Citrus Sinensis ID: 025538
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 251 | ||||||
| 225461782 | 348 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.721 | 0.796 | 1e-118 | |
| 388506724 | 353 | unknown [Medicago truncatula] | 0.996 | 0.708 | 0.8 | 1e-117 | |
| 356544128 | 358 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.698 | 0.788 | 1e-114 | |
| 449438891 | 351 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.715 | 0.770 | 1e-112 | |
| 224116976 | 352 | predicted protein [Populus trichocarpa] | 1.0 | 0.713 | 0.784 | 1e-111 | |
| 356549626 | 344 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.726 | 0.752 | 1e-109 | |
| 297830030 | 350 | hypothetical protein ARALYDRAFT_478900 [ | 1.0 | 0.717 | 0.701 | 1e-101 | |
| 22331091 | 253 | protein trichome birefringence-like 41 [ | 1.0 | 0.992 | 0.694 | 2e-99 | |
| 79607892 | 356 | protein trichome birefringence-like 41 [ | 1.0 | 0.705 | 0.694 | 2e-99 | |
| 222424963 | 356 | AT3G14850 [Arabidopsis thaliana] | 1.0 | 0.705 | 0.694 | 3e-99 |
| >gi|225461782|ref|XP_002283611.1| PREDICTED: uncharacterized protein LOC100250342 [Vitis vinifera] gi|302142825|emb|CBI20120.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/251 (79%), Positives = 222/251 (88%)
Query: 1 MFVGDSLSRNQWQSLTCMLHSSVPYAKYNLTRVDDVSIFTFTDYRVKVMLDRNVYLVDTV 60
MF+GDSLSRNQWQSLTCMLH+SVP +YN+ RV DVS FTF DY VKVMLDR+VYLVD V
Sbjct: 98 MFIGDSLSRNQWQSLTCMLHASVPQTQYNVMRVGDVSTFTFMDYDVKVMLDRSVYLVDVV 157
Query: 61 RERIGRVLKLDSIQGGKLWKGIDMLIFNTWHWWNRRGPTQPWDFIKIGNKTLKDMDRMIA 120
E+IGRVLKLDSIQGGKLWK IDMLIFNTWHWWNRRGP QPWD+I+ G K KDMDRMIA
Sbjct: 158 HEKIGRVLKLDSIQGGKLWKNIDMLIFNTWHWWNRRGPMQPWDYIQSGKKIFKDMDRMIA 217
Query: 121 FEKALTTWGHWVDANINTSKSMVFFQGISPSHYNGTEWHEPSAKSCIRQREPVLGSTYPG 180
FE+ALTTW +WVD NI+ +KS VFFQG+SPSHYNGT W EP AK+CI ++EP+L STYPG
Sbjct: 218 FEEALTTWANWVDLNIDPTKSKVFFQGVSPSHYNGTSWGEPGAKNCIHEKEPLLVSTYPG 277
Query: 181 GLPPAVGVLKKALRKIKKPVKLLDITNLSLLRKDGHPSIYGLGGPTGMDCSHWCLAGVPD 240
GLPPA+GV K L K+KKPV LLD+TNLSLLRKDGHPS+YGLGGPTGMDCSHWCLAGVPD
Sbjct: 278 GLPPALGVQKGVLSKMKKPVVLLDVTNLSLLRKDGHPSMYGLGGPTGMDCSHWCLAGVPD 337
Query: 241 TWNEILYNMIL 251
TWNEILYN+IL
Sbjct: 338 TWNEILYNLIL 348
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388506724|gb|AFK41428.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356544128|ref|XP_003540507.1| PREDICTED: uncharacterized protein LOC100817531 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449438891|ref|XP_004137221.1| PREDICTED: uncharacterized protein LOC101208056 [Cucumis sativus] gi|449517375|ref|XP_004165721.1| PREDICTED: uncharacterized LOC101208056 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224116976|ref|XP_002317443.1| predicted protein [Populus trichocarpa] gi|222860508|gb|EEE98055.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356549626|ref|XP_003543193.1| PREDICTED: uncharacterized protein LOC100794317 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297830030|ref|XP_002882897.1| hypothetical protein ARALYDRAFT_478900 [Arabidopsis lyrata subsp. lyrata] gi|297328737|gb|EFH59156.1| hypothetical protein ARALYDRAFT_478900 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|22331091|ref|NP_188103.2| protein trichome birefringence-like 41 [Arabidopsis thaliana] gi|17065212|gb|AAL32760.1| Unknown protein [Arabidopsis thaliana] gi|20259978|gb|AAM13336.1| unknown protein [Arabidopsis thaliana] gi|332642055|gb|AEE75576.1| protein trichome birefringence-like 41 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|79607892|ref|NP_974314.2| protein trichome birefringence-like 41 [Arabidopsis thaliana] gi|332642054|gb|AEE75575.1| protein trichome birefringence-like 41 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|222424963|dbj|BAH20432.1| AT3G14850 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 251 | ||||||
| TAIR|locus:2099402 | 356 | TBL41 "TRICHOME BIREFRINGENCE- | 1.0 | 0.705 | 0.694 | 8.4e-97 | |
| TAIR|locus:2029959 | 380 | TBL38 "AT1G29050" [Arabidopsis | 0.972 | 0.642 | 0.556 | 1.3e-77 | |
| TAIR|locus:2055425 | 385 | TBL37 "AT2G34070" [Arabidopsis | 0.972 | 0.633 | 0.554 | 8.1e-76 | |
| TAIR|locus:2041574 | 367 | TBL39 "AT2G42570" [Arabidopsis | 0.988 | 0.675 | 0.528 | 9.3e-75 | |
| TAIR|locus:2055878 | 364 | AT2G31110 "AT2G31110" [Arabido | 0.988 | 0.681 | 0.528 | 2.8e-73 | |
| TAIR|locus:2037498 | 359 | TBL42 "TRICHOME BIREFRINGENCE- | 0.996 | 0.696 | 0.496 | 8e-69 | |
| TAIR|locus:2178813 | 402 | PMR5 "AT5G58600" [Arabidopsis | 1.0 | 0.624 | 0.445 | 3.6e-57 | |
| TAIR|locus:2170184 | 608 | TBR [Arabidopsis thaliana (tax | 0.972 | 0.401 | 0.403 | 3.3e-47 | |
| TAIR|locus:2088659 | 556 | TBL1 "AT3G12060" [Arabidopsis | 0.988 | 0.446 | 0.401 | 1.8e-46 | |
| TAIR|locus:2080280 | 379 | TBL36 "AT3G54260" [Arabidopsis | 0.956 | 0.633 | 0.393 | 2.1e-45 |
| TAIR|locus:2099402 TBL41 "TRICHOME BIREFRINGENCE-LIKE 41" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 175/252 (69%), Positives = 199/252 (78%)
Query: 1 MFVGDSLSRNQWQSLTCMLHSSVPYAKYNLTRVDDVSIFTFTDYRVKVMLDRNVYLVDTV 60
MFVGDSLS NQWQSL CMLHSSVP + Y LT +S +TF +Y +++ LDRNVYLVD V
Sbjct: 104 MFVGDSLSLNQWQSLACMLHSSVPNSTYTLTTQGSISTYTFKEYGLELKLDRNVYLVDIV 163
Query: 61 RERIGRVLKLDSIQGGKLWKGIDMLIFNTWHWWNRRGPTQPWDFIKIGNKTLKDMDRMIA 120
RE+IGRVLKLDSI GK W +D LIFNTWHWW+RRGP QPWD I+IG KDMDR+ A
Sbjct: 164 REKIGRVLKLDSINDGKNWVEMDTLIFNTWHWWSRRGPAQPWDLIQIGTNVTKDMDRVAA 223
Query: 121 FEKALTTWGHWVDANINTSKSMVFFQGISPSHYNGTEWHEPSAKSCIRQREPVLGSTYPG 180
FE AL TWG WVD +NT K+ VFFQGISPSHY G W EP+AKSC+ Q+EP+LG+ YPG
Sbjct: 224 FEIALGTWGKWVDTVLNTKKTRVFFQGISPSHYKGVLWGEPAAKSCVGQKEPLLGTKYPG 283
Query: 181 GLPPAVGVLKKALRKIKKPVKLLDITNLSLLRKDGHPSIYGLGGPTGM-DCSHWCLAGVP 239
GLP VGVLK+AL KI KPV LLDIT LSLLRKD HPS+YGLGG DCSHWCL+GVP
Sbjct: 284 GLPAEVGVLKRALGKISKPVTLLDITMLSLLRKDAHPSVYGLGGRNSSGDCSHWCLSGVP 343
Query: 240 DTWNEILYNMIL 251
DTWNEILYN ++
Sbjct: 344 DTWNEILYNYMV 355
|
|
| TAIR|locus:2029959 TBL38 "AT1G29050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2055425 TBL37 "AT2G34070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2041574 TBL39 "AT2G42570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2055878 AT2G31110 "AT2G31110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037498 TBL42 "TRICHOME BIREFRINGENCE-LIKE 42" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178813 PMR5 "AT5G58600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2170184 TBR [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2080280 TBL36 "AT3G54260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00027904001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (348 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 251 | |||
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 2e-94 | |
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 3e-93 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
Score = 277 bits (711), Expect = 2e-94
Identities = 119/257 (46%), Positives = 154/257 (59%), Gaps = 12/257 (4%)
Query: 1 MFVGDSLSRNQWQSLTCMLHSSVPYAKYNLTRVDDVSIFTFTDYRVKVMLDRNVYLVDT- 59
+FVGDSLSRNQW+SL C+L P L R + F F DY V + + +LV++
Sbjct: 19 VFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRLFRFRFKDYNVTIEFYWSPFLVESD 78
Query: 60 VRERIGRVLKLDSI--QGGKLWKGIDMLIFNTWHWWNRRGPTQPWDFIKIGNKTLKDMDR 117
E RVLKLDSI + KLW G D+L+FN+ HWW R WD+ + N K+M
Sbjct: 79 NAEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWWLHRKVYIGWDYCQKSN--YKEMGF 136
Query: 118 MIAFEKALTTWGHWVDANINTSKSMVFFQGISPSHYNGTEWHEPSAKSCIRQREPVLGST 177
+ A+ KAL TW WVD N+ SK+ VFF+ SP H+ G EW+ + SC + EP+LGS
Sbjct: 137 LDAYRKALETWAKWVDVNLPPSKTRVFFRTFSPVHFEGGEWN--TGGSC-YETEPLLGSE 193
Query: 178 YPGGLPPAVGVLKKALRKI--KKPVKLLDITNLSLLRKDGHPSIYGLGGPTGM--DCSHW 233
Y G P + ++ + L + K PVKLLDIT LS RKDGHPS+Y GP DC HW
Sbjct: 194 YKGLTPEMIDIVNEVLSRAAMKTPVKLLDITLLSQYRKDGHPSVYRKPGPPKKEQDCLHW 253
Query: 234 CLAGVPDTWNEILYNMI 250
CL GVPDTWNE+L ++
Sbjct: 254 CLPGVPDTWNELLLALL 270
|
The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 251 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 100.0 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 98.14 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-93 Score=661.24 Aligned_cols=251 Identities=49% Similarity=0.961 Sum_probs=230.4
Q ss_pred CeeeccCChhHHHHHHHhhcccccCceeeeeecCceEEEEEeeCcEEEEEEeecceeeeeecccceeEEeccccc-CCCc
Q 025538 1 MFVGDSLSRNQWQSLTCMLHSSVPYAKYNLTRVDDVSIFTFTDYRVKVMLDRNVYLVDTVRERIGRVLKLDSIQG-GKLW 79 (251)
Q Consensus 1 ~FVGDSl~RNq~eSLlClL~~~~~~~~~~~~~~~~~~~~~f~~~n~Tv~~~wspfLV~~~~~~~~~~l~lD~~~~-~~~w 79 (251)
|||||||+|||||||+|||++++|+.++....+++.++|+|++|||||+||||||||+.+..+..++|+||++++ ++.|
T Consensus 124 ~FVGDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~~~~~l~LD~id~~a~~w 203 (387)
T PLN02629 124 MFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQGKRVLKLEEISGNANAW 203 (387)
T ss_pred EEeccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCCCceeEEecCcchhhhhh
Confidence 799999999999999999999998766555567788999999999999999999999998776667999999997 6899
Q ss_pred ccccEEEEecccccccCCCCCCcceeecCceeccCCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeecCCCCCCCCCc
Q 025538 80 KGIDMLIFNTWHWWNRRGPTQPWDFIKIGNKTLKDMDRMIAFEKALTTWGHWVDANINTSKSMVFFQGISPSHYNGTEWH 159 (251)
Q Consensus 80 ~~~DvlV~ntG~Ww~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~al~t~~~~v~~~~~~~~~~vf~Rt~SP~Hf~~g~W~ 159 (251)
.++|||||||||||.+++..++|+|++.|+.++++|++.+||++||+||++||++++++.+++|||||+||+||+||+||
T Consensus 204 ~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~Wn 283 (387)
T PLN02629 204 RDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWS 283 (387)
T ss_pred ccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCcC
Confidence 99999999999999999988899999999998999999999999999999999999998999999999999999999999
Q ss_pred cccc---ccccccccccCCCCCCCCCChHHHHHHHHHHhcCCceEEeecccccccccCCCCCccCCCC--------CCCC
Q 025538 160 EPSA---KSCIRQREPVLGSTYPGGLPPAVGVLKKALRKIKKPVKLLDITNLSLLRKDGHPSIYGLGG--------PTGM 228 (251)
Q Consensus 160 ~gG~---g~C~~~t~P~~~~~~~~~~~~~~~~v~~~~~~~~~~v~lLdit~ls~~R~DgHp~~y~~~~--------~~~~ 228 (251)
+||. |+|+++|+|+.++++.++...+++++++++++++.+|+|||||+||++|||||||+|+... ..++
T Consensus 284 ~gg~~~~~~C~~et~P~~~~~~~~~~~~~~~~ve~v~~~~~~~v~lLDIT~ls~lR~DgHPs~Y~~~~~~~~~~~p~~~~ 363 (387)
T PLN02629 284 AGASTTTKNCYGETTPMSGMTYPGAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYSGDLSPSQRANPDRSA 363 (387)
T ss_pred CCCCCCCCCCccCCccCcCccccCcchHHHHHHHHHHHhcCCceEEEechhhhhcCCCCCcccccCCCchhhccCCCCCC
Confidence 9862 6899999999977777777777889999999999999999999999999999999996431 2478
Q ss_pred CccccccCCchhHHHHHHHHhhC
Q 025538 229 DCSHWCLAGVPDTWNEILYNMIL 251 (251)
Q Consensus 229 DC~HWClPGv~D~WNelL~~~L~ 251 (251)
||+||||||||||||||||++|+
T Consensus 364 DC~HWCLPGvpDTWNelL~a~L~ 386 (387)
T PLN02629 364 DCSHWCLPGLPDTWNQLFYTALF 386 (387)
T ss_pred CcccccCCCCCccHHHHHHHHHh
Confidence 99999999999999999999985
|
|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00