGKVYRLAPVTLTEKEQTIHQKRRSRAYQWKRPTIF 230

Query:   119 LKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQK 178
             LKEGD IPPDVDPDTVRWIPANHPFATT +DID+DLAQNNVYQKQGVPFRIRAEHEA+QK
Sbjct:   231 LKEGDSIPPDVDPDTVRWIPANHPFATTVSDIDQDLAQNNVYQKQGVPFRIRAEHEAMQK 290

Query:   179 KLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSE-EPLDQNPFVNQSGD 227
             KLEALQNE+KLN L IDS NA+DF+R +K + K E E + +N   N +G+
Sbjct:   291 KLEALQNEEKLNNLSIDSQNARDFQRPYKFSAKLEGENIQKNSQENHTGN 340


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      252       252   0.00082  114 3  11 22  0.49    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.68u 0.13s 27.81t   Elapsed:  00:00:01
  Total cpu time:  27.68u 0.13s 27.81t   Elapsed:  00:00:01
  Start:  Fri May 10 11:14:15 2013   End:  Fri May 10 11:14:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	86.33

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=86.33  E-value=0.8  Score=34.20  Aligned_cols=8  Identities=63%  Similarity=1.215  Sum_probs=4.3

Q ss_pred             CCCccCCC
Q 025494           58 RPLKYEDP   65 (252)
Q Consensus        58 ~plkYeDP   65 (252)
                      -|-+||||
T Consensus        55 DP~TYEDP   62 (75)
T PF14575_consen   55 DPHTYEDP   62 (75)
T ss_dssp             -GGGSSSH
T ss_pred             CcccccCH
Confidence            45566665

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 4e-07
 Identities = 33/240 (13%), Positives = 59/240 (24%), Gaps = 70/240 (29%)

Query: 23  VVRAF-----IVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSN 77
              AF     I+  +R+     V D      L +          +               
Sbjct: 258 AWNAFNLSCKILLTTRFK---QVTD-----FLSAATTTHISLDHHSMTLTPD-------- 301

Query: 78  STMEMCGKVYRLAPITLTKEQQTIH-----------QKRRSRAYQWKRPTI--------- 117
               +  K     P  L +E  T +           +   +    WK             
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 118 ---FLKEGDL---------IPPDVDPDTVRWIPA-------NHPFATTANDIDEDLAQNN 158
               L+  +           PP         IP             +    +   L + +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSA------HIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 159 VYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQ 218
           + +KQ     I        +    L+NE  L++ ++D  N     + F  +      LDQ
Sbjct: 416 LVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIP---KTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 26/197 (13%), Positives = 63/197 (31%), Gaps = 53/197 (26%)

Query: 85  KVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPA----- 139
              RL    L+K+++ + +              F+   +++  +       ++ +     
Sbjct: 63  GTLRLFWTLLSKQEEMVQK--------------FV--EEVLRINYK-----FLMSPIKTE 101

Query: 140 -NHPFATTANDIDE-DLAQNN--VYQKQGVPFRIRAEHEALQKKLEALQNEQKL------ 189
              P   T   I++ D   N+  V+ K  V  R++  +  L++ L  L+  + +      
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQ-PYLKLRQALLELRPAKNVLIDGVL 159

Query: 190 --NK--LVIDSSNAKDFERAF-------KLNPKSEEPLDQNPFVNQSGDLRPP---RPDQ 235
              K  + +D   +   +           L   +               + P    R D 
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 236 APNG-YDSNSSSEEMQK 251
           + N     +S   E+++
Sbjct: 220 SSNIKLRIHSIQAELRR 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00