Citrus Sinensis ID: 025563
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 251 | 2.2.26 [Sep-21-2011] | |||||||
| P31300 | 374 | Cysteine synthase, chloro | N/A | no | 0.856 | 0.574 | 0.716 | 3e-84 | |
| O81155 | 386 | Cysteine synthase, chloro | N/A | no | 0.856 | 0.556 | 0.716 | 2e-83 | |
| Q43317 | 325 | Cysteine synthase OS=Citr | N/A | no | 0.868 | 0.670 | 0.720 | 3e-83 | |
| P47999 | 392 | Cysteine synthase, chloro | no | no | 0.856 | 0.548 | 0.716 | 4e-83 | |
| F4K5T2 | 323 | Bifunctional cystathionin | no | no | 0.896 | 0.696 | 0.714 | 6e-82 | |
| Q9XEA8 | 325 | Cysteine synthase OS=Oryz | no | no | 0.864 | 0.667 | 0.700 | 2e-80 | |
| O81154 | 325 | Cysteine synthase OS=Sola | N/A | no | 0.872 | 0.673 | 0.698 | 2e-80 | |
| O23733 | 322 | Cysteine synthase OS=Bras | N/A | no | 0.856 | 0.667 | 0.697 | 3e-80 | |
| Q43725 | 430 | Cysteine synthase, mitoch | no | no | 0.856 | 0.5 | 0.688 | 6e-80 | |
| P47998 | 322 | Cysteine synthase OS=Arab | no | no | 0.856 | 0.667 | 0.697 | 7e-80 |
| >sp|P31300|CYSKP_CAPAN Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 311 bits (797), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 186/215 (86%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I +D TQLIGNTPMVYLN +V GCVA IAAKLE+MEPCCSVKDRI SMI DAEEKGLI+
Sbjct: 67 IAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLIS 126
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGK+VL+E T GNTGIGLAFIAA RGYKLI+ MP+ S+ERR++L+A GAE+ L D A G
Sbjct: 127 PGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKG 186
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G + K EEIL+NTP+ ++ +QF+NPANPKIHYETTGPEIW+D+ G +DILVAGIGTGG
Sbjct: 187 MKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKGKIDILVAGIGTGG 246
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T++G+GR+LKEKNPNIK+ GVEPTES +L+GG+PG
Sbjct: 247 TISGTGRYLKEKNPNIKIIGVEPTESNVLSGGKPG 281
|
Capsicum annuum (taxid: 4072) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 7 |
| >sp|O81155|CYSKP_SOLTU Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 185/215 (86%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I +D TQLIGNTPMVYLN + GCVA IAAKLE+MEPCCSVKDRI SMI DAEEKGLI+
Sbjct: 69 IAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLIS 128
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGK+VL+E T GNTGIGLAFIAA RGYKLI+ MP+ S+ERR++L+A GAE+ L D A G
Sbjct: 129 PGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKG 188
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G + K EEIL+NTP+ ++ +QF+NPANPKIHYETTGPEIW+D+ G +DILVAGIGTGG
Sbjct: 189 MKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKGKIDILVAGIGTGG 248
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG+GRFLKE+NPNIK+ GVEPTES +L+GG+PG
Sbjct: 249 TITGTGRFLKEQNPNIKIIGVEPTESNVLSGGKPG 283
|
Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q43317|CYSK_CITLA Cysteine synthase OS=Citrullus lanatus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (788), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 157/218 (72%), Positives = 185/218 (84%)
Query: 13 KRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKG 72
K I KD T+LIGNTP+VYLN VVDGCVAR+AAKLEMMEPC SVKDRI SMI DAE KG
Sbjct: 5 KSTIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKG 64
Query: 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132
LITPG+SVLIE T GNTGIGLAFIAA +GY+LII MP+ S+ERR +LRA GAE+ L D
Sbjct: 65 LITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDP 124
Query: 133 AGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIG 192
A G +G ++K EEI + TPN ++ +QFENPANPKIHYETTGPEIW+ SGG +D LV+GIG
Sbjct: 125 ARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGKIDALVSGIG 184
Query: 193 TGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
TGGTVTG+G++LKE+NPNIK+YGVEP ESA+L+GG+PG
Sbjct: 185 TGGTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPG 222
|
Produces L-cysteine from O-acetyl-L-serine and hydrogen sulfide. Can also use pyrazole and 3,4-dihydroxypyridine instead of the hydrogen sulfide to produce two plant specific non-protein amino acids beta-pyrazolylalanine and L-mimosine. Citrullus lanatus (taxid: 3654) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|P47999|CYSKP_ARATH Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 182/215 (84%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I +A QLIG TPMVYLNNVV GCVA +AAKLE+MEPCCSVKDRI SMI DAEEKGLIT
Sbjct: 75 IADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLIT 134
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKSVL+E+T GNTGIGLAFIAA +GYKLI+ MP+ S+ERR++LRA GAE+ L + A G
Sbjct: 135 PGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKG 194
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
G ++K EEIL TPN +M +QF+NPANPKIHYETTGPEIW+D+ G +DILVAGIGTGG
Sbjct: 195 MTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWEDTRGKIDILVAGIGTGG 254
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG GRF+KE+ P +KV GVEPTESA+L+GG+PG
Sbjct: 255 TITGVGRFIKERKPELKVIGVEPTESAILSGGKPG 289
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|F4K5T2|CGL_ARATH Bifunctional cystathionine gamma-lyase/cysteine synthase OS=Arabidopsis thaliana GN=DES1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (777), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 163/228 (71%), Positives = 189/228 (82%), Gaps = 3/228 (1%)
Query: 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66
MED + IK D T+LIGNTPMVYLN +VDGCVARIAAKLEMMEPC S+KDRIA SMIK
Sbjct: 1 MED---RVLIKNDVTELIGNTPMVYLNKIVDGCVARIAAKLEMMEPCSSIKDRIAYSMIK 57
Query: 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126
DAE+KGLITPGKS LIE TGGNTGIGLA I A RGYK+I++MPS S+ERRI+LRALGAE
Sbjct: 58 DAEDKGLITPGKSTLIEATGGNTGIGLASIGASRGYKVILLMPSTMSLERRIILRALGAE 117
Query: 127 VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
V+L D + G +G L K +EILS TP G++ QF NP NP+IHY TTGPEIW+DS G VDI
Sbjct: 118 VHLTDISIGIKGQLEKAKEILSKTPGGYIPHQFINPENPEIHYRTTGPEIWRDSAGKVDI 177
Query: 187 LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLF 234
LVAG+GTGGTVTG+G+FLKEKN +IKV VEP+ESA+L+GG+PG L
Sbjct: 178 LVAGVGTGGTVTGTGKFLKEKNKDIKVCVVEPSESAVLSGGKPGPHLI 225
|
Involved in maintaining Cys homeostasis through the desulfuration of L-cysteine. Probably unable to interact with SAT and to form the decameric Cys synthase complex (CSC) and is therefore not an enzymatically true OASTL protein. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9XEA8|CYSK2_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (765), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/217 (70%), Positives = 183/217 (84%)
Query: 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
++I D T LIGNTP+VYLN VVDGC A+IAAKLE+MEPC SVKDRI SMI DAEEKGL
Sbjct: 6 QSIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGL 65
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133
ITPGKSVLIE T GNTGIGLAF+AA +GYKLI+ MP+ SMERRI+L+A GAE+ L D
Sbjct: 66 ITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPL 125
Query: 134 GGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGT 193
G +G ++K +E+ + PN ++ +QFENPANPKIHYETTGPEIWK + G VDILV+GIGT
Sbjct: 126 LGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGKVDILVSGIGT 185
Query: 194 GGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GGTVTG+G++LKE+NP IK+YGVEPTESA+L+GG+PG
Sbjct: 186 GGTVTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPG 222
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O81154|CYSK_SOLTU Cysteine synthase OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (764), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 153/219 (69%), Positives = 181/219 (82%)
Query: 12 HKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEK 71
K I KD T+LIGNTP+VYLNNVVDGCVAR+AAKLE MEPC SVKDRI SMI DAEEK
Sbjct: 4 EKIGIAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEK 63
Query: 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
GLI PG+SVLIE T GNTG+GLAF+AA +GYKLII MPS S+ERRI+LR +E+ L D
Sbjct: 64 GLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELVLTD 123
Query: 132 QAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGI 191
A G +G + K EEI + TPN ++ +QFENPANPKIHYETTGPEIWK S G VD L +GI
Sbjct: 124 PAKGMKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSNGKVDALASGI 183
Query: 192 GTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GTGGT+TGSG++L+E+NPN+K+YGVEP ESA+L+GG+PG
Sbjct: 184 GTGGTITGSGKYLREQNPNVKLYGVEPVESAILSGGKPG 222
|
Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O23733|CYSK1_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/215 (69%), Positives = 180/215 (83%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI SMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIK 64
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+SVLIE T GNTG+GLAF AA +GYKLII MP+ S+ERRI+L A G E+ L D A G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKG 124
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G + K EEIL+ TPNG+M +QFENPANPKIHYETTGPEIWK + G +D V+GIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTDGKIDGFVSGIGTGG 184
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG+G++LKE+NPN+K+YGVEP ESA+L+GG+PG
Sbjct: 185 TITGAGKYLKEQNPNVKLYGVEPIESAILSGGKPG 219
|
Brassica juncea (taxid: 3707) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q43725|CYSKM_ARATH Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 148/215 (68%), Positives = 177/215 (82%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I + +QLIG TPMVYLN++ GCVA IAAKLE+MEPCCSVKDRI SM+ DAE+KG I+
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKSVL+E T GNTGIGLAFIAA RGY+LI+ MP+ SMERR++L+A GAE+ L D A G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
G ++K EEIL NTP+ +M +QF+NPANPKIHYETTGPEIW D+ G VDI VAGIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG GRF+KEKNP +V GVEPTES +L+GG+PG
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P47998|CYSK1_ARATH Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 150/215 (69%), Positives = 179/215 (83%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI SMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+SVLIE T GNTG+GLAF AA +GYKLII MP+ S ERRI+L A G E+ L D A G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G + K EEIL+ TPNG+M +QFENPANPKIHYETTGPEIWK +GG +D V+GIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG+G++LKE+N N+K+YGVEP ESA+L+GG+PG
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 251 | ||||||
| 363814498 | 324 | uncharacterized protein LOC100775420 [Gl | 0.876 | 0.679 | 0.745 | 2e-95 | |
| 351724467 | 324 | cysteine synthase [Glycine max] gi|12650 | 0.876 | 0.679 | 0.727 | 2e-93 | |
| 255636625 | 242 | unknown [Glycine max] | 0.872 | 0.904 | 0.735 | 3e-93 | |
| 255542388 | 332 | cysteine synthase, putative [Ricinus com | 0.916 | 0.692 | 0.769 | 4e-90 | |
| 356557036 | 321 | PREDICTED: cysteine synthase-like [Glyci | 0.860 | 0.672 | 0.777 | 7e-88 | |
| 224130748 | 331 | predicted protein [Populus trichocarpa] | 0.880 | 0.667 | 0.761 | 3e-87 | |
| 255542384 | 256 | cysteine synthase, putative [Ricinus com | 0.884 | 0.867 | 0.76 | 8e-87 | |
| 388508804 | 323 | unknown [Medicago truncatula] | 0.876 | 0.681 | 0.740 | 8e-87 | |
| 359487834 | 323 | PREDICTED: cysteine synthase-like [Vitis | 0.876 | 0.681 | 0.768 | 8e-87 | |
| 359487838 | 323 | PREDICTED: cysteine synthase-like [Vitis | 0.876 | 0.681 | 0.763 | 2e-86 |
| >gi|363814498|ref|NP_001242884.1| uncharacterized protein LOC100775420 [Glycine max] gi|255645072|gb|ACU23035.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 164/220 (74%), Positives = 194/220 (88%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
AIKKDAT+L+GNTPMV+LNN+V GCVARIAAKLE M+ CCSVKDRIALSMI+DAE+KGLI
Sbjct: 7 AIKKDATELVGNTPMVFLNNIVVGCVARIAAKLEYMQACCSVKDRIALSMIEDAEKKGLI 66
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
TPGK+VL+E T GNTGIGLAFIAALRGYKL + MPS S+ER+I+LRA GAEVYL D A
Sbjct: 67 TPGKTVLVEYTSGNTGIGLAFIAALRGYKLQVTMPSYVSLERKIILRAFGAEVYLTDPAK 126
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194
G +G+++K EE+L+ TP+ FM QFENPANP IHYETTGPEIW+DSGG +D LVAGIGTG
Sbjct: 127 GIDGVIQKAEELLAKTPDSFMLNQFENPANPNIHYETTGPEIWRDSGGKIDALVAGIGTG 186
Query: 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLF 234
G++ G+GRFL+EKNP+IK+YGVEP ESA+LNGGQPG+ L
Sbjct: 187 GSIAGAGRFLREKNPDIKLYGVEPAESAVLNGGQPGKHLI 226
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351724467|ref|NP_001235267.1| cysteine synthase [Glycine max] gi|126508784|gb|ABO15567.1| cysteine synthase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/220 (72%), Positives = 192/220 (87%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
AIKKDAT+L+GNTPMV+LNN+V GCVARIAAKLE M+ CCSVKDRIALSMI+DAE+KGLI
Sbjct: 7 AIKKDATELVGNTPMVFLNNIVVGCVARIAAKLEYMQACCSVKDRIALSMIEDAEKKGLI 66
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
TPGK+VL+E T GNTGIGLAFIAALRGYKL + MPS S+ER+I+LRA GAEVYL D A
Sbjct: 67 TPGKTVLVEYTSGNTGIGLAFIAALRGYKLQVTMPSYVSLERKIILRAFGAEVYLTDPAK 126
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194
G +G+++K EE+++ TP+ FM QFENPANP IHYETTGPEIW+DSG +D LV+GIGTG
Sbjct: 127 GIDGVIQKAEELIAKTPDSFMLNQFENPANPNIHYETTGPEIWRDSGEKIDALVSGIGTG 186
Query: 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLF 234
G++ G+GRFL+EKNP+IK+YGVEP ES +LNGGQPG+ L
Sbjct: 187 GSIAGAGRFLREKNPDIKLYGVEPAESPVLNGGQPGKHLI 226
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255636625|gb|ACU18650.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 161/219 (73%), Positives = 191/219 (87%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
IKKDAT+LIGNTPMVYLNN+VDGCVARIAAKLE M+ CCSVKDRIALSMI+DAE+KGLIT
Sbjct: 7 IKKDATELIGNTPMVYLNNIVDGCVARIAAKLEYMQACCSVKDRIALSMIEDAEKKGLIT 66
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGK+VL+E T GNTGIGLAFIAALRGYKL + MPS S+ER+I+LRA GAEVYL D A G
Sbjct: 67 PGKTVLVEYTSGNTGIGLAFIAALRGYKLQVTMPSYVSLERKIILRAFGAEVYLTDPAKG 126
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G+++K EE+++ TP+ FM QFENPANP IHY TTGPEIW+DSG +D LV+GIGTGG
Sbjct: 127 IDGVIQKAEELIAKTPDSFMLNQFENPANPNIHYGTTGPEIWRDSGEKIDALVSGIGTGG 186
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLF 234
++ G+GRFL+EKNP+IK+YGVEP ES +LNGGQPG+ L
Sbjct: 187 SIAGAGRFLREKNPDIKLYGVEPAESPVLNGGQPGKHLI 225
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542388|ref|XP_002512257.1| cysteine synthase, putative [Ricinus communis] gi|223548218|gb|EEF49709.1| cysteine synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 177/230 (76%), Positives = 199/230 (86%)
Query: 1 MVLEASMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRI 60
M L + +D IKKD T+LIGNTPMVYLNN+VDGCVARIAAKLEMMEP SVKDRI
Sbjct: 1 MGLSNTWKDMEANCEIKKDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPVSSVKDRI 60
Query: 61 ALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL 120
A SMIKDAE+KGLITPGK+VLIE T GNTGIGLA IAA++GYK+I+ MP+ S+ERRIVL
Sbjct: 61 AYSMIKDAEDKGLITPGKTVLIEPTSGNTGIGLAAIAAMKGYKIILTMPASMSLERRIVL 120
Query: 121 RALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDS 180
RALGAEVYL D A GF G+L K +EIL+ TPNG++FRQFENPANPKIHYETTGPEIW+DS
Sbjct: 121 RALGAEVYLTDPAKGFNGVLEKTDEILNKTPNGYVFRQFENPANPKIHYETTGPEIWRDS 180
Query: 181 GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GG VD LVAGIGTGGTVTG+GRFLKEKN +IKVYGVEP ESA+LNGG+PG
Sbjct: 181 GGKVDALVAGIGTGGTVTGAGRFLKEKNSDIKVYGVEPVESAILNGGRPG 230
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557036|ref|XP_003546824.1| PREDICTED: cysteine synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 168/216 (77%), Positives = 193/216 (89%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
AIK+D T+LIGNTPMVYLN VV+GCVARIAAKLE MEPC SVKDR+ALSMIKDAE+KGLI
Sbjct: 4 AIKQDVTELIGNTPMVYLNKVVEGCVARIAAKLESMEPCSSVKDRLALSMIKDAEDKGLI 63
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
TPGK+VL+ETT GNTGIGLAFIAAL+GY+LI+ MP+ S+ERR+VLRALGAE++L D A
Sbjct: 64 TPGKTVLVETTSGNTGIGLAFIAALKGYRLILAMPASMSLERRVVLRALGAELHLTDPAK 123
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194
GF+G L+K EE+L TP+ FM QFENPANPKIHYETTGPEIW DSGG VD LVAGIGTG
Sbjct: 124 GFKGSLQKAEELLRETPDAFMPHQFENPANPKIHYETTGPEIWTDSGGKVDALVAGIGTG 183
Query: 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GT+TG+G+FLKE+NP IKVYGVEP ESA+L+GGQPG
Sbjct: 184 GTITGAGKFLKERNPKIKVYGVEPVESAVLSGGQPG 219
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130748|ref|XP_002328366.1| predicted protein [Populus trichocarpa] gi|222838081|gb|EEE76446.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 176/231 (76%), Positives = 196/231 (84%), Gaps = 10/231 (4%)
Query: 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDR------- 59
MEDN AIKKD T+LIGNTPMVYLNNV DGCVARIAAKLEMMEP SVKDR
Sbjct: 1 MEDNC---AIKKDVTELIGNTPMVYLNNVADGCVARIAAKLEMMEPLSSVKDRHATCSLK 57
Query: 60 IALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIV 119
I SMIKDAE+KGLITPGK+VLIE T GNTGI +AFIAA++GYK I++MP+ S+ERRIV
Sbjct: 58 IGHSMIKDAEDKGLITPGKTVLIEPTSGNTGIAVAFIAAVKGYKAILIMPATMSLERRIV 117
Query: 120 LRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKD 179
LRALGAEV L D A GF+G+L K +EIL+NTPNG+M RQFENPANP+IHYETTGPEIWKD
Sbjct: 118 LRALGAEVCLTDPAKGFQGVLDKSDEILNNTPNGYMLRQFENPANPQIHYETTGPEIWKD 177
Query: 180 SGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
S G VD VAGIGTGGTVTG+G+FLKEKNP IKVYGVEPTESA+LNGG+PG
Sbjct: 178 SRGKVDAFVAGIGTGGTVTGAGKFLKEKNPEIKVYGVEPTESAVLNGGKPG 228
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542384|ref|XP_002512255.1| cysteine synthase, putative [Ricinus communis] gi|223548216|gb|EEF49707.1| cysteine synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 171/225 (76%), Positives = 194/225 (86%), Gaps = 3/225 (1%)
Query: 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66
MED K AIKKD T+LIGNTPMVYLNN+++GC RIAAKLE MEPC SVKDRIA SMIK
Sbjct: 1 MED---KCAIKKDVTELIGNTPMVYLNNILEGCDVRIAAKLENMEPCYSVKDRIAYSMIK 57
Query: 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126
DAEEKGLITPGK+VL+E T GNTGI +A IAA +GYK+IIVMP+ S+ERRIVLRA GAE
Sbjct: 58 DAEEKGLITPGKTVLVEVTSGNTGIAMASIAAAKGYKIIIVMPAFKSLERRIVLRAFGAE 117
Query: 127 VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
++L D G++ IL+K EEI+ NTPNG+M QFENPANPKIHYETTGPEIWKDSGG VD
Sbjct: 118 LHLTDPNKGYDEILKKAEEIVKNTPNGYMLHQFENPANPKIHYETTGPEIWKDSGGKVDA 177
Query: 187 LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGR 231
LVAGIGTGGTVTG+G+FLKEKNP+IKVYGVEP ESA+LNGG+PG
Sbjct: 178 LVAGIGTGGTVTGAGKFLKEKNPDIKVYGVEPAESAVLNGGKPGH 222
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388508804|gb|AFK42468.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 163/220 (74%), Positives = 192/220 (87%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
AIKKD TQLIGNTP+VYLNN+ +GCVARIAAKLE ++ CCSVKDRI+LSMI+DAE KGLI
Sbjct: 6 AIKKDVTQLIGNTPLVYLNNITEGCVARIAAKLEYLQSCCSVKDRISLSMIEDAESKGLI 65
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
TPGK+VL+E T GNTGIGLA IAA+RGYKL++ MP+ S+ER+I+LRA GAEVYL D A
Sbjct: 66 TPGKTVLVEPTSGNTGIGLASIAAMRGYKLLVTMPATMSLERKIILRAFGAEVYLTDPAK 125
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194
G +G+ +K +E+L+ TPN + QFEN ANPKIHYETTGPEIWKDSGG VD LVAGIGTG
Sbjct: 126 GIDGVFQKADELLAKTPNSYKLNQFENSANPKIHYETTGPEIWKDSGGRVDALVAGIGTG 185
Query: 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLF 234
GTVTG+G+FLKEKNP+IKVYGVEPTESA+LNGG+PG+ L
Sbjct: 186 GTVTGTGKFLKEKNPDIKVYGVEPTESAVLNGGKPGKHLI 225
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487834|ref|XP_003633659.1| PREDICTED: cysteine synthase-like [Vitis vinifera] gi|298204916|emb|CBI34223.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 169/220 (76%), Positives = 188/220 (85%)
Query: 11 HHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEE 70
K AI KD T+LIGNTPMVYLNNVVDGCVA IAAKLEMMEPC SVKDRI SMI DAEE
Sbjct: 2 EEKCAIAKDVTELIGNTPMVYLNNVVDGCVAHIAAKLEMMEPCSSVKDRIGYSMINDAEE 61
Query: 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130
KGLITPGK+VLIE T GNTGIGLAFIAA +GYKLI+VMPS+ ++ER++V+ A GAE+YL
Sbjct: 62 KGLITPGKTVLIEPTSGNTGIGLAFIAAAKGYKLILVMPSVVTLERKMVVLAFGAELYLT 121
Query: 131 DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAG 190
D A G +G+ K EEIL NTPNG++ QFENPANPKIHYETTGPEIWK +GG VDILVAG
Sbjct: 122 DIAKGIQGVFDKAEEILQNTPNGYILNQFENPANPKIHYETTGPEIWKGTGGKVDILVAG 181
Query: 191 IGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
IGTGGTVTG+G FLKEKNP IKVYG+EP ESA+LNGG PG
Sbjct: 182 IGTGGTVTGAGHFLKEKNPEIKVYGIEPAESAVLNGGNPG 221
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487838|ref|XP_003633660.1| PREDICTED: cysteine synthase-like [Vitis vinifera] gi|298204917|emb|CBI34224.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/220 (76%), Positives = 188/220 (85%)
Query: 11 HHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEE 70
K AI KD T+LIGNTPMVYLNNVVDGCVA IAAKLEMMEPC SVKDRI SMI DAEE
Sbjct: 2 EEKCAIAKDVTELIGNTPMVYLNNVVDGCVAHIAAKLEMMEPCSSVKDRIGYSMINDAEE 61
Query: 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130
KGLITPGK+VLIE T GNTGIGLAFIAA +GYKLI+VMPS+ ++ER++V+ A GAE+YL
Sbjct: 62 KGLITPGKTVLIEPTSGNTGIGLAFIAAAKGYKLILVMPSVVTLERKMVVLAFGAELYLT 121
Query: 131 DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAG 190
D A G +G+ K +EIL NTPNG++ QFENPANPKIHYETTGPEIWK +GG VDILVAG
Sbjct: 122 DIAKGIQGVFDKADEILQNTPNGYILNQFENPANPKIHYETTGPEIWKGTGGKVDILVAG 181
Query: 191 IGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
IGTGGTVTG+G FLKEKNP IKVYG+EP ESA+LNGG PG
Sbjct: 182 IGTGGTVTGAGHFLKEKNPEIKVYGIEPAESAVLNGGNPG 221
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 251 | ||||||
| TAIR|locus:2114804 | 324 | CYSD1 "cysteine synthase D1" [ | 0.884 | 0.685 | 0.665 | 2.1e-77 | |
| TAIR|locus:2143814 | 323 | CYSD2 "cysteine synthase D2" [ | 0.880 | 0.684 | 0.691 | 5.5e-77 | |
| TAIR|locus:2043964 | 392 | OASB "O-acetylserine (thiol) l | 0.856 | 0.548 | 0.669 | 1e-75 | |
| TAIR|locus:2143754 | 323 | DES1 "L-cysteine desulfhydrase | 0.880 | 0.684 | 0.678 | 1.3e-75 | |
| TAIR|locus:2130419 | 322 | OASA1 "O-acetylserine (thiol) | 0.856 | 0.667 | 0.651 | 4e-74 | |
| TAIR|locus:2080417 | 433 | OASC "O-acetylserine (thiol) l | 0.856 | 0.496 | 0.641 | 1.6e-72 | |
| UNIPROTKB|Q1KLZ2 | 376 | CAS1 "L-3-cyanoalanine synthas | 0.856 | 0.571 | 0.553 | 1.1e-64 | |
| UNIPROTKB|Q1KLZ1 | 375 | CAS2 "L-3-cyanoalanine synthas | 0.856 | 0.573 | 0.553 | 2.9e-64 | |
| UNIPROTKB|Q43153 | 368 | CYSC "Bifunctional L-3-cyanoal | 0.856 | 0.584 | 0.558 | 3.7e-64 | |
| UNIPROTKB|Q76MX2 | 351 | PCAS-1 "Bifunctional L-3-cyano | 0.856 | 0.612 | 0.548 | 1.2e-63 |
| TAIR|locus:2114804 CYSD1 "cysteine synthase D1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 149/224 (66%), Positives = 178/224 (79%)
Query: 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66
ME++ + +IK DATQLIGNTPMVYLNN+VDGCVARIAAKLEMMEPC SVK+RIA MIK
Sbjct: 1 MEED--RCSIKDDATQLIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKERIAYGMIK 58
Query: 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126
DAE+KGLITPGKS LIE T GNTGIGLAFI A +GYK+++ MPS S+ER+I+L ALGAE
Sbjct: 59 DAEDKGLITPGKSTLIEATSGNTGIGLAFIGAAKGYKVVLTMPSSMSLERKIILLALGAE 118
Query: 127 VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
V+L D + G +GI+ K EEI S P+ M QF+NP+NP+ HY TTGPEIW+DS G+VDI
Sbjct: 119 VHLTDPSKGVQGIIDKAEEICSKNPDSIMLEQFKNPSNPQTHYRTTGPEIWRDSAGEVDI 178
Query: 187 LVAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
LVA RFLKEKN + KVYGVEPTESA+++GG+PG
Sbjct: 179 LVAGVGTGGTLSGSGRFLKEKNKDFKVYGVEPTESAVISGGKPG 222
|
|
| TAIR|locus:2143814 CYSD2 "cysteine synthase D2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 155/224 (69%), Positives = 178/224 (79%)
Query: 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66
MED + IK D T+LIGNTPMVYLNNVVDGCVARIAAKLEMMEPC SVKDRIA SMIK
Sbjct: 1 MED---RCLIKNDITELIGNTPMVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIAYSMIK 57
Query: 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126
DAE+KGLITPGKS LIE T GNTGIGLA + A RGYK+I+VMPS S+ERRI+LRALGAE
Sbjct: 58 DAEDKGLITPGKSTLIEPTAGNTGIGLACMGAARGYKVILVMPSTMSLERRIILRALGAE 117
Query: 127 VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
++L+DQ G +G+L K E ILS TP G++ +QFENPANP+IHY TTGPEIW+DS G VDI
Sbjct: 118 LHLSDQRIGLKGMLEKTEAILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDI 177
Query: 187 LVAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
LVA +FLKE+N +IKV VEP ES +L+GGQPG
Sbjct: 178 LVAGVGTGGTATGVGKFLKEQNKDIKVCVVEPVESPVLSGGQPG 221
|
|
| TAIR|locus:2043964 OASB "O-acetylserine (thiol) lyase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 144/215 (66%), Positives = 171/215 (79%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I +A QLIG TPMVYLNNVV GCVA +AAKLE+MEPCCSVKDRI SMI DAEEKGLIT
Sbjct: 75 IADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLIT 134
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKSVL+E+T GNTGIGLAFIAA +GYKLI+ MP+ S+ERR++LRA GAE+ L + A G
Sbjct: 135 PGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKG 194
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
G ++K EEIL TPN +M +QF+NPANPKIHYETTGPEIW+D+ G +DILVA
Sbjct: 195 MTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWEDTRGKIDILVAGIGTGG 254
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
RF+KE+ P +KV GVEPTESA+L+GG+PG
Sbjct: 255 TITGVGRFIKERKPELKVIGVEPTESAILSGGKPG 289
|
|
| TAIR|locus:2143754 DES1 "L-cysteine desulfhydrase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 152/224 (67%), Positives = 176/224 (78%)
Query: 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66
MED + IK D T+LIGNTPMVYLN +VDGCVARIAAKLEMMEPC S+KDRIA SMIK
Sbjct: 1 MED---RVLIKNDVTELIGNTPMVYLNKIVDGCVARIAAKLEMMEPCSSIKDRIAYSMIK 57
Query: 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126
DAE+KGLITPGKS LIE TGGNTGIGLA I A RGYK+I++MPS S+ERRI+LRALGAE
Sbjct: 58 DAEDKGLITPGKSTLIEATGGNTGIGLASIGASRGYKVILLMPSTMSLERRIILRALGAE 117
Query: 127 VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
V+L D + G +G L K +EILS TP G++ QF NP NP+IHY TTGPEIW+DS G VDI
Sbjct: 118 VHLTDISIGIKGQLEKAKEILSKTPGGYIPHQFINPENPEIHYRTTGPEIWRDSAGKVDI 177
Query: 187 LVAXXXXXXXXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
LVA +FLKEKN +IKV VEP+ESA+L+GG+PG
Sbjct: 178 LVAGVGTGGTVTGTGKFLKEKNKDIKVCVVEPSESAVLSGGKPG 221
|
|
| TAIR|locus:2130419 OASA1 "O-acetylserine (thiol) lyase (OAS-TL) isoform A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 140/215 (65%), Positives = 167/215 (77%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI SMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+SVLIE T GNTG+GLAF AA +GYKLII MP+ S ERRI+L A G E+ L D A G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
+G + K EEIL+ TPNG+M +QFENPANPKIHYETTGPEIWK +GG +D V+
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
++LKE+N N+K+YGVEP ESA+L+GG+PG
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
|
|
| TAIR|locus:2080417 OASC "O-acetylserine (thiol) lyase isoform C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 138/215 (64%), Positives = 166/215 (77%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I + +QLIG TPMVYLN++ GCVA IAAKLE+MEPCCSVKDRI SM+ DAE+KG I+
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKSVL+E T GNTGIGLAFIAA RGY+LI+ MP+ SMERR++L+A GAE+ L D A G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
G ++K EEIL NTP+ +M +QF+NPANPKIHYETTGPEIW D+ G VDI VA
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
RF+KEKNP +V GVEPTES +L+GG+PG
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327
|
|
| UNIPROTKB|Q1KLZ2 CAS1 "L-3-cyanoalanine synthase 1, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 119/215 (55%), Positives = 156/215 (72%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
IK +QLIG TP+VYLN V +GC A IA K EM +P S+KDR ALSMI DAEEKGLIT
Sbjct: 55 IKTQVSQLIGRTPIVYLNKVTEGCGAYIAVKQEMFQPTASIKDRPALSMINDAEEKGLIT 114
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+++LIE T GN GI +AF+AA+RGYK+++ MPS S+ERR+ +R GA++ L D G
Sbjct: 115 PGETILIEPTSGNMGISMAFMAAMRGYKMVLTMPSYTSLERRVCMRCFGADLILTDPTKG 174
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
G ++K ++L +TPN +M +QF NPAN K+H+ETTGPEIW+D+ G VDI V
Sbjct: 175 MGGTVKKAYDLLESTPNAYMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGSGG 234
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
++LK KNPN+++YGVEP ES +LNGG+PG
Sbjct: 235 TVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPG 269
|
|
| UNIPROTKB|Q1KLZ1 CAS2 "L-3-cyanoalanine synthase 2, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 119/215 (55%), Positives = 155/215 (72%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
IK +QLIG TP+VYLN V +GC A IA K EM +P S+KDR ALSMI DAEEKGLIT
Sbjct: 56 IKTQVSQLIGRTPIVYLNKVTEGCGAFIAVKQEMFQPTASIKDRPALSMINDAEEKGLIT 115
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG++ LIE T GN GI +AF+AA++GYK+++ MPS S+ERR+ +R GA++ L D G
Sbjct: 116 PGETTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVCMRCFGADLILTDPTKG 175
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
G ++K ++L +TPN FM +QF NPAN K+H+ETTGPEIW+D+ G VDI V
Sbjct: 176 MGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGSGG 235
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
++LK KNPN+++YGVEP ES +LNGG+PG
Sbjct: 236 TVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPG 270
|
|
| UNIPROTKB|Q43153 CYSC "Bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 120/215 (55%), Positives = 161/215 (74%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
IK + +QLIG TP+VYL+ + +G A IA K EMM+P SVKDR AL+MI+DAE+KGLI+
Sbjct: 49 IKTNVSQLIGRTPLVYLSKISEGSGAYIAVKQEMMQPTASVKDRPALAMIEDAEKKGLIS 108
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGK+VLIE T GN GI +AF+AA++GYK+++ MPS SMERR+V+RA GA++ L D G
Sbjct: 109 PGKTVLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSMERRVVMRAFGADLILTDPDKG 168
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
G ++K ++L +TP+GFM +QF NPAN ++H+ETTGPEIW+D+ G VDI V
Sbjct: 169 MGGTVKKANQLLDSTPDGFMLQQFNNPANTQVHFETTGPEIWEDTQGKVDIFVMGIGSGG 228
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
R+LK +NPN+K+YGVEP ES +LNGG+PG
Sbjct: 229 TVSGVGRYLKSQNPNVKIYGVEPAESNILNGGKPG 263
|
|
| UNIPROTKB|Q76MX2 PCAS-1 "Bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 118/215 (54%), Positives = 155/215 (72%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
IK +QLIG TP+VYLN V +GC A IA K EMM+P S+KDR A +MI DAE+KGLIT
Sbjct: 32 IKTQVSQLIGKTPLVYLNKVSEGCGAYIAVKQEMMQPTSSIKDRPAFAMINDAEKKGLIT 91
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGK+ LIE T GN GI +AF+AA++GYK+I+ MPS S+ERR+ +RA GA++ D G
Sbjct: 92 PGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMRAFGADLVTTDPTKG 151
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAXXXXXX 195
G ++K ++L +TPN +M +QF NPAN + H+ETTGPEIW+D+ G+VDI V
Sbjct: 152 MGGTIKKAYDLLESTPNAYMLQQFSNPANTQAHFETTGPEIWEDTQGNVDIFVMGIGSGG 211
Query: 196 XXXXXXRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
++LK KNPN+K+YG+EPTES +LNGG PG
Sbjct: 212 TVSGVGQYLKSKNPNVKIYGIEPTESNVLNGGNPG 246
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P0A535 | CYSK_MYCBO | 2, ., 5, ., 1, ., 4, 7 | 0.5046 | 0.8565 | 0.6935 | yes | no |
| P0A534 | CYSK_MYCTU | 2, ., 5, ., 1, ., 4, 7 | 0.5046 | 0.8565 | 0.6935 | yes | no |
| P37887 | CYSK_BACSU | 2, ., 5, ., 1, ., 4, 7 | 0.5355 | 0.8286 | 0.6753 | yes | no |
| O32978 | CYSK_MYCLE | 2, ., 5, ., 1, ., 4, 7 | 0.5092 | 0.8565 | 0.6935 | yes | no |
| Q43317 | CYSK_CITLA | 2, ., 5, ., 1, ., 5, 2 | 0.7201 | 0.8685 | 0.6707 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00700110 | hypothetical protein (331 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_fgenesh4_pm.C_LG_XV0472 | serine O-acetyltransferase (EC-2.3.1.30) (293 aa) | • | • | • | • | 0.941 | |||||
| estExt_fgenesh4_pg.C_410108 | serine O-acetyltransferase (EC-2.3.1.30) (294 aa) | • | • | • | • | 0.940 | |||||
| estExt_fgenesh4_pm.C_LG_I1139 | serine O-acetyltransferase (EC-2.3.1.30) (334 aa) | • | • | • | 0.937 | ||||||
| estExt_fgenesh4_pg.C_LG_V0392 | hypothetical protein (395 aa) | • | • | • | 0.924 | ||||||
| gw1.IX.3567.1 | sulfite reductase (EC-1.8.7.1) (576 aa) | • | • | 0.914 | |||||||
| gw1.I.1513.1 | sulfite reductase (EC-1.8.7.1) (634 aa) | • | • | 0.913 | |||||||
| estExt_Genewise1_v1.C_LG_I4741 | phosphateglycerate kinase (EC-2.5.1.47) (424 aa) | • | • | • | • | 0.908 | |||||
| gw1.XIV.1323.1 | cysteine synthase/L-3-cyanoalanine synthase (EC-4.4.1.9) (342 aa) | • | • | • | 0.902 | ||||||
| grail3.0039007102 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (375 aa) | • | • | • | 0.902 | ||||||
| gw1.142.135.1 | hypothetical protein (336 aa) | • | • | • | 0.901 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 251 | |||
| PLN00011 | 323 | PLN00011, PLN00011, cysteine synthase | 1e-128 | |
| PLN02565 | 322 | PLN02565, PLN02565, cysteine synthase | 1e-127 | |
| PLN02556 | 368 | PLN02556, PLN02556, cysteine synthase/L-3-cyanoala | 1e-111 | |
| TIGR01136 | 299 | TIGR01136, cysKM, cysteine synthase | 1e-110 | |
| PLN03013 | 429 | PLN03013, PLN03013, cysteine synthase | 1e-109 | |
| cd01561 | 291 | cd01561, CBS_like, CBS_like: This subgroup include | 1e-106 | |
| TIGR01139 | 298 | TIGR01139, cysK, cysteine synthase A | 1e-104 | |
| COG0031 | 300 | COG0031, CysK, Cysteine synthase [Amino acid trans | 1e-101 | |
| PRK10717 | 330 | PRK10717, PRK10717, cysteine synthase A; Provision | 2e-81 | |
| PRK11761 | 296 | PRK11761, cysM, cysteine synthase B; Provisional | 2e-77 | |
| TIGR01137 | 454 | TIGR01137, cysta_beta, cystathionine beta-synthase | 4e-70 | |
| TIGR01138 | 290 | TIGR01138, cysM, cysteine synthase B | 1e-66 | |
| cd00640 | 244 | cd00640, Trp-synth-beta_II, Tryptophan synthase be | 1e-64 | |
| TIGR03945 | 304 | TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio | 5e-60 | |
| pfam00291 | 295 | pfam00291, PALP, Pyridoxal-phosphate dependent enz | 2e-52 | |
| PLN02356 | 423 | PLN02356, PLN02356, phosphateglycerate kinase | 2e-44 | |
| cd01562 | 304 | cd01562, Thr-dehyd, Threonine dehydratase: The fir | 1e-18 | |
| COG1171 | 347 | COG1171, IlvA, Threonine dehydratase [Amino acid t | 3e-18 | |
| TIGR01127 | 380 | TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m | 5e-14 | |
| PRK08638 | 333 | PRK08638, PRK08638, threonine dehydratase; Validat | 2e-11 | |
| TIGR01124 | 499 | TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b | 3e-11 | |
| PRK08198 | 404 | PRK08198, PRK08198, threonine dehydratase; Provisi | 7e-11 | |
| PRK12483 | 521 | PRK12483, PRK12483, threonine dehydratase; Reviewe | 9e-10 | |
| PRK06815 | 317 | PRK06815, PRK06815, hypothetical protein; Provisio | 2e-08 | |
| PRK09224 | 504 | PRK09224, PRK09224, threonine dehydratase; Reviewe | 4e-08 | |
| PLN02550 | 591 | PLN02550, PLN02550, threonine dehydratase | 5e-08 | |
| PRK06382 | 406 | PRK06382, PRK06382, threonine dehydratase; Provisi | 6e-08 | |
| cd01563 | 324 | cd01563, Thr-synth_1, Threonine synthase is a pyri | 2e-07 | |
| PRK06721 | 352 | PRK06721, PRK06721, threonine synthase; Reviewed | 2e-07 | |
| PRK08246 | 310 | PRK08246, PRK08246, threonine dehydratase; Provisi | 2e-07 | |
| PRK06352 | 351 | PRK06352, PRK06352, threonine synthase; Validated | 8e-07 | |
| PRK08526 | 403 | PRK08526, PRK08526, threonine dehydratase; Provisi | 1e-06 | |
| TIGR02079 | 409 | TIGR02079, THD1, threonine dehydratase | 2e-06 | |
| PRK07334 | 403 | PRK07334, PRK07334, threonine dehydratase; Provisi | 2e-06 | |
| PRK06381 | 319 | PRK06381, PRK06381, threonine synthase; Validated | 4e-06 | |
| PRK06608 | 338 | PRK06608, PRK06608, threonine dehydratase; Provisi | 7e-06 | |
| TIGR02991 | 317 | TIGR02991, ectoine_eutB, ectoine utilization prote | 3e-05 | |
| PRK06110 | 322 | PRK06110, PRK06110, hypothetical protein; Provisio | 4e-05 | |
| PRK07476 | 322 | PRK07476, eutB, threonine dehydratase; Provisional | 6e-05 | |
| PRK08639 | 420 | PRK08639, PRK08639, threonine dehydratase; Validat | 2e-04 | |
| PRK08329 | 347 | PRK08329, PRK08329, threonine synthase; Validated | 4e-04 | |
| TIGR03528 | 396 | TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammoni | 5e-04 | |
| COG0604 | 326 | COG0604, Qor, NADPH:quinone reductase and related | 8e-04 | |
| TIGR01747 | 376 | TIGR01747, diampropi_NH3ly, diaminopropionate ammo | 0.001 | |
| PRK08197 | 394 | PRK08197, PRK08197, threonine synthase; Validated | 0.001 | |
| PRK07048 | 321 | PRK07048, PRK07048, serine/threonine dehydratase; | 0.001 | |
| COG0498 | 411 | COG0498, ThrC, Threonine synthase [Amino acid tran | 0.002 | |
| PRK08206 | 399 | PRK08206, PRK08206, diaminopropionate ammonia-lyas | 0.002 | |
| cd06448 | 316 | cd06448, L-Ser-dehyd, Serine dehydratase is a pyri | 0.003 | |
| PRK06450 | 338 | PRK06450, PRK06450, threonine synthase; Validated | 0.003 |
| >gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase | Back alignment and domain information |
|---|
Score = 365 bits (939), Expect = e-128
Identities = 168/224 (75%), Positives = 190/224 (84%), Gaps = 3/224 (1%)
Query: 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66
MED + IK D T+LIGNTPMVYLNN+VDGCVARIAAKLEMMEPC SVKDRIA SMIK
Sbjct: 1 MED---RCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIK 57
Query: 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126
DAE+KGLITPGKS LIE T GNTGIGLA I A RGYK+I+VMPS S+ERRI+LRALGAE
Sbjct: 58 DAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAE 117
Query: 127 VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
V+L DQ+ G +G+L K EEILS TP G++ +QFENPANP+IHY TTGPEIW+DS G VDI
Sbjct: 118 VHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDI 177
Query: 187 LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
LVAG+GTGGT TG G+FLKEKN +IKV VEP ESA+L+GGQPG
Sbjct: 178 LVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPG 221
|
Length = 323 |
| >gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase | Back alignment and domain information |
|---|
Score = 363 bits (934), Expect = e-127
Identities = 157/218 (72%), Positives = 186/218 (85%)
Query: 13 KRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKG 72
K +I KD T+LIG TP+VYLNNVVDGCVARIAAKLEMMEPC SVKDRI SMI DAEEKG
Sbjct: 2 KSSIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKG 61
Query: 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132
LI PG+SVLIE T GNTGIGLAF+AA +GYKLII MP+ S+ERRI+L A GAE+ L D
Sbjct: 62 LIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDP 121
Query: 133 AGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIG 192
A G +G ++K EEIL+ TPN ++ +QFENPANPKIHYETTGPEIWK +GG VD V+GIG
Sbjct: 122 AKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIG 181
Query: 193 TGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
TGGT+TG+G++LKE+NP+IK+YGVEP ESA+L+GG+PG
Sbjct: 182 TGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPG 219
|
Length = 322 |
| >gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-111
Identities = 133/215 (61%), Positives = 170/215 (79%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
IK DA+QLIG TP+VYLN V +GC A IAAK EM +P S+KDR AL+MI+DAE+K LIT
Sbjct: 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLIT 108
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGK+ LIE T GN GI LAF+AA++GYK+I+ MPS S+ERR+ +RA GAE+ L D G
Sbjct: 109 PGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKG 168
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
G ++K E+L +TP+ FM +QF NPAN ++H+ETTGPEIW+D+ G VDI V GIG+GG
Sbjct: 169 MGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGG 228
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
TV+G G++LK KNPN+K+YGVEP ES +LNGG+PG
Sbjct: 229 TVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPG 263
|
Length = 368 |
| >gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = e-110
Identities = 123/210 (58%), Positives = 155/210 (73%), Gaps = 1/210 (0%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80
+LIGNTP+V LN + GC AR+ AKLE P SVKDRIALSMI+DAE++GL+ PG
Sbjct: 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD-T 60
Query: 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGIL 140
+IE T GNTGI LA +AA +GYKLI+ MP S+ERR +LRA GAE+ L G +G +
Sbjct: 61 IIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAI 120
Query: 141 RKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGS 200
K EE+ + T M QFENPANP+ HY+TTGPEIW+D+ G +D VAG+GTGGT+TG
Sbjct: 121 DKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGV 180
Query: 201 GRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GR+LKE+NPNIK+ VEP ES +L+GG+PG
Sbjct: 181 GRYLKEQNPNIKIVAVEPAESPVLSGGEPG 210
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299 |
| >gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase | Back alignment and domain information |
|---|
Score = 320 bits (820), Expect = e-109
Identities = 148/215 (68%), Positives = 177/215 (82%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I + +QLIG TPMVYLN++ GCVA IAAKLE+MEPCCSVKDRI SM+ DAE+KG I+
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKSVL+E T GNTGIGLAFIAA RGY+LI+ MP+ SMERR++L+A GAE+ L D A G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
G ++K EEIL NTP+ +M +QF+NPANPKIHYETTGPEIW D+ G VDI VAGIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG GRF+KEKNP +V GVEPTES +L+GG+PG
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327
|
Length = 429 |
| >gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = e-106
Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 3/208 (1%)
Query: 25 GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIET 84
GNTP+V LN + G A I AKLE P SVKDRIAL MI+DAE++GL+ PG + +IE
Sbjct: 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEP 59
Query: 85 TGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL--ADQAGGFEGILRK 142
T GNTGIGLA +AA +GY+ IIVMP S E+R +LRALGAEV L +A G +G + K
Sbjct: 60 TSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAK 119
Query: 143 GEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGR 202
E+ + TPN F QFENPANP+ HYETT PEIW+ G VD VAG+GTGGT+TG R
Sbjct: 120 ARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVAR 179
Query: 203 FLKEKNPNIKVYGVEPTESAMLNGGQPG 230
+LKEKNPN+++ GV+P S + +GG PG
Sbjct: 180 YLKEKNPNVRIVGVDPVGSVLFSGGPPG 207
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291 |
| >gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = e-104
Identities = 123/211 (58%), Positives = 158/211 (74%), Gaps = 3/211 (1%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80
++LIGNTP+V LN + +GC A + KLE P SVKDRIAL+MI DAE++GL+ PGK
Sbjct: 2 SELIGNTPLVRLNRI-EGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGK-T 59
Query: 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGIL 140
++E T GNTGI LA +AA RGYKLI+ MP S+ERR +L+A GAE+ L A G +G +
Sbjct: 60 IVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAI 119
Query: 141 RKGEEILSNTPNG-FMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTG 199
K EEI ++TPN FM +QFENPANP+IH +TTGPEIW+D+ G +D VAG+GTGGT+TG
Sbjct: 120 AKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITG 179
Query: 200 SGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
G LKE+ PNIK+ VEP ES +L+GG+PG
Sbjct: 180 VGEVLKEQKPNIKIVAVEPAESPVLSGGKPG 210
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298 |
| >gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 296 bits (761), Expect = e-101
Identities = 115/220 (52%), Positives = 149/220 (67%), Gaps = 3/220 (1%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I + LIGNTP+V LN + G I AKLE P SVKDRIAL MI+DAE++GL+
Sbjct: 1 IYESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLK 60
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG ++E T GNTGI LA +AA +GY+LIIVMP S ERR +LRALGAEV L A G
Sbjct: 61 PGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG 119
Query: 136 F-EGILRKGEEILSNTPN-GFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGT 193
+G + + +E+ + P QFENPANP+ HYETTGPEIW+ + G VD VAG+GT
Sbjct: 120 NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGT 179
Query: 194 GGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLL 233
GGT+TG R+LKE+NPN+++ V+P S +L+GG+ +
Sbjct: 180 GGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKI 219
|
Length = 300 |
| >gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 2e-81
Identities = 105/219 (47%), Positives = 145/219 (66%), Gaps = 12/219 (5%)
Query: 16 IKKDATQLIGNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
I +D + IGNTP++ LN + GC I K E + P SVKDR AL++I DAE++GL
Sbjct: 3 IFEDVSDTIGNTPLIRLNRASEATGC--EILGKAEFLNPGGSVKDRAALNIIWDAEKRGL 60
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL---- 129
+ PG ++ +E T GNTGIGLA +AA RGYK +IVMP S E++ +LRALGAE+ L
Sbjct: 61 LKPGGTI-VEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAA 119
Query: 130 --ADQAGGFEGILRKGEEILSNTPNGFMF-RQFENPANPKIHYETTGPEIWKDSGGDVDI 186
A+ +G R EE++++ PNG ++ QF+NPAN + HYETTGPEIW+ + G VD
Sbjct: 120 PYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDG 179
Query: 187 LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225
V +GTGGT+ G R+LKE NP +K+ +PT SA+ +
Sbjct: 180 FVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYS 218
|
Length = 330 |
| >gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (603), Expect = 2e-77
Identities = 94/201 (46%), Positives = 123/201 (61%), Gaps = 2/201 (0%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
IGNTP+V L + I AKLE P SVKDR ALSMI AE++G I PG L
Sbjct: 8 DTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTL 66
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141
IE T GNTGI LA IAA++GY++ ++MP S ERR +RA GAE+ L + G EG R
Sbjct: 67 IEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGA-R 125
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSG 201
+ G + QF NP NP HYETTGPEIW+ + G + V+ +GT GT+ G
Sbjct: 126 DLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVS 185
Query: 202 RFLKEKNPNIKVYGVEPTESA 222
R+LKE+NP +++ G++P E +
Sbjct: 186 RYLKEQNPAVQIVGLQPEEGS 206
|
Length = 296 |
| >gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 4e-70
Identities = 99/219 (45%), Positives = 134/219 (61%), Gaps = 11/219 (5%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I+ + LIGNTP+V LN V G + AK E P SVKDRIAL MI+DAE G +
Sbjct: 1 IRDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLK 60
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG +IE T GNTGIGLA +AA++GYK IIV+P S E+ VL+ALGAE+ A
Sbjct: 61 PG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAA 119
Query: 136 FE------GILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVA 189
F+ G+ ++ ++ P + Q+ NP+NP HY+ TGPEI + G +D+ VA
Sbjct: 120 FDSPESHIGVAKR---LVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVA 176
Query: 190 GIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQ 228
G GTGGT+TG R+LKE NP ++ G +P E ++L +
Sbjct: 177 GAGTGGTITGIARYLKESNPKCRIVGADP-EGSILAQPE 214
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454 |
| >gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 1e-66
Identities = 94/205 (45%), Positives = 129/205 (62%), Gaps = 2/205 (0%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
Q +GNTP+V L + + + KLE P SVKDR ALSMI +AE++G I PG VL
Sbjct: 4 QTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD-VL 62
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILR 141
IE T GNTGI LA IAAL+GY++ ++MP S ER+ +RA GAE+ L + G EG
Sbjct: 63 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARD 122
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSG 201
E+ + G + QF NP NP HY +TGPEIW+ +GG + V+ +GT GT+ G
Sbjct: 123 LALELANRGE-GKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVS 181
Query: 202 RFLKEKNPNIKVYGVEPTESAMLNG 226
RFLKE+NP +++ G++P E + + G
Sbjct: 182 RFLKEQNPPVQIVGLQPEEGSSIPG 206
|
CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290 |
| >gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 1e-64
Identities = 87/194 (44%), Positives = 109/194 (56%), Gaps = 6/194 (3%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86
TP+V L + A I KLE + P S KDR AL++I AEE+G + K V+IE+TG
Sbjct: 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL--PKGVIIESTG 58
Query: 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEI 146
GNTGI LA AA G K IVMP AS E+ +RALGAEV L G F+ + +E+
Sbjct: 59 GNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVP--GDFDDAIALAKEL 116
Query: 147 LSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG-DVDILVAGIGTGGTVTGSGRFLK 205
P + QF+NPAN T G EI + GG D +V +G GG + G R LK
Sbjct: 117 AEEDPGAYYVNQFDNPANIAGQG-TIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALK 175
Query: 206 EKNPNIKVYGVEPT 219
E PN+KV GVEP
Sbjct: 176 ELLPNVKVIGVEPE 189
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244 |
| >gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 5e-60
Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 9/215 (4%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81
LIGNTP+V L + R+ AKLE P S+KDR AL +++ A ++G ITPG + +
Sbjct: 3 SLIGNTPLVKLERLFPDAPFRLFAKLEGFNPGGSIKDRPALYILEAAIKRGRITPG-TTI 61
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVM-PSIASMERRIVLRALGAEVYLADQ---AGGFE 137
IE++ GN GI LA I A +G + I V+ P+I+ ++ LRA GAEV + GG+
Sbjct: 62 IESSSGNLGIALAMICAYKGLRFICVVDPNISPQNLKL-LRAYGAEVEKVTEPDETGGYL 120
Query: 138 GI-LRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGT 196
G + + E+L++ P+ + Q+ NP NP+ HY TG EI + +D L G+ T GT
Sbjct: 121 GTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGREI-ARAFPPLDYLFVGVSTTGT 179
Query: 197 VTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGR 231
+ G R L+E+ PN KV V+ S + GG PGR
Sbjct: 180 LMGCSRRLRERGPNTKVIAVDAVGSVIF-GGPPGR 213
|
Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304 |
| >gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 2e-52
Identities = 77/208 (37%), Positives = 108/208 (51%), Gaps = 13/208 (6%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80
+ IG TP+V L + AR+ KLE + P S KDR A ++ A E+G +
Sbjct: 2 SLGIGPTPLVRLPS--PLLGARVYLKLESLNPTGSFKDRGAAYLLLRALERG------AT 53
Query: 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG-- 138
++E + GNTG LA AA G K+ IV+P AS + +++RALGAEV L G ++
Sbjct: 54 VVEASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLLLMRALGAEVILVVSEGDYDDAL 113
Query: 139 -ILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSG-GDVDILVAGIGTGGT 196
+ + E+L+ Q+ NP N Y+T G EI + G GD D +V +G GG
Sbjct: 114 ELAEEAAELLAAYDGPIPLGQYNNP-NVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGGL 172
Query: 197 VTGSGRFLKEKNPNIKVYGVEPTESAML 224
G R LKE P I+V GVEP + L
Sbjct: 173 AAGIARGLKELGPGIRVIGVEPEGAPAL 200
|
Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295 |
| >gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 2e-44
Identities = 89/243 (36%), Positives = 126/243 (51%), Gaps = 42/243 (17%)
Query: 24 IGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIE 83
IGNTP++ +N++ + I K E + P SVKDR+A+ +I++A E G + PG V+ E
Sbjct: 51 IGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTE 109
Query: 84 TTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV-------------YL- 129
+ G+T I LA +A G K +V+P ++E+ +L ALGA V Y+
Sbjct: 110 GSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVN 169
Query: 130 -----ADQAGGFEGILRKGEEI----------------------LSNTPNGFMFRQFENP 162
A +A RKG E S+ GF QFEN
Sbjct: 170 IARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENL 229
Query: 163 ANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
AN + HYE TGPEIW+ + G++D VA GTGGT+ G RFL+EKNPNIK + ++P S
Sbjct: 230 ANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSG 289
Query: 223 MLN 225
+ N
Sbjct: 290 LFN 292
|
Length = 423 |
| >gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 1e-18
Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 43/213 (20%)
Query: 27 TPMVY---LNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMI----KDAEEKGLITPGKS 79
TP++ L+ ++ A + K E ++ S K R A + + ++ KG++
Sbjct: 18 TPLLTSPTLSELLG---AEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVA---- 70
Query: 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGI 139
+ GN G+A+ A L G IVMP A + RA GAEV L F+
Sbjct: 71 ----ASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYG--EDFDEA 124
Query: 140 LRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDILVA 189
K E+ G F IH ++ T G EI + D+D +
Sbjct: 125 EAKARELAEEE--GLTF----------IHPFDDPDVIAGQGTIGLEILEQV-PDLDAVFV 171
Query: 190 GIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
+G GG + G +K +PN KV GVEP +
Sbjct: 172 PVGGGGLIAGIATAVKALSPNTKVIGVEPEGAP 204
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304 |
| >gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-18
Identities = 56/201 (27%), Positives = 81/201 (40%), Gaps = 17/201 (8%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86
TP+ ++ + A I K E ++P S K R A + + E+ G +I +
Sbjct: 26 TPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAG---VIAASA 82
Query: 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEI 146
GN G+A+ A G K IVMP + R GAEV L F+ EE+
Sbjct: 83 GNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDN--FDDAYAAAEEL 140
Query: 147 LSNTPNGFMFRQ-FENPANPKIH----YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSG 201
G F F++P T EI + D + +G GG ++G
Sbjct: 141 AEE--EGLTFVPPFDDP-----DVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIA 193
Query: 202 RFLKEKNPNIKVYGVEPTESA 222
LK +P IKV GVEP +
Sbjct: 194 TALKALSPEIKVIGVEPEGAP 214
|
Length = 347 |
| >gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 5e-14
Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 25/213 (11%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86
TP++Y + D + + KLE ++ S K R AL+ I + E + ++ +
Sbjct: 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQ----RQRGVVAASA 56
Query: 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL--ADQAGGFEGILRKGE 144
GN G+A+ A G K +IVMP A + ++ GAEV L D + E
Sbjct: 57 GNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGDDYDEAYAFATSLAE 116
Query: 145 EILSNTPNGFMF-RQFENP---ANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGS 200
E G +F F++ A T G EI +D DVD ++ +G GG ++G
Sbjct: 117 E------EGRVFVHPFDDEFVMAGQG----TIGLEIMED-IPDVDTVIVPVGGGGLISGV 165
Query: 201 GRFLKEKNPNIKVYGVE----PTESAMLNGGQP 229
K+ NPN+KV GVE P+ L G+
Sbjct: 166 ASAAKQINPNVKVIGVEAEGAPSMYESLREGKI 198
|
A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380 |
| >gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-11
Identities = 66/198 (33%), Positives = 87/198 (43%), Gaps = 23/198 (11%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIA---LSMIKDAE-EKGLITPGKSVLI 82
TP+ N + + C I KLE M+ S K R A LS + DAE KG++
Sbjct: 28 TPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVA------- 80
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRK 142
+ GN G+A AL G +VMP A + GAEV L F + K
Sbjct: 81 -CSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDN--FNDTIAK 137
Query: 143 GEEILSNTPNGFMFRQFENPAN-PKI--HYETTGPEIWKDSGGDVDILVAGIGTGGTVTG 199
EEI+ R F P + PK+ T G EI +D DVD ++ IG GG + G
Sbjct: 138 VEEIVEEEG-----RTFIPPYDDPKVIAGQGTIGLEILEDLW-DVDTVIVPIGGGGLIAG 191
Query: 200 SGRFLKEKNPNIKVYGVE 217
LK NP I + GV+
Sbjct: 192 IAVALKSINPTIHIIGVQ 209
|
Length = 333 |
| >gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-11
Identities = 60/207 (28%), Positives = 85/207 (41%), Gaps = 36/207 (17%)
Query: 42 RIAAKLEMMEPCCSVKDRIALSMI----KDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97
RI K E ++P S K R A + + + + +G+I + GN G+AF A
Sbjct: 33 RILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIA--------ASAGNHAQGVAFSA 84
Query: 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGGFEGILRKGEEILSNTPNG 153
A G K +IVMP + +R G EV L D A L + G
Sbjct: 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQ--------EKG 136
Query: 154 FMF-RQFENP---ANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP 209
F F++P A T EI + +D + +G GG G +K+ P
Sbjct: 137 LTFIHPFDDPLVIAGQG----TLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMP 192
Query: 210 NIKVYGVEPTES----AMLNGGQPGRL 232
IKV GVEPT+S L+ G+P L
Sbjct: 193 EIKVIGVEPTDSDCMKQALDAGEPVDL 219
|
This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499 |
| >gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 7e-11
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 42/178 (23%)
Query: 59 RIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRI 118
+IA S+ ++ +G++ + GN G+A+ A+L G K IVMP A + +
Sbjct: 60 KIA-SLSEEERARGVVA--------ASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVK 110
Query: 119 VLRALGAEVYLA----DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH-YE--- 170
R+ GAEV L D+A L K +E+ T G F +H ++
Sbjct: 111 ATRSYGAEVVLHGDVYDEA------LAKAQELAEET--GATF----------VHPFDDPD 152
Query: 171 ------TTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
T G EI +D DVD +V IG GG ++G +K P ++V GV+ +
Sbjct: 153 VIAGQGTIGLEILED-LPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAP 209
|
Length = 404 |
| >gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-10
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 42 RIAAKLEMMEPCCSVKDRIALSMIK----DAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97
++ K E ++P S K R A + + + +G+IT + GN G+A A
Sbjct: 53 QVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVIT--------ASAGNHAQGVALAA 104
Query: 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMF- 156
A G K +IVMP + +RA G EV L ++ F L ++ G F
Sbjct: 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGES--FPDALAHALKLAEE--EGLTFV 160
Query: 157 RQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGV 216
F++P + T EI + G +D + +G GG + G ++K P IKV GV
Sbjct: 161 PPFDDP-DVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGV 219
Query: 217 EPTESAML 224
EP +S L
Sbjct: 220 EPDDSNCL 227
|
Length = 521 |
| >gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 41 ARIAAKLEMMEPCCSVKDRIALSMIK----DAEEKGLITPGKSVLIETTGGNTGIGLAFI 96
+ K E ++ S K R A + ++ ++G+IT + GN G G+A
Sbjct: 35 CEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVIT--------ASSGNHGQGVALA 86
Query: 97 AALRGYKLIIVMPSIASMERRIVLRALGAEV-YLADQAGGFEGILRKGEEILSNTPNGFM 155
A L G + + P AS + +RALGAEV A E R+ E
Sbjct: 87 AKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKV----- 141
Query: 156 FRQFENPAN-PKI--HYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIK 212
+ +P N P++ T G E+ + + VA +G GG ++G +LK +P +
Sbjct: 142 ---YISPYNDPQVIAGQGTIGMELVEQQPDLDAVFVA-VGGGGLISGIATYLKTLSPKTE 197
Query: 213 VYGVEPTESAML 224
+ G P S L
Sbjct: 198 IIGCWPANSPSL 209
|
Length = 317 |
| >gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 4e-08
Identities = 58/204 (28%), Positives = 86/204 (42%), Gaps = 50/204 (24%)
Query: 42 RIAAKLEMMEPCCSVKDRIALSMI----KDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97
++ K E ++P S K R A + + ++ +G+IT + GN G+A A
Sbjct: 36 QVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVIT--------ASAGNHAQGVALSA 87
Query: 98 ALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLA----DQAGGFEGILRKGEEI-LSNTP 151
A G K +IVMP ++ V RA G EV L D+A I L+
Sbjct: 88 ARLGIKAVIVMPVTTPDIKVDAV-RAFGGEVVLHGDSFDEA--------YAHAIELAEE- 137
Query: 152 NGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVD-ILVAGIGTGGTVTGS 200
G F IH ++ T EI + +D + V +G GG + G
Sbjct: 138 EGLTF----------IHPFDDPDVIAGQGTIAMEILQQHPHPLDAVFVP-VGGGGLIAGV 186
Query: 201 GRFLKEKNPNIKVYGVEPTESAML 224
++K+ P IKV GVEP +SA L
Sbjct: 187 AAYIKQLRPEIKVIGVEPEDSACL 210
|
Length = 504 |
| >gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 5e-08
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 25/191 (13%)
Query: 42 RIAAKLEMMEPCCSVKDRIALSMI----KDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97
++ K E ++P S K R A +M+ K+ +KG+I ++ GN G+A A
Sbjct: 125 KVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVIC--------SSAGNHAQGVALSA 176
Query: 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGGFEGILRKGEEILSNTPNG 153
G +I MP + + LGA V L D+A + R EE + P
Sbjct: 177 QRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQ-RALEEGRTFIP-- 233
Query: 154 FMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKV 213
F++P + T G EI + G + + +G GG + G ++K P +K+
Sbjct: 234 ----PFDHP-DVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKI 288
Query: 214 YGVEPTES-AM 223
GVEP+++ AM
Sbjct: 289 IGVEPSDANAM 299
|
Length = 591 |
| >gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 6e-08
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 24 IGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAL---SMIKDAEEK-GLITPGKS 79
+ TP+++ D I KLE + S K R A+ S + + E + G+IT
Sbjct: 23 LNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGVIT---- 78
Query: 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGG 135
+ GN G+A+ A++ G IVMP ++ + A GA V L D+A
Sbjct: 79 ----ASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRDYDEAHR 134
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+ + E F + N T G EI +D D+D ++ +G GG
Sbjct: 135 YADKIAMDE--------NRTFIEAFNDRWVISGQGTIGLEIMEDLP-DLDQIIVPVGGGG 185
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTES-AMLNGGQPGRLL 233
++G K NPN+K+ G+E S +M + G+++
Sbjct: 186 LISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIV 224
|
Length = 406 |
| >gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 14/185 (7%)
Query: 25 GNTPMVYLNNVVD-GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIE 83
GNTP+V + + + K E + P S KDR + A+E G+ K+V
Sbjct: 21 GNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV----KAVACA 76
Query: 84 TTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKG 143
+TG NT LA AA G K ++ +P+ ++ + A GA V + G F+ LR
Sbjct: 77 STG-NTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVE--GNFDDALRLV 133
Query: 144 EEILSNTPNGFMFRQFENPANPKIH-YETTGPEIWKDSGGDV-DILVAGIGTGGTVTGSG 201
E+ N NP ++ +T EI + G +V D +V +G GG +T
Sbjct: 134 RELAEE--NWIYLSNSLNPY--RLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIW 189
Query: 202 RFLKE 206
+ KE
Sbjct: 190 KGFKE 194
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324 |
| >gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 20/218 (9%)
Query: 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK 78
D + + GNTP++ L N+ ++ K E P S KDR + + A+E+G +
Sbjct: 21 DVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEG----SE 76
Query: 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLR-ALGAEVYLADQAGGFE 137
+++ +T GNT A AA G K IIV+P ++ A GAE+ + G F+
Sbjct: 77 AIICAST-GNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIE--GNFD 133
Query: 138 GILRKGEEILSNTPNGFMFRQFENPANP-KIHYETTGP-EIWKDSGGDVDILVAGIGTGG 195
L+ I + P + N NP +I + T EI D+L +G G
Sbjct: 134 DALKAVRNIAAEEPITLV-----NSVNPYRIEGQKTAAFEICDQLQRAPDVLAIPVGNAG 188
Query: 196 TVT----GSGRFLKEKN-PNIKVYGVEPTESAMLNGGQ 228
+T G + KEK +++G E +A + G
Sbjct: 189 NITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGH 226
|
Length = 352 |
| >gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 44/201 (21%)
Query: 46 KLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLI 105
KLE ++ S K R A + + A P V+ +GGN G+ +A+ AA G
Sbjct: 42 KLEHLQHTGSFKARGAFNRLLAAPV-----PAAGVVA-ASGGNAGLAVAYAAAALGVPAT 95
Query: 106 IVMPSIASMERRIVLRALGAEVYL--ADQAGGFEGILRKGEEILSNTPNGFMFRQFENPA 163
+ +P A + LRALGAEV + A+ A E E G +
Sbjct: 96 VFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAAE------TGALL------- 142
Query: 164 NPKIH-YETTGPEI----------WKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIK 212
H Y+ PE+ ++ VD ++ +G GG + G + + +
Sbjct: 143 ---CHAYDQ--PEVLAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAGIAAWFE---GRAR 194
Query: 213 VYGVEPTESAMLNG----GQP 229
V VEP + L+ G+P
Sbjct: 195 VVAVEPEGAPTLHAALAAGEP 215
|
Length = 310 |
| >gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 8e-07
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 26/216 (12%)
Query: 25 GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIET 84
GNTP++ L N+ + K E + P S KDR + + A+E+G ++V+ +
Sbjct: 27 GNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEG----AEAVICAS 82
Query: 85 TGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALG-AEVYLAD---QAGGFEGIL 140
T GNT A A G K IV+P E ++ L L A +Y AD G F+ L
Sbjct: 83 T-GNTSAAAAAYATRAGLKAYIVIP-----EGKVALGKLAQAVMYGADIISIQGNFDEAL 136
Query: 141 RKGEEILSNTPNGFMFRQFENPANP-KIHYETTGP-EIWKDSGGDVDILVAGIGTGGTVT 198
+ E+ + N NP ++ + T EI + G D+L +G G ++
Sbjct: 137 KSVRELAETEAVTLV-----NSVNPYRLEGQKTAAFEICEQLGSAPDVLAIPVGNAGNIS 191
Query: 199 GSGRFLKEKNPNI-----KVYGVEPTESAMLNGGQP 229
+ KE N +++G E +A + G+P
Sbjct: 192 AYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKP 227
|
Length = 351 |
| >gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 41/209 (19%)
Query: 24 IGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVK-----DRIALSMIKDAEEKGLITPGK 78
+ TP Y + A + K E ++ + K ++IA ++ ++ ++ G+I
Sbjct: 18 VNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIA-NLSEEQKQHGVIA--- 73
Query: 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAG 134
+ GN G+A A G K +IVMP + + +ALGAEV L D+A
Sbjct: 74 -----ASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDEA- 127
Query: 135 GFEGILRKGEEILSNTPNGFMF-RQFENPANPKIHYE------TTGPEIWKDSGGDVDIL 187
+ L +E N F FE+ E T E+ D D+D++
Sbjct: 128 -YAFALEYAKE------NNLTFIHPFED-------EEVMAGQGTIALEML-DEISDLDMV 172
Query: 188 VAGIGTGGTVTGSGRFLKEKNPNIKVYGV 216
V +G GG ++G K+ NPNIK+ GV
Sbjct: 173 VVPVGGGGLISGIASAAKQINPNIKIIGV 201
|
Length = 403 |
| >gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 25/215 (11%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
A +K +++ +TP+ + + A I K E ++P S K R A + +K + L
Sbjct: 5 AARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL- 63
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE-------- 126
++ + GN G A+ G + MP+ ++ ++ G E
Sbjct: 64 ---AKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG 120
Query: 127 -VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYE-TTGPEIWKDSGGDV 184
+ A E + G G F++P I + T EI
Sbjct: 121 DTFDQCAAAAREHVEDHG---------GTFIPPFDDPR--IIEGQGTVAAEILDQLPEKP 169
Query: 185 DILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPT 219
D +V +G GG ++G +L +P K+ GVEP
Sbjct: 170 DYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPE 204
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409 |
| >gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 45/211 (21%)
Query: 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIA---LSMIKDAE-EKGLITPGKSVL 81
TP V+ + A + K E ++ S K+R A L ++ + E +G+I
Sbjct: 23 RTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIA------ 76
Query: 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGGFE 137
+ GN G+A+ A G IVMP + R GAEV L D+A
Sbjct: 77 --MSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGETLDEARAHA 134
Query: 138 GILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDIL 187
L + E G F +H Y+ T E+ +D+ D+D L
Sbjct: 135 RELAEEE--------GLTF----------VHPYDDPAVIAGQGTVALEMLEDAP-DLDTL 175
Query: 188 VAGIGTGGTVTGSGRFLKEKNPNIKVYGVEP 218
V IG GG ++G K P+I++ GV+
Sbjct: 176 VVPIGGGGLISGMATAAKALKPDIEIIGVQT 206
|
Length = 403 |
| >gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 42 RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL--ITPGKSVLIETTGGNTGIGLAFIAAL 99
+I K E P + KDRIA + ++ A G IT G T GN G +A+ A L
Sbjct: 32 KIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGITVG-------TCGNYGASIAYFARL 84
Query: 100 RGYKLIIVMPSIASMERRIVLRALGAEV 127
G K +I +P S R + GAE+
Sbjct: 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEI 112
|
Length = 319 |
| >gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-06
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 22 QLIGNTPMVY---LNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK 78
Q + TP+V+ LN ++ I K+E ++ + K R L+ + + +E+G + P K
Sbjct: 19 QYLHLTPIVHSESLNEMLG---HEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKL-PDK 74
Query: 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG 138
++ + GN G +A+ + L G K I +P S ++ G EV L + E
Sbjct: 75 --IVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNTRQEAEE 132
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVT 198
++ EE GF + + + T E + G D + A G GG ++
Sbjct: 133 KAKEDEE------QGFYYIHPSDSDSTIAGAGTLCYEALQQLGFSPDAIFASCGGGGLIS 186
Query: 199 GSGRFLKEKNPNIKVYGVEP 218
G+ + +P + G EP
Sbjct: 187 GTYLAKELISPTSLLIGSEP 206
|
Length = 338 |
| >gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 16/207 (7%)
Query: 15 AIKKDATQLIGN---TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK--DAE 69
I++ A ++ G TP+V ++ + C + KLE + S K R A + +
Sbjct: 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDT 64
Query: 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129
++ ++ + GN G LA+ AA G + I M + + +R LGAEV +
Sbjct: 65 QRAA------GVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRI 118
Query: 130 ADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVA 189
G + ++ E L M F++P T G E+ + D+ ++
Sbjct: 119 ---VGRSQDDAQEEVERLVADRGLTMLPPFDHPDIVAGQ-GTLGLEVVEQM-PDLATVLV 173
Query: 190 GIGTGGTVTGSGRFLKEKNPNIKVYGV 216
+ GG +G +K P+ +V GV
Sbjct: 174 PLSGGGLASGVAMAVKAARPDTRVIGV 200
|
Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. Length = 317 |
| >gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127
P +I T GN G +AF A G IV+P S+E+ +RALGAE+
Sbjct: 68 PRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAEL 119
|
Length = 322 |
| >gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-05
Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIA----LSMIKDAEEKGLITPGKSVLI 82
TP+V ++ + KLE ++P S K R A LS+ +G++T
Sbjct: 20 TPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVT------- 72
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGGFEG 138
+ GN G LA+ A G + I M + + +RALGAEV + D A E
Sbjct: 73 -ASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRSQDDAQ-AEV 130
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIHYE-TTGPEIWKDSGGDVDILVAGIGTGGTV 197
EE L+ P F++P I + T G EI + DV ++ + GG
Sbjct: 131 ERLVREEGLTMVP------PFDDPR--IIAGQGTIGLEILEALP-DVATVLVPLSGGGLA 181
Query: 198 TGSGRFLKEKNPNIKVYGVEPTE-SAM---LNGGQP 229
+G +K P I+V GV +AM L G+P
Sbjct: 182 SGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRP 217
|
Length = 322 |
| >gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-04
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 171 TTGPEIWKDSG--GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPT 219
T EI + G D + +G GG ++G +LKE++P K+ GVEP
Sbjct: 165 TVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPA 215
|
Length = 420 |
| >gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 46 KLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLI 105
KL+ ++P S KDR + +E+G+ V+I+++G N + LA + G K+
Sbjct: 77 KLDYLQPTGSFKDRGTYVTVAKLKEEGI----NEVVIDSSG-NAALSLALYSLSEGIKVH 131
Query: 106 IVMPSIASMERRIVLRALGAEVYLAD 131
+ + AS E+ +L LGAE++ +
Sbjct: 132 VFVSYNASKEKISLLSRLGAELHFVE 157
|
Length = 347 |
| >gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
G + T GN G G+A+ A G K ++ MP ++ ER +RA GAE + D
Sbjct: 112 GDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECTITD 166
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. Length = 396 |
| >gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 69 EEKGLITPGKSVLIETTGGNTGIGLAFI--AALRGYKLIIVMPSIASMERRIVLRALGA 125
++ + PG++VL+ G G+G A I A G ++ V ++S E+ +L+ LGA
Sbjct: 135 FDRAGLKPGETVLV--HGAAGGVGSAAIQLAKALGATVVAV---VSSSEKLELLKELGA 188
|
Length = 326 |
| >gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.001
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
G++ T GN G G+A+ A G K ++ MP ++ ER + LGAE + D
Sbjct: 93 GQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITD 147
|
This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase) [Energy metabolism, Other]. Length = 376 |
| >gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 40 VARIAAKLEMMEPCCSVKDR---IALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFI 96
+ R+ K E + P S K R + +S K+ K L P T GN G A
Sbjct: 94 IGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKHLAMP--------TNGNAGAAWAAY 145
Query: 97 AALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
AA G + I MP+ A R+ GAE+YL D
Sbjct: 146 AARAGIRATIFMPADAPEITRLECALAGAELYLVD 180
|
Length = 394 |
| >gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 41/141 (29%), Positives = 54/141 (38%), Gaps = 23/141 (16%)
Query: 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD-QAGGFEGILRK--G 143
GN +A A L G IVMP A + R G EV D E I R+
Sbjct: 81 GNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAE 140
Query: 144 EEILSNTPNGFMFRQFENPANPKIHYE------TTGPEIWKDSGGDVDILVAGIGTGGTV 197
E L+ P P H T E++ + G +D L +G GG +
Sbjct: 141 ERGLTLIP-------------PYDHPHVIAGQGTAAKELF-EEVGPLDALFVCLGGGGLL 186
Query: 198 TGSGRFLKEKNPNIKVYGVEP 218
+G + +P KVYGVEP
Sbjct: 187 SGCALAARALSPGCKVYGVEP 207
|
Length = 321 |
| >gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 42 RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRG 101
+ K P S KDR ++ A+E G T ++ + GNTG A AA G
Sbjct: 95 NLYVKELGHNPTGSFKDRGMTVLVSLAKELGAKT-----ILCASSGNTGASAAAYAARAG 149
Query: 102 YKLIIVMPS-IASMERRIVLRALGAEV 127
K+ ++ P S + + LGA V
Sbjct: 150 LKVFVLYPKGKVSPGKLAQMLTLGAHV 176
|
Length = 411 |
| >gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 65 IKDAEEKGLITP------GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRI 118
I + + L + G T GN G G+A+ A G K +I MP +S ER
Sbjct: 97 ISELSFEELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVD 156
Query: 119 VLRALGAEVYLAD 131
+RALGAE + D
Sbjct: 157 AIRALGAECIITD 169
|
Length = 399 |
| >gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 34/175 (19%)
Query: 41 ARIAAKLEMMEPCCSVKDR-IALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAAL 99
+ KLE ++P S K R I K A++ ++ ++GGN G+ A+ A
Sbjct: 16 CNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVH---VVCSSGGNAGLAAAYAARK 72
Query: 100 RGYKLIIVMPSIASMERRIV--LRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFR 157
G IV+P S + R+V LR GA V + + + EE+ N P
Sbjct: 73 LGVPCTIVVPE--STKPRVVEKLRDEGATVVVHGKVWWEADNYLR-EELAENDPGPVYVH 129
Query: 158 QFENPANPKIHYETTGPEIWK-------------DSGGDVDILVAGIGTGGTVTG 199
F++ P IW+ S VD +V +G GG + G
Sbjct: 130 PFDD------------PLIWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNG 172
|
Length = 316 |
| >gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 25 GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIET 84
G TP++ N+ KL+ + P S KDR ++++I EKG+ + E
Sbjct: 57 GRTPLIKKGNI--------WFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISED 103
Query: 85 TGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127
+ GN G +A A G ++ I +P AS + + + GAEV
Sbjct: 104 SSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEV 146
|
Length = 338 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 251 | |||
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 100.0 | |
| PLN03013 | 429 | cysteine synthase | 100.0 | |
| PLN02565 | 322 | cysteine synthase | 100.0 | |
| PLN02556 | 368 | cysteine synthase/L-3-cyanoalanine synthase | 100.0 | |
| PLN00011 | 323 | cysteine synthase | 100.0 | |
| KOG1252 | 362 | consensus Cystathionine beta-synthase and related | 100.0 | |
| TIGR01136 | 299 | cysKM cysteine synthases. This model discriminates | 100.0 | |
| TIGR01139 | 298 | cysK cysteine synthase A. This model distinguishes | 100.0 | |
| PRK11761 | 296 | cysM cysteine synthase B; Provisional | 100.0 | |
| TIGR01138 | 290 | cysM cysteine synthase B. Alternate name: O-acetyl | 100.0 | |
| COG1171 | 347 | IlvA Threonine dehydratase [Amino acid transport a | 100.0 | |
| PRK10717 | 330 | cysteine synthase A; Provisional | 100.0 | |
| cd01561 | 291 | CBS_like CBS_like: This subgroup includes Cystathi | 100.0 | |
| PLN02356 | 423 | phosphateglycerate kinase | 100.0 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 100.0 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 100.0 | |
| PRK07476 | 322 | eutB threonine dehydratase; Provisional | 100.0 | |
| PRK08638 | 333 | threonine dehydratase; Validated | 100.0 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 100.0 | |
| PRK06110 | 322 | hypothetical protein; Provisional | 100.0 | |
| PLN02970 | 328 | serine racemase | 100.0 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 100.0 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 100.0 | |
| TIGR02991 | 317 | ectoine_eutB ectoine utilization protein EutB. Mem | 100.0 | |
| PRK07048 | 321 | serine/threonine dehydratase; Validated | 100.0 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 100.0 | |
| PRK06608 | 338 | threonine dehydratase; Provisional | 100.0 | |
| PRK08246 | 310 | threonine dehydratase; Provisional | 100.0 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 100.0 | |
| PRK06815 | 317 | hypothetical protein; Provisional | 100.0 | |
| cd01562 | 304 | Thr-dehyd Threonine dehydratase: The first step in | 100.0 | |
| cd06448 | 316 | L-Ser-dehyd Serine dehydratase is a pyridoxal phos | 100.0 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 100.0 | |
| cd06447 | 404 | D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph | 100.0 | |
| PRK02991 | 441 | D-serine dehydratase; Provisional | 100.0 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 100.0 | |
| TIGR02035 | 431 | D_Ser_am_lyase D-serine ammonia-lyase. This family | 100.0 | |
| PRK08813 | 349 | threonine dehydratase; Provisional | 100.0 | |
| PRK06352 | 351 | threonine synthase; Validated | 100.0 | |
| PLN02550 | 591 | threonine dehydratase | 100.0 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 100.0 | |
| PRK08197 | 394 | threonine synthase; Validated | 100.0 | |
| PRK07591 | 421 | threonine synthase; Validated | 100.0 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 100.0 | |
| PRK06381 | 319 | threonine synthase; Validated | 100.0 | |
| KOG1250 | 457 | consensus Threonine/serine dehydratases [Amino aci | 100.0 | |
| PRK06721 | 352 | threonine synthase; Reviewed | 100.0 | |
| PRK07409 | 353 | threonine synthase; Validated | 100.0 | |
| PRK05638 | 442 | threonine synthase; Validated | 100.0 | |
| PRK06260 | 397 | threonine synthase; Validated | 100.0 | |
| cd01563 | 324 | Thr-synth_1 Threonine synthase is a pyridoxal phos | 100.0 | |
| PRK08329 | 347 | threonine synthase; Validated | 100.0 | |
| PLN02569 | 484 | threonine synthase | 100.0 | |
| PRK08206 | 399 | diaminopropionate ammonia-lyase; Provisional | 100.0 | |
| PRK06450 | 338 | threonine synthase; Validated | 100.0 | |
| cd00640 | 244 | Trp-synth-beta_II Tryptophan synthase beta superfa | 100.0 | |
| KOG1251 | 323 | consensus Serine racemase [Signal transduction mec | 100.0 | |
| PRK12391 | 427 | tryptophan synthase subunit beta; Reviewed | 100.0 | |
| TIGR01415 | 419 | trpB_rel pyridoxal-phosphate dependent TrpB-like e | 100.0 | |
| KOG1481 | 391 | consensus Cysteine synthase [Amino acid transport | 100.0 | |
| TIGR01747 | 376 | diampropi_NH3ly diaminopropionate ammonia-lyase fa | 100.0 | |
| TIGR03528 | 396 | 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem | 100.0 | |
| PRK13028 | 402 | tryptophan synthase subunit beta; Provisional | 100.0 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 100.0 | |
| PRK04346 | 397 | tryptophan synthase subunit beta; Validated | 100.0 | |
| TIGR00260 | 328 | thrC threonine synthase. Involved in threonine bio | 100.0 | |
| PLN02618 | 410 | tryptophan synthase, beta chain | 100.0 | |
| TIGR00263 | 385 | trpB tryptophan synthase, beta subunit. Tryptophan | 100.0 | |
| TIGR01275 | 311 | ACC_deam_rel pyridoxal phosphate-dependent enzymes | 100.0 | |
| PRK03910 | 331 | D-cysteine desulfhydrase; Validated | 100.0 | |
| PF00291 | 306 | PALP: Pyridoxal-phosphate dependent enzyme; InterP | 100.0 | |
| cd06446 | 365 | Trp-synth_B Tryptophan synthase-beta: Trptophan sy | 100.0 | |
| TIGR03844 | 398 | cysteate_syn cysteate synthase. Members of this fa | 100.0 | |
| cd06449 | 307 | ACCD Aminocyclopropane-1-carboxylate deaminase (AC | 100.0 | |
| TIGR01274 | 337 | ACC_deam 1-aminocyclopropane-1-carboxylate deamina | 100.0 | |
| PRK12390 | 337 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 100.0 | |
| PRK14045 | 329 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| COG0498 | 411 | ThrC Threonine synthase [Amino acid transport and | 100.0 | |
| COG0133 | 396 | TrpB Tryptophan synthase beta chain [Amino acid tr | 99.97 | |
| COG1350 | 432 | Predicted alternative tryptophan synthase beta-sub | 99.95 | |
| COG2515 | 323 | Acd 1-aminocyclopropane-1-carboxylate deaminase [A | 99.95 | |
| KOG1395 | 477 | consensus Tryptophan synthase beta chain [Amino ac | 99.93 | |
| PRK09225 | 462 | threonine synthase; Validated | 99.9 | |
| cd01560 | 460 | Thr-synth_2 Threonine synthase catalyzes the final | 99.89 | |
| COG3048 | 443 | DsdA D-serine dehydratase [Amino acid transport an | 99.81 | |
| PF03808 | 172 | Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp | 93.95 | |
| cd06533 | 171 | Glyco_transf_WecG_TagA The glycosyltransferase Wec | 92.25 | |
| TIGR00696 | 177 | wecB_tagA_cpsF bacterial polymer biosynthesis prot | 89.4 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 88.71 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 88.45 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 88.33 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 88.22 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.16 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 87.12 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 86.93 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 86.84 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 86.79 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 86.0 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 85.67 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 84.89 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 83.9 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 83.84 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 83.76 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 83.61 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 83.47 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 82.9 | |
| PRK15408 | 336 | autoinducer 2-binding protein lsrB; Provisional | 82.72 | |
| PRK08643 | 256 | acetoin reductase; Validated | 82.67 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 82.66 | |
| PF00764 | 388 | Arginosuc_synth: Arginosuccinate synthase; InterPr | 82.55 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 82.46 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 82.27 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 82.27 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 82.13 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 82.08 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 81.77 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 81.48 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 81.23 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 81.01 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 80.86 | |
| PF13433 | 363 | Peripla_BP_5: Periplasmic binding protein domain; | 80.83 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 80.67 | |
| TIGR01064 | 473 | pyruv_kin pyruvate kinase. This enzyme is a homote | 80.44 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 80.34 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 80.32 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 80.25 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 80.13 |
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=397.55 Aligned_cols=227 Identities=51% Similarity=0.830 Sum_probs=215.2
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
+.+.+.+++|||++++++....+++||+|+|.+||+||.|||.|.+|+.+|+++|.+++|.+ ||++||||+|.+||+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGT-IVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHHH
Confidence 45778899999999999988888999999999999999999999999999999999999987 99999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHhhcCCC-eEecCCCCCCchHHHHHhhHHHH
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG-FEGILRKGEEILSNTPN-GFMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~E 175 (251)
+.+|+|+++|||++++.++++.|+.|||+|+.++...+ +..+.+++++++++.|+ .+|.+||+||.|+++||.++++|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998434 88999999999999988 77888999999999999999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
|++|+++.+|+||+++|||||++|++++||+.+|++|+++|||++|+.+.+|. ++|.|+|||.+|+|.++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~ 231 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENL 231 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCccc
Confidence 99999888999999999999999999999999999999999999998888766 99999999999999654
|
|
| >PLN03013 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=400.84 Aligned_cols=232 Identities=64% Similarity=1.061 Sum_probs=217.6
Q ss_pred HHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLA 94 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA 94 (251)
.+++++.+.+++|||++++.+++..+++||+|+|++||+||||||+|.+++..++++|.+.+|+.+||++|+||||.|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 46788999999999999999988778899999999999999999999999999999999888866699999999999999
Q ss_pred HHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 95 FIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 95 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
++|+.+|++++||||+.+++.|+++|+.+||+|+.+++..+++++.+.+++++++.++++|++||+|+.++++||.++|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655778889999998887689999999999999789999999
Q ss_pred HHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 175 EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
||++|+.+++|+||+|+||||+++|++++||+.+|++||+||||++|+++.++.++++.++|||.+++|..+
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~ 343 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNL 343 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhH
Confidence 999999778999999999999999999999999999999999999999988888899999999999888754
|
|
| >PLN02565 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-55 Score=387.23 Aligned_cols=231 Identities=68% Similarity=1.092 Sum_probs=213.6
Q ss_pred HHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLA 94 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA 94 (251)
...+.++..+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.++|.+.+|.+.||++|+||||.|+|
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 34567888999999999988876667899999999999999999999999999999998888866799999999999999
Q ss_pred HHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 95 FIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 95 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
++|+.+|++|+||||+++++.|+++++.+||+|+.+++..+++++.+.+++++++.++.+|++||+|+.|+.+||.|+++
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~ 163 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGP 163 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987545678889999998876688999999999998889999999
Q ss_pred HHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 175 EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
||++|+.+.||+||+|+|+||+++|++++||+.+|++||++|||++|+++.++.+.++.++|||.+++|..
T Consensus 164 Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~ 234 (322)
T PLN02565 164 EIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGV 234 (322)
T ss_pred HHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCc
Confidence 99999976799999999999999999999999999999999999999999888888999999999988765
|
|
| >PLN02556 cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=387.08 Aligned_cols=231 Identities=58% Similarity=0.966 Sum_probs=215.1
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
+.+++.+.+++|||+++++++...|++||+|+|++||+||||||++.+++.+++++|.+.+|.++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 45788999999999999999888889999999999999999999999999999999999998767999999999999999
Q ss_pred HHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHH
Q 025563 96 IAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 175 (251)
+|+++|++|+||||+.++..|+++++.+||+|+.++...++..+++.+.++++++++++|++||+|+.++++||.++++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865445578888888888877899999999999997799999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
|++|+.+.+|+||+|+|||||++|++++|++.+|++||+||||++|+++.++.+.++.++|+|.++.|.++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~ 279 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDIL 279 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCcccc
Confidence 99998668999999999999999999999999999999999999999888888899999999999887664
|
|
| >PLN00011 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=373.42 Aligned_cols=234 Identities=71% Similarity=1.078 Sum_probs=212.8
Q ss_pred hHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHH
Q 025563 12 HKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGI 91 (251)
Q Consensus 12 ~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~ 91 (251)
+.....+.+...+++|||++++++++..|.+||+|+|++|||||||+|++.+++..++++|.+.+|..+||++|+||||+
T Consensus 3 ~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~ 82 (323)
T PLN00011 3 DRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGI 82 (323)
T ss_pred chhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHH
Confidence 33455667888899999999999887667899999999999999999999999999999998888755599999999999
Q ss_pred HHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhh
Q 025563 92 GLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYET 171 (251)
Q Consensus 92 alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 171 (251)
|+|++|+.+|++|+||||..+++.|+++++.+||+|+.++...+.+++++.+++++++.++++|++||+|+.++..||.+
T Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t 162 (323)
T PLN00011 83 GLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRT 162 (323)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHH
Confidence 99999999999999999999999999999999999999987544456778888888876678999999999988779999
Q ss_pred HHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 172 TGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 172 ~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
+++||++|+.+.||+||+|+|+||+++|++++|++.+|++||+||||++|+++..+.+.++.++|++.+.+|..
T Consensus 163 ~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 236 (323)
T PLN00011 163 TGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFN 236 (323)
T ss_pred HHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcc
Confidence 99999999866899999999999999999999999999999999999999999888888999999999887765
|
|
| >KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=370.08 Aligned_cols=234 Identities=61% Similarity=0.947 Sum_probs=221.3
Q ss_pred HHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHH
Q 025563 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGL 93 (251)
Q Consensus 14 ~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~al 93 (251)
..+...+.+.+|+|||+++++....+.++||+|+|.+||+||.|||.++.|+.+|+.+|.+.||+++++++||||+|.+|
T Consensus 40 ~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigL 119 (362)
T KOG1252|consen 40 ILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGL 119 (362)
T ss_pred hhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHH
Confidence 34456788999999999999998888889999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHH---HHHHHHHHhhcCCCeEecCCCCCCchHHHHHh
Q 025563 94 AFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG---ILRKGEEILSNTPNGFMFRQFENPANPKIHYE 170 (251)
Q Consensus 94 A~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 170 (251)
|++|+..|+||+++||+.++.+|+..|+.+||+|++++....++. +...+.++..+.|+.+.++||+||.|+.+||.
T Consensus 120 A~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ 199 (362)
T KOG1252|consen 120 AYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYE 199 (362)
T ss_pred HHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccc
Confidence 999999999999999999999999999999999999997655555 88889999999999999999999999999999
Q ss_pred hHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCc--eeecccCCcccccccc
Q 025563 171 TTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGR--LLFFLFFLFFFCFFFS 247 (251)
Q Consensus 171 t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~--~~i~g~g~~~~~~~~~ 247 (251)
++++||+.|+.+++|.||.++|||||++|+.+++++.+|++||++|||.+|..+.+..+++ |.|+|||+||+|..+-
T Consensus 200 ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld 278 (362)
T KOG1252|consen 200 TTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLD 278 (362)
T ss_pred cccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccc
Confidence 9999999999999999999999999999999999999999999999999999999888888 9999999999998753
|
|
| >TIGR01136 cysKM cysteine synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-52 Score=364.90 Aligned_cols=225 Identities=55% Similarity=0.898 Sum_probs=207.3
Q ss_pred hcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHC
Q 025563 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALR 100 (251)
Q Consensus 21 ~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 100 (251)
...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..++++|.+.+|.+ |+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDT-IIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHc
Confidence 45789999999999998888999999999999999999999999999999998777765 99999999999999999999
Q ss_pred CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhh
Q 025563 101 GYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDS 180 (251)
Q Consensus 101 G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~ 180 (251)
|++|+||||+..++.|+++++.+||+|+.+++..+++++.+.+++++++.+++++++||+|+.++..||.+++.||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997655788999999998876568899999999986679999999999999
Q ss_pred CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 181 GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 181 ~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
++.||+||+|+|+||+++|++.+|++.+|.+||++|||++|+++.++.++++.+++|+.+.+|..+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 226 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKIL 226 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccC
Confidence 767999999999999999999999999999999999999999998877888889999988777543
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. |
| >TIGR01139 cysK cysteine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=363.20 Aligned_cols=224 Identities=55% Similarity=0.896 Sum_probs=203.7
Q ss_pred hcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHC
Q 025563 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALR 100 (251)
Q Consensus 21 ~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 100 (251)
...+++|||+++++ ....|.+||+|+|++|||||||+|++.+++..+.++|.+.+|.+ |+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKT-IVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 45678899999999999999999999999999999998777765 99999999999999999999
Q ss_pred CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCC-eEecCCCCCCchHHHHHhhHHHHHhhh
Q 025563 101 GYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPN-GFMFRQFENPANPKIHYETTGPEIWKD 179 (251)
Q Consensus 101 G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~EI~~q 179 (251)
|++|+||||+++++.|++.++.+||+|+.+++..+++++.+.+++++++.++ +++++||+|+.++..||.++++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864456788889998888744 558999999998778999999999999
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 180 SGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 180 ~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
++..||+||+|+|+||+++|++.+|++.+|++||++|||.+|+++....+.++.++|||.+.+|..+
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~ 226 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNL 226 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCcc
Confidence 9667999999999999999999999999999999999999999888878888899999988777643
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. |
| >PRK11761 cysM cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-52 Score=363.95 Aligned_cols=208 Identities=45% Similarity=0.735 Sum_probs=193.8
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
+++++...+++|||+++++|....|++||+|+|++|||||||+|++.+++.++.++|.+.+|++ ||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT-LIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHH
Confidence 3567888899999999999988888999999999999999999999999999999998777766 999999999999999
Q ss_pred HHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHH
Q 025563 96 IAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 175 (251)
+|+.+|++|+||||+.+++.|+++++.+||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.++++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999997556788888899988876 789999999999988789999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|++|+++.+|+||+|+|+||+++|++++||+.+|++||+||||++++++.
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~ 209 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIP 209 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCc
Confidence 99999767999999999999999999999999999999999999987774
|
|
| >TIGR01138 cysM cysteine synthase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-51 Score=356.86 Aligned_cols=217 Identities=43% Similarity=0.704 Sum_probs=196.0
Q ss_pred hhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHH
Q 025563 20 ATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAAL 99 (251)
Q Consensus 20 v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 99 (251)
|.+.+++|||+++++++...|.+||+|+|++||+||||+|++.+++..+.++|.+.++++ ||++|+||||+|+|++|++
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCE-EEEECCChHHHHHHHHHHH
Confidence 456799999999999988888999999999999999999999999999999998777766 9999999999999999999
Q ss_pred CCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhh
Q 025563 100 RGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKD 179 (251)
Q Consensus 100 ~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q 179 (251)
+|++|+||||+..++.|+++++.+||+|+.+++..+++++.+.+++++++. +.+|++||+|+.++..||.++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987556788888999998887 4568999999999987899999999999
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 180 SGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 180 ~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
+...+|+||+|+|+||+++|++.+||+.+|++||++|||.+|+.+.+ +.+++.++.|.+
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~ 218 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGI 218 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcc
Confidence 97679999999999999999999999999999999999999876532 345555555553
|
Alternate name: O-acetylserine (thiol)-lyase |
| >COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=361.03 Aligned_cols=212 Identities=25% Similarity=0.299 Sum_probs=198.8
Q ss_pred ccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q 025563 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86 (251)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss 86 (251)
+.++.+|..++.++...+.+|||++++.|++.+|++||+|+|++||+||||.|+|++.+..+.+.+.... .||++|+
T Consensus 6 ~~~~~~i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~---gViaaSa 82 (347)
T COG1171 6 PVSLADILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAA---GVIAASA 82 (347)
T ss_pred cccHHHHHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhcC---ceEEecC
Confidence 4468999999999999999999999999999999999999999999999999999999998754432222 3999999
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHH
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPK 166 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 166 (251)
||||+++|++|+++|+|++||||.+++..|++.+|.|||+|+.++. +|+++.+.++++++++ |+.|+++||+|+.+
T Consensus 83 GNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi- 158 (347)
T COG1171 83 GNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDVI- 158 (347)
T ss_pred CcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCccee-
Confidence 9999999999999999999999999999999999999999999998 6999999999999998 99999999999999
Q ss_pred HHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 167 IHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+||.|++.||++|+...||+||||+|+||+++|++.+++...|++|||||||++++++.
T Consensus 159 AGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~ 217 (347)
T COG1171 159 AGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMY 217 (347)
T ss_pred ecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHH
Confidence 59999999999999655799999999999999999999999999999999999999876
|
|
| >PRK10717 cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-50 Score=357.38 Aligned_cols=227 Identities=45% Similarity=0.697 Sum_probs=198.1
Q ss_pred HHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFI 96 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 96 (251)
++.+...+++|||++++++++.+|++||+|+|++||+||||+|++.+++..++++|.+.+|.+ ||++|+||||+|+|++
T Consensus 4 ~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~ 82 (330)
T PRK10717 4 FEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGT-IVEGTAGNTGIGLALV 82 (330)
T ss_pred hhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHH
Confidence 567888899999999999999889999999999999999999999999999999998777766 9999999999999999
Q ss_pred HHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCC------ChHHHHHHHHHHhhcCC-CeEecCCCCCCchHHHHH
Q 025563 97 AALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG------GFEGILRKGEEILSNTP-NGFMFRQFENPANPKIHY 169 (251)
Q Consensus 97 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~------~~~~~~~~a~~~~~~~~-~~~~~~~~~n~~~~~~g~ 169 (251)
|+++|++|+||||..+++.|+++++.+||+|+.+++.. ..+.+.+.++++.++.+ +++|++||+|+.++..||
T Consensus 83 a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 162 (330)
T PRK10717 83 AAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHY 162 (330)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHH
Confidence 99999999999999999999999999999999998631 11233444555544433 789999999999887799
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC---C---CCCceeecccCCcccc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG---G---QPGRLLFFLFFLFFFC 243 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~---~---~~~~~~i~g~g~~~~~ 243 (251)
.+++.||++|++..+|+||+|+|+||+++|++.+|++..|++||++|||++|+.+.. + ..+++.++|||.+.+|
T Consensus 163 ~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~ 242 (330)
T PRK10717 163 ETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRIT 242 (330)
T ss_pred HhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCC
Confidence 999999999997679999999999999999999999999999999999999954321 2 2456889999988766
Q ss_pred c
Q 025563 244 F 244 (251)
Q Consensus 244 ~ 244 (251)
.
T Consensus 243 ~ 243 (330)
T PRK10717 243 A 243 (330)
T ss_pred c
Confidence 4
|
|
| >cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=350.30 Aligned_cols=220 Identities=55% Similarity=0.878 Sum_probs=199.9
Q ss_pred CCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcE
Q 025563 25 GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKL 104 (251)
Q Consensus 25 ~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~ 104 (251)
|+|||+++++|++..|.+||+|+|++||+||||+|++.+++..+.++|+..++.+ |+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTT-IIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHcCCeE
Confidence 6899999999998888999999999999999999999999999999988666555 999999999999999999999999
Q ss_pred EEEecCCCcHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC
Q 025563 105 IIVMPSIASMERRIVLRALGAEVYLADQAG--GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG 182 (251)
Q Consensus 105 ~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~ 182 (251)
+||||..+++.|+++++.+||+|+.++... +++++.+.++++++++++++|+++|+||.+++.++.++++||.+|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999752 347888889988887668999999999999974445999999999976
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 183 DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 183 ~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
.||+||+|+|+||+++|++.+|++..|++||++|||++|+++.+....++.++|||.+++|..
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 222 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPEN 222 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCc
Confidence 899999999999999999999999999999999999999988666677888999998866554
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. |
| >PLN02356 phosphateglycerate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=362.30 Aligned_cols=231 Identities=37% Similarity=0.580 Sum_probs=196.4
Q ss_pred HHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLA 94 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA 94 (251)
.....+.+.+++|||+++++|+...|.+||+|+|++||+||||||++.+++.++.++|.+.++.+ |+++|+||||.|+|
T Consensus 42 ~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~-VveaSSGN~g~alA 120 (423)
T PLN02356 42 KPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLA 120 (423)
T ss_pred chhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCE-EEEeCCHHHHHHHH
Confidence 34556888899999999999988889999999999999999999999999999999998777766 88899999999999
Q ss_pred HHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-----CCh-HHHH---HHHHHHhhc----------------
Q 025563 95 FIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-----GGF-EGIL---RKGEEILSN---------------- 149 (251)
Q Consensus 95 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-----~~~-~~~~---~~a~~~~~~---------------- 149 (251)
++|+.+|++|+||||+++++.|++.++.+||+|+.+++. .++ ..+. +.+.+++++
T Consensus 121 ~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~ 200 (423)
T PLN02356 121 TVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTN 200 (423)
T ss_pred HHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 999999999999999999999999999999999999641 122 1111 234444432
Q ss_pred ----------------CCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEE
Q 025563 150 ----------------TPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKV 213 (251)
Q Consensus 150 ----------------~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~v 213 (251)
.++.+|++||+|+.++.+++..+|+||++|+++++|+||+|+||||+++|++++||+.+|++||
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkV 280 (423)
T PLN02356 201 GCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKC 280 (423)
T ss_pred cccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEE
Confidence 1478999999999998777777799999999778999999999999999999999999999999
Q ss_pred EEEeCCCCccccC-------------C----CCCceeecccCCccccccc
Q 025563 214 YGVEPTESAMLNG-------------G----QPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 214 igVep~~s~~~~~-------------~----~~~~~~i~g~g~~~~~~~~ 246 (251)
++|||++|+.+.. | .+.++.++|||.+++|..+
T Consensus 281 igVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~ 330 (423)
T PLN02356 281 FLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNF 330 (423)
T ss_pred EEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhH
Confidence 9999999864421 1 1236889999998877653
|
|
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-50 Score=365.95 Aligned_cols=208 Identities=27% Similarity=0.390 Sum_probs=194.9
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+++. ..+||++|+||
T Consensus 5 ~~~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN 80 (404)
T PRK08198 5 TLDDIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGN 80 (404)
T ss_pred CHHHHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCH
Confidence 68899999999999999999999999998889999999999999999999999999998875543 23499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+++|++|+++|++|+||||+.++..|+++++.+||+|+.++. +++++.+.+.+++++. +++|++||+|+.+++ |
T Consensus 81 ~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~~-g 156 (404)
T PRK08198 81 HAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDVIA-G 156 (404)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccHHH-H
Confidence 99999999999999999999999999999999999999999975 6899999999998886 899999999999985 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|.|+|+||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||||||++|+++.
T Consensus 157 ~~t~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~ 212 (404)
T PRK08198 157 QGTIGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMP 212 (404)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHH
Confidence 999999999999 47999999999999999999999999999999999999998874
|
|
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-50 Score=364.70 Aligned_cols=209 Identities=25% Similarity=0.316 Sum_probs=195.1
Q ss_pred cchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccC
Q 025563 8 EDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGG 87 (251)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssG 87 (251)
.++++|..+++++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+.+. ...||++|+|
T Consensus 2 ~~~~~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaG 77 (403)
T PRK08526 2 LELNKIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAG 77 (403)
T ss_pred CCHHHHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECcc
Confidence 468899999999999999999999999999889999999999999999999999999988776543 2249999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHH
Q 025563 88 NTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKI 167 (251)
Q Consensus 88 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 167 (251)
|||+++|++|+++|++|+||||+.++..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++||+|+.++ +
T Consensus 78 Nhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~ 153 (403)
T PRK08526 78 NHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-A 153 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-h
Confidence 999999999999999999999999999999999999999999986 6899999999998886 78999999999988 5
Q ss_pred HHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 168 HYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 168 g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
||.|++.||++|+ +++|+||+|+|+||+++|++.++|+.+|++||+||||++|+++.
T Consensus 154 G~gtia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~ 210 (403)
T PRK08526 154 GQGTIALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMY 210 (403)
T ss_pred hhHHHHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHH
Confidence 9999999999999 47999999999999999999999999999999999999999873
|
|
| >PRK07476 eutB threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-50 Score=355.90 Aligned_cols=208 Identities=23% Similarity=0.292 Sum_probs=194.2
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++.+|..++.++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.+++.. .+||++|+||
T Consensus 2 ~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~----~gvv~aSsGN 77 (322)
T PRK07476 2 SLADIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERA----RGVVTASTGN 77 (322)
T ss_pred CHHHHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhC----CeEEEECCCh
Confidence 378899999999999999999999999988899999999999999999999999999999888752 2399999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+|+|++|+++|++|+||||+.+++.|++.++.+||+|+.++. +++++.+.+.+++++. +++|++|++|+.+++ |
T Consensus 78 ~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g 153 (322)
T PRK07476 78 HGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRIIA-G 153 (322)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcceee-c
Confidence 99999999999999999999999999999999999999999986 5788889999988876 789999999999995 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|.++++||++|+. ++|+||+|+|+||+++|++.+|++.+|++||+||||++++++.
T Consensus 154 ~~t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~ 209 (322)
T PRK07476 154 QGTIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMH 209 (322)
T ss_pred hhHHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 9999999999994 7999999999999999999999999999999999999988654
|
|
| >PRK08638 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=355.33 Aligned_cols=223 Identities=26% Similarity=0.309 Sum_probs=199.5
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++..|++||+|+|++||+||||||++.+++..+.+... ...|+++|+||
T Consensus 10 ~~~~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN 85 (333)
T PRK08638 10 AIDDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGN 85 (333)
T ss_pred CHHHHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcH
Confidence 47899999999999999999999999988888999999999999999999999999988765332 12499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||.|+|++|+.+|++|+||||++.++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+++ |
T Consensus 86 ~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~~-g 161 (333)
T PRK08638 86 HAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKVIA-G 161 (333)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcchhc-c
Confidence 99999999999999999999999999999999999999999975 6889999999998886 789999999999985 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCCCceeec-ccCCc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN----GGQPGRLLFF-LFFLF 240 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~----~~~~~~~~i~-g~g~~ 240 (251)
|.++++||++|+ +++|+||+|+|+||+++|++.+||+.+|++||++|||++|+++. .+.+.++... +++.|
T Consensus 162 ~~t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~g 237 (333)
T PRK08638 162 QGTIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADG 237 (333)
T ss_pred ccHHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeecc
Confidence 999999999999 57999999999999999999999999999999999999997654 4555544433 45554
|
|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=364.07 Aligned_cols=224 Identities=25% Similarity=0.323 Sum_probs=202.9
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++..|++||+|+|++||+||||+|++.+++..+.+.+. . ..||++|+||
T Consensus 8 ~~~~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~-~---~gvv~aSsGN 83 (406)
T PRK06382 8 SFDDILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL-R---NGVITASAGN 83 (406)
T ss_pred CHHHHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc-C---CeEEEECCCH
Confidence 58899999999999999999999999998899999999999999999999999999988766543 1 2399999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+|+|++|+++|++|+||||+.++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+++ |
T Consensus 84 ~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i~-g 159 (406)
T PRK06382 84 HAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVIS-G 159 (406)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHHH-H
Confidence 99999999999999999999999999999999999999999986 5899999999998886 889999999999986 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCC-----CCceeecccCC
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN----GGQ-----PGRLLFFLFFL 239 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~----~~~-----~~~~~i~g~g~ 239 (251)
|.|+++||++|+ +++|+||+|+|+||+++|++.++++.+|++||+||||++|+++. .+. ..++..+|++.
T Consensus 160 ~~t~~~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~ 238 (406)
T PRK06382 160 QGTIGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISV 238 (406)
T ss_pred HHHHHHHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccC
Confidence 999999999999 47999999999999999999999999999999999999998862 232 23456778877
Q ss_pred cc
Q 025563 240 FF 241 (251)
Q Consensus 240 ~~ 241 (251)
+.
T Consensus 239 ~~ 240 (406)
T PRK06382 239 KY 240 (406)
T ss_pred CC
Confidence 54
|
|
| >PRK06110 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=352.49 Aligned_cols=210 Identities=21% Similarity=0.258 Sum_probs=193.8
Q ss_pred ccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q 025563 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86 (251)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss 86 (251)
|-++++|..+++++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++..+.+++...+ .||++|+
T Consensus 2 ~~~~~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~---~vv~aSs 78 (322)
T PRK06110 2 MFTLAELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVR---GVISATR 78 (322)
T ss_pred CCCHHHHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCc---eEEEECC
Confidence 3368899999999999999999999999998889999999999999999999999999999988775433 3999999
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHH
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPK 166 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 166 (251)
||||+|+|++|+++|++|+||||+..++.|+++++.+||+|+.+++ +++++.+.++++++++ ++||++++ |+.+++
T Consensus 79 GN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~~ 154 (322)
T PRK06110 79 GNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDLVR 154 (322)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChHHh
Confidence 9999999999999999999999999999999999999999999975 6889999999998886 78999998 667775
Q ss_pred HHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 167 IHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
||.++++||++|++ ++|+||+|+|+||+++|++.++++.+|++||++|||++|+++.
T Consensus 155 -G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~ 211 (322)
T PRK06110 155 -GVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYA 211 (322)
T ss_pred -ccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHH
Confidence 99999999999995 7999999999999999999999999999999999999998864
|
|
| >PLN02970 serine racemase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=353.12 Aligned_cols=208 Identities=19% Similarity=0.231 Sum_probs=193.3
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+.+++...+++|||++++++++..|.+||+|+|++||+||||||++.+++..+.+++. ...||++|+||
T Consensus 10 ~~~~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN 85 (328)
T PLN02970 10 DLSSIREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGN 85 (328)
T ss_pred CHHHHHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcH
Confidence 47899999999999999999999999998888999999999999999999999999999875553 22499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||.|+|++|+.+|++|+||||++.++.|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+++ |
T Consensus 86 ~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~~~-g 161 (328)
T PLN02970 86 HAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRVIS-G 161 (328)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchhh-e
Confidence 99999999999999999999999999999999999999999997 5788888899998874 899999999999886 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|.++++||++|++ .||+||+|+|+||+++|++++||+.+|++||++|||++|+++.
T Consensus 162 ~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~ 217 (328)
T PLN02970 162 QGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAA 217 (328)
T ss_pred hHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHH
Confidence 9999999999995 6999999999999999999999999999999999999998764
|
|
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-49 Score=364.31 Aligned_cols=227 Identities=43% Similarity=0.691 Sum_probs=198.9
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
+.+...+++|||++++++++..|.+||+|+|++||+||||+|+|.+++.++.++|++.+|++ ||++|+||||+|+|++|
T Consensus 3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~~ssGN~g~alA~~a 81 (454)
T TIGR01137 3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDT-IIEPTSGNTGIGLALVA 81 (454)
T ss_pred cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHHH
Confidence 45677899999999999998888899999999999999999999999999999998888765 99999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChH---HHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE---GILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
+++|++|++|||+.+++.|+++++.+||+|+.+++...++ ...+.+++++++.++.+|++||+|+.++.+||.++|+
T Consensus 82 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 161 (454)
T TIGR01137 82 AIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGP 161 (454)
T ss_pred HHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHH
Confidence 9999999999999999999999999999999998642233 3356677777765577889999999998779999999
Q ss_pred HHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCC-----CCCceeecccCCcccccc
Q 025563 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGG-----QPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 175 EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~-----~~~~~~i~g~g~~~~~~~ 245 (251)
||++|+++.||+||+|+||||+++|++.+|++.+|++||+||||++|+...+. ...++.++|+|.+++|..
T Consensus 162 Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 237 (454)
T TIGR01137 162 EILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTV 237 (454)
T ss_pred HHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCc
Confidence 99999976799999999999999999999999999999999999999643221 223568899998766654
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=362.02 Aligned_cols=225 Identities=24% Similarity=0.272 Sum_probs=202.9
Q ss_pred cccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEec
Q 025563 6 SMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETT 85 (251)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s 85 (251)
+|-++++|..+++++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+... ...+|++|
T Consensus 3 ~~~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aS 78 (403)
T PRK07334 3 LMVTLADIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMS 78 (403)
T ss_pred CCcCHHHHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEEC
Confidence 45578999999999999999999999999998888999999999999999999999999988654432 12399999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchH
Q 025563 86 GGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANP 165 (251)
Q Consensus 86 sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~ 165 (251)
+||||+|+|++|+++|++|+||||...++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.++
T Consensus 79 sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~ 155 (403)
T PRK07334 79 AGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAVI 155 (403)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999975 6889999999998885 88999999999998
Q ss_pred HHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC---C----CCCceeecccC
Q 025563 166 KIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG---G----QPGRLLFFLFF 238 (251)
Q Consensus 166 ~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~---~----~~~~~~i~g~g 238 (251)
+ ||.|+++||++|+ +.+|+||+|+|+||+++|++++|++.+|++||++|||++|++++. + ...++.++||+
T Consensus 156 ~-g~~t~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 233 (403)
T PRK07334 156 A-GQGTVALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIA 233 (403)
T ss_pred H-hHHHHHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceec
Confidence 5 9999999999999 579999999999999999999999999999999999999988753 1 12356788888
Q ss_pred C
Q 025563 239 L 239 (251)
Q Consensus 239 ~ 239 (251)
.
T Consensus 234 ~ 234 (403)
T PRK07334 234 V 234 (403)
T ss_pred C
Confidence 4
|
|
| >TIGR02991 ectoine_eutB ectoine utilization protein EutB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=347.00 Aligned_cols=208 Identities=21% Similarity=0.294 Sum_probs=191.8
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++..+.+... ..++|++|+||
T Consensus 2 ~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN 77 (317)
T TIGR02991 2 TLQDIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGN 77 (317)
T ss_pred CHHHHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCH
Confidence 37899999999999999999999999998888999999999999999999999999988654321 12399999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||.|+|++|+++|++|++|||+..++.|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+++ |
T Consensus 78 ~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g 153 (317)
T TIGR02991 78 HGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIVA-G 153 (317)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHHh-h
Confidence 99999999999999999999999999999999999999999997 5788888999998876 889999999999985 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|.++++||++|+ +++|+||+|+|+||+++|++++||+.+|++||+||||++++++.
T Consensus 154 ~~t~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~ 209 (317)
T TIGR02991 154 QGTLGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMK 209 (317)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 999999999999 46899999999999999999999999999999999999888775
|
Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. |
| >PRK07048 serine/threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=348.61 Aligned_cols=210 Identities=21% Similarity=0.263 Sum_probs=193.5
Q ss_pred cccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEec
Q 025563 6 SMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETT 85 (251)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s 85 (251)
.|.+++++..+++++...+++|||++++++++..|.+||+|+|++||+||||+|++.+++.++.+.+. ..+||++|
T Consensus 4 ~~~~~~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aS 79 (321)
T PRK07048 4 LLPTYDDVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFS 79 (321)
T ss_pred ccCCHHHHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeC
Confidence 45678899999999999999999999999988888999999999999999999999999998775432 12399999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchH
Q 025563 86 GGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANP 165 (251)
Q Consensus 86 sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~ 165 (251)
+||||+|+|++|+.+|++|++|||...++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.++
T Consensus 80 sGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~ 156 (321)
T PRK07048 80 SGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHVI 156 (321)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcchh
Confidence 99999999999999999999999999999999999999999999996 4778888889998886 78999999999998
Q ss_pred HHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 166 KIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 166 ~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
+ ||.++++||++|++ .||+||+|+|+||+++|++.++++.+|++||+||||++|+++
T Consensus 157 ~-g~~t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~ 213 (321)
T PRK07048 157 A-GQGTAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDG 213 (321)
T ss_pred h-ccchHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhH
Confidence 5 99999999999994 799999999999999999999999999999999999999864
|
|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=359.48 Aligned_cols=228 Identities=21% Similarity=0.293 Sum_probs=199.5
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++.+.+++|||++++++++..|++||+|+|++|||||||+|+|.+++..+.+.. . ...||++|+||
T Consensus 8 ~~~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~-~---~~~Vv~aSsGN 83 (420)
T PRK08639 8 SAKDIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEE-L---AAGVVCASAGN 83 (420)
T ss_pred CHHHHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHh-h---CCEEEEECccH
Confidence 5899999999999999999999999999888999999999999999999999999998843221 1 22499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD-QAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKI 167 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 167 (251)
||.++|++|+++|++|+||||+.++..|++.++.+||+|+.|. ...+++++.+.+.+++++. |++|++||+|+.+++
T Consensus 84 ~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~~- 161 (420)
T PRK08639 84 HAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVIA- 161 (420)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHhc-
Confidence 9999999999999999999999999999999999999754432 1236899999999998886 899999999999985
Q ss_pred HHhhHHHHHhhhhCCC--CCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CCC-----Cceeecc
Q 025563 168 HYETTGPEIWKDSGGD--VDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG----GQP-----GRLLFFL 236 (251)
Q Consensus 168 g~~t~~~EI~~q~~~~--~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~----~~~-----~~~~i~g 236 (251)
||.|+|.||++|+++. ||+||+|+|+||+++|++.++++.+|++||+||||++|+++.. +.+ ....++|
T Consensus 162 G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g 241 (420)
T PRK08639 162 GQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDG 241 (420)
T ss_pred chhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecc
Confidence 9999999999999655 9999999999999999999999999999999999999988742 222 2455677
Q ss_pred cCCccc
Q 025563 237 FFLFFF 242 (251)
Q Consensus 237 ~g~~~~ 242 (251)
++...+
T Consensus 242 i~v~~~ 247 (420)
T PRK08639 242 AAVARV 247 (420)
T ss_pred cccCCc
Confidence 776544
|
|
| >PRK06608 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=349.19 Aligned_cols=207 Identities=20% Similarity=0.223 Sum_probs=191.5
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+++++...+++|||+++++|++.+|++||+|+|++||+||||+|++.+++.++.++|.+. .+||++|+||
T Consensus 6 ~~~~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN 82 (338)
T PRK06608 6 NPQNIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGN 82 (338)
T ss_pred CHHHHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCH
Confidence 4899999999999999999999999999989999999999999999999999999999999988643 2499999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+|+|++|+++|++|++|||..+++.|+++++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.+++ |
T Consensus 83 ~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~-g 156 (338)
T PRK06608 83 HGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTIA-G 156 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHhc-c
Confidence 99999999999999999999999999999999999999999974 3677777777 554 4889999999999985 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
|.+++.||++|++.+||+||+|+|+||+++|++.++++.++++||+||||++|+++
T Consensus 157 ~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~ 212 (338)
T PRK06608 157 AGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDA 212 (338)
T ss_pred HHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHH
Confidence 99999999999976899999999999999999999999999999999999999765
|
|
| >PRK08246 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=343.33 Aligned_cols=217 Identities=25% Similarity=0.361 Sum_probs=194.3
Q ss_pred ccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q 025563 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86 (251)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss 86 (251)
|.++++|..+++++...+++|||+++++++.. +.+||+|+|++|||||||+|++.+++..+.+ + +. .||++|+
T Consensus 4 ~~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~----~~-~vv~aSs 76 (310)
T PRK08246 4 MITRSDVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P----AA-GVVAASG 76 (310)
T ss_pred CCCHHHHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c----CC-eEEEeCC
Confidence 56799999999999999999999999998876 7899999999999999999999999988655 2 23 4999999
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHH
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPK 166 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 166 (251)
||||+|+|++|+++|++|+||||+.+++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+++
T Consensus 77 GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i~ 153 (310)
T PRK08246 77 GNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEVLA 153 (310)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhhhc
Confidence 9999999999999999999999999999999999999999999986 5788999999988876 899999999999985
Q ss_pred HHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CCCCceeecccC
Q 025563 167 IHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG----GQPGRLLFFLFF 238 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~----~~~~~~~i~g~g 238 (251)
||.++++||++|+ +.||+||+|+|+||+++|++.+|+. ++||++|||++|+++.. +.+.++...+++
T Consensus 154 -g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~ 224 (310)
T PRK08246 154 -GAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIA 224 (310)
T ss_pred -chHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCce
Confidence 9999999999999 5799999999999999999999964 48999999999987753 555555555543
|
|
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=356.35 Aligned_cols=228 Identities=20% Similarity=0.272 Sum_probs=197.9
Q ss_pred hhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHH
Q 025563 11 HHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTG 90 (251)
Q Consensus 11 ~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g 90 (251)
++|..+.+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+.. .. ..||++|+||||
T Consensus 1 ~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~-~~---~gvv~aSsGN~g 76 (409)
T TIGR02079 1 QDIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQ-LA---KGVVCASAGNHA 76 (409)
T ss_pred ChHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHh-hC---CEEEEECccHHH
Confidence 36788999999999999999999999888999999999999999999999999998743322 12 249999999999
Q ss_pred HHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 91 IGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD-QAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 91 ~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
+++|++|+++|++|+||||+.++..|++.++.+||+++.+. ...+++++.+.+.+++++. +++|++||+|+.+++ ||
T Consensus 77 ~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~ 154 (409)
T TIGR02079 77 QGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDH-GGTFIPPFDDPRIIE-GQ 154 (409)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhc-CCEEeCCCCCHhHhh-hh
Confidence 99999999999999999999999999999999999754321 1236899999999998886 789999999999985 99
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CCC-----CceeecccCCc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG----GQP-----GRLLFFLFFLF 240 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~----~~~-----~~~~i~g~g~~ 240 (251)
.|++.||++|+...||+||+|+|+||+++|++.+||+.+|++||+||||++|+++.. +.+ .+...+|++.+
T Consensus 155 ~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~ 234 (409)
T TIGR02079 155 GTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVK 234 (409)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCC
Confidence 999999999997669999999999999999999999999999999999999988753 322 23456777776
Q ss_pred cccc
Q 025563 241 FFCF 244 (251)
Q Consensus 241 ~~~~ 244 (251)
.++.
T Consensus 235 ~~g~ 238 (409)
T TIGR02079 235 RVGD 238 (409)
T ss_pred CCcH
Confidence 6554
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway. |
| >PRK06815 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=345.52 Aligned_cols=225 Identities=21% Similarity=0.206 Sum_probs=199.0
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChH
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNT 89 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~ 89 (251)
+++|..+++++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.+... ...+|++|+|||
T Consensus 4 ~~~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~ 79 (317)
T PRK06815 4 FDAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNH 79 (317)
T ss_pred HHHHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChH
Confidence 6789999999999999999999999998889999999999999999999999999987543321 223999999999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
|+|+|++|+++|++|+||||..+++.|++.++.+||+|+.+++ +++++...+++++++. +.+|++||+|+.+++ ||
T Consensus 80 g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~ 155 (317)
T PRK06815 80 GQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQVIA-GQ 155 (317)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhhhc-ch
Confidence 9999999999999999999999999999999999999999997 4788888888888875 889999999999885 99
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CC-----CCceeecccCCc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG----GQ-----PGRLLFFLFFLF 240 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~----~~-----~~~~~i~g~g~~ 240 (251)
.++++||++|++ .+|+||+|+|+||+++|++.+|++.+|++||+||||++|+++.. +. ..++.++|++.+
T Consensus 156 ~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~ 234 (317)
T PRK06815 156 GTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGG 234 (317)
T ss_pred hHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccC
Confidence 999999999995 69999999999999999999999999999999999999988753 22 223466777555
Q ss_pred ccc
Q 025563 241 FFC 243 (251)
Q Consensus 241 ~~~ 243 (251)
..|
T Consensus 235 ~~~ 237 (317)
T PRK06815 235 VEP 237 (317)
T ss_pred Ccc
Confidence 443
|
|
| >cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=342.75 Aligned_cols=207 Identities=27% Similarity=0.343 Sum_probs=193.0
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChH
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNT 89 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~ 89 (251)
+++|..+++.|.+.+++|||+++++|++.+|.+||+|+|++||+||||||.+.+++.++.+.+. .. .||++|+|||
T Consensus 1 ~~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~---~~-~iv~~ssGN~ 76 (304)
T cd01562 1 LEDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER---AK-GVVAASAGNH 76 (304)
T ss_pred ChHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc---CC-cEEEECCCHH
Confidence 4689999999999999999999999998888999999999999999999999999999887762 13 3999999999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
|+|+|++|+++|++|++|+|++.++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++|++|+.+++ ||
T Consensus 77 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~~~-g~ 152 (304)
T cd01562 77 AQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDVIA-GQ 152 (304)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchhc-cH
Confidence 9999999999999999999999999999999999999999997 4889999999999886 889999999999985 99
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
.++++||++|++ .||+||+|+||||+++|++++|++.++++||++|||.+++++.
T Consensus 153 ~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~ 207 (304)
T cd01562 153 GTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMA 207 (304)
T ss_pred HHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 999999999996 4999999999999999999999999999999999999998764
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. |
| >cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=343.04 Aligned_cols=215 Identities=23% Similarity=0.261 Sum_probs=189.6
Q ss_pred CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEE
Q 025563 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLI 105 (251)
Q Consensus 26 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ 105 (251)
+|||++++++++.+|++||+|+|++||+||||+|++.+++.++.++|. .++.+ ||++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~~~-vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NECVH-VVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccCCe-EEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998888999999999999999999999999999999885 23344 9999999999999999999999999
Q ss_pred EEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC--C
Q 025563 106 IVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG--D 183 (251)
Q Consensus 106 ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~--~ 183 (251)
||||+.+++.|++.++.+||+|+.+++. .++++.+.+++++++.++++|++||+|+.+++ ||.++++||++|++. .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIWE-GHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhhc-cccHHHHHHHHHccccCC
Confidence 9999999999999999999999999874 26777777888887765889999999999996 999999999999975 5
Q ss_pred CCEEEEecCchhHHHHHHHHHHhhC-CCcEEEEEeCCCCccccC----CCC-----CceeecccCCccccc
Q 025563 184 VDILVAGIGTGGTVTGSGRFLKEKN-PNIKVYGVEPTESAMLNG----GQP-----GRLLFFLFFLFFFCF 244 (251)
Q Consensus 184 ~d~vv~~vGtGg~~~Gi~~~~~~~~-~~~~vigVep~~s~~~~~----~~~-----~~~~i~g~g~~~~~~ 244 (251)
||+||+|+|+||+++|++++|++.+ +++||++|||++|+++.. +.+ .+....|||..+++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~ 227 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSS 227 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCH
Confidence 9999999999999999999999996 999999999999987753 221 234555888876654
|
|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-48 Score=358.78 Aligned_cols=199 Identities=27% Similarity=0.371 Sum_probs=185.3
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
++...+.+|||+++++|++.+|++||+|+|++||+||||+|+|.+.+..+.+... .. .||++|+||||+++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~-~~---GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL-AR---GVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh-cC---cEEEECCCHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999987653322 12 3999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||..++..|++.++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+++ ||.|++.||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~via-GqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDVIA-GQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999986 6899999999999887 889999999999995 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|++..+|+||+|+|+||+++|++.++|+.+|++|||||||++|+++.
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~ 228 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQ 228 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhh
Confidence 99656999999999999999999999999999999999999998875
|
|
| >cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=348.54 Aligned_cols=213 Identities=19% Similarity=0.249 Sum_probs=191.7
Q ss_pred chhhHHHHHHHhhcc----------------cCCCcceecccccccCC--------ceEEEEeCCCCC-CCchhhHHHHH
Q 025563 9 DNHHKRAIKKDATQL----------------IGNTPMVYLNNVVDGCV--------ARIAAKLEMMEP-CCSVKDRIALS 63 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~----------------~~~TPl~~~~~l~~~~g--------~~i~~K~E~~~p-tGS~K~R~a~~ 63 (251)
++++|..+.+++... +++|||+++++|++.+| .+||+|+|++|| +||||||++.+
T Consensus 19 ~~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~ 98 (404)
T cd06447 19 SREDIFDAEARLKRFAPYIAKVFPETAASHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIY 98 (404)
T ss_pred CHHHHHHHHHHHhhcchhhhhhCccccccCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHH
Confidence 477899999999888 99999999999987654 799999999999 99999999999
Q ss_pred HHHH-----HHHcCCCCCCC----------------eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH
Q 025563 64 MIKD-----AEEKGLITPGK----------------SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA 122 (251)
Q Consensus 64 ~l~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~ 122 (251)
++.. +.+.|.+.+|. .+||++|+||||.++|++|+.+|++|+||||+++++.|++.++.
T Consensus 99 ~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira 178 (404)
T cd06447 99 EVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRS 178 (404)
T ss_pred HHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH
Confidence 9864 67788877765 35999999999999999999999999999999999999999999
Q ss_pred cCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC---C-----CCEEEEecCch
Q 025563 123 LGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG---D-----VDILVAGIGTG 194 (251)
Q Consensus 123 ~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~---~-----~d~vv~~vGtG 194 (251)
+||+|+.+++ +++++.+.++++++++++.+|+++++++..+ +||.|+++||++|+++ + ||+||+|+|+|
T Consensus 179 ~GAeVv~v~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~G 255 (404)
T cd06447 179 KGVTVVEYET--DYSKAVEEGRKQAAADPMCYFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVG 255 (404)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHHHCCCeEeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCcc
Confidence 9999999986 6899999999999887678899997666666 5999999999999952 3 55899999999
Q ss_pred hHHHHHHHHHHhh-CCCcEEEEEeCCCCccc
Q 025563 195 GTVTGSGRFLKEK-NPNIKVYGVEPTESAML 224 (251)
Q Consensus 195 g~~~Gi~~~~~~~-~~~~~vigVep~~s~~~ 224 (251)
|+++|++++||+. .|+++|++|||++++++
T Consensus 256 Gli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 256 GAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 9999999999997 78999999999999876
|
D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids. |
| >PRK02991 D-serine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=349.22 Aligned_cols=220 Identities=19% Similarity=0.241 Sum_probs=195.5
Q ss_pred ccccccchhhHHHHHHHhhcc----------------cCCCcceecccccccCC--------ceEEEEeCCCCC-CCchh
Q 025563 3 LEASMEDNHHKRAIKKDATQL----------------IGNTPMVYLNNVVDGCV--------ARIAAKLEMMEP-CCSVK 57 (251)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~----------------~~~TPl~~~~~l~~~~g--------~~i~~K~E~~~p-tGS~K 57 (251)
++..+.+++++..++.++... +++|||++++.+++.+| .+||+|+|++|| |||||
T Consensus 36 ~~~~~~~~~di~~A~~~i~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK 115 (441)
T PRK02991 36 LPYVGLTEADVQDAEARLKRFAPYLAKAFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIK 115 (441)
T ss_pred cccCCCCHHHHHHHHHHHHhhhhhhhhhCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChH
Confidence 345566788999999999977 89999999999987665 699999999999 99999
Q ss_pred hHHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHH
Q 025563 58 DRIALSMIKD-----AEEKGLITPGK----------------SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMER 116 (251)
Q Consensus 58 ~R~a~~~l~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~ 116 (251)
+|++.+++.. +.++|.+.++. .+||++|+||||.|+|++|+++|++|+||||+++++.|
T Consensus 116 ~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K 195 (441)
T PRK02991 116 ARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWK 195 (441)
T ss_pred HHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 9999999875 45677665553 35999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC--------CCCEEE
Q 025563 117 RIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG--------DVDILV 188 (251)
Q Consensus 117 ~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~--------~~d~vv 188 (251)
++.++.+||+|+.+++ +|+++.+.++++++++++.+|+++++++..+ +||.|+++||++|+.+ .||+||
T Consensus 196 ~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~Vv 272 (441)
T PRK02991 196 KDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNCYFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVY 272 (441)
T ss_pred HHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCeEeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEE
Confidence 9999999999999997 6899999999998887678999999888887 5999999999999952 267999
Q ss_pred EecCchhHHHHHHHHHHhh-CCCcEEEEEeCCCCcccc
Q 025563 189 AGIGTGGTVTGSGRFLKEK-NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 189 ~~vGtGg~~~Gi~~~~~~~-~~~~~vigVep~~s~~~~ 225 (251)
+|+|+||+++|++.+|++. +|++|||+|||++|+++.
T Consensus 273 vpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~ 310 (441)
T PRK02991 273 LPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCML 310 (441)
T ss_pred EEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHH
Confidence 9999999999999999997 688999999999998763
|
|
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=346.95 Aligned_cols=190 Identities=28% Similarity=0.395 Sum_probs=178.8
Q ss_pred CcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEE
Q 025563 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLII 106 (251)
Q Consensus 27 TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~i 106 (251)
|||+++++|++..|++||+|+|++|||||||+|+|.+++..+.++++. ..||++|+||||+++|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 899999999998999999999999999999999999999999887753 2499999999999999999999999999
Q ss_pred EecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCE
Q 025563 107 VMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186 (251)
Q Consensus 107 vvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~ 186 (251)
|||+.++..|++.++.+||+|+.++. +++++++.+++++++. +++|++||+|+.+++ ||.|++.||++|++ ++|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFVMA-GQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhhhh-hhHHHHHHHHHhCC-CCCE
Confidence 99999999999999999999999976 6899999999998886 889999999999984 99999999999994 7999
Q ss_pred EEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 187 LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 187 vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
||+|+|+||+++|++.++|+.+|++||+||||++|+++.
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~ 190 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMY 190 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 999999999999999999999999999999999998764
|
A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes. |
| >TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=344.02 Aligned_cols=233 Identities=19% Similarity=0.190 Sum_probs=200.6
Q ss_pred chhhHHHHHHHhhc----------------ccCCCcceecccccccC--------CceEEEEeCCCCC-CCchhhHHHHH
Q 025563 9 DNHHKRAIKKDATQ----------------LIGNTPMVYLNNVVDGC--------VARIAAKLEMMEP-CCSVKDRIALS 63 (251)
Q Consensus 9 ~~~~~~~~~~~v~~----------------~~~~TPl~~~~~l~~~~--------g~~i~~K~E~~~p-tGS~K~R~a~~ 63 (251)
++++|..+..++.. .+++|||++++++++.+ +.+||+|+|++|| +||||+|++.+
T Consensus 37 ~~~~i~~a~~~~~~~~~~~~~~fp~~~~~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~ 116 (431)
T TIGR02035 37 KAQEVAEAEARLQRFAPYIAKVFPETAATGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIY 116 (431)
T ss_pred CHHHHHHHHHHHHhhhhhHHHhCccccccCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHH
Confidence 57788888888888 99999999999998744 5799999999999 99999999999
Q ss_pred HHHH-----HHHcCCCCCCC----------------eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH
Q 025563 64 MIKD-----AEEKGLITPGK----------------SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA 122 (251)
Q Consensus 64 ~l~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~ 122 (251)
++.. +++.|.+.++. .+||++|+||||.++|++|+.+|++|+||||++++..|++.++.
T Consensus 117 ~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~ 196 (431)
T TIGR02035 117 EVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRS 196 (431)
T ss_pred HHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence 9875 66788876653 35999999999999999999999999999999999999999999
Q ss_pred cCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC--------CCCEEEEecCch
Q 025563 123 LGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG--------DVDILVAGIGTG 194 (251)
Q Consensus 123 ~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~--------~~d~vv~~vGtG 194 (251)
+||+|+.+++ +|+++.+.+++++++.++.||+++. |+.++.+||.|+++||++|+.+ .||+|++|+|+|
T Consensus 197 ~GAeVv~~~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~G 273 (431)
T TIGR02035 197 KGVTVVEYES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVG 273 (431)
T ss_pred cCCEEEEECC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcC
Confidence 9999999997 6899999999999887677888874 5555557999999999999952 477999999999
Q ss_pred hHHHHHHHHHHhh-CCCcEEEEEeCCCCcccc----CCC-----------CCceeecccCCccccc
Q 025563 195 GTVTGSGRFLKEK-NPNIKVYGVEPTESAMLN----GGQ-----------PGRLLFFLFFLFFFCF 244 (251)
Q Consensus 195 g~~~Gi~~~~~~~-~~~~~vigVep~~s~~~~----~~~-----------~~~~~i~g~g~~~~~~ 244 (251)
|+++|++.+||+. +|++|||+|||++|+++. .+. .+.+..+||+.+..+.
T Consensus 274 Gli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~ 339 (431)
T TIGR02035 274 GGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSG 339 (431)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcch
Confidence 9999999999997 889999999999998753 122 2245666777665443
|
This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine. |
| >PRK08813 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=336.27 Aligned_cols=213 Identities=23% Similarity=0.258 Sum_probs=190.8
Q ss_pred cchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccC
Q 025563 8 EDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGG 87 (251)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssG 87 (251)
.++++|..+++++...+.+|||++++.+ +||+|+|++|||||||+|++.+++..+.+.+..+ .||++|+|
T Consensus 21 ~~~~~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~----~VV~aSsG 90 (349)
T PRK08813 21 VSVADVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDER----PVICASAG 90 (349)
T ss_pred CCHHHHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCC----eEEEECCC
Confidence 3578999999999999999999998765 4999999999999999999999999999888632 39999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHH
Q 025563 88 NTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKI 167 (251)
Q Consensus 88 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 167 (251)
|||.|+|++|+++|++|+||||.+.++.|++.++.+||+|+.+++ +|+++.+.+++++++. +++|+++|+|+.+++
T Consensus 91 N~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i~- 166 (349)
T PRK08813 91 NHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVIA- 166 (349)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHHH-
Confidence 999999999999999999999999999999999999999999976 6899999999999886 899999999999996
Q ss_pred HHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC---CC-----CCceeecccCC
Q 025563 168 HYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG---GQ-----PGRLLFFLFFL 239 (251)
Q Consensus 168 g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~---~~-----~~~~~i~g~g~ 239 (251)
||.|+++||++| .||+||+|+|+||+++|++.+||+ +.+||+||||++|+++.. +. +.++..+|++.
T Consensus 167 G~~Tig~EI~e~---~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~ 241 (349)
T PRK08813 167 GQGTVGIELAAH---APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKV 241 (349)
T ss_pred HHHHHHHHHHcC---CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceeccccc
Confidence 999999999987 379999999999999999999995 469999999999987531 21 22456677764
|
|
| >PRK06352 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=342.77 Aligned_cols=216 Identities=24% Similarity=0.307 Sum_probs=191.6
Q ss_pred cccccchhhHHHHHH---HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 4 EASMEDNHHKRAIKK---DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~---~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
+-.|+++.+..++.+ +++..+|+|||+++++|++.+|++||+|+|++||+||||||++.+++.++.++|. + +
T Consensus 3 ~~~~~ry~~~lp~~~~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~-~ 77 (351)
T PRK06352 3 KGLLEKYKEYLPVTDKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA----E-A 77 (351)
T ss_pred CchHHHHHHhCCCCCCcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC----C-E
Confidence 345666666665544 4778999999999999988888999999999999999999999999999999884 3 4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 159 (251)
||++|+||||+|+|++|+++|++|+||||+. .+..|+++++.+||+|+.+++ +++++.+.+++++++. ++++++ +
T Consensus 78 vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~ 153 (351)
T PRK06352 78 VICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-S 153 (351)
T ss_pred EEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-C
Confidence 9999999999999999999999999999997 589999999999999999987 5888999999998875 666666 4
Q ss_pred CCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCC-----cEEEEEeCCCCccccCCCC
Q 025563 160 ENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPN-----IKVYGVEPTESAMLNGGQP 229 (251)
Q Consensus 160 ~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~-----~~vigVep~~s~~~~~~~~ 229 (251)
.|+.+++ ||.++++||++|++..||+||+|+|+||+++|++++|++.+++ +|||+|||++|+++..+.+
T Consensus 154 ~n~~~~~-G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~ 227 (351)
T PRK06352 154 VNPYRLE-GQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKP 227 (351)
T ss_pred CCcccee-eHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCC
Confidence 5999996 9999999999999767999999999999999999999998876 8999999999987765544
|
|
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-47 Score=354.52 Aligned_cols=199 Identities=22% Similarity=0.370 Sum_probs=184.9
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
++...+.+|||+++++|++.+|++||+|+|++||+||||+|++.+.+..+.+.. ..+| ||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~~~G---VV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-LDKG---VICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-CCCC---EEEECCCHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999875442 2233 999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||+.++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.++. ||.|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~via-GqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDVIA-GQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999986 5899999999998886 789999999999995 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|+...+|+||+|+|+||+++|++.++|+.+|++|||||||++++++.
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~ 300 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMA 300 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 99656999999999999999999999999999999999999998875
|
|
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=350.92 Aligned_cols=200 Identities=27% Similarity=0.365 Sum_probs=185.2
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
++.+.+++|||+++++|++.+|.+||+|+|++||+||||+|+|.+++..+..... ...||++|+||||+++|++|+
T Consensus 10 ~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa~ 85 (499)
T TIGR01124 10 RVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSAA 85 (499)
T ss_pred HhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHHH
Confidence 7889999999999999999899999999999999999999999999988643322 224999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||+.++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.++. ||.|+|.||++
T Consensus 86 ~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i~-G~gtig~EI~~ 161 (499)
T TIGR01124 86 RLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLVIA-GQGTLALEILR 161 (499)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHHH-hhHHHHHHHHH
Confidence 9999999999999999999999999999999975 6899999999999886 789999999999995 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG 226 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~ 226 (251)
|+..++|+||+|+|+||+++|++.++|+.+|++|||||||++|+++..
T Consensus 162 q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~ 209 (499)
T TIGR01124 162 QVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQ 209 (499)
T ss_pred hCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 996679999999999999999999999999999999999999988753
|
Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain. |
| >PRK08197 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=344.19 Aligned_cols=212 Identities=24% Similarity=0.230 Sum_probs=192.3
Q ss_pred ccccchhhHHHHHH---HhhcccCCCcceecccccccCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 5 ASMEDNHHKRAIKK---DATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 5 ~~~~~~~~~~~~~~---~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
..|+++.+.+++.. .++..+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++..+.+.|. + +
T Consensus 55 ~~~~ry~~~lp~~~~~~~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~-~ 129 (394)
T PRK08197 55 ANLWRYHELLPVRDPEHIVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV----K-H 129 (394)
T ss_pred cchhcchhhCCCCCCCCCCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC----C-E
Confidence 45677776666633 38889999999999999988884 99999999999999999999999999998885 3 4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFE 160 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 160 (251)
||++|+||||+|+|++|+++|++|+||||.++++.|+++++.+||+|+.+++ +++++.+.+++.+++. ++|+++++.
T Consensus 130 vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~ 206 (394)
T PRK08197 130 LAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLK 206 (394)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCC
Confidence 9999999999999999999999999999999999999999999999999997 5788888898888876 799999999
Q ss_pred CCchHHHHHhhHHHHHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhh-------CCCcEEEEEeCCCCcccc
Q 025563 161 NPANPKIHYETTGPEIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEK-------NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 161 n~~~~~~g~~t~~~EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~-------~~~~~vigVep~~s~~~~ 225 (251)
||.+++ |+.|+++||++|++. .||+||+|+|+|++++|++++|++. ++.+||++|||++|+++.
T Consensus 207 np~~ie-G~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~ 278 (394)
T PRK08197 207 EPYRIE-GKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIV 278 (394)
T ss_pred Cccchh-cHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHH
Confidence 999997 999999999999975 4999999999999999999999987 378999999999998764
|
|
| >PRK07591 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=344.34 Aligned_cols=213 Identities=18% Similarity=0.202 Sum_probs=193.5
Q ss_pred ccccchhhHHHHHH--HhhcccCCCcceecccccccCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEE
Q 025563 5 ASMEDNHHKRAIKK--DATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81 (251)
Q Consensus 5 ~~~~~~~~~~~~~~--~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~v 81 (251)
.+++++.+.+++.. ++++.+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++..|.+.|. + .|
T Consensus 66 ~~~wry~~~lp~~~~~~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~----~-~v 140 (421)
T PRK07591 66 KSIWRYRDLLPVPADNPVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF----T-TV 140 (421)
T ss_pred cchhcchhhCccccCCCCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC----C-EE
Confidence 45677777766632 48889999999999999988885 99999999999999999999999999999885 3 38
Q ss_pred EEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCC
Q 025563 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFEN 161 (251)
Q Consensus 82 v~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n 161 (251)
+++|+||||+|+|++|+++|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.++++++++++++|++++.|
T Consensus 141 v~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~ 218 (421)
T PRK07591 141 ACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLR 218 (421)
T ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999997 588999999999888768899999889
Q ss_pred CchHHHHHhhHHHHHhhhhCCC-CCEEEEecCchhHHHHHHHHHHhh-------CCCcEEEEEeCCCCcccc
Q 025563 162 PANPKIHYETTGPEIWKDSGGD-VDILVAGIGTGGTVTGSGRFLKEK-------NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 162 ~~~~~~g~~t~~~EI~~q~~~~-~d~vv~~vGtGg~~~Gi~~~~~~~-------~~~~~vigVep~~s~~~~ 225 (251)
|..++ |+.|+++||++|++.. ||+||+|+|+||+++|++++|++. ++.+||++|||++|+++.
T Consensus 219 p~~ie-G~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~ 289 (421)
T PRK07591 219 PYYAE-GSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIA 289 (421)
T ss_pred ccccc-chHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHH
Confidence 99986 9999999999999654 999999999999999999999997 578999999999987765
|
|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=349.19 Aligned_cols=200 Identities=27% Similarity=0.377 Sum_probs=185.4
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
.++...+.+|||+++++|++.+|.+||+|+|++||+||||+|+|.+++..+.+... ...||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 38889999999999999999899999999999999999999999999988653321 22499999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHh
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIW 177 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~ 177 (251)
+++|++|+||||+.++..|++.++.+||+|+.++. +|+++.+.+.+++++. +.+|++||+|+.+++ |+.|++.||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i~-G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDVIA-GQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHHHH-hHHHHHHHHH
Confidence 99999999999999999999999999999999985 6899999999998885 889999999999995 9999999999
Q ss_pred hhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 178 KDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 178 ~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+|++..+|+||+|+|+||+++|++.++|..+|++||+||||++|+++.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~ 211 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLK 211 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 999655999999999999999999999999999999999999999875
|
|
| >PRK06381 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=330.92 Aligned_cols=195 Identities=23% Similarity=0.314 Sum_probs=179.1
Q ss_pred cccCCCcceecccccccCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHC
Q 025563 22 QLIGNTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALR 100 (251)
Q Consensus 22 ~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 100 (251)
..+++|||+++++|++.+| .+||+|+|++||+||||+|++.+++.++.++|. + +||++|+||||+|+|++|+.+
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~-~lv~aSsGN~g~alA~~aa~~ 85 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY----S-GITVGTCGNYGASIAYFARLY 85 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC----C-EEEEeCCcHHHHHHHHHHHHc
Confidence 4699999999999998888 599999999999999999999999999999885 3 499999999999999999999
Q ss_pred CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCC-CC-chHHHHHhhHHHHHhh
Q 025563 101 GYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFE-NP-ANPKIHYETTGPEIWK 178 (251)
Q Consensus 101 G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-n~-~~~~~g~~t~~~EI~~ 178 (251)
|++|+||||...+..|+++++.+||+|+.+++ +++++.+.+++++++. ++|++++++ |+ .+++ ||.++++||++
T Consensus 86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~-G~~t~a~Ei~~ 161 (319)
T PRK06381 86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDIE-AYSAIAYEIYE 161 (319)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHhh-hHHHHHHHHHH
Confidence 99999999999999999999999999999997 4788989999988875 788888886 76 4675 99999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhh------CCCcEEEEEeCCCCcccc
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEK------NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~------~~~~~vigVep~~s~~~~ 225 (251)
|++..||+||+|+|+||+++|++++|++. .|.+||++|||.+++++.
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~ 214 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIV 214 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHH
Confidence 99767999999999999999999999998 789999999999987653
|
|
| >KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=329.24 Aligned_cols=208 Identities=22% Similarity=0.251 Sum_probs=195.0
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChH
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNT 89 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~ 89 (251)
+.++...+.+++..+..|||.+.-.|++.+|.++|+|+|++||+||||.|++.+++...-++++ ..+|+++|+|||
T Consensus 50 ~~~~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNh 125 (457)
T KOG1250|consen 50 FYDISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNH 125 (457)
T ss_pred cchhhhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccH
Confidence 5677888889999999999999989999999999999999999999999999999998766654 234999999999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
|.|+|++|+++|+|++||||..++.-|++.++.+||+|+..+. +++++...|.++++++ ++.|+++||+|+.++ |+
T Consensus 126 a~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I~a-Gq 201 (457)
T KOG1250|consen 126 AQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDIWA-GQ 201 (457)
T ss_pred HHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchhhc-Cc
Confidence 9999999999999999999999999999999999999999987 6899999999999998 999999999999995 99
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+|++.||.+|++..+++|+||||+||+++||+.++++..|+++|||||+++|.++.
T Consensus 202 gTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~ 257 (457)
T KOG1250|consen 202 GTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFN 257 (457)
T ss_pred chHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHH
Confidence 99999999999766669999999999999999999999999999999999999876
|
|
| >PRK06721 threonine synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=333.16 Aligned_cols=214 Identities=25% Similarity=0.308 Sum_probs=188.0
Q ss_pred cccccchhhHHHHH---HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 4 EASMEDNHHKRAIK---KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 4 ~~~~~~~~~~~~~~---~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
+..|+++.+.+++. .++++.+|+|||++++++++..|.+||+|+|++||+||||+|++.+++.++.++|. . +
T Consensus 3 ~~~~~ry~~~lp~~~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~-~ 77 (352)
T PRK06721 3 KGLLNQYASYLPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS----E-A 77 (352)
T ss_pred cchHHHHHHhCCCCCCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----C-E
Confidence 45677777777763 35788999999999999988888899999999999999999999999999998884 3 4
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 159 (251)
||++|+||||+|+|++|+++|++|+||||+.. ++.|+++++.+||+|+.+++ +++++.+.+++++++. ++++++ +
T Consensus 78 vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~ 153 (352)
T PRK06721 78 IICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-S 153 (352)
T ss_pred EEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-C
Confidence 99999999999999999999999999999874 78899999999999999986 6888999999998886 667665 5
Q ss_pred CCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHH----HHHHhhC-CCcEEEEEeCCCCccccCC
Q 025563 160 ENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSG----RFLKEKN-PNIKVYGVEPTESAMLNGG 227 (251)
Q Consensus 160 ~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~----~~~~~~~-~~~~vigVep~~s~~~~~~ 227 (251)
.|+.+++ ||.++++||++|++..||+||+|+|+||+++|++ +++|+.+ |++||++|||++|+++..+
T Consensus 154 ~n~~~~~-G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g 225 (352)
T PRK06721 154 VNPYRIE-GQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKG 225 (352)
T ss_pred CCchhhh-hhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhC
Confidence 6899886 9999999999999767999999999999999854 4555554 8899999999999887654
|
|
| >PRK07409 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-46 Score=333.90 Aligned_cols=215 Identities=24% Similarity=0.272 Sum_probs=188.8
Q ss_pred ccccchhhHHHHH---HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEE
Q 025563 5 ASMEDNHHKRAIK---KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81 (251)
Q Consensus 5 ~~~~~~~~~~~~~---~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~v 81 (251)
..++++.+.+++. .+++..+|+|||+++++|++..|.+||+|+|++||+||||||++.+++..+.++|. . +|
T Consensus 7 ~~~~~~~~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~-~i 81 (353)
T PRK07409 7 GLIEAYRDRLPVTDDTPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA----K-AV 81 (353)
T ss_pred cchHHHHHhCCCCCccCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----C-EE
Confidence 3445555665543 24788999999999999988888899999999999999999999999999998875 3 49
Q ss_pred EEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCC
Q 025563 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFE 160 (251)
Q Consensus 82 v~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 160 (251)
|++|+||||+|+|++|+.+|++|+||||+. .+..|+++++.+||+|+.+++ +++++.+.++++++++ +++++++ .
T Consensus 82 v~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~ 157 (353)
T PRK07409 82 ICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-V 157 (353)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-C
Confidence 999999999999999999999999999997 588999999999999999997 5889999999998877 4777775 5
Q ss_pred CCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCccccCCCC
Q 025563 161 NPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLNGGQP 229 (251)
Q Consensus 161 n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~~~~~ 229 (251)
|+.+++ ||.++++||++|+.+.||+||+|+|+||+++|++.+|++..+ .+||++|||++++++..+.+
T Consensus 158 n~~~~~-g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~ 231 (353)
T PRK07409 158 NPYRIE-GQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEP 231 (353)
T ss_pred Cchhhh-hHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCc
Confidence 999985 999999999999976799999999999999999999998743 49999999999988765543
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-46 Score=342.20 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=188.9
Q ss_pred ccccchhhHHHHHH-HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 025563 5 ASMEDNHHKRAIKK-DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIE 83 (251)
Q Consensus 5 ~~~~~~~~~~~~~~-~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~ 83 (251)
++|+++.+.+++.. .++..+|+|||++++ +++.+|.+||+|+|++|||||||||++.+++.+|++.|. . .|++
T Consensus 44 ~~~wry~~~lp~~~~~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~----~-~vv~ 117 (442)
T PRK05638 44 PGVWRYKELLPQVKKIISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA----N-GFIV 117 (442)
T ss_pred CChhhhhhhCCCcCCccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC----C-EEEE
Confidence 56777777776643 378899999999984 666678899999999999999999999999999998864 3 4999
Q ss_pred eccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCc
Q 025563 84 TTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPA 163 (251)
Q Consensus 84 ~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~ 163 (251)
+|+||||+|+|++|+++|++|+||||.++++.|+++++.+||+|+.+++ +++++.+.+++++++. ++|++++++||.
T Consensus 118 aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~ 194 (442)
T PRK05638 118 ASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNII 194 (442)
T ss_pred eCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChh
Confidence 9999999999999999999999999999999999999999999999986 6899999999988875 899999999999
Q ss_pred hHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCcccc
Q 025563 164 NPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLN 225 (251)
Q Consensus 164 ~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~ 225 (251)
+++ ||.|+++||++|++ ||+||+|+|+||+++|++++|++..+ .+||++|||++|+++.
T Consensus 195 ~~e-G~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~ 259 (442)
T PRK05638 195 GLE-GQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIA 259 (442)
T ss_pred Hhh-hHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHH
Confidence 997 99999999999995 99999999999999999999999765 3799999999998764
|
|
| >PRK06260 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=338.50 Aligned_cols=211 Identities=24% Similarity=0.230 Sum_probs=191.5
Q ss_pred ccccchhhHHHH-HHHhhcccCCCcceecccccccCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEE
Q 025563 5 ASMEDNHHKRAI-KKDATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82 (251)
Q Consensus 5 ~~~~~~~~~~~~-~~~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv 82 (251)
.+|+++.+.+++ ...+++.+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++..+.++|. + +||
T Consensus 45 ~~~wry~~~lp~~~~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~----~-~vv 119 (397)
T PRK06260 45 RGVWRYKELLPVKKKIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV----K-TVA 119 (397)
T ss_pred cceeeehhhcCCCCCcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC----C-EEE
Confidence 567887777777 4468899999999999999988887 99999999999999999999999999999885 3 499
Q ss_pred EeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCC
Q 025563 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFEN 161 (251)
Q Consensus 83 ~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n 161 (251)
++|+||||+|+|++|+++|++|+||||++ .+..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ |
T Consensus 120 ~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-n 195 (397)
T PRK06260 120 CASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-N 195 (397)
T ss_pred EeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-C
Confidence 99999999999999999999999999997 789999999999999999987 5889999999998876 78889887 8
Q ss_pred CchHHHHHhhHHHHHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhhC------CCcEEEEEeCCCCcccc
Q 025563 162 PANPKIHYETTGPEIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKN------PNIKVYGVEPTESAMLN 225 (251)
Q Consensus 162 ~~~~~~g~~t~~~EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~------~~~~vigVep~~s~~~~ 225 (251)
+.+++ ||.|+++||++|++. .||+||+|+|+||+++|++++|++.. +.+||++|||++|+++.
T Consensus 196 p~~~~-G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~ 265 (397)
T PRK06260 196 PFRLE-GQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIV 265 (397)
T ss_pred chhhc-chhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHH
Confidence 99996 999999999999976 69999999999999999999999875 33899999999998763
|
|
| >cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=328.67 Aligned_cols=198 Identities=26% Similarity=0.274 Sum_probs=182.3
Q ss_pred HHhhcccCCCcceecccccccCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFI 96 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 96 (251)
+++...+++|||+++++|++..| .+||+|+|++||+||||+|++.+++.++.++|. . +||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~-~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV----K-AVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC----C-EEEEeCCCHHHHHHHHH
Confidence 46888999999999999988776 699999999999999999999999999998873 3 49999999999999999
Q ss_pred HHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHH
Q 025563 97 AALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEI 176 (251)
Q Consensus 97 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI 176 (251)
|+.+|++|++|||+++++.++++++.+||+|+.++. +++++.+.+++++++. .+|++|++|+.+++ ||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~~~-g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYRLE-GQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcceec-chhhhHHHH
Confidence 999999999999999999999999999999999987 5788999999998875 78999999999996 999999999
Q ss_pred hhhhCC-CCCEEEEecCchhHHHHHHHHHHhhC------CCcEEEEEeCCCCcccc
Q 025563 177 WKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKN------PNIKVYGVEPTESAMLN 225 (251)
Q Consensus 177 ~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~------~~~~vigVep~~s~~~~ 225 (251)
++|+.. .+|+||+|+|+||+++|++.+|++.. +++||+||||++++++.
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~ 219 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIV 219 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHH
Confidence 999963 69999999999999999999999875 57999999999987664
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. |
| >PRK08329 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=330.45 Aligned_cols=223 Identities=20% Similarity=0.175 Sum_probs=194.2
Q ss_pred ccccchhhHHHHHH--HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEE
Q 025563 5 ASMEDNHHKRAIKK--DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82 (251)
Q Consensus 5 ~~~~~~~~~~~~~~--~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv 82 (251)
.+|+++.+.+++.+ .++...|.|||+++. .+||+|+|++|||||||||++.+++..+.+.|. + +||
T Consensus 41 ~~~wry~~~lP~~~~~~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~-~vv 108 (347)
T PRK08329 41 LDMRRYIDYLPVDEEFLPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI----N-EVV 108 (347)
T ss_pred cchhhhHHhCCCCCCCCCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC----C-EEE
Confidence 45677666666543 268889999999873 489999999999999999999999999999885 3 499
Q ss_pred EeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCC
Q 025563 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENP 162 (251)
Q Consensus 83 ~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~ 162 (251)
++|+||||+|+|++|+++|++|+||||+++++.|+.+++.+||+|+.+++ +++++.+.+++++++. +.+|++++.||
T Consensus 109 ~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np 185 (347)
T PRK08329 109 IDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNP 185 (347)
T ss_pred EECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCc
Confidence 99999999999999999999999999999999999999999999999987 4677888888888875 77889999999
Q ss_pred chHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhC------CCcEEEEEeCCCCccccC-CCCCceeec
Q 025563 163 ANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKN------PNIKVYGVEPTESAMLNG-GQPGRLLFF 235 (251)
Q Consensus 163 ~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~------~~~~vigVep~~s~~~~~-~~~~~~~i~ 235 (251)
.+++ ||.|+++||++|++ .||+||+|+|+|++++|++++|++.. +.+||++|||++|.++.. ....++..+
T Consensus 186 ~~~e-G~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~ 263 (347)
T PRK08329 186 YFLE-GTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLAD 263 (347)
T ss_pred hhhc-cchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceee
Confidence 9997 99999999999995 79999999999999999999999873 568999999999887753 334567788
Q ss_pred ccCCccccc
Q 025563 236 LFFLFFFCF 244 (251)
Q Consensus 236 g~g~~~~~~ 244 (251)
||+.+..|.
T Consensus 264 gi~i~~~~~ 272 (347)
T PRK08329 264 GIAIPEPPR 272 (347)
T ss_pred eEEeCCCCC
Confidence 888765543
|
|
| >PLN02569 threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=337.84 Aligned_cols=230 Identities=14% Similarity=0.084 Sum_probs=196.9
Q ss_pred cccchhh-HHHHH---HHhhcccCCCcceeccccccc-CCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCe
Q 025563 6 SMEDNHH-KRAIK---KDATQLIGNTPMVYLNNVVDG-CVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKS 79 (251)
Q Consensus 6 ~~~~~~~-~~~~~---~~v~~~~~~TPl~~~~~l~~~-~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~ 79 (251)
.|+++.+ .+++. ..++..+|+|||+++++|++. +|. +||+|+|++|||||||||++..++..+.+.|.......
T Consensus 109 g~wry~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~ 188 (484)
T PLN02569 109 GVWSKKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVV 188 (484)
T ss_pred CccccccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCcc
Confidence 4566665 44442 238889999999999999887 785 99999999999999999999999999988765322123
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQ 158 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 158 (251)
.|+++|+||||.|+|++|+++|++|+||||++ .+..|+.+++.+||+|+.+++ +|+++++.++++++++ ++|++++
T Consensus 189 ~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~ 265 (484)
T PLN02569 189 GVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANS 265 (484)
T ss_pred EEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCC
Confidence 49999999999999999999999999999996 788999999999999999997 6999999999988876 6889998
Q ss_pred CCCCchHHHHHhhHHHHHhhhhCCC-CCEEEEecCchhHHHHHHHHHHhhC------CCcEEEEEeCCCCccccC----C
Q 025563 159 FENPANPKIHYETTGPEIWKDSGGD-VDILVAGIGTGGTVTGSGRFLKEKN------PNIKVYGVEPTESAMLNG----G 227 (251)
Q Consensus 159 ~~n~~~~~~g~~t~~~EI~~q~~~~-~d~vv~~vGtGg~~~Gi~~~~~~~~------~~~~vigVep~~s~~~~~----~ 227 (251)
+ |+.+++ ||.|+++||++|++.. ||+||+|+|+||+++|++++|++.. +.+||++|||++|+++.. +
T Consensus 266 ~-Np~~ie-G~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G 343 (484)
T PLN02569 266 L-NSLRLE-GQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSG 343 (484)
T ss_pred C-CcchhH-hHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcC
Confidence 8 999997 9999999999999754 9999999999999999999999863 458999999999987752 2
Q ss_pred C-------CCceeecccCCc
Q 025563 228 Q-------PGRLLFFLFFLF 240 (251)
Q Consensus 228 ~-------~~~~~i~g~g~~ 240 (251)
. ..++..+||+.+
T Consensus 344 ~~~~~~~~~~~T~A~gi~i~ 363 (484)
T PLN02569 344 WEEFKPVKANPTFASAIQIG 363 (484)
T ss_pred CCccccCCCCCccchhhccC
Confidence 1 245667777766
|
|
| >PRK08206 diaminopropionate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=331.88 Aligned_cols=213 Identities=21% Similarity=0.199 Sum_probs=186.3
Q ss_pred chhhHHHHHHHh--hcccCCCcceecccccccCC-ceEEEEeCCC-CCCCchhhHHHHHHHHHHHH--cCCC--------
Q 025563 9 DNHHKRAIKKDA--TQLIGNTPMVYLNNVVDGCV-ARIAAKLEMM-EPCCSVKDRIALSMIKDAEE--KGLI-------- 74 (251)
Q Consensus 9 ~~~~~~~~~~~v--~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~-~ptGS~K~R~a~~~l~~a~~--~g~~-------- 74 (251)
+++++..+.+++ ...+++|||+++++|++.+| .+||+|+|++ ||+||||+|++.+.+..+.. .+..
T Consensus 25 ~~~~~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~ 104 (399)
T PRK08206 25 SQEEAKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEE 104 (399)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHH
Confidence 367889999999 66999999999999999899 5999999997 59999999999988877653 2210
Q ss_pred ---------CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHH
Q 025563 75 ---------TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEE 145 (251)
Q Consensus 75 ---------~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~ 145 (251)
.++. +|+++|+||||+|+|++|+.+|++|+||||..+++.|+..++.+||+|+.+++ +++++.+.+.+
T Consensus 105 l~~~~~~~~~~~~-~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~ 181 (399)
T PRK08206 105 LTSGEVREKLGDI-TFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQ 181 (399)
T ss_pred hhhhHHHHhccCC-EEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHH
Confidence 0122 39999999999999999999999999999999999999999999999999996 68899999999
Q ss_pred HhhcCCCeEecC-----CCCC-CchHHHHHhhHHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhhC--CCcEEE
Q 025563 146 ILSNTPNGFMFR-----QFEN-PANPKIHYETTGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEKN--PNIKVY 214 (251)
Q Consensus 146 ~~~~~~~~~~~~-----~~~n-~~~~~~g~~t~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~--~~~~vi 214 (251)
++++. +++|++ +|+| +.++.+||.|+++||++|+.+ .||+||+|+|+||+++|++.+|++.+ +.+||+
T Consensus 182 ~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii 260 (399)
T PRK08206 182 EAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFV 260 (399)
T ss_pred HHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEE
Confidence 88876 788886 6765 555557999999999999965 59999999999999999999999884 479999
Q ss_pred EEeCCCCcccc
Q 025563 215 GVEPTESAMLN 225 (251)
Q Consensus 215 gVep~~s~~~~ 225 (251)
+|||++|+++.
T Consensus 261 ~Vep~gs~~l~ 271 (399)
T PRK08206 261 VVEPDQADCLY 271 (399)
T ss_pred EECCCCCchHH
Confidence 99999998874
|
|
| >PRK06450 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=322.26 Aligned_cols=186 Identities=24% Similarity=0.255 Sum_probs=167.5
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
.++..+|+|||++.+ +||+|+|++|||||||||++.+++..+.+.|. + .|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~----~-~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI----K-QISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----C-EEEEECCcHHHHHHHHHHH
Confidence 488899999999864 69999999999999999999999999998874 2 4999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||+++++.|+++++.+||+|+.+++ +++++.+. +++. +.+|++++.||.+++ ||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~ie-G~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQFRD-GIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999997 46665443 4444 778999999999997 99999999999
Q ss_pred hhCC-CCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCcccc
Q 025563 179 DSGG-DVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLN 225 (251)
Q Consensus 179 q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~ 225 (251)
|++. .||+||+|+|+|++++|++++|++..+ .+||++|||++|+++.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~ 243 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLC 243 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHH
Confidence 9963 599999999999999999999999764 3899999999998765
|
|
| >cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=302.96 Aligned_cols=187 Identities=45% Similarity=0.626 Sum_probs=175.5
Q ss_pred CcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEE
Q 025563 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLII 106 (251)
Q Consensus 27 TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~i 106 (251)
|||++++++++..+.+||+|+|+.||+||||+|++.+++..+.+.|.+ ++.. ||++|+||||.|+|++|+++|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~~~-vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PKGV-IIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CCCE-EEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887788999999999999999999999999999998865 3344 99999999999999999999999999
Q ss_pred EecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC-CCC
Q 025563 107 VMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG-DVD 185 (251)
Q Consensus 107 vvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~-~~d 185 (251)
|+|...++.++++++.+||+|+.+++. ++++.+.+++++++.++++|+++|+|+.+++ ||.++++||.+|++. .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999974 8899999999999856899999999999997 899999999999976 599
Q ss_pred EEEEecCchhHHHHHHHHHHhhCCCcEEEEEeC
Q 025563 186 ILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEP 218 (251)
Q Consensus 186 ~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep 218 (251)
+||+|+|+||+++|++.+|++.+|++||++|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 999999999999999999999999999999999
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy |
| >KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=297.74 Aligned_cols=208 Identities=22% Similarity=0.324 Sum_probs=192.9
Q ss_pred cccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEec
Q 025563 6 SMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETT 85 (251)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s 85 (251)
...+++++..+++|+...+..||++.++.+-+..|.++|+|.|++|.+|+||.|+|.+.+..+.+... ...+++.|
T Consensus 5 ~~~t~~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithS 80 (323)
T KOG1251|consen 5 YKITYEDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHS 80 (323)
T ss_pred ecCCHHHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeec
Confidence 34578999999999999999999999999999999999999999999999999999999988763332 12399999
Q ss_pred cChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchH
Q 025563 86 GGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANP 165 (251)
Q Consensus 86 sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~ 165 (251)
|||||.|+|++|+..|+|++|+||++.+..|+..++.||++|+++++. .+++...++++.++. +.+.++||++|..+
T Consensus 81 SGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI 157 (323)
T KOG1251|consen 81 SGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI 157 (323)
T ss_pred CCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee
Confidence 999999999999999999999999999999999999999999999984 467888999999998 89999999999999
Q ss_pred HHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 025563 166 KIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222 (251)
Q Consensus 166 ~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~ 222 (251)
+|+.|++.|+++|+ +.+|++|+|+|+||+++|++.+.+...|+++|++|||++++
T Consensus 158 -aGqgTiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~ 212 (323)
T KOG1251|consen 158 -AGQGTIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAAD 212 (323)
T ss_pred -eccchHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccc
Confidence 59999999999999 58999999999999999999999999999999999999876
|
|
| >PRK12391 tryptophan synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=318.73 Aligned_cols=237 Identities=21% Similarity=0.202 Sum_probs=187.7
Q ss_pred ccccchhhHHHHHHHhhcccCCCcceecccccccCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEE
Q 025563 5 ASMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82 (251)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv 82 (251)
.|.++..+|......++..+++|||+++++|++.+| .+||+|+|++||+||||+|++..++..+.++|. ...++
T Consensus 56 ~~~~~~~~i~~~v~~~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~~vt 131 (427)
T PRK12391 56 VSTERYIDIPEEVREIYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KRLTT 131 (427)
T ss_pred CCcccccCChHHHHHHHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CEEEE
Confidence 344455566666666778889999999999998877 699999999999999999999999999999986 23244
Q ss_pred EeccChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCEEEEeCCCCC----------------hHHHHHHH
Q 025563 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQAGG----------------FEGILRKG 143 (251)
Q Consensus 83 ~~ssGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~v~~~~~----------------~~~~~~~a 143 (251)
++|+||||.|+|++|+.+|++|+||||+. .++.|+.+|+.+||+|+.++...+ ...++..+
T Consensus 132 etgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A 211 (427)
T PRK12391 132 ETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEA 211 (427)
T ss_pred ccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHH
Confidence 56789999999999999999999999974 366889999999999999986311 11245666
Q ss_pred HHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhC---CCCCEEEEecCchhHHHHHHHHHHh---hC-CCcEEEEE
Q 025563 144 EEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSG---GDVDILVAGIGTGGTVTGSGRFLKE---KN-PNIKVYGV 216 (251)
Q Consensus 144 ~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~---~~~d~vv~~vGtGg~~~Gi~~~~~~---~~-~~~~vigV 216 (251)
.+.+++.++.+|+..+... +...||.++++||.+|++ ..||+||+|+|+||+++|++.+|.+ .+ +++||++|
T Consensus 212 ~e~a~~~~~~~y~~~s~~~-~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaV 290 (427)
T PRK12391 212 VEDAAKRPDTKYALGSVLN-HVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAV 290 (427)
T ss_pred HHHHHhCCCcEEEcCCCCc-HHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 6666655465555444333 344699999999999996 3699999999999999999997743 24 88999999
Q ss_pred eCCCCccccCCCC--------C---ceeecccCCccccccc
Q 025563 217 EPTESAMLNGGQP--------G---RLLFFLFFLFFFCFFF 246 (251)
Q Consensus 217 ep~~s~~~~~~~~--------~---~~~i~g~g~~~~~~~~ 246 (251)
||++|++++.+.. + ...+.++|..|+|..+
T Consensus 291 Ep~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~ 331 (427)
T PRK12391 291 EPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPI 331 (427)
T ss_pred eeccchhhccccccccccccccCCccceeEecCCCCCCccc
Confidence 9999998875411 1 2568899999988653
|
|
| >TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=317.49 Aligned_cols=234 Identities=21% Similarity=0.212 Sum_probs=184.9
Q ss_pred cccccchhhHHHHHHHhhccc-CCCcceecccccccCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 4 EASMEDNHHKRAIKKDATQLI-GNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~-~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
|.|.++..+|..........+ ++|||+++++|++.+| ++||+|+|++||+||||+|++..++..+.++|. ...
T Consensus 45 e~~~~r~~~~~~~v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~~ 120 (419)
T TIGR01415 45 EVSGERWIKIPGEVLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KRL 120 (419)
T ss_pred cccHhhHHhhHHHHHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----CeE
Confidence 344455666664333334445 5899999999998877 699999999999999999999999999999985 232
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCC---cHHHHHHHHHcCCEEEEeCCCCChHH------------------H
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIA---SMERRIVLRALGAEVYLADQAGGFEG------------------I 139 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~v~~~~~~~~------------------~ 139 (251)
++++|+||||.|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++.. +++ +
T Consensus 121 vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~a 198 (419)
T TIGR01415 121 VTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIA 198 (419)
T ss_pred EEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHH
Confidence 44578899999999999999999999999843 568899999999999999874 322 2
Q ss_pred HHHHHHHhhcCC-CeEecCCCCCCchHHHHHhhHHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhh----CCCc
Q 025563 140 LRKGEEILSNTP-NGFMFRQFENPANPKIHYETTGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEK----NPNI 211 (251)
Q Consensus 140 ~~~a~~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~----~~~~ 211 (251)
+..+.+.+++++ ..|+.+++.|+ ...||.++|+||++|++. .||+||+|+|+||+++|++.+|.+. .+++
T Consensus 199 i~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~ 276 (419)
T TIGR01415 199 ISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDR 276 (419)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCC
Confidence 455666665544 34566665553 335999999999999964 4999999999999999999988433 3579
Q ss_pred EEEEEeCCCCccccCCCC-----------CceeecccCCcccccc
Q 025563 212 KVYGVEPTESAMLNGGQP-----------GRLLFFLFFLFFFCFF 245 (251)
Q Consensus 212 ~vigVep~~s~~~~~~~~-----------~~~~i~g~g~~~~~~~ 245 (251)
||++|||++|++++.+.. ..+.+.++|..++|..
T Consensus 277 rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~ 321 (419)
T TIGR01415 277 RFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPP 321 (419)
T ss_pred EEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcc
Confidence 999999999998876531 1356789999998864
|
This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found. |
| >KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=294.88 Aligned_cols=225 Identities=39% Similarity=0.579 Sum_probs=195.4
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
-+...+|+|||+++..|++..||+|+.|.|.+||.||.|||.|.++++.|+++|++.+|.. |++.|+||+|.++|..|.
T Consensus 42 Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~~ 120 (391)
T KOG1481|consen 42 GVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVAR 120 (391)
T ss_pred hhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCce-EEecCCCccchhHHHhhh
Confidence 4667899999999999999999999999999999999999999999999999999999976 999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHhhcCC------CeEecCCCCCCchHHHHHh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG--GFEGILRKGEEILSNTP------NGFMFRQFENPANPKIHYE 170 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~n~~~~~~g~~ 170 (251)
.+|++|+|+||.+.+.+|.+.++.+||+|++|++.. +-+.-...|++.+++.+ ..+|.+||+|++|+.+||.
T Consensus 121 a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHye 200 (391)
T KOG1481|consen 121 ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYE 200 (391)
T ss_pred hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhc
Confidence 999999999999999999999999999999997642 22233333433333332 2477899999999999999
Q ss_pred hHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCC-cEEEEEeCCCCccccC-------------C----CCCce
Q 025563 171 TTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPN-IKVYGVEPTESAMLNG-------------G----QPGRL 232 (251)
Q Consensus 171 t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~-~~vigVep~~s~~~~~-------------~----~~~~~ 232 (251)
++|+||+.|.++++|++++.+|||||++|+++++++..+. +.++..+|-||-.++. | .+...
T Consensus 201 tTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dt 280 (391)
T KOG1481|consen 201 TTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDT 280 (391)
T ss_pred CcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcch
Confidence 9999999999999999999999999999999999999876 9999999999954331 1 23466
Q ss_pred eecccCCccccc
Q 025563 233 LFFLFFLFFFCF 244 (251)
Q Consensus 233 ~i~g~g~~~~~~ 244 (251)
..||||.+.+-.
T Consensus 281 i~EGIGinRiT~ 292 (391)
T KOG1481|consen 281 ITEGIGINRITG 292 (391)
T ss_pred hhhccccccccc
Confidence 788999876643
|
|
| >TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=310.74 Aligned_cols=211 Identities=20% Similarity=0.209 Sum_probs=182.0
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCc-eEEEEeCCCCC-CCchhhHHHHHHHHHHHHc----------------
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEP-CCSVKDRIALSMIKDAEEK---------------- 71 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~p-tGS~K~R~a~~~l~~a~~~---------------- 71 (251)
++.+..+++++... .+|||++++.|++.+|. +||+|+|++|+ +||||+|++.+.+..+.+.
T Consensus 7 ~~~~~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~ 85 (376)
T TIGR01747 7 AKLALAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKN 85 (376)
T ss_pred HHHHHHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhh
Confidence 56677888888766 99999999999999994 99999999985 8999999999999887553
Q ss_pred CCCC--CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 72 GLIT--PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 72 g~~~--~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
+.+. .+..+||++|+||||+|+|++|+.+|++|+||||+++++.|+..++.+||+|+.+++ +++++.+.+++++++
T Consensus 86 ~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~ 163 (376)
T TIGR01747 86 DAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQ 163 (376)
T ss_pred hHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHh
Confidence 1111 123459999999999999999999999999999999999999999999999999986 689999999998887
Q ss_pred CCCeEecC-----CCCC--CchHHHHHhhHHHHHhhhhCC----CCCEEEEecCchhHHHHHHHHHHhhC-CC-cEEEEE
Q 025563 150 TPNGFMFR-----QFEN--PANPKIHYETTGPEIWKDSGG----DVDILVAGIGTGGTVTGSGRFLKEKN-PN-IKVYGV 216 (251)
Q Consensus 150 ~~~~~~~~-----~~~n--~~~~~~g~~t~~~EI~~q~~~----~~d~vv~~vGtGg~~~Gi~~~~~~~~-~~-~~vigV 216 (251)
. ++++++ +|+| +..+ .||.|+++||++|+.. .||+||+|+|+||+++|++.++++.. ++ +||++|
T Consensus 164 ~-g~~~~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~V 241 (376)
T TIGR01747 164 H-GWVVVQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVV 241 (376)
T ss_pred c-CcEEeccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 6 678876 4655 5555 5999999999999952 69999999999999999999998764 33 799999
Q ss_pred eCCCCcccc
Q 025563 217 EPTESAMLN 225 (251)
Q Consensus 217 ep~~s~~~~ 225 (251)
||++|+++.
T Consensus 242 ep~ga~~~~ 250 (376)
T TIGR01747 242 EPDKADCLY 250 (376)
T ss_pred eeCCCCHHH
Confidence 999999875
|
This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase). |
| >TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=313.86 Aligned_cols=212 Identities=20% Similarity=0.182 Sum_probs=178.3
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCC-ceEEEEeCCCC-CCCchhhHHHHHHHHHHHH--cCCC-----------
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCV-ARIAAKLEMME-PCCSVKDRIALSMIKDAEE--KGLI----------- 74 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~-ptGS~K~R~a~~~l~~a~~--~g~~----------- 74 (251)
..++..++.++. .+.+|||++++.|++.+| .+||+|+|++| |+||||+|++.+.+..+.+ .|..
T Consensus 26 ~~~~~~~~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~ 104 (396)
T TIGR03528 26 AEKVRAFHQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKS 104 (396)
T ss_pred HHHHHHHHhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhh
Confidence 456666677764 559999999999999999 59999999988 4999999999999987533 2210
Q ss_pred ---C--CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 75 ---T--PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 75 ---~--~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
. ....+||++|+||||+|+|++|+++|++|+||||+++++.|++.++.+||+|+.+++ +++++.+.+++++++
T Consensus 105 ~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~ 182 (396)
T TIGR03528 105 NEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQE 182 (396)
T ss_pred HHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHh
Confidence 0 012259999999999999999999999999999999999999999999999999986 688999999999887
Q ss_pred CCCeEecC-----CCCC--CchHHHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhh-CCC-cEEEEE
Q 025563 150 TPNGFMFR-----QFEN--PANPKIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEK-NPN-IKVYGV 216 (251)
Q Consensus 150 ~~~~~~~~-----~~~n--~~~~~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~-~~~-~~vigV 216 (251)
+ +++|++ +|+| +..+ .||.|+++||++|++ +.||+||+|+|+||+++|++.++++. .++ +||++|
T Consensus 183 ~-g~~~v~~~~~~~~~~~~~~~i-~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~V 260 (396)
T TIGR03528 183 N-GWVMVQDTAWEGYEKIPTWIM-QGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIV 260 (396)
T ss_pred c-CcEeeccccccccccCchHHH-HHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 6 788885 5765 3334 599999999999996 36999999999999999999999654 444 599999
Q ss_pred eCCCCccccC
Q 025563 217 EPTESAMLNG 226 (251)
Q Consensus 217 ep~~s~~~~~ 226 (251)
||++|+++..
T Consensus 261 ep~~a~~l~~ 270 (396)
T TIGR03528 261 EPDAADCLYR 270 (396)
T ss_pred ccCCCchHHH
Confidence 9999998863
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. |
| >PRK13028 tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=308.36 Aligned_cols=223 Identities=22% Similarity=0.224 Sum_probs=178.1
Q ss_pred CccccccchhhHHHHHHH--------------hhcccC-CCcceecccccccC-CceEEEEeCCCCCCCchhhHHHHHHH
Q 025563 2 VLEASMEDNHHKRAIKKD--------------ATQLIG-NTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMI 65 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------------v~~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~l 65 (251)
++|..|+.+++....+.. +..+++ +|||+++++|++.+ |++||+|+|++||+||||+|.+...+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~ 102 (402)
T PRK13028 23 VPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQA 102 (402)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHH
Confidence 345555555555544443 335565 79999999999988 57999999999999999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH---HHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 025563 66 KDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM---ERRIVLRALGAEVYLADQ-AGGFEGILR 141 (251)
Q Consensus 66 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~---~~~~~~~~~Ga~v~~v~~-~~~~~~~~~ 141 (251)
..+.+.|+ +..|+++|+||||+|+|++|+++|++|+||||+...+ .|+.+|+.+||+|+.|+. ..+++++.+
T Consensus 103 l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~ 178 (402)
T PRK13028 103 LLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVD 178 (402)
T ss_pred HHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHH
Confidence 99988885 3336679999999999999999999999999986433 568899999999999984 346888888
Q ss_pred HHHH-HhhcCCCeEecC-CC----CCCchHHHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCc
Q 025563 142 KGEE-ILSNTPNGFMFR-QF----ENPANPKIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNI 211 (251)
Q Consensus 142 ~a~~-~~~~~~~~~~~~-~~----~n~~~~~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~ 211 (251)
.+.+ +.++.++.+|+. +. ..|.++..||.+++.||.+|+. ..||+||+|+|+||+++|++.+|++ .+++
T Consensus 179 ~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v 257 (402)
T PRK13028 179 SAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESV 257 (402)
T ss_pred HHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCc
Confidence 8744 565544566663 21 2244555699999999999973 3699999999999999999999986 4889
Q ss_pred EEEEEeCCC--------CccccCCCC
Q 025563 212 KVYGVEPTE--------SAMLNGGQP 229 (251)
Q Consensus 212 ~vigVep~~--------s~~~~~~~~ 229 (251)
|||||||.+ |+++..+.+
T Consensus 258 ~iigVE~~G~~~~~~~~aa~l~~g~~ 283 (402)
T PRK13028 258 RLVGVEPAGRGLDLGEHAATLTLGKP 283 (402)
T ss_pred eEEEEecCCCCcccccccccccCCCc
Confidence 999999999 777765544
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=322.98 Aligned_cols=229 Identities=20% Similarity=0.227 Sum_probs=183.8
Q ss_pred CccccccchhhHHHHHHH--------------hhcccC-CCcceeccccccc----CC--ceEEEEeCCCCCCCchhhHH
Q 025563 2 VLEASMEDNHHKRAIKKD--------------ATQLIG-NTPMVYLNNVVDG----CV--ARIAAKLEMMEPCCSVKDRI 60 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------------v~~~~~-~TPl~~~~~l~~~----~g--~~i~~K~E~~~ptGS~K~R~ 60 (251)
++|..|+.+++...++.+ +..++| +|||+++++|++. +| .+||+|+|++|||||||+|.
T Consensus 287 ~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~ 366 (695)
T PRK13802 287 VPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINN 366 (695)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHH
Confidence 345555555555544443 446788 9999999998753 44 69999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCEEEEeCCC-CCh
Q 025563 61 ALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQA-GGF 136 (251)
Q Consensus 61 a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~v~~~-~~~ 136 (251)
+..++..+.+.|+ ...++++|+||||+|+|++|+++|++|+||||.. .+..|+.+|+.+||+|+.++.. .++
T Consensus 367 Al~~i~~A~~~G~----~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l 442 (695)
T PRK13802 367 ALGQALLVKRMGK----TRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRIL 442 (695)
T ss_pred HHHHHHHHHHcCC----CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcH
Confidence 9999999999986 2348899999999999999999999999999985 3678999999999999999843 367
Q ss_pred HHHHHHH-HHHhhcCC-CeEecCCCCCC----chHHHHHhhHHHHHhhhhCC-----CCCEEEEecCchhHHHHHHHHHH
Q 025563 137 EGILRKG-EEILSNTP-NGFMFRQFENP----ANPKIHYETTGPEIWKDSGG-----DVDILVAGIGTGGTVTGSGRFLK 205 (251)
Q Consensus 137 ~~~~~~a-~~~~~~~~-~~~~~~~~~n~----~~~~~g~~t~~~EI~~q~~~-----~~d~vv~~vGtGg~~~Gi~~~~~ 205 (251)
+++.+.+ +++.++.+ ..|+++++.|+ .++..||.++|.||++|+.. .||+||+|+|+||+++|++.+|+
T Consensus 443 ~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~ 522 (695)
T PRK13802 443 KDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFL 522 (695)
T ss_pred HHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHH
Confidence 7776555 55666543 44678887654 34557999999999999852 69999999999999999999997
Q ss_pred hhCCCcEEEEEeCCCCccccCCCCCceee---cccCC
Q 025563 206 EKNPNIKVYGVEPTESAMLNGGQPGRLLF---FLFFL 239 (251)
Q Consensus 206 ~~~~~~~vigVep~~s~~~~~~~~~~~~i---~g~g~ 239 (251)
+ .+++||+||||.++. ..++.|.+ +|+|.
T Consensus 523 ~-~~~vkligVE~~g~g----~~~g~h~~~~~~g~g~ 554 (695)
T PRK13802 523 D-DERVNLYGYEAGGNG----PESGKHAIRFAPGTGE 554 (695)
T ss_pred h-CCCceEEEEEecCCC----ccccchhhhhhhccCC
Confidence 6 688999999999974 33444444 56665
|
|
| >PRK04346 tryptophan synthase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=306.06 Aligned_cols=215 Identities=20% Similarity=0.229 Sum_probs=171.4
Q ss_pred CccccccchhhHHHHHHH--------------hhcccC-CCcceecccccccC-CceEEEEeCCCCCCCchhhHHHHHHH
Q 025563 2 VLEASMEDNHHKRAIKKD--------------ATQLIG-NTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMI 65 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------------v~~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~l 65 (251)
++|..|+.+++...++.+ +.+++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+...+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~ 98 (397)
T PRK04346 19 VPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQA 98 (397)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHH
Confidence 345555555555544443 345676 59999999999988 57999999999999999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-c--HHHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 025563 66 KDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-S--MERRIVLRALGAEVYLADQ-AGGFEGILR 141 (251)
Q Consensus 66 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~--~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~ 141 (251)
..|.+.|+ +..|+++|+||||.|+|++|+++|++|+||||... + ..|+.+|+.+||+|+.|+. ..+++++.+
T Consensus 99 l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ 174 (397)
T PRK04346 99 LLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVN 174 (397)
T ss_pred HHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 99988885 33466789999999999999999999999999853 3 3578889999999999984 346776666
Q ss_pred HHHH-HhhcCCCeEec-CCCCC----CchHHHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCc
Q 025563 142 KGEE-ILSNTPNGFMF-RQFEN----PANPKIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNI 211 (251)
Q Consensus 142 ~a~~-~~~~~~~~~~~-~~~~n----~~~~~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~ 211 (251)
.+.+ +.++.++.+|+ .+..+ |.++..||.+++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++
T Consensus 175 ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v 253 (397)
T PRK04346 175 EALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESV 253 (397)
T ss_pred HHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCC
Confidence 5544 55553355554 33222 34555699999999999974 3699999999999999999999976 8889
Q ss_pred EEEEEeCCCC
Q 025563 212 KVYGVEPTES 221 (251)
Q Consensus 212 ~vigVep~~s 221 (251)
|||||||.++
T Consensus 254 ~iigVE~~G~ 263 (397)
T PRK04346 254 RLIGVEAAGK 263 (397)
T ss_pred eEEEEecCCC
Confidence 9999999986
|
|
| >TIGR00260 thrC threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=306.49 Aligned_cols=196 Identities=21% Similarity=0.195 Sum_probs=174.4
Q ss_pred HhhcccCCCcceecccccccCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
.+...+++|||++++++++.+|. +||+|+|++|||||||||++.+++..+.++|. . +||++|+||||+|+|++|
T Consensus 16 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~-~vv~aSsGN~g~a~A~~a 90 (328)
T TIGR00260 16 LVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN----D-TVLCASTGNTGAAAAAYA 90 (328)
T ss_pred hhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC----C-EEEEeCCcHHHHHHHHHh
Confidence 57778899999999999888887 99999999999999999999999999988874 2 499999999999999999
Q ss_pred HHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCC--CchHHHHHhhHHH
Q 025563 98 ALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFEN--PANPKIHYETTGP 174 (251)
Q Consensus 98 ~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n--~~~~~~g~~t~~~ 174 (251)
+.+|++|+||||+. .++.|++.++.+||+|+.+++ +++++.+.+++++++. +.+++++ .| +.+++ ||.++++
T Consensus 91 ~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~~~-g~~t~~~ 165 (328)
T TIGR00260 91 GKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIPYRLE-GQKTYAF 165 (328)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCCeEee-eehhHHH
Confidence 99999999999998 899999999999999999997 6889999999988875 4555554 45 88885 9999999
Q ss_pred HHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhhCC-----CcEEEEEeCCCCccc
Q 025563 175 EIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKNP-----NIKVYGVEPTESAML 224 (251)
Q Consensus 175 EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~~-----~~~vigVep~~s~~~ 224 (251)
||++|++. .+|+||+|+|+||+++|++.+|++... .+++++|||++|+++
T Consensus 166 Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~ 221 (328)
T TIGR00260 166 EAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADI 221 (328)
T ss_pred HHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChH
Confidence 99999974 799999999999999999999998511 249999999999544
|
Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model. |
| >PLN02618 tryptophan synthase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=304.16 Aligned_cols=198 Identities=21% Similarity=0.281 Sum_probs=161.6
Q ss_pred HhhcccC-CCcceecccccccC------CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHH
Q 025563 19 DATQLIG-NTPMVYLNNVVDGC------VARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGI 91 (251)
Q Consensus 19 ~v~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~ 91 (251)
.+..++| +|||+++++|++.+ |++||+|+|++|||||||+|.+...+..|.+.|+ +..|+++|+||||.
T Consensus 58 ~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~ 133 (410)
T PLN02618 58 ILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHGV 133 (410)
T ss_pred HHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHH
Confidence 3667786 89999999999876 4799999999999999999999999888888774 33355677899999
Q ss_pred HHHHHHHHCCCcEEEEecCCC---cHHHHHHHHHcCCEEEEeCC-CCChHHHHH-HHHHHhhcCCCeEec-CCCC--C--
Q 025563 92 GLAFIAALRGYKLIIVMPSIA---SMERRIVLRALGAEVYLADQ-AGGFEGILR-KGEEILSNTPNGFMF-RQFE--N-- 161 (251)
Q Consensus 92 alA~~a~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~--n-- 161 (251)
|+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.|+. ..+++++.. .+++++++.++.+|+ .+.. +
T Consensus 134 AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~ 213 (410)
T PLN02618 134 ATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 213 (410)
T ss_pred HHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCC
Confidence 999999999999999999853 35677899999999999954 347888874 445677664455665 2211 1
Q ss_pred CchHHHHHhhHHHHHhhhh----CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 162 PANPKIHYETTGPEIWKDS----GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 162 ~~~~~~g~~t~~~EI~~q~----~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
+.....++.++|.||.+|+ +..||+||+|+|+||+++|++.+|+. .+++|||||||+++
T Consensus 214 ~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 214 PMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCC
Confidence 2233469999999998876 34699999999999999999999975 78999999999997
|
|
| >TIGR00263 trpB tryptophan synthase, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=300.78 Aligned_cols=199 Identities=21% Similarity=0.230 Sum_probs=162.8
Q ss_pred HHhhcccC-CCcceecccccccCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 18 KDATQLIG-NTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 18 ~~v~~~~~-~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
..+..+++ +|||+++++|++.+| .+||+|+|++|||||||+|.+..++..+.+.|. ...++++|+||||+|+|+
T Consensus 41 ~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~ 116 (385)
T TIGR00263 41 ELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATAT 116 (385)
T ss_pred HHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHH
Confidence 33445554 899999999998887 799999999999999999999999999888774 233667999999999999
Q ss_pred HHHHCCCcEEEEecCC-CcH--HHHHHHHHcCCEEEEeCCC-CChHHHH-HHHHHHhhcCCCeEec-CCCCC----CchH
Q 025563 96 IAALRGYKLIIVMPSI-ASM--ERRIVLRALGAEVYLADQA-GGFEGIL-RKGEEILSNTPNGFMF-RQFEN----PANP 165 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~-~~~--~~~~~~~~~Ga~v~~v~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~n----~~~~ 165 (251)
+|+++|++|+||||+. .+. .++++++.+||+|+.++.. +.++++. +.+++++++.++.+|+ +++.| +.++
T Consensus 117 ~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~ 196 (385)
T TIGR00263 117 AAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMV 196 (385)
T ss_pred HHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHH
Confidence 9999999999999975 333 5788999999999999753 3566664 4445556654455665 44433 3555
Q ss_pred HHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 166 KIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 166 ~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
..||.|++.||++|+. ..||+||+|+|+||+++|++.+|.+ .|++|||||||+++
T Consensus 197 ~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs 255 (385)
T TIGR00263 197 RDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGL 255 (385)
T ss_pred HHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCC
Confidence 5799999999999973 2589999999999999999998865 68999999999996
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model. |
| >TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=293.28 Aligned_cols=193 Identities=21% Similarity=0.197 Sum_probs=163.6
Q ss_pred ccCCCcceecccccccCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--ccChHHHHHHHHHH
Q 025563 23 LIGNTPMVYLNNVVDGCVARIAAKLEMMEPC--CSVKDRIALSMIKDAEEKGLITPGKSVLIET--TGGNTGIGLAFIAA 98 (251)
Q Consensus 23 ~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~ 98 (251)
...+|||+++++|++..|.+||+|+|++||+ ||||+|++.+++.++.++|. + +||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~----~-~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA----D-TVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC----C-EEEEcCCchhHHHHHHHHHHH
Confidence 4578999999999888889999999999998 99999999999999999885 3 48888 55999999999999
Q ss_pred HCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhh----cCC-CeEecCCCCCCchHHHHHhhH
Q 025563 99 LRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILRKGEEILS----NTP-NGFMFRQFENPANPKIHYETT 172 (251)
Q Consensus 99 ~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~n~~~~~~g~~t~ 172 (251)
++|++|++|||... +..+..+++.+||+|+.++.. +++++.+.+.++++ +.+ .+++.+++.|+.+.+ |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 456677789999999999863 34444444444432 322 345668889999986 77789
Q ss_pred HHHHhhhhCC--CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 025563 173 GPEIWKDSGG--DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222 (251)
Q Consensus 173 ~~EI~~q~~~--~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~ 222 (251)
++||++|++. +||+||+|+|||||++|++++|++.+|+++||||||+.+.
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~ 208 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFG 208 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccH
Confidence 9999999964 7999999999999999999999999999999999988663
|
This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7). |
| >PRK03910 D-cysteine desulfhydrase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=295.51 Aligned_cols=202 Identities=21% Similarity=0.190 Sum_probs=171.6
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEec--cChHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPC--CSVKDRIALSMIKDAEEKGLITPGKSVLIETT--GGNTGIGL 93 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s--sGN~g~al 93 (251)
.++...+++|||++++.|++..|.+||+|+|++||+ ||||+|++.+++.++.++|. . .||++| +||||+|+
T Consensus 7 ~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~----~-~vvt~g~s~gN~g~al 81 (331)
T PRK03910 7 PRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA----D-TLITAGAIQSNHARQT 81 (331)
T ss_pred CCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC----C-EEEEcCcchhHHHHHH
Confidence 457788999999999999888889999999999996 59999999999999998874 3 377775 38999999
Q ss_pred HHHHHHCCCcEEEEecCCCcH--------HHHHHHHHcCCEEEEeCCCCChHH-HHHHHHHHhhcCCCe-EecCCCCCCc
Q 025563 94 AFIAALRGYKLIIVMPSIASM--------ERRIVLRALGAEVYLADQAGGFEG-ILRKGEEILSNTPNG-FMFRQFENPA 163 (251)
Q Consensus 94 A~~a~~~G~~~~ivvp~~~~~--------~~~~~~~~~Ga~v~~v~~~~~~~~-~~~~a~~~~~~~~~~-~~~~~~~n~~ 163 (251)
|++|+.+|++|+||||...++ .++..++.+||+|+.++..++..+ +...++++.++.+.. ++..++.|+.
T Consensus 82 A~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 161 (331)
T PRK03910 82 AAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNAL 161 (331)
T ss_pred HHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCch
Confidence 999999999999999998765 466899999999999987533323 344566666654333 3456889999
Q ss_pred hHHHHHhhHHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 164 NPKIHYETTGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 164 ~~~~g~~t~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+.+ ||.+++.||++|++. .||+||+|+||||+++|++++|++.+|+++||||||++++.+.
T Consensus 162 ~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~ 225 (331)
T PRK03910 162 GAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQ 225 (331)
T ss_pred hHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHH
Confidence 986 889999999999963 6999999999999999999999999999999999999986653
|
|
| >PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=290.10 Aligned_cols=210 Identities=36% Similarity=0.471 Sum_probs=173.3
Q ss_pred hhcccCCCcceecc--cccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 20 ATQLIGNTPMVYLN--NVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 20 v~~~~~~TPl~~~~--~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
|+..+++|||++++ .+.+..+.+||+|+|++|||||||+|++.+++..+++++. . .|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~----~-~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG----R-TVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT----S-EEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc----c-eeeeeccCCceehhhhhh
Confidence 57889999999975 4555667899999999999999999999999999988864 3 489999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc-------CCCeEecCCCCCCchHHHHHh
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN-------TPNGFMFRQFENPANPKIHYE 170 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~n~~~~~~g~~ 170 (251)
+++|++|++|+|+++++.++++++.+||+|+.++.. ++++.+.+.+++++ .++. ++|++|+... .||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQYNNPNVI-AGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTTTSHHHH-HHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcccchhhh-hhhh
Confidence 999999999999999999999999999999999863 44444444443332 2122 6777454444 6999
Q ss_pred hHHHHHhhhhCCCCCE--EEEecCchhHHHHHHHHHHh--hCCCcEEEEEeCCCCcccc----CCC----CCceeecccC
Q 025563 171 TTGPEIWKDSGGDVDI--LVAGIGTGGTVTGSGRFLKE--KNPNIKVYGVEPTESAMLN----GGQ----PGRLLFFLFF 238 (251)
Q Consensus 171 t~~~EI~~q~~~~~d~--vv~~vGtGg~~~Gi~~~~~~--~~~~~~vigVep~~s~~~~----~~~----~~~~~i~g~g 238 (251)
+++.||.+|++ .||. ||+|+|+||+++|++.+++. . |++||++|||.+++++. .+. +..+.+.||+
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999997 6665 99999999999999999999 7 89999999999998775 233 2335677888
Q ss_pred Ccc
Q 025563 239 LFF 241 (251)
Q Consensus 239 ~~~ 241 (251)
.+.
T Consensus 229 ~~~ 231 (306)
T PF00291_consen 229 VPM 231 (306)
T ss_dssp SSS
T ss_pred CCc
Confidence 876
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D .... |
| >cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=292.96 Aligned_cols=206 Identities=21% Similarity=0.230 Sum_probs=164.4
Q ss_pred HHHHHhhccc-CCCcceecccccccC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHH
Q 025563 15 AIKKDATQLI-GNTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIG 92 (251)
Q Consensus 15 ~~~~~v~~~~-~~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~a 92 (251)
.++....+++ .+|||++++++++.+ +.+||+|+|++||+||||+|.+..++..+.++|. ...++++|+||||+|
T Consensus 22 ~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssGN~g~a 97 (365)
T cd06446 22 ELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAGQHGVA 97 (365)
T ss_pred HHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCchHHHHH
Confidence 3344444444 499999999998887 5799999999999999999999999999988885 232445789999999
Q ss_pred HHHHHHHCCCcEEEEecCCCc---HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HhhcCCC-eEecCCC----CCC
Q 025563 93 LAFIAALRGYKLIIVMPSIAS---MERRIVLRALGAEVYLADQA-GGFEGILRKGEE-ILSNTPN-GFMFRQF----ENP 162 (251)
Q Consensus 93 lA~~a~~~G~~~~ivvp~~~~---~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~-~~~~~~~-~~~~~~~----~n~ 162 (251)
+|++|+++|++|+||+|+..+ +.++.+++.+||+|+.++.. .+++++...+.+ ..++.++ .|+++++ .++
T Consensus 98 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 98 TATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred HHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 999999999999999998643 35788999999999999864 245666644433 3443223 4444332 223
Q ss_pred chHHHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 163 ANPKIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 163 ~~~~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
.++.+||.++++||++|+. ..||+||+|+|+||+++|+++++++ .+++|||||||++|+++.
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~ 243 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLET 243 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCcccc
Confidence 4566799999999999985 3699999999999999999999887 468999999999998875
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. |
| >TIGR03844 cysteate_syn cysteate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=296.86 Aligned_cols=211 Identities=14% Similarity=0.070 Sum_probs=176.5
Q ss_pred ccccchhhHHHHHHHhhcccCCCcceecccccccCCc-eEEEE-------eCCCCCCCchhhHHHHHHHHHHHHcCCCCC
Q 025563 5 ASMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVA-RIAAK-------LEMMEPCCSVKDRIALSMIKDAEEKGLITP 76 (251)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~-~i~~K-------~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~ 76 (251)
..|+++.+.+++.+. ....+.|||++.++|++.+|. ++|+| +|++|||||||||++.+++..+.+.|.
T Consensus 42 ~~~wry~~~lP~~~~-~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~--- 117 (398)
T TIGR03844 42 PGIFRYYDWLPVTGH-LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG--- 117 (398)
T ss_pred CchhhhHhhCCCCCC-CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC---
Confidence 356666666665433 446677999999999999998 99995 555899999999999999999998873
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEec
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMF 156 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~ 156 (251)
..||++|+||||.|+|++|+++|++|+||||++.+..+...++.+||+|+.+++ +|+++.+.++++++++ +++..
T Consensus 118 --~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~ 192 (398)
T TIGR03844 118 --KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPE 192 (398)
T ss_pred --CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-Ccccc
Confidence 349999999999999999999999999999998644333335789999999987 6899999999998876 66555
Q ss_pred CCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhC-------CCcEEEEEeCCCCcccc
Q 025563 157 RQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKN-------PNIKVYGVEPTESAMLN 225 (251)
Q Consensus 157 ~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~-------~~~~vigVep~~s~~~~ 225 (251)
++++|+..++ |++|+++||++|++..||+||+|+|+|+.+.|++.++++.. ..+|+++|||++|+++.
T Consensus 193 ~~~~~p~~ie-G~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~ 267 (398)
T TIGR03844 193 GGARNVARRD-GMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMV 267 (398)
T ss_pred CCCCCHHHHh-hHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHH
Confidence 6678898886 99999999999996459999999999988999999998741 34799999999998775
|
Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M. |
| >cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=286.87 Aligned_cols=193 Identities=22% Similarity=0.213 Sum_probs=161.0
Q ss_pred CcceecccccccC--CceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--ccChHHHHHHHHHHH
Q 025563 27 TPMVYLNNVVDGC--VARIAAKLEMMEPC---CSVKDRIALSMIKDAEEKGLITPGKSVLIET--TGGNTGIGLAFIAAL 99 (251)
Q Consensus 27 TPl~~~~~l~~~~--g~~i~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~~ 99 (251)
|||+++++|++.+ +.+||+|+|++||+ ||||+|++.+++.++.++|. . .||++ |+||||+|+|++|++
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~----~-~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA----D-TLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC----C-EEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 56999999999998 57799999999999998885 3 38887 579999999999999
Q ss_pred CCCcEEEEecCCCc--------HHHHHHHHHcCCEEEEeCCCCC--hHHHHHH-HHHHhhcCCCeEe-cCCC-CCCchHH
Q 025563 100 RGYKLIIVMPSIAS--------MERRIVLRALGAEVYLADQAGG--FEGILRK-GEEILSNTPNGFM-FRQF-ENPANPK 166 (251)
Q Consensus 100 ~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~~--~~~~~~~-a~~~~~~~~~~~~-~~~~-~n~~~~~ 166 (251)
+|++|+||||...+ ..|+++++.+||+|+.++...+ ..++.+. ++++.++.+..|+ .+++ +|+.+.+
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999998876 4689999999999999987421 1222333 3334444323344 4555 4999996
Q ss_pred HHHhhHHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 167 IHYETTGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
||.+++.||++|++. .||+||+|+||||+++|++++|++.++++||++|||++|+.+.
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~ 216 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKT 216 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHH
Confidence 999999999999864 6999999999999999999999999999999999999997664
|
|
| >TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=288.21 Aligned_cols=203 Identities=19% Similarity=0.180 Sum_probs=167.9
Q ss_pred HHHhhcccCCCcceecccccccCCc--eEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--ccChH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCVA--RIAAKLEMMEPC---CSVKDRIALSMIKDAEEKGLITPGKSVLIET--TGGNT 89 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g~--~i~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~ 89 (251)
.+++...+++|||++++++++.+|. +||+|+|++||+ ||||+|.+.+++.+++++|+ . +|+++ |+|||
T Consensus 5 ~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~-~vvs~ggs~gN~ 79 (337)
T TIGR01274 5 FPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC----T-TLVSIGGIQSNQ 79 (337)
T ss_pred CCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC----C-EEEECCCCcchH
Confidence 3577888999999999999988874 999999999986 78899999999999999986 2 37776 66999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCc--------HHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHhhcC-CCeEecCC
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIAS--------MERRIVLRALGAEVYLADQAG--GFEGILRKGEEILSNT-PNGFMFRQ 158 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~ 158 (251)
|+|+|++|+++|++|+||||+..+ ..|+.+++.+||+|+.++... +..++...+.+.+++. +..|+++.
T Consensus 80 g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~ 159 (337)
T TIGR01274 80 TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPA 159 (337)
T ss_pred HHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCC
Confidence 999999999999999999998542 579999999999999998631 1234555555444444 23366655
Q ss_pred C--CCCchHHHHHhhHHHHHhhhh---CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 159 F--ENPANPKIHYETTGPEIWKDS---GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 159 ~--~n~~~~~~g~~t~~~EI~~q~---~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+ .++.... |+.++++||.+|+ +.+||+||+|+||||+++|+++++++.++++|||||||++++.+.
T Consensus 160 ~~~~~~~~~~-G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~ 230 (337)
T TIGR01274 160 GCSDHPLGGL-GFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQT 230 (337)
T ss_pred CCCCCccchh-HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHH
Confidence 4 2466664 8999999999995 347999999999999999999999999999999999999997663
|
This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. |
| >PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=287.83 Aligned_cols=203 Identities=19% Similarity=0.169 Sum_probs=167.6
Q ss_pred HHhhcccCCCcceecccccccCC--ceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--ccChHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPC---CSVKDRIALSMIKDAEEKGLITPGKSVLIET--TGGNTG 90 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ssGN~g 90 (251)
+++.+.+++|||++++++++.+| .+||+|+|++||+ ||+|+|.+.+++.++.++|. . +|+++ |+||||
T Consensus 7 ~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~-~vvs~G~s~GN~g 81 (337)
T PRK12390 7 PRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA----D-TLVSIGGVQSNHT 81 (337)
T ss_pred CccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC----C-EEEEeCCCccHHH
Confidence 46778899999999999988777 6999999999987 78899999999999999986 3 37877 779999
Q ss_pred HHHHHHHHHCCCcEEEEecCCCc--------HHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHhhcCCCeEe-cCCC
Q 025563 91 IGLAFIAALRGYKLIIVMPSIAS--------MERRIVLRALGAEVYLADQAG--GFEGILRKGEEILSNTPNGFM-FRQF 159 (251)
Q Consensus 91 ~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~--~~~~~~~~a~~~~~~~~~~~~-~~~~ 159 (251)
+|+|++|+++|++|++|++..++ ..|+.+++.+||+|+.++... .++++.+.+.+..++..+..| ++.+
T Consensus 82 ~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T PRK12390 82 RQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAG 161 (337)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCc
Confidence 99999999999999999876544 237778999999999998731 234666666666665334444 5554
Q ss_pred CC--CchHHHHHhhHHHHHhhh---hCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC
Q 025563 160 EN--PANPKIHYETTGPEIWKD---SGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG 226 (251)
Q Consensus 160 ~n--~~~~~~g~~t~~~EI~~q---~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~ 226 (251)
.+ +... .||.++++||++| ++.++|+||+|+|||||++|++.+|++..|++|||||||++++.+..
T Consensus 162 ~~~~~~~~-~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~ 232 (337)
T PRK12390 162 ASDHPLGG-LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTR 232 (337)
T ss_pred CCCCCccc-HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHH
Confidence 33 4444 4899999999998 44479999999999999999999999999999999999999977653
|
|
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=304.40 Aligned_cols=196 Identities=22% Similarity=0.237 Sum_probs=161.7
Q ss_pred hcccC-CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHH
Q 025563 21 TQLIG-NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAAL 99 (251)
Q Consensus 21 ~~~~~-~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 99 (251)
..+++ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+.+.|+ +..++++|+||||+|+|++|++
T Consensus 265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~ 340 (610)
T PRK13803 265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACAL 340 (610)
T ss_pred HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHH
Confidence 34555 899999999998889999999999999999999999999998888774 3336678999999999999999
Q ss_pred CCCcEEEEecCCC---cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHH-HHHhhcCCCeEecCCCC-----CCchHHHHH
Q 025563 100 RGYKLIIVMPSIA---SMERRIVLRALGAEVYLADQA-GGFEGILRKG-EEILSNTPNGFMFRQFE-----NPANPKIHY 169 (251)
Q Consensus 100 ~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~-----n~~~~~~g~ 169 (251)
+|++|+||||... +..++.+|+.+||+|+.++.. .+++++.+.+ +++.++.++.+|+.++. .+.++..||
T Consensus 341 ~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~ 420 (610)
T PRK13803 341 FGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ 420 (610)
T ss_pred cCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence 9999999999764 356888999999999999853 3566765544 44434445666764331 244554589
Q ss_pred hhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 170 ETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 170 ~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
.+++.||.+|+. ..||+||+|+|+||+++|++.+|++ .+++||+||||.++
T Consensus 421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~ 475 (610)
T PRK13803 421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGK 475 (610)
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCC
Confidence 999999999984 2599999999999999999999964 78999999999986
|
|
| >PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=284.85 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=167.3
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEE--EeccChHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPC--CSVKDRIALSMIKDAEEKGLITPGKSVLI--ETTGGNTGI 91 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv--~~ssGN~g~ 91 (251)
.++++.+..++|||++++++++..|++||+|+|++||+ ||||+|++.+++.++.++|+ ++ || ++|+||||+
T Consensus 11 ~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~-vv~~~~ssGN~g~ 85 (329)
T PRK14045 11 KFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----DV-VITVGAVHSNHAF 85 (329)
T ss_pred cCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----CE-EEEeCccHHHHHH
Confidence 44688899999999999999888889999999999996 89999999999999999886 33 55 689999999
Q ss_pred HHHHHHHHCCCcEEEEecCCCcHH-HHHHHHHcCCEEEEeCCCCC---hHHHHHHHHHHhhcCCCeEe-cCCCCCCchHH
Q 025563 92 GLAFIAALRGYKLIIVMPSIASME-RRIVLRALGAEVYLADQAGG---FEGILRKGEEILSNTPNGFM-FRQFENPANPK 166 (251)
Q Consensus 92 alA~~a~~~G~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~v~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~n~~~~~ 166 (251)
|+|++|+++|++|++|||...+.. +...++.+||+++.++...+ .+.+.+.+++++++.+..|+ .+++.|+.+..
T Consensus 86 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~ 165 (329)
T PRK14045 86 VTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL 165 (329)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH
Confidence 999999999999999999875433 66678999999998874322 23556666666666544555 56778998886
Q ss_pred HHHhhHHHHHhhhhC---CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCC
Q 025563 167 IHYETTGPEIWKDSG---GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTE 220 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~---~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~ 220 (251)
|+.+...||++|++ .++|+||+|+|||||++|++.+++..+|++|||||+|.+
T Consensus 166 -g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 166 -GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 66555669999986 379999999999999999999999999999999999977
|
|
| >COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=250.20 Aligned_cols=199 Identities=24% Similarity=0.207 Sum_probs=180.0
Q ss_pred HhhcccCCCcceecccccccCCc---eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVA---RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~---~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
.+....+.||+++.+++...++. ++|+|.|+.|||||||||++..++..+.+.|. . .|+++||||+|.|+|.
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~----~-~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA----K-TILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC----C-EEEEeCCchHHHHHHH
Confidence 45667889999999888887774 59999999999999999999999999999883 2 4999999999999999
Q ss_pred HHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 96 IAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
++.+.|++|.|++|++ ++..|+.++..+|++++.+++ +||+|++.+++++++. +.++....-||..++ |+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHh
Confidence 9999999999999998 999999999999999999998 6999999999999976 557777788999997 9999999
Q ss_pred HHhhhhC-CCCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCccccC
Q 025563 175 EIWKDSG-GDVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLNG 226 (251)
Q Consensus 175 EI~~q~~-~~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~~ 226 (251)
||++|+. ..||+|++|+|+||.+.|++.+|++..+ .+++.+||++++.++..
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~ 278 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVY 278 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhh
Confidence 9999997 4799999999999999999999998754 38999999999877653
|
|
| >COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=216.78 Aligned_cols=197 Identities=21% Similarity=0.242 Sum_probs=163.0
Q ss_pred hhccc-CCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 20 ATQLI-GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 20 v~~~~-~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
+..+. +||||...++|++.+|.+||+|||++|.+|+||...+...+.-|.+.|+ +..|.+..+|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 33455 4599999999999999999999999999999999999999988999997 455778888999999999999
Q ss_pred HCCCcEEEEecC-CC--cHHHHHHHHHcCCEEEEeC-CCCChHHHHHHH-HHHhhcCCCeEecC-----CCCCCchHHHH
Q 025563 99 LRGYKLIIVMPS-IA--SMERRIVLRALGAEVYLAD-QAGGFEGILRKG-EEILSNTPNGFMFR-----QFENPANPKIH 168 (251)
Q Consensus 99 ~~G~~~~ivvp~-~~--~~~~~~~~~~~Ga~v~~v~-~~~~~~~~~~~a-~~~~~~~~~~~~~~-----~~~n~~~~~~g 168 (251)
++|++|+|||-. ++ +..++-.|+.+||+|+.|. ++.++.|+.+.| +.+.......+|+- |..-|.....-
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 999999999955 33 3456778999999999996 456778888776 55666665666643 33345555568
Q ss_pred HhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 169 YETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 169 ~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
++.++.|.-+|+. ..||+||.|||+|+.+.|+...|.. .+++++||||+.|-
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~ 260 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGK 260 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcC
Confidence 8999999988853 4599999999999999999999976 46799999999874
|
|
| >COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=205.13 Aligned_cols=236 Identities=23% Similarity=0.185 Sum_probs=179.5
Q ss_pred ccccchhhHHHHHHHhhccc-CCCcceecccccccCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEE
Q 025563 5 ASMEDNHHKRAIKKDATQLI-GNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVL 81 (251)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~-~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~v 81 (251)
.|+++..+|..-...++..+ +||||++..+|.+.+| ++||+|.|...|+||||...|....-.+...|. +..+
T Consensus 56 ~s~eR~i~IP~Ev~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~ 131 (432)
T COG1350 56 FSGERYIKIPEEVREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLT 131 (432)
T ss_pred hhhhhcccCcHHHHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeee
Confidence 45555555655555566667 6899999999988876 599999999999999999999999888888886 3335
Q ss_pred EEeccChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCEEEEeCCCCCh----------------HHHHHH
Q 025563 82 IETTGGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQAGGF----------------EGILRK 142 (251)
Q Consensus 82 v~~ssGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~v~~~~~~----------------~~~~~~ 142 (251)
.+.++|.+|.|++++|+.+|++|+|||-+. ..+.+..+|+.|||+|+..+...+. .=++..
T Consensus 132 TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISE 211 (432)
T COG1350 132 TETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISE 211 (432)
T ss_pred cccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHH
Confidence 566779999999999999999999999663 4567888999999999998754211 124556
Q ss_pred HHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhh---CCCCCEEEEecCchhHHHHHHHHHHhh---C-CCcEEEE
Q 025563 143 GEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDS---GGDVDILVAGIGTGGTVTGSGRFLKEK---N-PNIKVYG 215 (251)
Q Consensus 143 a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~---~~~~d~vv~~vGtGg~~~Gi~~~~~~~---~-~~~~vig 215 (251)
|-+.+-++++..|....--.... .|+..+|.|..+|+ +..||.+|.|||+|+.++|+..-|... + ...++|+
T Consensus 212 AiE~al~~~~~kY~lGSVlnhvl-lhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiA 290 (432)
T COG1350 212 AIEYALKNENTKYSLGSVLNHVL-LHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIA 290 (432)
T ss_pred HHHHHHhCCCceecchhHHHHHH-HHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEE
Confidence 66665555555665444333344 49999999996665 467999999999999999999877543 2 2389999
Q ss_pred EeCCCCccccCCCCC-----------ceeecccCCcccccc
Q 025563 216 VEPTESAMLNGGQPG-----------RLLFFLFFLFFFCFF 245 (251)
Q Consensus 216 Vep~~s~~~~~~~~~-----------~~~i~g~g~~~~~~~ 245 (251)
|||..||.+..|+.. --.+..||+-|+|--
T Consensus 291 vep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPp 331 (432)
T COG1350 291 VEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPP 331 (432)
T ss_pred eCCccCCccccceeeccCCchhccchhhhhhccCCCccCCC
Confidence 999999998865322 234557777777643
|
|
| >COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=201.43 Aligned_cols=203 Identities=20% Similarity=0.220 Sum_probs=166.9
Q ss_pred HHHHHhhcccCCCcceecccccccCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc--ChHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEP--CCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG--GNTG 90 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss--GN~g 90 (251)
.-++|+....++||+.+++++++.+|.+||+||||+.+ .|++|.|+.++++.+|+.+|. + ++|++++ +||.
T Consensus 4 ~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~----d-TlvT~GgiQSNh~ 78 (323)
T COG2515 4 SRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA----D-TLVTYGGIQSNHV 78 (323)
T ss_pred ccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC----c-EEEEecccchhHH
Confidence 34678888999999999999999999999999999965 689999999999999999985 3 4888888 9999
Q ss_pred HHHHHHHHHCCCcEEEEecCCC----cHHHHHHHHHcCCEEEEeCCCCCh--HHHHHHHHHHhhcCCC-eEecCC-CCCC
Q 025563 91 IGLAFIAALRGYKLIIVMPSIA----SMERRIVLRALGAEVYLADQAGGF--EGILRKGEEILSNTPN-GFMFRQ-FENP 162 (251)
Q Consensus 91 ~alA~~a~~~G~~~~ivvp~~~----~~~~~~~~~~~Ga~v~~v~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~-~~n~ 162 (251)
+++|++|+++|++|+.++.... ...++...+.+|+++..++...+. +.-.+...+..++.++ .|.+.. ..|+
T Consensus 79 r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~ 158 (323)
T COG2515 79 RQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSP 158 (323)
T ss_pred HHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCc
Confidence 9999999999999999996543 234777888999999999987555 3233333333333333 344443 3466
Q ss_pred chHHHHHhhHHHHHhhhhC--CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcc
Q 025563 163 ANPKIHYETTGPEIWKDSG--GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAM 223 (251)
Q Consensus 163 ~~~~~g~~t~~~EI~~q~~--~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~ 223 (251)
.... ||...+.||.+|.+ -.+|.||+++|||||.||+..++...+++++|||+...+.+.
T Consensus 159 ~g~l-Gyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~ 220 (323)
T COG2515 159 LGAL-GYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE 220 (323)
T ss_pred cccc-cHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH
Confidence 5554 99999999999987 579999999999999999999999999999999999887754
|
|
| >KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=194.36 Aligned_cols=207 Identities=20% Similarity=0.203 Sum_probs=154.0
Q ss_pred chhhHHHHHHHhhc-ccCCCcceecccccccC--CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEec
Q 025563 9 DNHHKRAIKKDATQ-LIGNTPMVYLNNVVDGC--VARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETT 85 (251)
Q Consensus 9 ~~~~~~~~~~~v~~-~~~~TPl~~~~~l~~~~--g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s 85 (251)
+++++.+-+..++. ..++|||++.++|.+.+ |.+||+|+|++|++||||...|...+..+.+.|+ +..|.+.+
T Consensus 104 ~d~df~ee~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETG 179 (477)
T KOG1395|consen 104 RDEDFWEEFLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETG 179 (477)
T ss_pred ccchHHHHHHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccC
Confidence 45555555566664 45679999999998877 5799999999999999999999988888888887 44577888
Q ss_pred cChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHH-hhcCCCeEecC---
Q 025563 86 GGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQ-AGGFEGILRKGEEI-LSNTPNGFMFR--- 157 (251)
Q Consensus 86 sGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a~~~-~~~~~~~~~~~--- 157 (251)
+|.||.|+|.+|+++|++|+|+|-.. ..+.++-+||.+||+|+.|.. ...++++-..+-++ .....-.+|+-
T Consensus 180 AGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~ 259 (477)
T KOG1395|consen 180 AGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSA 259 (477)
T ss_pred CCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeeccc
Confidence 89999999999999999999999543 346678889999999999964 23444444444222 22222233322
Q ss_pred --CCCCCchHHHHHhhHHHHHhhhh----CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCC
Q 025563 158 --QFENPANPKIHYETTGPEIWKDS----GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTE 220 (251)
Q Consensus 158 --~~~n~~~~~~g~~t~~~EI~~q~----~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~ 220 (251)
++--|.....-+.+++.|-..|. +..||.||.|+|+|+..+|+..-|.. ...++.+|||..+
T Consensus 260 ~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaag 327 (477)
T KOG1395|consen 260 IGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAG 327 (477)
T ss_pred CCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-cchhheeeeeecc
Confidence 22222333346678888876664 34699999999999999999999876 3448899988765
|
|
| >PRK09225 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=186.95 Aligned_cols=181 Identities=14% Similarity=0.095 Sum_probs=147.2
Q ss_pred CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCeEEEEeccChHHHHH-HHHHHHCC
Q 025563 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALS---MIKDAEEKGLITPGKSVLIETTGGNTGIGL-AFIAALRG 101 (251)
Q Consensus 26 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~---~l~~a~~~g~~~~g~~~vv~~ssGN~g~al-A~~a~~~G 101 (251)
.+||.++. -++|+.--+.+||||||||++.. ++..+++ +. ...|+++||||+|.|+ +.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 47887764 25888777889999999999988 7777776 42 3359999999999998 78889999
Q ss_pred CcEEEEecCC-CcHHHHHHHHHc-CCEE--EEeCCCCChHHHHHHHHHHhhc------CCCeEecCCCCCCchHHHHHhh
Q 025563 102 YKLIIVMPSI-ASMERRIVLRAL-GAEV--YLADQAGGFEGILRKGEEILSN------TPNGFMFRQFENPANPKIHYET 171 (251)
Q Consensus 102 ~~~~ivvp~~-~~~~~~~~~~~~-Ga~v--~~v~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~n~~~~~~g~~t 171 (251)
++|+|++|++ ++..++.+|..+ |++| +.|++ ++++|.+.++++.++ . +++-.+. -|+.+++ |+.+
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G--~fDD~q~~vk~~~~d~~~~~~~-~l~saNS-iN~~Ri~-gQ~~ 230 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEG--NFDDCQALVKAAFNDEELKEKL-KLSSANS-INIGRLL-AQIV 230 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCC--CHHHHHHHHHHHhhchhhhhcC-ceEEEec-cCHHHHH-HHHH
Confidence 9999999986 999999999999 8977 66666 699999998887655 3 4444555 4888886 9999
Q ss_pred HHHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 172 TGPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 172 ~~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
.++|+.+|+.. .||.|++|+|+||.+.|.+.+.+---|-.|+++++ ..++++
T Consensus 231 yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l 285 (462)
T PRK09225 231 YYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVL 285 (462)
T ss_pred HHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHH
Confidence 99999999963 48999999999999999999833323656999997 555444
|
|
| >cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=180.98 Aligned_cols=181 Identities=13% Similarity=0.043 Sum_probs=146.7
Q ss_pred CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHH---HHHHHHcCCCCCCCeEEEEeccChHHHH-HHHHHHHCC
Q 025563 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSM---IKDAEEKGLITPGKSVLIETTGGNTGIG-LAFIAALRG 101 (251)
Q Consensus 26 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~---l~~a~~~g~~~~g~~~vv~~ssGN~g~a-lA~~a~~~G 101 (251)
-+||.++. -++|++..+.+||||||||++..+ +..++++.. +...|+++||||+|.| ++.++.+.|
T Consensus 87 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~g 156 (460)
T cd01560 87 IAPLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPN 156 (460)
T ss_pred ccceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCC
Confidence 37777754 268999999999999999999876 666665421 2445999999999999 588899999
Q ss_pred CcEEEEecCC-CcHHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHhhcC-----CCeEecCCCCCCchHHHHHhhH
Q 025563 102 YKLIIVMPSI-ASMERRIVLRALGA---EVYLADQAGGFEGILRKGEEILSNT-----PNGFMFRQFENPANPKIHYETT 172 (251)
Q Consensus 102 ~~~~ivvp~~-~~~~~~~~~~~~Ga---~v~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~ 172 (251)
++|+|++|.+ +++.++.+|..+|+ +++.|++ +|++|.+.++++.++. -+++-.+. -|+.+++ ++.+.
T Consensus 157 i~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-~Q~~y 232 (460)
T cd01560 157 VDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWARIL-AQIVY 232 (460)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHHH-HHHHH
Confidence 9999999986 99999999999996 8888887 6999999988876542 13444444 4888886 99999
Q ss_pred HHHHhhhhCC----CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCC
Q 025563 173 GPEIWKDSGG----DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTE 220 (251)
Q Consensus 173 ~~EI~~q~~~----~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~ 220 (251)
+.|+++|+.. .+|.|+||+|+||.+.|.+.+.+---|-.|+++++.+.
T Consensus 233 yf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n 284 (460)
T cd01560 233 YFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN 284 (460)
T ss_pred HHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence 9999999853 58999999999999999999865434667899975543
|
The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins. |
| >COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-19 Score=151.29 Aligned_cols=201 Identities=21% Similarity=0.247 Sum_probs=169.2
Q ss_pred ccCCCcceecccccc----cC----CceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCC-----------
Q 025563 23 LIGNTPMVYLNNVVD----GC----VARIAAKLEMMEP-CCSVKDRIALSMIKD-----AEEKGLITPG----------- 77 (251)
Q Consensus 23 ~~~~TPl~~~~~l~~----~~----g~~i~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g----------- 77 (251)
.+-..||+..+.+.+ ++ ..++|+|.|+.-| +||.|.|+..|-+.. |++.|.++..
T Consensus 75 GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f 154 (443)
T COG3048 75 GIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEF 154 (443)
T ss_pred CeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHH
Confidence 455678887765532 22 2389999999998 899999988777653 5667765422
Q ss_pred -----CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCC
Q 025563 78 -----KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPN 152 (251)
Q Consensus 78 -----~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~ 152 (251)
.-.+...|+||.|.++..+++.+|+++++.|+.+...+|.+.+|..|.+|+..+. ||..+.+.-++-+++.|.
T Consensus 155 ~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~ 232 (443)
T COG3048 155 KDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPN 232 (443)
T ss_pred HHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCc
Confidence 1237889999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred eEecCCCCCCchHHHHHhhHHHHHhhhhC--------CCCCEEEEecCchhHHHHHHHHHHhhC-CCcEEEEEeCCCCcc
Q 025563 153 GFMFRQFENPANPKIHYETTGPEIWKDSG--------GDVDILVAGIGTGGTVTGSGRFLKEKN-PNIKVYGVEPTESAM 223 (251)
Q Consensus 153 ~~~~~~~~n~~~~~~g~~t~~~EI~~q~~--------~~~d~vv~~vGtGg~~~Gi~~~~~~~~-~~~~vigVep~~s~~ 223 (251)
.||++.-++..... ||...+.-+-.|+. ..|-.|..|+|.||.-.|++.++|... .++.++-+||.+|||
T Consensus 233 c~FiDDE~S~~LFL-GYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPc 311 (443)
T COG3048 233 CFFIDDENSRTLFL-GYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPC 311 (443)
T ss_pred eEEecccchhhhhh-hHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChH
Confidence 99999876666664 99999999988874 247789999999999999999999874 679999999999999
Q ss_pred ccC
Q 025563 224 LNG 226 (251)
Q Consensus 224 ~~~ 226 (251)
+.-
T Consensus 312 MlL 314 (443)
T COG3048 312 MLL 314 (443)
T ss_pred HHH
Confidence 863
|
|
| >PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.5 Score=38.25 Aligned_cols=120 Identities=17% Similarity=0.113 Sum_probs=72.5
Q ss_pred HHHHHHHHHHCCCcEE-EEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 90 GIGLAFIAALRGYKLI-IVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 90 g~alA~~a~~~G~~~~-ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
|..+.++++.+|.++. -+...+.-...++.+...+-.|.++++. .....+.+..+.+++|+.-.+..++.+.+.. -
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~-~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDEE-E 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCChh-h
Confidence 4788999999998873 3333344455666777888999999985 3445556677778887765554333333221 2
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEE
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGV 216 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigV 216 (251)
...+..+|-+ ..||.|+++.|+---= -.....+..-+..=+++|
T Consensus 90 ~~~i~~~I~~---~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 90 EEAIINRINA---SGPDIVFVGLGAPKQE-RWIARHRQRLPAGVIIGV 133 (172)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE
Confidence 3333333332 4689999999988632 223334433343345555
|
Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process |
| >cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.6 Score=35.22 Aligned_cols=121 Identities=21% Similarity=0.169 Sum_probs=71.5
Q ss_pred HHHHHHHHHHCCCcEEEEecC-CCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPS-IASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
|..+.++++.+|.+..--++. +.-..-++.+...+.+|..+++. .+...+.++.+.+++|+.-.+...+.+...+ .
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~-~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE-E 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-h
Confidence 477889999999883323322 22344566667778999999874 3344445567778887765543333333322 1
Q ss_pred HhhHHHHHhhhhC-CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeC
Q 025563 169 YETTGPEIWKDSG-GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEP 218 (251)
Q Consensus 169 ~~t~~~EI~~q~~-~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep 218 (251)
.. +|.++++ ..||.|+++.|+---= -.+...++..+..-+++|-.
T Consensus 88 ~~----~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 88 EE----EIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HH----HHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEece
Confidence 12 2444443 3699999999987632 33444444444455666643
|
E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan. |
| >TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family | Back alignment and domain information |
|---|
Probab=89.40 E-value=4 Score=33.31 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=65.4
Q ss_pred HHHHHHHHHHCCCcEEEEecC-CCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPS-IASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
|..+.++++.+|.+..--++. +.-...++.....|..|.++++. -....+.++.+.+++|+.-.+.. +.+...+ -
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~-~ 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE-E 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCChH-H
Confidence 367888999998764322222 12234455566778899999874 33445556777778876543321 2222221 1
Q ss_pred HhhHHHHHhhhhC-CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEE
Q 025563 169 YETTGPEIWKDSG-GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGV 216 (251)
Q Consensus 169 ~~t~~~EI~~q~~-~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigV 216 (251)
. .+|.+++. ..+|.|+|+.|+=-== -...-.+...+..-++||
T Consensus 89 ~----~~i~~~I~~s~~dil~VglG~PkQE-~~~~~~~~~~~~~v~~gv 132 (177)
T TIGR00696 89 R----KAALAKIARSGAGIVFVGLGCPKQE-IWMRNHRHLKPDAVMIGV 132 (177)
T ss_pred H----HHHHHHHHHcCCCEEEEEcCCcHhH-HHHHHhHHhCCCcEEEEe
Confidence 1 23444442 3599999999976521 112223333444455665
|
The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=88.71 E-value=9.1 Score=31.85 Aligned_cols=51 Identities=31% Similarity=0.378 Sum_probs=42.0
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+|...+|+.|..++.+....+.++.+++... +....+.++..|++++..+-
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence 6777889999999999999999999998766 55667778889999986653
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=88.45 E-value=3.8 Score=30.66 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
|......|+.+|.+++++. .++.+++.++.+||+.+....
T Consensus 3 G~~a~q~ak~~G~~vi~~~---~~~~k~~~~~~~Ga~~~~~~~ 42 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATD---RSEEKLELAKELGADHVIDYS 42 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHTTESEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEE---CCHHHHHHHHhhccccccccc
Confidence 4555556666673333332 234566666667765555443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.33 E-value=5.8 Score=35.47 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=44.0
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
...+++|++.+|.+.+|.-|....-.|+.+|...++.+ .+..+.+.++.+||+.+.--
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~---~s~~k~~~~~~lGAd~vi~y 194 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVV---SSSEKLELLKELGADHVINY 194 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEe---cCHHHHHHHHhcCCCEEEcC
Confidence 45567788888888899999999999999998444433 23466669999999776653
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.22 E-value=4.1 Score=36.41 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=40.9
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.+|.+.+|. ++|..|...+..++.+|.+++++.+...++.+++.++.+|++.+
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 456664444 67999999999999999976665554456789999999999864
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.16 E-value=10 Score=34.69 Aligned_cols=56 Identities=29% Similarity=0.352 Sum_probs=42.5
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
.+..+.+|++.+| ..+|..|.+++..|+.+|.+.+++. +..+.+++..+.+|++.+
T Consensus 179 ~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 179 VTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCETV 234 (393)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeEE
Confidence 3445667777555 6779999999999999999876644 234678999999999853
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.12 E-value=5.8 Score=35.12 Aligned_cols=88 Identities=25% Similarity=0.262 Sum_probs=61.2
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHH
Q 025563 42 RIAAKLEMMEP-----CCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASME 115 (251)
Q Consensus 42 ~i~~K~E~~~p-----tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~ 115 (251)
+-++|.++.-| |-+.---.|+-|+.+-.+-. +|+..+--+..+--|+++--.|+.+|++.+-++... ..++
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 46778777554 44566667888888866543 355422223334456777778999999999998654 4456
Q ss_pred HHHHHHHcCCEEEEeCC
Q 025563 116 RRIVLRALGAEVYLADQ 132 (251)
Q Consensus 116 ~~~~~~~~Ga~v~~v~~ 132 (251)
..++++.+||+-++.+.
T Consensus 201 l~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHcCCceEecHH
Confidence 67789999999998864
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.93 E-value=22 Score=31.68 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=46.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+|--|.++|....+.|.+++++..... .....+.++..|++++.+..+ .+.++..+.+.+..++.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 45688888899999999999999998777654321 122345566778887655432 24444444445444443
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=86.84 E-value=18 Score=32.11 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
.+..+.+|++ |+..++|..|.+++.+++.+|.+++ ++ +.++.+++.++.+|++.+..
T Consensus 160 ~~~~~~~g~~-VlV~G~G~vG~~a~~~a~~~G~~vi-~~--~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 160 VQAGLKKGDL-VIVIGAGGVGGYMVQTAKAMGAAVV-AI--DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCeEE-EE--cCCHHHHHHHHHhCCceEec
Confidence 3444667777 4545559999999999999999643 33 33567888889999975543
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=86.79 E-value=10 Score=33.05 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=43.3
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+...+.+|++.+|...+|..|.++.-.|+.+|.+++++. .++.+.+.++.+|++-+.-.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeC
Confidence 345567778866666679999999999999999854443 34578888888998654443
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.00 E-value=10 Score=33.61 Aligned_cols=75 Identities=28% Similarity=0.336 Sum_probs=55.4
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEe-cCCCcHHHHHHHHHcC-CEEEEeCCCCChHHHHHHHHHHhhcCC
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVM-PSIASMERRIVLRALG-AEVYLADQAGGFEGILRKGEEILSNTP 151 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivv-p~~~~~~~~~~~~~~G-a~v~~v~~~~~~~~~~~~a~~~~~~~~ 151 (251)
.|+..+|+.+++-.|+++|.--+++|-+.+++= ...-..+..+.++..| ++-..|+-+ +.++..+.+++..++.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 356668888888999999999999998555442 2233466777788777 455666665 67888999999988873
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.67 E-value=7.3 Score=33.57 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=40.0
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
..+|++ ++...+|..|...+..++.+|.+.++++ +.++.+++.++.+|++.+.
T Consensus 118 ~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 118 DLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 346777 4555679999999999999999855555 4456788889999996544
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=84.89 E-value=6.3 Score=34.98 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=43.3
Q ss_pred cCCCCCCCeEEEEecc---ChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEeC
Q 025563 71 KGLITPGKSVLIETTG---GNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ss---GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~ 131 (251)
.|.++ |.+ |...+. +|.++++..+++++|++++++.|+.. ++..++.++..|+++...+
T Consensus 145 ~g~l~-g~~-va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 145 FGRLD-GLK-IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred hCCCC-CCE-EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 45443 344 444444 69999999999999999999999864 4555666777788877664
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=19 Score=34.63 Aligned_cols=51 Identities=24% Similarity=0.198 Sum_probs=40.9
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+++..+.|+.|+.+|..-++.|.+++++ + .++++.+.++..|.+++.-+..
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvI-d--~d~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVI-E--TSRTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEE-E--CCHHHHHHHHHCCCeEEEcCCC
Confidence 4888999999999999999999987665 2 3356788888888888777664
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.84 E-value=19 Score=32.25 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=53.4
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCCCCh-HHHHHHHHHHhhcCCCeEecC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGF-EGILRKGEEILSNTPNGFMFR 157 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 157 (251)
+++.+++|..|.-.|+.=-..-=+.++++...+ ...-.+..+.+|++|..|+.+..- ..-....+.+++..|+.+|+-
T Consensus 70 tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~ 149 (385)
T KOG2862|consen 70 TFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVT 149 (385)
T ss_pred eEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEE
Confidence 388888888776655543333233333333333 445577889999999999653111 112334566677778889988
Q ss_pred CCCCCchHH
Q 025563 158 QFENPANPK 166 (251)
Q Consensus 158 ~~~n~~~~~ 166 (251)
+.+....+.
T Consensus 150 hgdsSTgV~ 158 (385)
T KOG2862|consen 150 HGDSSTGVL 158 (385)
T ss_pred ecCcccccc
Confidence 877665543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.76 E-value=14 Score=30.54 Aligned_cols=67 Identities=25% Similarity=0.149 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCCEEE
Q 025563 58 DRIALSMIKDAEEK---GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGAEVY 128 (251)
Q Consensus 58 ~R~a~~~l~~a~~~---g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~v~ 128 (251)
-++..+.+..+.+. +.--.|++ ++..+.||.|..+|......|.++++ .+. +..+++.+ ..+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~-v~I~G~G~vG~~~A~~L~~~G~~Vvv-~D~--~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKT-VAVQGLGKVGYKLAEHLLEEGAKLIV-ADI--NEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEE-EcC--CHHHHHHHHHHcCCEEE
Confidence 36777777777665 33223444 88888899999999999999998774 332 34444444 33476543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.61 E-value=12 Score=31.48 Aligned_cols=72 Identities=25% Similarity=0.280 Sum_probs=45.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+|.-|.++|......|.+++++-.........+.++..|.++..+ +-. +.++..+...+..++.
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLE-TYAGAQAAMAAAVEAF 82 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCC-CHHHHHHHHHHHHHHc
Confidence 45688888899999999999999998776644322223344555667776544 332 4445555555554443
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.47 E-value=9.7 Score=33.93 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCCEEEE
Q 025563 60 IALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGAEVYL 129 (251)
Q Consensus 60 ~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~ 129 (251)
.|++.+ ++-|..++|++.+|++.+|--|.-+.-.|+..|.+++-++. .++|.+.+.. +|-+...
T Consensus 137 TAY~gL---l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 137 TAYFGL---LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHHHHH---HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 444444 34577778999899999999999999999999999888764 3578888877 6655543
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.90 E-value=6.7 Score=35.20 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=52.1
Q ss_pred HHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 67 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+|-+++.+++|.+ ++..+.|--|...-.+|+.+|-+=++++ +..+.+++..+.+||+++.-..
T Consensus 160 HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 160 HACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeecc
Confidence 4556677778877 8999999999999999999999888877 5567899999999999876543
|
|
| >PRK15408 autoinducer 2-binding protein lsrB; Provisional | Back alignment and domain information |
|---|
Probab=82.72 E-value=35 Score=30.49 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC--------C---cHHH---H--HH-HHHcC-
Q 025563 63 SMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI--------A---SMER---R--IV-LRALG- 124 (251)
Q Consensus 63 ~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~--------~---~~~~---~--~~-~~~~G- 124 (251)
..+..+.+++. .-.++.....+........++..|+|++.+-... + .... . +. .+.+|
T Consensus 71 ~~i~~li~~~v----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~~ 146 (336)
T PRK15408 71 QLINNFVNQGY----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGK 146 (336)
T ss_pred HHHHHHHHcCC----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcCC
Confidence 56666777765 2324433334433445555778899988774321 0 0111 1 11 22333
Q ss_pred --CEEEEeCCCCC---hHHHHHHHHH-HhhcCCCeEecC-CCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHH
Q 025563 125 --AEVYLADQAGG---FEGILRKGEE-ILSNTPNGFMFR-QFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTV 197 (251)
Q Consensus 125 --a~v~~v~~~~~---~~~~~~~a~~-~~~~~~~~~~~~-~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~ 197 (251)
.+|..+.+..+ ..++.+-.++ +.+++|+.-.+. ++.+.. ...++. ...++++.- +++|.|+++ +...+
T Consensus 147 g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d-~~~a~~-~~~~lL~~~-pdi~aI~~~--~~~~~ 221 (336)
T PRK15408 147 DKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYND-ATKSLQ-TAEGILKAY-PDLDAIIAP--DANAL 221 (336)
T ss_pred CCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCc-HHHHHH-HHHHHHHHC-CCCcEEEEC--CCccH
Confidence 57755543211 1222232333 334556655554 233322 222433 444555543 678999987 33344
Q ss_pred HHHHHHHHhhCC-CcEEEEEeC
Q 025563 198 TGSGRFLKEKNP-NIKVYGVEP 218 (251)
Q Consensus 198 ~Gi~~~~~~~~~-~~~vigVep 218 (251)
.|+..++++.+. ++.|+|++-
T Consensus 222 ~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 222 PAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred HHHHHHHHhCCCCCEEEEEeCC
Confidence 588899988653 688899874
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=82.67 E-value=19 Score=30.11 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=34.5
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-HHHHHHHHcCCEEEEeC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-ERRIVLRALGAEVYLAD 131 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~v~ 131 (251)
++.+|+.++|.-|.++|....+.|.+++++....... .....++..+.++..+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3458888889999999999999999876664332111 22233444565655443
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=82.66 E-value=23 Score=34.56 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=40.3
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+++.++.|..|+.+|..-...|++++++ +.++.+++.++.+|.+++.=|..
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVL---ERDISAVNLMRKYGYKVYYGDAT 452 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhCCCeEEEeeCC
Confidence 4888999999999999999999998665 33467788888888777666553
|
|
| >PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 | Back alignment and domain information |
|---|
Probab=82.55 E-value=23 Score=32.59 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=68.0
Q ss_pred EEeccC-hHHHHHHHHHHHCCCcEEEEec-CCCc----HHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHhhcCCCeE
Q 025563 82 IETTGG-NTGIGLAFIAALRGYKLIIVMP-SIAS----MERRIVLRALGA-EVYLADQAGGFEGILRKGEEILSNTPNGF 154 (251)
Q Consensus 82 v~~ssG-N~g~alA~~a~~~G~~~~ivvp-~~~~----~~~~~~~~~~Ga-~v~~v~~~~~~~~~~~~a~~~~~~~~~~~ 154 (251)
+.+|+| .+...+.+...+.+++++.|.- -..+ ....+....+|| +++.++....|. .+.+....+. +..
T Consensus 2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA~ 77 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NAL 77 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T--
T ss_pred eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HHH
Confidence 445555 4566667777777789888762 2222 344556788999 999997632111 1222222222 233
Q ss_pred ecCCC---CCCchHHHHHhhHHHHHhhhhCCCCCEEEE-ecCchhHHHHHHHHHHhhCCCcEEEE
Q 025563 155 MFRQF---ENPANPKIHYETTGPEIWKDSGGDVDILVA-GIGTGGTVTGSGRFLKEKNPNIKVYG 215 (251)
Q Consensus 155 ~~~~~---~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~-~vGtGg~~~Gi~~~~~~~~~~~~vig 215 (251)
|-+.| ....++. ......|+.++. ..++|.. |+|.|--..=.-.+++...|+.+|++
T Consensus 78 Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 78 YEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred hCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 33332 1223332 223334666665 4688887 66888888888888898899988874
|
3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C .... |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=82.46 E-value=23 Score=34.74 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=42.6
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+++.++.|..|+.+|..-++.|++++++ +.++.+++.++.+|.+++.=|..
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC
Confidence 4899999999999999999999998776 44567888888899888777664
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=82.27 E-value=19 Score=32.41 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=41.6
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...+.+|++.+| ..+|..|.+++..++.+|.+.++.+ +.++.+++.++.+|++.+..
T Consensus 185 ~~~~i~~g~~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~ 242 (371)
T cd08281 185 NTAGVRPGQSVAV-VGLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATATVN 242 (371)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceEeC
Confidence 3445667777555 4578999999999999999644444 33567888889999965443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.27 E-value=15 Score=32.53 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=39.7
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
..+|++.+| .++|..|.+....++.+|.+.++.+. .++.+++.++.+||+.+.-
T Consensus 167 ~~~g~~VlV-~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 167 DLQGKRVFV-SGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVN 220 (343)
T ss_pred CCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEec
Confidence 345677455 45799999999999999996555553 3467888899999976543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.13 E-value=38 Score=30.48 Aligned_cols=51 Identities=25% Similarity=0.301 Sum_probs=42.8
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCCEEEEeCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGAEVYLADQ 132 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~v~~ 132 (251)
+++...+|.-|...+.+++.+|...+|++ +.++.+++..+. .|++++..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 48999999999999999999999999988 556788888877 6777766654
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=82.08 E-value=21 Score=31.19 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=43.1
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+.+.+.+|++.+|...+|--|.+++..|+..|.++++... ++.+.+.++.+|++.+.-
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4455677887566666799999999999999997554432 456888889999965544
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=81.77 E-value=19 Score=32.17 Aligned_cols=57 Identities=26% Similarity=0.218 Sum_probs=41.4
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+.+|++.+|. ++|-.|.+++..|+.+|.+.++.+ +.++.+++.++.+|++-+.
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEE
Confidence 34556677875555 578999999999999998755555 3346788888999996443
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=81.48 E-value=27 Score=30.94 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=43.0
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...+.+|.+.+| ..+|..|.+++..|+.+|.+.++.+.. ++.+...++.+|++.+..
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~ 225 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLN 225 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEec
Confidence 4455667777555 667999999999999999887666544 356778888899865543
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.23 E-value=18 Score=30.51 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=46.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..+|.-|.++|..-...|.+++++......+...+.+...+.++..+..+ .+.++..+.+++..++.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355688888899999999999999999888765522223334455566665444321 24444444555555443
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.01 E-value=20 Score=30.69 Aligned_cols=67 Identities=24% Similarity=0.241 Sum_probs=45.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhh
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILS 148 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~ 148 (251)
++.+|+..+|.-|.++|......|.+++++... ..+++.+...+.+.+.++-. +.++..+...+..+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~-d~~~~~~~~~~~~~ 71 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA-EPESIAALVAQVLE 71 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC-CHHHHHHHHHHHHH
Confidence 455888888999999999998899987776533 34555566667777777654 44444444444433
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.86 E-value=23 Score=30.14 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=46.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~ 149 (251)
++.+|+.++|.-|.++|......|.+++++... ..+++.+...+.+.+.++-. +.++..+..++..++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 455888888999999999998899988776543 34455555567777777654 444444445555444
|
|
| >PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A | Back alignment and domain information |
|---|
Probab=80.83 E-value=2.4 Score=38.58 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=58.0
Q ss_pred HHHHcC-CEEEEeCCCCCh---HHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCch
Q 025563 119 VLRALG-AEVYLADQAGGF---EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194 (251)
Q Consensus 119 ~~~~~G-a~v~~v~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtG 194 (251)
.++.+| .++.+|+. || .+.-+.++++.++.++...-..| -|..- .-+..+..+|.+. +||.|+..+. |
T Consensus 128 ~~~~~G~~r~~lvGS--dYv~pre~Nri~r~~l~~~GgevvgE~Y-~plg~-td~~~ii~~I~~~---~Pd~V~stlv-G 199 (363)
T PF13433_consen 128 LLENFGAKRFYLVGS--DYVYPRESNRIIRDLLEARGGEVVGERY-LPLGA-TDFDPIIAEIKAA---KPDFVFSTLV-G 199 (363)
T ss_dssp HHHHS--SEEEEEEE--SSHHHHHHHHHHHHHHHHTT-EEEEEEE-E-S-H-HHHHHHHHHHHHH---T-SEEEEE---T
T ss_pred HHhccCCceEEEecC--CccchHHHHHHHHHHHHHcCCEEEEEEE-ecCCc-hhHHHHHHHHHhh---CCCEEEEeCc-C
Confidence 467889 99999987 44 35667778888877544322111 11111 2344555555543 5886555554 4
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccccccCC
Q 025563 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFFSFWPF 251 (251)
Q Consensus 195 g~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~ 251 (251)
.......+.+++. |.+|+.+|.++- .-++..+..||....--.+..|||
T Consensus 200 ~s~~aF~r~~~~a-------G~~~~~~Pi~S~-~~~E~E~~~~g~~~~~Gh~~~~~Y 248 (363)
T PF13433_consen 200 DSNVAFYRAYAAA-------GLDPERIPIASL-STSEAELAAMGAEAAAGHYTSAPY 248 (363)
T ss_dssp TCHHHHHHHHHHH-------H-SSS---EEES-S--HHHHTTS-HHHHTT-EEEES-
T ss_pred CcHHHHHHHHHHc-------CCCcccCeEEEE-ecCHHHHhhcChhhcCCcEEeehh
Confidence 5566888888876 355555554442 233345556655333333444443
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.67 E-value=18 Score=30.40 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=46.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..++--|+++|....+.|.+++++.... .+...+.++..|.+++.+ +-. +.++..+..++..++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLI-QQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCC-CHHHHHHHHHHHHHHc
Confidence 35568888889999999999999999987764332 233345566677776544 432 4445555555554443
|
|
| >TIGR01064 pyruv_kin pyruvate kinase | Back alignment and domain information |
|---|
Probab=80.44 E-value=53 Score=31.09 Aligned_cols=123 Identities=13% Similarity=0.133 Sum_probs=71.8
Q ss_pred HHHHHHHHCCCcEEEEe-----------cCCCcHHHHHHHHHcCCEEEEeCCCC---Ch-HHHHHHHHHHhhcCCCeE--
Q 025563 92 GLAFIAALRGYKLIIVM-----------PSIASMERRIVLRALGAEVYLADQAG---GF-EGILRKGEEILSNTPNGF-- 154 (251)
Q Consensus 92 alA~~a~~~G~~~~ivv-----------p~~~~~~~~~~~~~~Ga~v~~v~~~~---~~-~~~~~~a~~~~~~~~~~~-- 154 (251)
.+..+|+.+|.++.+.. |.-.....+......|++.+...... .| -++.+...+++++....+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 45667889999988754 22234455666677899998886531 12 345554444433221111
Q ss_pred ---ecCCCC-C---CchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 155 ---MFRQFE-N---PANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 155 ---~~~~~~-n---~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
|-.+.. . ....+ .....+.++.+.+ +.++||+.+-||.++--+++ ..|.+.|+++.|...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~-~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITE-AIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHH-HHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 111100 0 01121 3344455666665 46899999999999655444 478899999987654
|
This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.34 E-value=13 Score=33.64 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=46.8
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
++.+..+.+|+. |.....|-.|+...-+|+.+|.+++.+ +.++.|++..+.+||+.+....
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 344455677776 777777878887788888899777776 4567899999999999888754
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.32 E-value=23 Score=29.81 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=45.8
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|.-|.++|....+.|.+++++ .........+.++..+.++..+..+ .+.++..+..++..++
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999987765 3333344556666667666554332 2344444444444443
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=80.25 E-value=25 Score=31.01 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=41.8
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH-cCCEEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA-LGAEVYL 129 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~ 129 (251)
...+++|++.+|...+|.-|.+++..|+.+|.++++.. .+..+.+.++. +|++-+.
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCceeE
Confidence 35567788867776679999999999999999854443 23577888887 9986443
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.13 E-value=14 Score=31.15 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=47.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+.++|.-|.++|......|.+++++...+.. ....+.++..|.+++.+..+ .+.++..+.+.+..++.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 345888888999999999999999988776544322 23345667778776654321 24444555555555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 251 | ||||
| 1z7w_A | 322 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 3e-81 | ||
| 2isq_A | 320 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 4e-81 | ||
| 4aec_A | 430 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 4e-81 | ||
| 1z7y_A | 322 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-80 | ||
| 3vbe_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase In | 4e-73 | ||
| 3vc3_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase K95 | 2e-72 | ||
| 2q3d_A | 313 | 2.2 A Resolution Crystal Structure Of O-acetylserin | 3e-52 | ||
| 2q3b_A | 313 | 1.8 A Resolution Crystal Structure Of O-Acetylserin | 1e-51 | ||
| 3rr2_A | 314 | Structure Of A Cysteine Synthase (O-Acetylserine Su | 2e-49 | ||
| 4i1y_A | 314 | The Structure Of Cysteine Synthase From Mycobacteri | 6e-49 | ||
| 2egu_A | 308 | Crystal Structure Of O-Acetylserine Sulfhydrase Fro | 1e-47 | ||
| 4air_A | 354 | Leishmania Major Cysteine Synthase Length = 354 | 1e-44 | ||
| 1oas_A | 322 | O-Acetylserine Sulfhydrylase From Salmonella Typhim | 2e-44 | ||
| 3t4p_A | 334 | Crystal Structure Of O-Acetyl Serine Sulfhydrylase | 4e-44 | ||
| 1d6s_A | 322 | Crystal Structure Of The K41a Mutant Of O-Acetylser | 9e-44 | ||
| 1ve1_A | 304 | Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh | 5e-43 | ||
| 2bhs_A | 303 | Crystal Structure Of Cysteine Synthase B Length = 3 | 2e-40 | ||
| 2jc3_A | 303 | Structure Of O-acetylserine Sulfhydrylase B From Sa | 6e-40 | ||
| 2bht_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase B | 7e-40 | ||
| 2v03_A | 303 | High Resolution Structure And Catalysis Of An O- Ac | 1e-39 | ||
| 1y7l_A | 316 | O-Acetylserine Sulfhydrylase Complex Length = 316 | 5e-36 | ||
| 3pc2_A | 527 | Full Length Structure Of Cystathionine Beta-Synthas | 5e-36 | ||
| 1m54_A | 363 | Cystathionine-Beta Synthase: Reduced Vicinal Thiols | 2e-35 | ||
| 1jbq_A | 435 | Structure Of Human Cystathionine Beta-Synthase: A U | 3e-35 | ||
| 3fca_A | 291 | Genetic Incorporation Of A Metal-Ion Chelating Amin | 5e-35 | ||
| 1o58_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase ( | 7e-35 | ||
| 3dwg_A | 325 | Crystal Structure Of A Sulfur Carrier Protein Compl | 9e-33 | ||
| 3dwi_A | 323 | Crystal Structure Of Mycobacterium Tuberculosis Cys | 4e-32 | ||
| 3dki_A | 326 | 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobac | 4e-32 | ||
| 3bm5_A | 338 | Crystal Structure Of O-Acetyl-Serine Sulfhydrylase | 2e-28 | ||
| 2pqm_A | 343 | Crystal Structure Of Cysteine Synthase (Oass) From | 3e-28 | ||
| 1wkv_A | 389 | Crystal Structure Of O-Phosphoserine Sulfhydrylase | 5e-08 | ||
| 3vsc_A | 389 | Crystal Structure Of The K127a Mutant Of O-Phosphos | 2e-07 |
| >pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322 | Back alignment and structure |
|
| >pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320 | Back alignment and structure |
|
| >pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430 | Back alignment and structure |
|
| >pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322 | Back alignment and structure |
|
| >pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313 | Back alignment and structure |
|
| >pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313 | Back alignment and structure |
|
| >pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314 | Back alignment and structure |
|
| >pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314 | Back alignment and structure |
|
| >pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308 | Back alignment and structure |
|
| >pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354 | Back alignment and structure |
|
| >pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322 | Back alignment and structure |
|
| >pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334 | Back alignment and structure |
|
| >pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322 | Back alignment and structure |
|
| >pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304 | Back alignment and structure |
|
| >pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303 | Back alignment and structure |
|
| >pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303 | Back alignment and structure |
|
| >pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303 | Back alignment and structure |
|
| >pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex Length = 316 | Back alignment and structure |
|
| >pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527 | Back alignment and structure |
|
| >pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363 | Back alignment and structure |
|
| >pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435 | Back alignment and structure |
|
| >pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291 | Back alignment and structure |
|
| >pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303 | Back alignment and structure |
|
| >pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex Found In The Cysteine Biosynthetic Pathway Of Mycobacterium Tuberculosis Length = 325 | Back alignment and structure |
|
| >pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The Cysteine Synthase B Length = 323 | Back alignment and structure |
|
| >pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium Tuberculosis An O-Phosphoserine Dependent Cysteine Synthase Length = 326 | Back alignment and structure |
|
| >pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From Entamoeba Histolytica In Complex With Cysteine Length = 338 | Back alignment and structure |
|
| >pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From Entamoeba Histolytica At 1.86 A Resolution Length = 343 | Back alignment and structure |
|
| >pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Length = 389 | Back alignment and structure |
|
| >pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine Sulfhydrylase Complexed With External Schiff Base Of Pyridoxal 5'-Phosphate With O- Phospho-L-Serine Length = 389 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 251 | |||
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 1e-144 | |
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 1e-143 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 1e-141 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 1e-140 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 1e-134 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 1e-131 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 1e-130 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 1e-129 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 1e-124 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 1e-122 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 1e-115 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 1e-109 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 1e-109 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 1e-108 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 4e-16 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 3e-15 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 4e-15 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 4e-15 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 5e-15 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 3e-14 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 4e-14 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 2e-13 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 4e-13 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 8e-13 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 8e-13 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 5e-12 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 1e-11 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 2e-11 |
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322 | Back alignment and structure |
|---|
Score = 404 bits (1040), Expect = e-144
Identities = 150/215 (69%), Positives = 179/215 (83%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI SMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+SVLIE T GNTG+GLAF AA +GYKLII MP+ S ERRI+L A G E+ L D A G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G + K EEIL+ TPNG+M +QFENPANPKIHYETTGPEIWK +GG +D V+GIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG+G++LKE+N N+K+YGVEP ESA+L+GG+PG
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 219
|
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430 | Back alignment and structure |
|---|
Score = 406 bits (1046), Expect = e-143
Identities = 148/215 (68%), Positives = 177/215 (82%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I + +QLIG TPMVYLN++ GCVA IAAKLE+MEPCCSVKDRI SM+ DAE+KG I+
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKSVL+E T GNTGIGLAFIAA RGY+LI+ MP+ SMERR++L+A GAE+ L D A G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
G ++K EEIL NTP+ +M +QF+NPANPKIHYETTGPEIW D+ G VDI VAGIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG GRF+KEKNP +V GVEPTES +L+GG+PG
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPG 327
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-141
Identities = 96/215 (44%), Positives = 141/215 (65%), Gaps = 1/215 (0%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
+ + QLIG TP +YLN + + A++ K+E P SVKDR+ ++ AE++G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 69
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PGKS+++E++ GNTG+ LA + A+RGYK+II MP S+ERR +LR GAEV L A G
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G + ++I++ PN + QF N IH ETTGPEIW+ + +VD +AG+GTGG
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG R LK+ + ++ VEPTES +L+GG+PG
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPG 224
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-140
Identities = 109/216 (50%), Positives = 146/216 (67%), Gaps = 1/216 (0%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
+I +D TQLIG TP+V L V DG VA I AKLE P SVKDRI ++M++ AE+ GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
P ++++E T GNTGI LA + A RGY+ ++ MP S+ERR++LRA GAE+ L A
Sbjct: 65 KPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194
G G + K EE+ F+ +QFENPANP IH TT E+W+D+ G VDI+VAG+GTG
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GT+TG + +KE+ P+ + VEP S +L+GGQ G
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKG 219
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304 | Back alignment and structure |
|---|
Score = 379 bits (976), Expect = e-134
Identities = 104/211 (49%), Positives = 136/211 (64%), Gaps = 2/211 (0%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK-S 79
IG TP+V L VV+ +A + KLE + P S+KDR A MIKDAEE+G++ PG
Sbjct: 4 EGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQ 63
Query: 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGI 139
V++E T GNTGIGLA IAA RGY+LI+ MP+ S ER+ VL+A GAE+ L D
Sbjct: 64 VIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAA 123
Query: 140 LRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTG 199
+ L FM QF+NPAN + HYETTGPE+++ G +D V G GTGGT+TG
Sbjct: 124 REEALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITG 182
Query: 200 SGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GR+LKE+ P++KV VEP S +L+GG+ G
Sbjct: 183 VGRYLKERIPHVKVIAVEPARSNVLSGGKMG 213
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-131
Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 5/219 (2%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
AI D + IGNTP+V L + G + K+E P SVK RI +M+ AE+ G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
T GK +++ T GNTGI LA++AA RGYK+ + MP S+ER+ +L LG + L + A
Sbjct: 60 TKGK-EIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 135 GFEGILRKGEEILSNTPNGF-MFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGT 193
G +G + K EEI+++ P+ + M +QFENPANP+IH ETTGPEIWKD+ G VD++VAG+GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 194 GGTVTGSGRFLK-EKNPNIKVYGVEPTESAMLNGGQPGR 231
GG++TG R +K + I VEP ES +++ G
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGE 217
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308 | Back alignment and structure |
|---|
Score = 370 bits (952), Expect = e-130
Identities = 111/215 (51%), Positives = 146/215 (67%), Gaps = 2/215 (0%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
T+LIG+TP V LN +VD A + KLE M P SVKDRIAL+MI+ AE+ G +
Sbjct: 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG ++E T GNTGIGLA +AA +GYK ++VMP S+ERR +LRA GAE+ L A G
Sbjct: 64 PG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
G + K EE++ FM +QF+N ANP+IH TTG EI + G +D VAG+GTGG
Sbjct: 123 MRGAIAKAEELVR-EHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG+G+ L+E PNIK+Y VEP +S +L+GG+PG
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPG 216
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343 | Back alignment and structure |
|---|
Score = 368 bits (946), Expect = e-129
Identities = 88/220 (40%), Positives = 127/220 (57%), Gaps = 7/220 (3%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCV----ARIAAKLEMMEPCCSVKDRIALSMIKDAEEK 71
I + + IG TP+V L+ V + RI KLE P SVKDR+ +++ A +
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131
G + PG +IE+T GNTGI L A+ GY++ I MPS S+ER+++++A GAE+ L +
Sbjct: 73 GRLKPGM-EIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131
Query: 132 QAGGFEGILRKGEEILSNTPNG-FMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAG 190
G G + + +++ P F+ QF NP N H+ T EIW+D+ G+VDI+V+
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVVSA 190
Query: 191 IGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
+GT GTV G LKEK IK+ VEP ESA+L G G
Sbjct: 191 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKG 230
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303 | Back alignment and structure |
|---|
Score = 355 bits (913), Expect = e-124
Identities = 94/212 (44%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK 78
Q IGNTP+V L + + + KLE P SVKDR ALSMI +AE++G I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
Query: 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG 138
VLIE T GNTGI LA IAAL+GY++ ++MP S ERR +RA GAE+ L + G EG
Sbjct: 63 -VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVT 198
E+ + G + QF NP NP HY TTGPEIW+ +GG + V+ +GT GT+T
Sbjct: 122 ARDLALEMANRGE-GKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 199 GSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
G RF++E++ + + G++P E + + G +
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRW 212
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-122
Identities = 99/225 (44%), Positives = 131/225 (58%), Gaps = 9/225 (4%)
Query: 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66
M + +LIG+TP+V L+++ +RI KLE P SVKDR AL MI
Sbjct: 1 MGSDKIHHHHHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMIL 56
Query: 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAE 126
DAE++GL+ G ++E T GN GI +A I A RG+++I+ MP S+ERR VL+ LGAE
Sbjct: 57 DAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAE 113
Query: 127 VYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDI 186
+ L G +G + K EI M QFENP N H TTGPEI K +D
Sbjct: 114 LVLTPGELGMKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDA 172
Query: 187 LVAGIGTGGTVTGSGRFLKEK-NPNIKVYGVEPTESAMLNGGQPG 230
VAG+GTGGT++G GR LK +K+ VEP +S +L+GGQPG
Sbjct: 173 FVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPG 217
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325 | Back alignment and structure |
|---|
Score = 331 bits (850), Expect = e-115
Identities = 87/215 (40%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Query: 15 AIKKDATQLIGNTPMVYLNNVV-------DGCVARIAAKLEMMEPCCSVKDRIALSMIKD 67
Q +GNTP+V L + DG R+ AKLE P S+KDR A+ MI+
Sbjct: 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQ 63
Query: 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127
AE GL+ PG + ++E T GNTGI LA A L+GY+LI VMP S+ERR +L GA++
Sbjct: 64 AEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQI 122
Query: 128 YLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDIL 187
+ GG + +E+ + P+ M Q+ NPAN HY TGPE+ D +
Sbjct: 123 IFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLPE-ITHF 181
Query: 188 VAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
VAG+GT GT+ G+GRFL+E N+K+ EP
Sbjct: 182 VAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE 216
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 | Back alignment and structure |
|---|
Score = 323 bits (830), Expect = e-109
Identities = 90/225 (40%), Positives = 127/225 (56%), Gaps = 11/225 (4%)
Query: 16 IKKDATQLIGNTPMVYLNNVV--DGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
I + ++IG TP+V LNN+ DG + AK E + P SVKDRI M++DAEE+GL
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133
+ PG +IE T GNTGIGLA A++GYK IIVMP S E+ LR LGA++
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 134 GGF---EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAG 190
+ EG++ +++ TPN + Q+ N NP HY+ T EI VD++V
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 191 IGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAM-----LNGGQPG 230
GT GT++G GR +KE+ P+ ++ GV+P S + LN
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQ 273
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435 | Back alignment and structure |
|---|
Score = 320 bits (822), Expect = e-109
Identities = 96/225 (42%), Positives = 127/225 (56%), Gaps = 11/225 (4%)
Query: 16 IKKDATQLIGNTPMVYLNNVV--DGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
I D + IG+TPMV +N + G + AK E SVKDRI+L MI+DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL---A 130
+ PG +IE T GNTGIGLA AA+RGY+ IIVMP S E+ VLRALGAE+
Sbjct: 158 LKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 216
Query: 131 DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAG 190
+ E + + + PN + Q+ N +NP HY+TT EI + G +D+LVA
Sbjct: 217 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276
Query: 191 IGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAM-----LNGGQPG 230
+GTGGT+TG R LKEK P ++ GV+P S + LN +
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQT 321
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 316 bits (813), Expect = e-108
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 9/214 (4%)
Query: 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPC-CSVKDRIALSMIKDAEEKGLITPG 77
D + TP+V + R+ KLE P SVKDR A+ +I + + G
Sbjct: 89 DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE 137
S++ + T N G+ L+ +A L GY+ + +P A +++ R LGA+V + +A
Sbjct: 146 -SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 138 GILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGD---VDILVAGIGTG 194
+L + + S QF N AN + H T EI+ S + + +GT
Sbjct: 205 HLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 195 GTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQ 228
G ++ + +L+ +P+I+ V+P + + G +
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIR 297
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 4e-16
Identities = 46/216 (21%), Positives = 80/216 (37%), Gaps = 43/216 (19%)
Query: 24 IGNTPMVY---LNNVVDGCVARIAAKLEMMEPCCSVKDRIA----LSMIKDAEEKGLITP 76
TP++ +N A + K E + + K R A + + + G++T
Sbjct: 24 ANKTPVLTSSTVNKEFV---AEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLT- 79
Query: 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGF 136
+ GN +A A + G I+MP A + + G +V + D+
Sbjct: 80 -------FSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--K 130
Query: 137 EGILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDI 186
+ + +EI G I Y+ T E++++ G +D
Sbjct: 131 DDREKMAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVG-PLDA 177
Query: 187 LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
L +G GG ++GS + PN +VYGVEP
Sbjct: 178 LFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGN 213
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-15
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 25/142 (17%)
Query: 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEI 146
GN G L + A L G IV+P A +++ ++A GA + + + E + +
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRENVAKRV 142
Query: 147 LSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDILVAGIGTGGT 196
T + +H + T E+ VD LV +G GG
Sbjct: 143 TEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVP-LVDALVVPVGGGGM 189
Query: 197 VTGSGRFLKEKNPNIKVYGVEP 218
+ G +K P++KVY EP
Sbjct: 190 LAGIAITVKALKPSVKVYAAEP 211
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-15
Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 43/228 (18%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK---DAEEKG 72
L TP+ + + K++ +P S K R K
Sbjct: 36 FMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAH 95
Query: 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA-- 130
+ + GN G+ A+ A G IV+P L+ GA +
Sbjct: 96 FVCS--------SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE 147
Query: 131 --DQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWK 178
D+A + + N P G+++ I ++ + E+ +
Sbjct: 148 LLDEA------FELAKALAKNNP-GWVY----------IPPFDDPLIWEGHASIVKELKE 190
Query: 179 DSGGDVDILVAGIGTGGTVTGSGRFLKE-KNPNIKVYGVEPTESAMLN 225
+ +G GG + G + L+E ++ V +E + +
Sbjct: 191 TLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFH 238
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 4e-15
Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE 137
K TT GN G G+A+ A G +I MP ++ ER + LGAE + D ++
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD--MNYD 169
Query: 138 GILRKGEEILSNTPNGFMFRQFENPANPKIH------YETTGPEIW---KDSGGDVDILV 188
+R + + + + KI Y T E ++ G ++
Sbjct: 170 DTVRLTMQ-HAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVL 228
Query: 189 AGIGTGGTVTGSGRFLKE--KNPNIKVYGVEPTESA 222
G G G +L + N+ VEP ++
Sbjct: 229 LQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKAD 264
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 5e-15
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 42/213 (19%)
Query: 27 TPMVY---LNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAE-EKGLITPGKSVLI 82
TP++ L+ ++ R+ K E ++ S K R ALS E KGL+
Sbjct: 21 TPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA------- 70
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRK 142
+ GN G+A+ A + G K ++VMP AS ++ RA GAEV +
Sbjct: 71 -VSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEV 127
Query: 143 GEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIW---KDSGGDVDILVA 189
+ T G+ IH ++ T G E+ G ++A
Sbjct: 128 ARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLA 175
Query: 190 GIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
+G GG + G +K +P V GVEP +
Sbjct: 176 PVGGGGLLAGLATAVKALSPTTLVLGVEPEAAD 208
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-14
Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 44/221 (19%)
Query: 23 LIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK---DAEEKGLITPGKS 79
TP++ + + K E ++P S K R + + L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVCS--- 60
Query: 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGG 135
+GGN GI A+ A G IV+P S++ L+ GAEV L D+A
Sbjct: 61 -----SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEA-- 113
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGG-DV 184
+ +E+ G+ + ++ + E+
Sbjct: 114 ----NLRAQELAKRD--GWEN----------VPPFDHPLIWKGHASLVQELKAVLRTPPG 157
Query: 185 DILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225
+++A G G L+ ++ + +E + N
Sbjct: 158 ALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFN 198
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 2e-13
Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 11/180 (6%)
Query: 25 GNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82
GN+ + + + + K + S KD ++ + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPS-IASMERRIVLRALGAEVYLADQAGGFEGILR 141
+ G+T L+ A G I+ +P+ SM + + A GA V D F+G ++
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSID--TDFDGCMK 246
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIH-YETTGPEIWKDSGGDV-DILVAGIGTGGTVTG 199
EI + N ++ +T EI + V D ++ G G +
Sbjct: 247 LIREITAE--LPIYLANSLNSL--RLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYA 302
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 4e-13
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 13/166 (7%)
Query: 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGF 136
+ + + GN G+ + ++A G+K+ + M + A ++ LR+ G V + +
Sbjct: 159 SQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYE--QDY 216
Query: 137 EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEI---WKDSGGDVD-----ILV 188
+ +G + + PN F F EN + Y G + + G VD +
Sbjct: 217 GVAVEEGRKAAQSDPNCF-FIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVY 275
Query: 189 AGIGTGGTVTGSGRFLKEK-NPNIKVYGVEPTESA-MLNGGQPGRL 232
G GG G LK ++ + EPT S ML G G
Sbjct: 276 LPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLH 321
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 8e-13
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 24/209 (11%)
Query: 25 GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIET 84
G TP++ N+ I K+E + P S KDR + DA G ++VL +
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ----RAVLCAS 92
Query: 85 TGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILRKG 143
T GNT A AA G +++P +M + GA++ D G F+ L
Sbjct: 93 T-GNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID--GNFDDCLELA 149
Query: 144 EEILSNTPNGFMFRQFENPANPKIH--YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSG 201
++ ++ P N NP +T EI G D+ +G G +T
Sbjct: 150 RKMAADFPTIS----LVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205
Query: 202 RFLKE--------KNPNIKVYGVEPTESA 222
+ E K P ++ G + +A
Sbjct: 206 KGYTEYHQLGLIDKLP--RMLGTQAAGAA 232
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 8e-13
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 25/210 (11%)
Query: 25 GNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82
GNTP++ +N+ G +I K E + P S KDR I A E G ++V+
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK----RAVIC 84
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILR 141
+TG NT A AA G + +++P A ++ + GA+V G F+ L
Sbjct: 85 ASTG-NTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ--GTFDDALN 141
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIH-YETTGPEIWKDSGGDVDILVAGIGTGGTVTGS 200
+I N NP +I +T EI G D +G G +T
Sbjct: 142 IVRKIGEN--FPVEIVNSVNPY--RIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAY 197
Query: 201 GRFLKE--------KNPNIKVYGVEPTESA 222
+ K K P ++ G + +A
Sbjct: 198 WKGFKIYYEEGKITKLP--RMMGWQAEGAA 225
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 5e-12
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 45/214 (21%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMI----KDAEEKGLITPGKSVLI 82
+P+ + D K E + S K R A +M+ ++ +KG+IT
Sbjct: 61 SPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT------- 113
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGGFEG 138
+ GN G+A IVMP+ + +RALG +V L D+A
Sbjct: 114 -ASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEA--QTH 170
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDILV 188
L E+ +G + I ++ T G EI + D+ +
Sbjct: 171 ALELSEK------DGLKY----------IPPFDDPGVIKGQGTIGTEINRQLK-DIHAVF 213
Query: 189 AGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
+G GG + G F K+ PN K+ GVEP +A
Sbjct: 214 IPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAA 247
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-11
Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 27/211 (12%)
Query: 25 GNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82
G+TP++ L + R+ AK E + P S KDR + A E G ++V
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA----QAVAC 82
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPS-IASMERRIVLRALGAEVYLADQAGGFEGILR 141
+TG NT A AA G I+V+P+ ++ + GA + + G F+ LR
Sbjct: 83 ASTG-NTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE--GNFDDALR 139
Query: 142 KGEEILSNTPNGFMFRQFENPANPKIH--YETTGPEIWKDSGGDVDILVAGIGTGGTVTG 199
+++ P + N NP +T E+ + G +G G +T
Sbjct: 140 LTQKLTEAFPVALV-----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194
Query: 200 SGRFLKE--------KNPNIKVYGVEPTESA 222
K + P ++ G + +A
Sbjct: 195 HWMGYKAYHALGKAKRLP--RMLGFQAAGAA 223
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 45/214 (21%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK--DAEE--KGLITPGKSVLI 82
TP+ + + I K E +P S K R A +M+ E+ G+IT
Sbjct: 32 TPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT------- 84
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA----DQAGGFEG 138
+ GN G+AF +A G K +IVMP+ + + +R G EV L D+A
Sbjct: 85 -ASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEA--KAK 141
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIH-YE---------TTGPEIWKDSGGDVDILV 188
+ ++ GF + + ++ T E+ + +D +
Sbjct: 142 AIELSQQ------QGFTW----------VPPFDHPMVIAGQGTLALELLQQDA-HLDRVF 184
Query: 189 AGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESA 222
+G GG G +K+ P IKV VE +SA
Sbjct: 185 VPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA 218
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 251 | |||
| 3vc3_A | 344 | Beta-cyanoalnine synthase; beta-cyanoalanine synth | 100.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 100.0 | |
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 100.0 | |
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 100.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 100.0 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 100.0 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 100.0 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 100.0 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 100.0 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 100.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 100.0 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 100.0 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 100.0 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 100.0 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 100.0 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 100.0 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 100.0 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 100.0 | |
| 4h27_A | 364 | L-serine dehydratase/L-threonine deaminase; PLP de | 100.0 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 100.0 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 100.0 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 100.0 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 100.0 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 100.0 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 100.0 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 100.0 | |
| 1j0a_A | 325 | 1-aminocyclopropane-1-carboxylate deaminase; PLP d | 100.0 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 100.0 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 100.0 | |
| 4d9b_A | 342 | D-cysteine desulfhydrase; fold type II PLP-depende | 100.0 | |
| 1f2d_A | 341 | 1-aminocyclopropane-1-carboxylate deaminase; carbo | 100.0 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 100.0 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 100.0 | |
| 1x1q_A | 418 | Tryptophan synthase beta chain; structural genomic | 100.0 | |
| 1qop_B | 396 | Tryptophan synthase beta chain; lyase, carbon-oxyg | 100.0 | |
| 1v8z_A | 388 | Tryptophan synthase beta chain 1; beta+alpha, rike | 100.0 | |
| 2o2e_A | 422 | Tryptophan synthase beta chain; amino-acid biosynt | 100.0 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 100.0 | |
| 1vb3_A | 428 | Threonine synthase; PLP-dependent enzyme, lyase; H | 100.0 | |
| 1kl7_A | 514 | Threonine synthase; threonine synthesis, pyridoxal | 99.97 | |
| 4f4f_A | 468 | Threonine synthase; structural genomics, niaid, na | 99.97 | |
| 3v7n_A | 487 | Threonine synthase; ssgcid, structural genomics, s | 99.97 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.15 | |
| 1vp8_A | 201 | Hypothetical protein AF0103; putative pyruvate kin | 93.42 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.62 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.13 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.09 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 91.91 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 91.81 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.09 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.86 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 90.54 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 90.45 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.08 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 90.0 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 89.87 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 89.84 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 89.66 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 89.66 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.42 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 89.19 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 88.25 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 87.91 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 87.84 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 87.8 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 87.77 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 87.72 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 87.62 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 87.52 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 87.36 | |
| 1t57_A | 206 | Conserved protein MTH1675; structural genomics, FM | 87.24 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 87.21 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 87.14 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 86.95 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 86.89 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 86.62 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 86.58 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 86.3 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 86.04 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 86.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 85.86 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 85.75 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 85.48 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 85.29 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 85.19 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 85.15 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 85.04 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 84.8 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 84.69 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 84.59 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 84.3 | |
| 3l6u_A | 293 | ABC-type sugar transport system periplasmic compo; | 84.22 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 84.1 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 84.08 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 83.98 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 83.82 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 83.72 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 83.58 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 83.4 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 83.38 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 83.31 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 83.28 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 83.02 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 82.52 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 82.4 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 82.36 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 81.89 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 81.75 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 81.72 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 81.57 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 81.49 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 81.43 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 81.36 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 81.16 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 80.79 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 80.74 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 80.73 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 80.48 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 80.43 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 80.32 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 80.29 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 80.18 |
| >3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-56 Score=396.75 Aligned_cols=232 Identities=56% Similarity=0.950 Sum_probs=215.6
Q ss_pred HHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLA 94 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA 94 (251)
.+++.|.+.||+|||+++++|++.+|++||+|+|++|||||||+|++.+++.+|.++|.+.+|..+||++|+||||.|+|
T Consensus 24 ~i~~~i~~lIG~TPLv~~~~Ls~~~G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA 103 (344)
T 3vc3_A 24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMA 103 (344)
T ss_dssp SCBSSGGGGSCCCCEEECCSTTTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHH
T ss_pred hhhccHhhhcCCCceEECcccchhhCCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHH
Confidence 35667999999999999999999999999999999999999999999999999999999888877799999999999999
Q ss_pred HHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 95 FIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 95 ~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
++|+++|++|+||||++++..|+++++.+||+|+.++...++.++...+.++..+.++.+|++||+||.++.+||.|++.
T Consensus 104 ~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~ 183 (344)
T 3vc3_A 104 FMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGP 183 (344)
T ss_dssp HHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEECCCTTTCHHHHHHHHHTHHH
T ss_pred HHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHhhccCceeccccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999987545556666666666666799999999999999889999999
Q ss_pred HHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 175 EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
||++|+++.+|+||+|+|+||+++|++.++++.+|++||++|||.+|+++.++.++++.++|+|.++.|.+.
T Consensus 184 EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVep~~s~~l~~~~~~~~~i~g~g~~~~~~~~ 255 (344)
T 3vc3_A 184 EIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDIL 255 (344)
T ss_dssp HHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTC
T ss_pred HHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEEcCCCChhhcCCCCCCeeEecccccccCccc
Confidence 999999889999999999999999999999999999999999999999999999999999999999887653
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=387.96 Aligned_cols=235 Identities=41% Similarity=0.696 Sum_probs=220.1
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChH
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNT 89 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~ 89 (251)
+.++..+++++...+++|||++++++ +.+|.+||+|+|++||+||||+|++.+++.++.++|.+++|.+.||++|+|||
T Consensus 5 ~~~i~~~~~~i~~~ig~TPL~~l~~l-~~~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~ 83 (334)
T 3tbh_A 5 FDKSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNT 83 (334)
T ss_dssp CCTTTSCCSSGGGGSSCCCEEECCTT-CCSSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHH
T ss_pred hhhHHHHHHHHHHhcCCCCeEECCcc-cCCCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHH
Confidence 67778888999999999999999999 77889999999999999999999999999999999988888764599999999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
|+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++.++++|++||+|+.|+..||
T Consensus 84 g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~np~n~~~g~ 163 (334)
T 3tbh_A 84 GVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHE 163 (334)
T ss_dssp HHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCchHHHHHHHHHHHhCCCEEECCccCChhHHHHHH
Confidence 99999999999999999999999999999999999999999875568899999999988877899999999999888899
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
.+++.||++|+++.+|+||+|+|+||+++|++.++++.+|++||+||||++|+++..+.+.++.++||+.+++|..
T Consensus 164 ~t~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~gi~~~~~~~~ 239 (334)
T 3tbh_A 164 ETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDV 239 (334)
T ss_dssp HTHHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEETTSCTTTTCCCCCCSCTTSCCSSCCTT
T ss_pred HHHHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEeeCCchHhhCCCcCCeecCCCCCCcCCHH
Confidence 9999999999977899999999999999999999999999999999999999999888888999999999887754
|
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-54 Score=393.00 Aligned_cols=231 Identities=65% Similarity=1.066 Sum_probs=217.4
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
+++++.+.+++|||++++++++.+|.+||+|+|++||+||||+|++.+++.++.++|.+.+|..+||++|+||||+|+|+
T Consensus 113 ~~~~i~~~ig~TPLv~l~~Ls~~~g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~ 192 (430)
T 4aec_A 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF 192 (430)
T ss_dssp CBSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHH
T ss_pred hhhhhhccCCCCCeEEChhhhhhcCCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHH
Confidence 45788999999999999999998899999999999999999999999999999999998888667999999999999999
Q ss_pred HHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHH
Q 025563 96 IAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 175 (251)
+|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++.++.+|++||+|+.++.+||.+++.|
T Consensus 193 aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~T~a~E 272 (430)
T 4aec_A 193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE 272 (430)
T ss_dssp HHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEEECCTTTCTHHHHHHHHTHHHH
T ss_pred HHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCChHHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865568899999999998877899999999999976799999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
|++|+.+.+|+||+|+|+||+++|++.++++.+|++||+||||++++++.++.++++.++|||.+++|..+
T Consensus 273 I~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep~~s~~l~~g~~~~~~i~Gl~~~~~p~~l 343 (430)
T 4aec_A 273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNL 343 (430)
T ss_dssp HHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTC
T ss_pred HHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEeCCCcHhhCCCccceeehhccCCCCcHHH
Confidence 99999778999999999999999999999999999999999999999999889999999999999887643
|
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-53 Score=375.40 Aligned_cols=229 Identities=66% Similarity=1.077 Sum_probs=213.2
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
+++++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.++|.++++..+||++|+||||+|+|+
T Consensus 5 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~ 84 (322)
T 1z7w_A 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAF 84 (322)
T ss_dssp CCSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHH
T ss_pred hhhHHHHhcCCCCeEECccccccCCceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHH
Confidence 35678899999999999999988889999999999999999999999999999999988877656999999999999999
Q ss_pred HHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHH
Q 025563 96 IAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 175 (251)
+|+++|++|+||||.+++..|+++++.+||+|+.+++..+++++.+.+++++++.++.+|++||+|+.++..||.|++.|
T Consensus 85 aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~E 164 (322)
T 1z7w_A 85 TAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPE 164 (322)
T ss_dssp HHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHH
T ss_pred HHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875457889999999998877899999999999987799999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCF 244 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~ 244 (251)
|++|+++++|+||+|+|+||+++|++.+|++.+|++||++|||++|+++.++.++++.++||+.+.+|.
T Consensus 165 i~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~ 233 (322)
T 1z7w_A 165 IWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPS 233 (322)
T ss_dssp HHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCT
T ss_pred HHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEecCCCccccCCCCCCcccCcCcCCCCCh
Confidence 999997789999999999999999999999999999999999999999988888888899999887664
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-52 Score=366.96 Aligned_cols=229 Identities=48% Similarity=0.772 Sum_probs=211.2
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
+++++...+++|||+++++|++..|.+||+|+|++||+||||+|++.+++..+.++|.+++|.+ ||++|+||||+|+|+
T Consensus 6 ~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~-vv~assGN~g~alA~ 84 (313)
T 2q3b_A 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTI-ILEPTSGNTGIALAM 84 (313)
T ss_dssp CCSSGGGGSCCCCEEECSSSCTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCE-EEEECSSHHHHHHHH
T ss_pred hhhhHHHhcCCCceEECcccccccCcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCCHHHHHHHH
Confidence 3577889999999999999988888999999999999999999999999999999998777665 999999999999999
Q ss_pred HHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHH
Q 025563 96 IAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 175 (251)
+|+++|++|+||||..++..|+++++.+||+|+.++...+++++.+.+++++++.+..+++++|+|+.+++.||.|++.|
T Consensus 85 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~~E 164 (313)
T 2q3b_A 85 VCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEE 164 (313)
T ss_dssp HHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHHHH
T ss_pred HHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975468899999999998875558899999999998779999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
|++|+.+++|+||+|+|+||+++|++.++++.+|++||++|||++++++..+.++++.++|++.+++|..
T Consensus 165 i~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~g~~~~~~~~~ 234 (313)
T 2q3b_A 165 VWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPV 234 (313)
T ss_dssp HHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTT
T ss_pred HHHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCcccCCcCCCCCChh
Confidence 9999976799999999999999999999999999999999999999988766777889999998877764
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-52 Score=368.88 Aligned_cols=221 Identities=39% Similarity=0.588 Sum_probs=205.0
Q ss_pred HHHHhhcccCCCcceeccccccc-------CCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDG-------CVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~-------~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
+++++.+.+++|||+++++|++. .|.+||+|+|++||+||||+|++.+++.++.++|.++++.+ ||++|+||
T Consensus 5 ~~~~i~~~ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~~~-vv~aSsGN 83 (325)
T 3dwg_A 5 RYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGAT-ILEPTSGN 83 (325)
T ss_dssp EESSTGGGCSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTTCE-EEEECSSH
T ss_pred cccCHHHhcCCCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcH
Confidence 45778899999999999999887 78899999999999999999999999999999998887766 99999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++.++++|++||+||.++++|
T Consensus 84 ~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~np~~~~~g 163 (325)
T 3dwg_A 84 TGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSH 163 (325)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTHHHHHHHHHHHHHHCTTSBCCCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999997667899999999999888669999999999999779
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
|.+++.||++|++. +|+||+|+|+||+++|++.++++.+|++||+||||++++++ +.+++|+.+++|..
T Consensus 164 ~~t~~~Ei~~q~~~-~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~-------~~~~~i~~~~~~~~ 232 (325)
T 3dwg_A 164 YCGTGPELLADLPE-ITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGV-------YALRNMDEGFVPEL 232 (325)
T ss_dssp HHTHHHHHHHHCTT-CCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEECCGGG-------GCCSSGGGCCCCTT
T ss_pred HHHHHHHHHHhcCC-CCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeCCCcch-------hccCcccCCcCccc
Confidence 99999999999964 99999999999999999999999999999999999999876 45778888887754
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=363.87 Aligned_cols=225 Identities=47% Similarity=0.700 Sum_probs=206.8
Q ss_pred hhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCC-eEEEEeccChHHHHHHHHHH
Q 025563 20 ATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK-SVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 20 v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~-~~vv~~ssGN~g~alA~~a~ 98 (251)
+...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.++|.++++. .+||++|+||||+|+|++|+
T Consensus 3 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~ 82 (304)
T 1ve1_A 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAA 82 (304)
T ss_dssp GGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHH
T ss_pred hHHhcCCCCcEECcccccccCCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHH
Confidence 56789999999999999888999999999999999999999999999999999877665 14999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||.+++..|+++++.+||+|+.++...+++++.+.+++++++ ++++|++||+|+.+++.+|.+++.||++
T Consensus 83 ~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~n~~~~~g~~~t~~~Ei~~ 161 (304)
T 1ve1_A 83 SRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEE-LGAFMPDQFKNPANVRAHYETTGPELYE 161 (304)
T ss_dssp HHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH-HTCBCCCTTTCHHHHHHHHHTHHHHHHH
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHhc-CCCEeCCCCCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999864588999999999887 4889999999999997458999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
|+...+|+||+|+|+||+++|++.++++.+|++||++|||++++.+.++.++++.++||+.+.+|..
T Consensus 162 q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~g~~~~~~~~gl~~~~~~~~ 228 (304)
T 1ve1_A 162 ALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPEN 228 (304)
T ss_dssp HTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTT
T ss_pred HcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCcccCCCCCCCCChh
Confidence 9976799999999999999999999999999999999999999988877788889999999877753
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-51 Score=361.52 Aligned_cols=219 Identities=42% Similarity=0.681 Sum_probs=202.1
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
+++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.++|.++++.+ ||++|+||||+|+|++|
T Consensus 2 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g~~-vv~~ssGN~g~a~A~~a 80 (303)
T 2v03_A 2 STLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIA 80 (303)
T ss_dssp CSGGGGSSCCCEEECSSSSCSSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCE-EEEECSSHHHHHHHHHH
T ss_pred cchHhhcCCCCcEECcccccccCCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCE-EEEECCcHHHHHHHHHH
Confidence 46788899999999999998889999999999999999999999999999999998777655 99999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHh
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIW 177 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~ 177 (251)
+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++.+++ |++||+|+.++++||.+++.||+
T Consensus 81 ~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~ 159 (303)
T 2v03_A 81 ALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIW 159 (303)
T ss_dssp HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHHH
T ss_pred HHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999997657899999999998885577 99999999998779999999999
Q ss_pred hhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 178 KDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 178 ~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
+|+...+|+||+|+|+||+++|++.++++.+|++||++|||++++++.+ ++|++.+.+|..
T Consensus 160 ~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~-------~~gl~~~~~~~~ 220 (303)
T 2v03_A 160 QQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGI 220 (303)
T ss_dssp HHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTT-------CCCCCGGGCCTT
T ss_pred HHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCCCCccccc-------CCcCCCCCCCcc
Confidence 9997679999999999999999999999999999999999999988763 788888877754
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-52 Score=366.42 Aligned_cols=227 Identities=49% Similarity=0.767 Sum_probs=177.0
Q ss_pred HHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFI 96 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 96 (251)
++++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.++|.+++|.+ ||++|+||||+|+|++
T Consensus 5 ~~~i~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~-vv~assGN~g~a~A~~ 83 (308)
T 2egu_A 5 VNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT-IVEPTSGNTGIGLAMV 83 (308)
T ss_dssp CSCGGGGSSCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCE-EEEECCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEECCcccccCCCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCCHHHHHHHHH
Confidence 567889999999999999998889999999999999999999999999999999998777655 9999999999999999
Q ss_pred HHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHH
Q 025563 97 AALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEI 176 (251)
Q Consensus 97 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI 176 (251)
|+++|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++. +++++++|+|+.++.+||.+++.||
T Consensus 84 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei 162 (308)
T 2egu_A 84 AAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGAIAKAEELVREH-GYFMPQQFKNEANPEIHRLTTGKEI 162 (308)
T ss_dssp HHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCC--------------CHHHHH
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHHC-cCCcCCcCCChhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987545789999999998887 4588899999998867999999999
Q ss_pred hhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 177 WKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 177 ~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
++|+.+.+|+||+|+|+||+++|++.++++.+|++||++|||++++++..+.++++.++|++.+++|..
T Consensus 163 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (308)
T 2egu_A 163 VEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDI 231 (308)
T ss_dssp HHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEECC-----------------------CC
T ss_pred HHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeCCCccccCCCCCCcccCccCCCCCCHh
Confidence 999976799999999999999999999999999999999999999888877777889999998877653
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-52 Score=366.37 Aligned_cols=226 Identities=43% Similarity=0.697 Sum_probs=205.0
Q ss_pred HHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFI 96 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 96 (251)
++++...+++|||+++++| + .|.+||+|+|++||+||||+|++.+++.++.++|.++++.+ ||++|+||||+|+|++
T Consensus 4 ~~~i~~~~~~TPL~~l~~l-~-~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~~~-vv~~ssGN~g~a~A~~ 80 (316)
T 1y7l_A 4 YADNSYSIGNTPLVRLKHF-G-HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKE-IVDATSGNTGIALAYV 80 (316)
T ss_dssp CSSGGGGCCCCCEEECSSS-S-STTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCE-EEESCCSHHHHHHHHH
T ss_pred hhhhHHhcCCCCcEECccC-C-CCCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHHH
Confidence 5678899999999999999 6 88899999999999999999999999999999998776655 9999999999999999
Q ss_pred HHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCe-EecCCCCCCchHHHHHhhHHHH
Q 025563 97 AALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNG-FMFRQFENPANPKIHYETTGPE 175 (251)
Q Consensus 97 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~n~~~~~~g~~t~~~E 175 (251)
|+++|++|+||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.++. +|++||+|+.++++||.+++.|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 160 (316)
T 1y7l_A 81 AAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPE 160 (316)
T ss_dssp HHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHH
T ss_pred HHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987545889999999998887666 8899999999988789999999
Q ss_pred HhhhhCCCCCEEEEecCchhHHHHHHHHHHhhC-CCcEEEEEeCCCCccccCC------CCCceeecccCCcccccc
Q 025563 176 IWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKN-PNIKVYGVEPTESAMLNGG------QPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 176 I~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~-~~~~vigVep~~s~~~~~~------~~~~~~i~g~g~~~~~~~ 245 (251)
|++|+...+|+||+|+|+||+++|++.++++.+ |++||++|||++++++... ...++.++||+.+++|..
T Consensus 161 i~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~~~~~~~gi~~~~~~~~ 237 (316)
T 1y7l_A 161 IWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKN 237 (316)
T ss_dssp HHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTT
T ss_pred HHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEEecCCCccccccccCCccCCCCcccCcCCCCCCCch
Confidence 999997669999999999999999999999998 9999999999999876531 145778999999877753
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=368.41 Aligned_cols=228 Identities=39% Similarity=0.622 Sum_probs=210.1
Q ss_pred HHHHhhcccCCCcceecccccc----cCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVD----GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGI 91 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~----~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~ 91 (251)
+++++...+++|||+++++|++ ..|.+||+|+|++||+||||+|++.+++..+.++|.+++|.+ ||++|+||||+
T Consensus 13 ~~~~i~~~~g~TPL~~~~~l~~~~~~~~g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g~~-vv~aSsGN~g~ 91 (343)
T 2pqm_A 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGME-IIESTSGNTGI 91 (343)
T ss_dssp EESSGGGGSSCCCEEECCGGGCSTTSCTTCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTTCE-EEEECSSHHHH
T ss_pred HHHHHHhhcCCCCeEECCccccccccccCcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCE-EEEECCcHHHH
Confidence 4678899999999999999988 778999999999999999999999999999999998777655 99999999999
Q ss_pred HHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCe-EecCCCCCCchHHHHHh
Q 025563 92 GLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNG-FMFRQFENPANPKIHYE 170 (251)
Q Consensus 92 alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~n~~~~~~g~~ 170 (251)
|+|++|+++|++|+||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.++. ++++||+|+.++.+||.
T Consensus 92 alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g~~ 171 (343)
T 2pqm_A 92 ALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHY 171 (343)
T ss_dssp HHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTTEEECCTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEECCCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999987545889999999998887555 77899999999877999
Q ss_pred hHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 171 TTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 171 t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
+++ ||++|+.+.+|+||+|+|+||+++|++.++++.+|++||+||||++++.+.++..+++.++||+.+++|..
T Consensus 172 t~~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 245 (343)
T 2pqm_A 172 TAN-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDI 245 (343)
T ss_dssp HHH-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCTTTTCCCCCCCCTTCCCSSCCTT
T ss_pred HHH-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCCCcccccCCCCCeecCccCCCCCCHH
Confidence 999 99999976799999999999999999999999999999999999999988877788889999998877643
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-51 Score=366.21 Aligned_cols=215 Identities=23% Similarity=0.284 Sum_probs=196.4
Q ss_pred cccccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 025563 4 EASMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIE 83 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~ 83 (251)
+..|.++++|..+++++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.+.|....... ||+
T Consensus 3 ~~~~~~~~~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~-vv~ 81 (346)
T 3l6b_A 3 AQYDISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKA-VVT 81 (346)
T ss_dssp CCCSSCHHHHHHHHHHHGGGSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CCCSC-EEE
T ss_pred cccCCCHHHHHHHHHHHhcccCCCCeEEchhhHHHhCCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccCCCE-EEE
Confidence 4567789999999999999999999999999998889999999999999999999999999999988764433344 999
Q ss_pred eccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCc
Q 025563 84 TTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPA 163 (251)
Q Consensus 84 ~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~ 163 (251)
+|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +.+|+++++|+.
T Consensus 82 ~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~l~~~~-~~~~i~~~~np~ 158 (346)
T 3l6b_A 82 HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SDESRENVAKRVTEET-EGIMVHPNQEPA 158 (346)
T ss_dssp ECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECS--SHHHHHHHHHHHHHHH-TCEECCSSSCHH
T ss_pred eCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCChH
Confidence 9999999999999999999999999999999999999999999999987 5889999999998887 789999999999
Q ss_pred hHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 164 NPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 164 ~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
+++ ||.|++.||++|+ +.+|+||+|+|+||+++|++.++++.+|++||+||||++++++
T Consensus 159 ~~~-g~~t~~~Ei~~q~-~~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~ 217 (346)
T 3l6b_A 159 VIA-GQGTIALEVLNQV-PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDC 217 (346)
T ss_dssp HHH-HHHHHHHHHHHHS-TTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHH
T ss_pred HHH-HHHHHHHHHHHhC-CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCCHHH
Confidence 884 9999999999999 5799999999999999999999999999999999999999764
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-50 Score=354.01 Aligned_cols=219 Identities=46% Similarity=0.657 Sum_probs=201.0
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
-+...+++|||+++++++ .+||+|+|++||+||||+|++.+++.++.++|.++++ ||++|+||||+|+|++|+
T Consensus 13 ~~~~~~~~TPL~~l~~l~----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~~---vv~aSsGN~g~a~A~aa~ 85 (303)
T 1o58_A 13 MMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGA 85 (303)
T ss_dssp HHHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTC---EEEECSSHHHHHHHHHHH
T ss_pred hhhhccCCCCeEECccCC----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCCC---EEEECchHHHHHHHHHHH
Confidence 366789999999999876 5899999999999999999999999999998875544 999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||++++..|+++++.+||+|+.+++..+|+++.+.+++++++. +++|++||+|+.++++||.+++.||++
T Consensus 86 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 164 (303)
T 1o58_A 86 KRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILK 164 (303)
T ss_dssp HHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHHH
T ss_pred HcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhc-CeEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987545889999999998887 788899999999987799999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCC-cEEEEEeCCCCccccCCCCCceeecccCCcccccc
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPN-IKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~-~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~ 245 (251)
|+.+.+|+||+|+|+||+++|++.++++.+|+ +||++|||++++++..+.++++.++||+.+.+|..
T Consensus 165 q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~~~~~~~~~g~~~~~~~~gi~~~~~~~~ 232 (303)
T 1o58_A 165 QMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKI 232 (303)
T ss_dssp HTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTT
T ss_pred HcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEecCCCccccCCCCCCeecCcCCCCCcCHH
Confidence 99766999999999999999999999999999 99999999999999888888889999998877643
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=362.31 Aligned_cols=229 Identities=41% Similarity=0.608 Sum_probs=202.4
Q ss_pred HHHHhhcccCCCcceecccccccCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGL 93 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~al 93 (251)
+++++...+++|||+++++|++.+| ++||+|+|++||+||||+|++.+++.++.++|.++++.+ ||++|+||||+|+
T Consensus 98 ~~~~i~~~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g~t-VV~aSsGN~G~Al 176 (435)
T 1jbq_A 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDT-IIEPTSGNTGIGL 176 (435)
T ss_dssp EESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCE-EEEECSSHHHHHH
T ss_pred HHHHHHhhCCCCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCCHHHHHH
Confidence 4567888999999999999988877 699999999999999999999999999999998887766 9999999999999
Q ss_pred HHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHH---HHHHHHHHhhcCCCeEecCCCCCCchHHHHHh
Q 025563 94 AFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG---ILRKGEEILSNTPNGFMFRQFENPANPKIHYE 170 (251)
Q Consensus 94 A~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 170 (251)
|++|+++|++|+||||+.++..|+++++.+||+|+.++...++++ +.+.+++++++.++.||++||+|+.|+.+||.
T Consensus 177 A~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~~ 256 (435)
T 1jbq_A 177 ALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYD 256 (435)
T ss_dssp HHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHHH
Confidence 999999999999999999999999999999999999986544554 45678888888767889999999998878999
Q ss_pred hHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc-----CCCCCceeecccCCcccccc
Q 025563 171 TTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN-----GGQPGRLLFFLFFLFFFCFF 245 (251)
Q Consensus 171 t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~-----~~~~~~~~i~g~g~~~~~~~ 245 (251)
+++.||++|++..+|+||+|+|+||+++|++.+|++..|++||+||||++++.+. .+...++.++|||.+++|.+
T Consensus 257 t~a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVigVep~gs~~~~~~~l~~~~~~~~~~~gig~~~~~~~ 336 (435)
T 1jbq_A 257 TTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTV 336 (435)
T ss_dssp THHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTT
T ss_pred HHHHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEEEecCCchhhchhhhhcCCCcceeecccccCccchh
Confidence 9999999999767999999999999999999999999999999999999996542 23455678999999888765
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=373.47 Aligned_cols=236 Identities=37% Similarity=0.583 Sum_probs=212.3
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccC
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGG 87 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssG 87 (251)
++.+..+++++...+++|||+++++|++.+| ++||+|+|++||+||||+|++.+++.++.++|.+++|.+ ||++|+|
T Consensus 44 ~~~~~~~~~~i~~~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g~~-vv~~ssG 122 (527)
T 3pc3_A 44 IAHRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYT-IIEPTSG 122 (527)
T ss_dssp CCCCCSSCSSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTTCE-EEEECSS
T ss_pred ccchhhHHhhHHhhcCCCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCCCE-EEEeCCC
Confidence 3345567788999999999999999988877 699999999999999999999999999999999888776 9999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChH---HHHHHHHHHhhcCCCeEecCCCCCCch
Q 025563 88 NTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE---GILRKGEEILSNTPNGFMFRQFENPAN 164 (251)
Q Consensus 88 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~ 164 (251)
|||+|+|++|+++|++|+||||+.++..|+++++.+||+|+.++...+|+ .+.+.+++++++.++.+|++||+|+.|
T Consensus 123 N~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~n 202 (527)
T 3pc3_A 123 NTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGN 202 (527)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCTTSTTSHHHHHHHHHHHSSSEECCCTTTCTHH
T ss_pred HHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCcccHHHHHHHHHHHHHhCCCcEecCCCCCcch
Confidence 99999999999999999999999999999999999999999998754454 367788888888777889999999988
Q ss_pred HHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc-----CCCCCceeecccCC
Q 025563 165 PKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN-----GGQPGRLLFFLFFL 239 (251)
Q Consensus 165 ~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~-----~~~~~~~~i~g~g~ 239 (251)
+.+||.+++.||++|+.+.+|+||+|+|+||+++|++.++++..|++||+||||++|+.+. .+.++++.++|||.
T Consensus 203 ~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~~~~~~gi~~ 282 (527)
T 3pc3_A 203 PLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGY 282 (527)
T ss_dssp HHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEETTCCCSSSGGGGCCSCCCCSCCSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCcccccchhhcCCCCCceeccccCC
Confidence 8889999999999999778999999999999999999999999999999999999997542 24556788999999
Q ss_pred ccccccc
Q 025563 240 FFFCFFF 246 (251)
Q Consensus 240 ~~~~~~~ 246 (251)
+++|..+
T Consensus 283 ~~~p~~~ 289 (527)
T 3pc3_A 283 DFPPTVF 289 (527)
T ss_dssp SSCCTTC
T ss_pred CCCCccc
Confidence 9988653
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-50 Score=355.33 Aligned_cols=232 Identities=21% Similarity=0.251 Sum_probs=201.1
Q ss_pred CCccccccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 1 MVLEASMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
|+.+..|.+++++..+++++...+++|||+++++|++..|.+||+|+|++||+||||+|++.+++..+.+.. +..+
T Consensus 1 ~~~~~~~~~~~~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~----~~~~ 76 (323)
T 1v71_A 1 MSDNLVLPTYDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQ----RKAG 76 (323)
T ss_dssp -----CCCCHHHHHHHHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHH----HHHC
T ss_pred CCCCcCCCCHHHHHHHHHHHhccCCCCCceEhHhhHHHhCCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhc----CCCe
Confidence 455566778999999999999999999999999998888899999999999999999999999997654321 1223
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFE 160 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 160 (251)
||++|+||||+|+|++|+++|++|++|||++++..|+++++.+||+|+.+++. ++++.+.+++++++. +++|++||+
T Consensus 77 vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~l~~~~-~~~~i~~~~ 153 (323)
T 1v71_A 77 VLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREKMAKEISERE-GLTIIPPYD 153 (323)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTT--TTCHHHHHHHHHHHH-TCBCCCSSS
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCC
Confidence 99999999999999999999999999999999999999999999999999874 567888888888876 678899999
Q ss_pred CCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CCC-----Cc
Q 025563 161 NPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG----GQP-----GR 231 (251)
Q Consensus 161 n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~----~~~-----~~ 231 (251)
|+.+++ ||.+++.||++|+. .+|+||+|+|+||+++|++.++++.+|++||+||||++++++.. +.. .+
T Consensus 154 n~~~~~-g~~t~~~Ei~~q~~-~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~ 231 (323)
T 1v71_A 154 HPHVLA-GQGTAAKELFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPK 231 (323)
T ss_dssp SHHHHH-HHTHHHHHHHHHHC-CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCC
T ss_pred Ccchhh-hHhHHHHHHHHhcC-CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEeCCCchHHHHHHcCCceecCCCC
Confidence 999985 99999999999995 79999999999999999999999999999999999999986641 222 24
Q ss_pred eeecccCCcc
Q 025563 232 LLFFLFFLFF 241 (251)
Q Consensus 232 ~~i~g~g~~~ 241 (251)
+..+||+.+.
T Consensus 232 t~a~gl~~~~ 241 (323)
T 1v71_A 232 TIADGAQTQH 241 (323)
T ss_dssp CSCTTSCCSS
T ss_pred cccccccCCC
Confidence 6677887764
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=349.69 Aligned_cols=208 Identities=25% Similarity=0.276 Sum_probs=189.7
Q ss_pred ccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q 025563 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86 (251)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss 86 (251)
|.+++++..+++++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+. + +. +||++|+
T Consensus 1 ~~~~~~i~~a~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~--~----~~-~vv~~ss 73 (311)
T 1ve5_A 1 MPSLQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE--N----PK-GLLAVSS 73 (311)
T ss_dssp -CCHHHHHHHHHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSS--S----CC-CEEEECS
T ss_pred CCCHHHHHHHHHHHhccCCCCCceechhhHHhhCCeEEEEecCCCCcCCcHHHHHHHHHHHhc--C----CC-eEEEECC
Confidence 356889999999999999999999999998888999999999999999999999999998875 2 13 3999999
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHH
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPK 166 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 166 (251)
||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+++
T Consensus 74 GN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~ 150 (311)
T 1ve5_A 74 GNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TAKNREEVARALQEET-GYALIHPFDDPLVIA 150 (311)
T ss_dssp SHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CTTTHHHHHHHHHHHH-CCEECCSSSSHHHHH
T ss_pred CcHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEecCCCCCcchhh
Confidence 9999999999999999999999999999999999999999999987 4788899999988875 789999999999995
Q ss_pred HHHhhHHHHHhhhhC---CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 167 IHYETTGPEIWKDSG---GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~---~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
||.+++.||++|++ +.+|+||+|+|+||+++|++.++++.+|++||++|||++++++.
T Consensus 151 -g~~t~~~Ei~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~ 211 (311)
T 1ve5_A 151 -GQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAK 211 (311)
T ss_dssp -HHHHHHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHH
T ss_pred -hccHHHHHHHHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeCCChHHH
Confidence 99999999999995 67999999999999999999999999999999999999998663
|
| >4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=352.08 Aligned_cols=218 Identities=17% Similarity=0.168 Sum_probs=194.0
Q ss_pred HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHH
Q 025563 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 18 ~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 97 (251)
.+....+++|||+++++|++.+|++||+|+|++||+||||+|++.+++.++.++|. .+||++|+||||+|+|++|
T Consensus 38 ~~~~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~aa 112 (364)
T 4h27_A 38 MSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC-----AHFVCSSSGNAGMAAAYAA 112 (364)
T ss_dssp ---CCSSCCCCEEEEHHHHHHHTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHH
T ss_pred hhcCCCCCcCCeEEChhhHHHhCCEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcCC-----CEEEEeCCChHHHHHHHHH
Confidence 35667889999999999998889999999999999999999999999999988774 3499999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHh
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIW 177 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~ 177 (251)
+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++.++++|++||+|+.+++ ||.+++.||+
T Consensus 113 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~~l~~~~~~~~~~~~~~np~~~~-G~~t~~~Ei~ 189 (364)
T 4h27_A 113 RQLGVPATIVVPGTTPALTIERLKNEGATVKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPLIWE-GHASIVKELK 189 (364)
T ss_dssp HHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECS--STTHHHHHHHHHHHHSTTEEEECSSCSHHHHH-HHTHHHHHHH
T ss_pred HHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhCCCeEEeCCCCCHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999986 68899999999998877899999999999996 9999999999
Q ss_pred hhhCCCCCEEEEecCchhHHHHHHHHHHhhC-CCcEEEEEeCCCCccccC----CCC-----CceeecccCCcccc
Q 025563 178 KDSGGDVDILVAGIGTGGTVTGSGRFLKEKN-PNIKVYGVEPTESAMLNG----GQP-----GRLLFFLFFLFFFC 243 (251)
Q Consensus 178 ~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~-~~~~vigVep~~s~~~~~----~~~-----~~~~i~g~g~~~~~ 243 (251)
+|+++.+|+||+|+|+||+++|++.++++.+ |+++|++|||++++++.. +.+ .....+||+.+.++
T Consensus 190 ~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~ 265 (364)
T 4h27_A 190 ETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVG 265 (364)
T ss_dssp HHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCC
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEEecCCChHHHHHHHCCCcccCCCCCcHHHHhCCCCCc
Confidence 9997679999999999999999999999886 889999999999987642 221 23445677776654
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-48 Score=348.28 Aligned_cols=229 Identities=16% Similarity=0.160 Sum_probs=193.9
Q ss_pred cccccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 025563 4 EASMEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIE 83 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~ 83 (251)
+++|++..+ ..+++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.++|. . +||+
T Consensus 27 ~~~~~ry~~---~~p~~~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~~g~----~-~vv~ 98 (372)
T 1p5j_A 27 GQQMGRGSE---FMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC----A-HFVC 98 (372)
T ss_dssp ----------------CCCSSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTC----C-EEEE
T ss_pred CCccccHHH---hcccccCCCCCCCceEcHhhHHHhCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHcCC----C-EEEE
Confidence 344554443 3445678899999999999988888999999999999999999999999999988763 3 4999
Q ss_pred eccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCc
Q 025563 84 TTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPA 163 (251)
Q Consensus 84 ~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~ 163 (251)
+|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+++++++.++.+|++||+|+.
T Consensus 99 aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~l~~~~~~~~~v~~~~n~~ 176 (372)
T 1p5j_A 99 SSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPL 176 (372)
T ss_dssp CCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHHHHHHHSTTEEECCSSCCHH
T ss_pred eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhcCCcEEeCCCCCHH
Confidence 9999999999999999999999999999999999999999999999987 68999999999988866899999999999
Q ss_pred hHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhC-CCcEEEEEeCCCCccccC----CCC----C-cee
Q 025563 164 NPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKN-PNIKVYGVEPTESAMLNG----GQP----G-RLL 233 (251)
Q Consensus 164 ~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~-~~~~vigVep~~s~~~~~----~~~----~-~~~ 233 (251)
+++ ||.+++.||++|+...+|+||+|+|+||+++|++.++++.+ |++||++|||++|+++.. +.+ + ...
T Consensus 177 ~~~-G~~t~~~Ei~~ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~ti 255 (372)
T 1p5j_A 177 IWE-GHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSV 255 (372)
T ss_dssp HHH-HHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCS
T ss_pred HHh-hHHHHHHHHHHHcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHcCCceecCCCcee
Confidence 996 99999999999997679999999999999999999999986 889999999999987642 221 1 345
Q ss_pred ecccCCcccc
Q 025563 234 FFLFFLFFFC 243 (251)
Q Consensus 234 i~g~g~~~~~ 243 (251)
.+||+.+.++
T Consensus 256 a~gl~~~~~~ 265 (372)
T 1p5j_A 256 AKALGVKTVG 265 (372)
T ss_dssp CGGGCCSSCC
T ss_pred ecccCCCCCC
Confidence 5677776655
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=336.81 Aligned_cols=213 Identities=21% Similarity=0.194 Sum_probs=190.5
Q ss_pred cccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCC
Q 025563 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRG 101 (251)
Q Consensus 22 ~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G 101 (251)
..+.+|||+++++|++.+|.+||+|+|++||+||||+|++.+++.++.++|. . +||++|+||||+|+|++|+++|
T Consensus 3 ~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~----~-~vv~~ssGN~g~alA~~a~~~G 77 (318)
T 2rkb_A 3 PFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGC----R-HLVCSSGGNAGIAAAYAARKLG 77 (318)
T ss_dssp CSSCCCCEEEEHHHHHHHTSCEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC----C-EEEECCCSHHHHHHHHHHHHHT
T ss_pred CCCccCCceehHhhHHHhCCeEEEEecCCCCCCCHHHHHHHHHHHHHHHcCC----C-EEEEECCchHHHHHHHHHHHcC
Confidence 3578999999999988888999999999999999999999999999988763 3 4999999999999999999999
Q ss_pred CcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhC
Q 025563 102 YKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSG 181 (251)
Q Consensus 102 ~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~ 181 (251)
++|+||||+++++.|+++++.+||+|+.+++ +++++.+.+++++++. +.+|++||+|+.+++ ||.+++.||++|+.
T Consensus 78 ~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~ 153 (318)
T 2rkb_A 78 IPATIVLPESTSLQVVQRLQGEGAEVQLTGK--VWDEANLRAQELAKRD-GWENVPPFDHPLIWK-GHASLVQELKAVLR 153 (318)
T ss_dssp CCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHHHHHHHHHHHHHST-TEEECCSSCSHHHHH-HHHHHHHHHHHHSS
T ss_pred CCEEEEECCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCChhhcc-chhHHHHHHHHhcC
Confidence 9999999999999999999999999999987 6899999999998885 899999999999996 99999999999997
Q ss_pred CCCCEEEEecCchhHHHHHHHHHHhhC-CCcEEEEEeCCCCccccC----CCC-----CceeecccCCcccc
Q 025563 182 GDVDILVAGIGTGGTVTGSGRFLKEKN-PNIKVYGVEPTESAMLNG----GQP-----GRLLFFLFFLFFFC 243 (251)
Q Consensus 182 ~~~d~vv~~vGtGg~~~Gi~~~~~~~~-~~~~vigVep~~s~~~~~----~~~-----~~~~i~g~g~~~~~ 243 (251)
..+|+||+|+|+||+++|++.++++.+ |++||++|||++|+++.. +.+ .....+||+.+++|
T Consensus 154 ~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~ 225 (318)
T 2rkb_A 154 TPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVA 225 (318)
T ss_dssp SCCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCC
T ss_pred CCCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccCCCCCC
Confidence 679999999999999999999999885 889999999999987632 221 13456678877665
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=343.01 Aligned_cols=227 Identities=21% Similarity=0.206 Sum_probs=201.2
Q ss_pred ccccchhhHHHH---HHHhhcccCCCcceec--ccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCe
Q 025563 5 ASMEDNHHKRAI---KKDATQLIGNTPMVYL--NNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKS 79 (251)
Q Consensus 5 ~~~~~~~~~~~~---~~~v~~~~~~TPl~~~--~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~ 79 (251)
.+|+++.+.++. .+++.+.+++|||+++ ++|++..|++||+|+|++||+||||+|++.+++.++.++|. .
T Consensus 4 ~~~~ry~~~lp~~~~~~~v~~~~g~TPL~~~~~~~l~~~~g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~~~g~----~- 78 (351)
T 3aey_A 4 PLIERYRNLLPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA----Q- 78 (351)
T ss_dssp CHHHHTGGGTTCCTTSCCCCSCCCCCCEEECCCCHHHHTTTCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC----S-
T ss_pred CcccccHhhCCCcccCCceecCCCCCCeeecCchhhHHHhCCeEEEEecCCCCcccHHHHHHHHHHHHHHhcCC----C-
Confidence 567777777764 2578999999999999 99988889999999999999999999999999999998874 3
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQ 158 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 158 (251)
+||++|+||||+|+|++|+++|++|+||||++ ++..|+++++.+||+|+.+++ +++++.+.+++++++. +.+|+++
T Consensus 79 ~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~ 155 (351)
T 3aey_A 79 AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRLTQKLTEAF-PVALVNS 155 (351)
T ss_dssp EEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-SEEECST
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEecCC
Confidence 49999999999999999999999999999998 999999999999999999997 5899999999998887 5888988
Q ss_pred CCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCccccCCCCC--
Q 025563 159 FENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLNGGQPG-- 230 (251)
Q Consensus 159 ~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~~~~~~-- 230 (251)
+|+.+++ ||.+++.||++|+...+|+||+|+|+||+++|++.++++.++ .+||++|||++++++..+.+.
T Consensus 156 -~n~~~~~-g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~ 233 (351)
T 3aey_A 156 -VNPHRLE-GQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVER 233 (351)
T ss_dssp -TCHHHHH-HHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHHTSCSSCCEEEEEEEGGGCHHHHTSCCSS
T ss_pred -CCcccee-eeeeHHHHHHHHcCCCCCEEEEecCchHHHHHHHHHHHHHHhccccCCCCeEEEEecCCCChhhcCcccCC
Confidence 8999985 999999999999976799999999999999999999998753 699999999999877544432
Q ss_pred -ceeecccCCcc
Q 025563 231 -RLLFFLFFLFF 241 (251)
Q Consensus 231 -~~~i~g~g~~~ 241 (251)
...++||+.+.
T Consensus 234 ~~t~a~gl~~~~ 245 (351)
T 3aey_A 234 PETLATAIRIGN 245 (351)
T ss_dssp CCCSCGGGCCSS
T ss_pred ccchhHhhcCCC
Confidence 34568888765
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=343.32 Aligned_cols=227 Identities=21% Similarity=0.233 Sum_probs=198.7
Q ss_pred cccchhhHHHH---HHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEE
Q 025563 6 SMEDNHHKRAI---KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82 (251)
Q Consensus 6 ~~~~~~~~~~~---~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv 82 (251)
.|+++.+.++. .+++.+.+++|||+++++|++.+|++||+|+|++||+||||+|++.+++.++.++|. .+||
T Consensus 15 ~~~ry~~~lp~~~~~~~v~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~~~g~-----~~vv 89 (360)
T 2d1f_A 15 VIAAYRDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVL 89 (360)
T ss_dssp HHHHTGGGSCCCSSCCCCCCCCCCCCEEECHHHHHHHSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----SEEE
T ss_pred chhhhHHhCCCcccCCccccccCCCCCeechhhHHHhCCeEEEEECCCCCCcCHHHHHHHHHHHHHHHCCC-----CEEE
Confidence 44455555543 246888999999999999988889999999999999999999999999999998874 3499
Q ss_pred EeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCC
Q 025563 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFEN 161 (251)
Q Consensus 83 ~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n 161 (251)
++|+||||+|+|++|+++|++|+||||++ ++..|+++++.+||+|+.+++ +++++.+.+++++++.++.+|+++ +|
T Consensus 90 ~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~~~~~~i~~-~n 166 (360)
T 2d1f_A 90 CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFDDCLELARKMAADFPTISLVNS-VN 166 (360)
T ss_dssp ECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSS--CHHHHHHHHHHHHHHCTTEEECST-TC
T ss_pred EeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEEcCC-CC
Confidence 99999999999999999999999999998 999999999999999999997 589999999999988755889988 89
Q ss_pred CchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCccccCCCCC---ce
Q 025563 162 PANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLNGGQPG---RL 232 (251)
Q Consensus 162 ~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~~~~~~---~~ 232 (251)
+.+++ ||.+++.||++|+...+|+||+|+|+||+++|++.++++.++ .+||++|||++++++..+.+. ..
T Consensus 167 ~~~~~-g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t 245 (360)
T 2d1f_A 167 PVRIE-GQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPET 245 (360)
T ss_dssp HHHHH-HHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHSSCCSSCCC
T ss_pred hhhhh-hHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHHHHHHhccccccCceEEEEecCCCCHHhcCCccCCccc
Confidence 99996 999999999999976799999999999999999999998753 699999999999887655432 34
Q ss_pred eecccCCcc
Q 025563 233 LFFLFFLFF 241 (251)
Q Consensus 233 ~i~g~g~~~ 241 (251)
..+||+.+.
T Consensus 246 ~a~gl~~~~ 254 (360)
T 2d1f_A 246 IATAIRIGS 254 (360)
T ss_dssp SCGGGCCSS
T ss_pred hHHHhCCCC
Confidence 567888765
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=341.23 Aligned_cols=226 Identities=22% Similarity=0.197 Sum_probs=198.6
Q ss_pred cccchhhHHHH---HHHhhcccCCCcceecccccccCCce--EEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeE
Q 025563 6 SMEDNHHKRAI---KKDATQLIGNTPMVYLNNVVDGCVAR--IAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80 (251)
Q Consensus 6 ~~~~~~~~~~~---~~~v~~~~~~TPl~~~~~l~~~~g~~--i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~ 80 (251)
.|+++.+.++. .+++.+.+|+|||+++++|++.+|++ ||+|+|++||+||||+|++.+++.++.++|. .+
T Consensus 7 ~~~ry~~~lp~~~~~~~v~~~~g~TPL~~~~~l~~~~g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~~~g~-----~~ 81 (352)
T 2zsj_A 7 IIKQYKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RA 81 (352)
T ss_dssp HHHHSGGGSSCCTTCCCCCCCCCCCCEEECHHHHHHHTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----CE
T ss_pred cceeeHhhCCCccCCCceecccCCCCCeehHHHHHHhCCCceEEEEECCCCCCccHHHHHHHHHHHHHHhcCC-----CE
Confidence 45555555543 35788999999999999998888888 9999999999999999999999999998874 34
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQF 159 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 159 (251)
||++|+||||+|+|++|+++|++|+||||++ ++..|+++++.+||+|+.+++ +++++.+.+++++++. +.+|+++
T Consensus 82 vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~- 157 (352)
T 2zsj_A 82 VICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--TFDDALNIVRKIGENF-PVEIVNS- 157 (352)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESS--CHHHHHHHHHHHHHHS-SEEECST-
T ss_pred EEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CcEECCC-
Confidence 9999999999999999999999999999998 999999999999999999997 5899999999998887 5888988
Q ss_pred CCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC------CcEEEEEeCCCCccccCCCC---C
Q 025563 160 ENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP------NIKVYGVEPTESAMLNGGQP---G 230 (251)
Q Consensus 160 ~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~------~~~vigVep~~s~~~~~~~~---~ 230 (251)
+|+.+++ ||.+++.||++|+...+|+||+|+|+||+++|++.++++.++ .+||++|||++++++..+.+ .
T Consensus 158 ~n~~~~~-g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~ 236 (352)
T 2zsj_A 158 VNPYRIE-GQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNP 236 (352)
T ss_dssp TCTHHHH-HHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEETTBCHHHHTSCCSSC
T ss_pred CCcchhh-hHhHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCcHHhcCCccCCC
Confidence 8999985 999999999999976799999999999999999999998753 69999999999987754433 2
Q ss_pred ceeecccCCcc
Q 025563 231 RLLFFLFFLFF 241 (251)
Q Consensus 231 ~~~i~g~g~~~ 241 (251)
...++||+.+.
T Consensus 237 ~t~a~gl~~~~ 247 (352)
T 2zsj_A 237 QTIATAIKIGN 247 (352)
T ss_dssp CCSCGGGCCSS
T ss_pred cchhHHhcCCC
Confidence 34568888765
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=345.22 Aligned_cols=219 Identities=19% Similarity=0.235 Sum_probs=192.1
Q ss_pred cccccchhhHHHHHHHhhc----------------ccCCCcceeccccc----ccCC----ceEEEEeCCCCC-CCchhh
Q 025563 4 EASMEDNHHKRAIKKDATQ----------------LIGNTPMVYLNNVV----DGCV----ARIAAKLEMMEP-CCSVKD 58 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~----------------~~~~TPl~~~~~l~----~~~g----~~i~~K~E~~~p-tGS~K~ 58 (251)
+..|.++++|..+..++.. .+++|||+++++|+ +.+| .+||+|+|++|| +||||+
T Consensus 40 ~~~~~~~~di~~a~~~l~~~~~~l~~~~~~~~~~~g~~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~ 119 (442)
T 3ss7_X 40 PYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKA 119 (442)
T ss_dssp GGTSCCHHHHHHHHHHHHHHHHHHHHHSGGGGGGTTCCCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHH
T ss_pred CcCCCCHHHHHHHHHHHHhCHHhHhhhChhhhccCCCCCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHH
Confidence 3445567888888777664 35799999999887 5554 799999999999 999999
Q ss_pred HHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHH
Q 025563 59 RIALSMIKD-----AEEKGLITPGK----------------SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERR 117 (251)
Q Consensus 59 R~a~~~l~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~ 117 (251)
|++.+++.. ++++|.+.+|. .+||++|+||||+|+|++|+++|++|+||||.+++..|+
T Consensus 120 Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~ 199 (442)
T 3ss7_X 120 RGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKK 199 (442)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred HHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHH
Confidence 999999986 78889887765 359999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCC--------CCCEEEE
Q 025563 118 IVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGG--------DVDILVA 189 (251)
Q Consensus 118 ~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~--------~~d~vv~ 189 (251)
++++.+||+|+.+++ +|+++.+.+++++++.++.||++++ |+.++..||.|++.||++|+.. .||+||+
T Consensus 200 ~~~r~~GA~Vv~v~~--~~~~a~~~a~~~a~~~~~~~~i~~~-n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~Vvv 276 (442)
T 3ss7_X 200 AKLRSHGVTVVEYEQ--DYGVAVEEGRKAAQSDPNCFFIDDE-NSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYL 276 (442)
T ss_dssp HHHHHTTCEEEEESS--CHHHHHHHHHHHHHTCTTEEECCTT-TCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEE
T ss_pred HHHHHCCCEEEEECC--CHHHHHHHHHHHHHhCCCceeCCCC-ChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEE
Confidence 999999999999997 6999999999999887678999985 5555557999999999999842 3669999
Q ss_pred ecCchhHHHHHHHHHHhh-CCCcEEEEEeCCCCcccc
Q 025563 190 GIGTGGTVTGSGRFLKEK-NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 190 ~vGtGg~~~Gi~~~~~~~-~~~~~vigVep~~s~~~~ 225 (251)
|+|+||+++|++.+|++. +|++||+||||++++++.
T Consensus 277 pvG~GG~~aGi~~~lk~~~~~~v~vigVep~~~~~~~ 313 (442)
T 3ss7_X 277 PCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCML 313 (442)
T ss_dssp ECSSSHHHHHHHHHHHHHHGGGEEEEEEEETTCCHHH
T ss_pred EeCCchHHHHHHHHHHHhcCCCCEEEEEEeCCchHHH
Confidence 999999999999999987 799999999999998753
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-47 Score=351.97 Aligned_cols=206 Identities=25% Similarity=0.296 Sum_probs=189.5
Q ss_pred chhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccCh
Q 025563 9 DNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGN 88 (251)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN 88 (251)
++++|..+ ++...+++|||+++++|++.+|++||+|+|++||+||||+|++.+++..+.++.. ..+||++|+||
T Consensus 16 ~~~~i~~a--~i~~~i~~TPL~~l~~Ls~~~g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~----~~gVV~aSsGN 89 (514)
T 1tdj_A 16 YLRAVLRA--PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK----AHGVITASAGN 89 (514)
T ss_dssp HHHHHHHC--CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC----SSSCEEEECSS
T ss_pred hHHHHHHH--hHhcccCCCCcEEchhhHHhhCCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcC----CCEEEEECCcH
Confidence 36666666 8999999999999999998899999999999999999999999999988764432 22399999999
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHH
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIH 168 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 168 (251)
||+|+|++|+++|++|+||||.+++..|+++++.+||+|+.+++ +++++.+.+++++++. +.+|++||+|+.++. |
T Consensus 90 hg~avA~aa~~lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvlv~~--~~dda~~~a~ela~e~-g~~~v~pfdnp~~ia-G 165 (514)
T 1tdj_A 90 HAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFDEAKAKAIELSQQQ-GFTWVPPFDHPMVIA-G 165 (514)
T ss_dssp SHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHHHHHHHHHHHHHHH-CCEECCSSCCHHHHH-H
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHHH-H
Confidence 99999999999999999999999999999999999999999986 6999999999999886 789999999999994 9
Q ss_pred HhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 169 YETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 169 ~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|.|++.||++|+.+ +|+||+|+|+||+++|++.++|+.+|++||+||||++|+++.
T Consensus 166 qgTig~EI~eQl~~-~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~~a~~l~ 221 (514)
T 1tdj_A 166 QGTLALELLQQDAH-LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLK 221 (514)
T ss_dssp HHHHHHHHHHHCTT-CCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHH
T ss_pred HHHHHHHHHHHCCC-CCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEeccCChhHH
Confidence 99999999999954 999999999999999999999999999999999999998875
|
| >1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=326.06 Aligned_cols=209 Identities=21% Similarity=0.182 Sum_probs=186.0
Q ss_pred hhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--cc
Q 025563 11 HHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEP--CCSVKDRIALSMIKDAEEKGLITPGKSVLIET--TG 86 (251)
Q Consensus 11 ~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--ss 86 (251)
.+....++++...+++|||+++++|++..|++||+|+|++|| +||||+|.+.+++.+++++|. . +||++ |+
T Consensus 6 ~~~l~~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~----~-~vv~~G~ss 80 (325)
T 1j0a_A 6 FALLAKFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA----D-VVITVGAVH 80 (325)
T ss_dssp HHHHTTCCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTC----S-EEEEECCTT
T ss_pred hhhhccCCCcccccCCCCceEhhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCC----C-EEEEcCCcc
Confidence 344556678999999999999999988788999999999999 999999999999999999885 3 38886 99
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCCCCh---HHHHHHHHHHhhcCCCeE-ecCCCCC
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGF---EGILRKGEEILSNTPNGF-MFRQFEN 161 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~---~~~~~~a~~~~~~~~~~~-~~~~~~n 161 (251)
||||+|+|++|+++|++|++|||++. +..|++.++.+||+|+.+++..+. +++.+.+++++++.+..| +.+++.|
T Consensus 81 GN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n 160 (325)
T 1j0a_A 81 SNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGAS 160 (325)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCS
T ss_pred hHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHHHHcCCceEEEcCCCCC
Confidence 99999999999999999999999999 999999999999999999986332 267788889988875434 4567789
Q ss_pred CchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 162 PANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 162 ~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+.+.+ ||.+++.||++|++..+|+||+|+||||+++|++.++++.+|++||+||||++++++.
T Consensus 161 ~~~~~-g~~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~~~ 223 (325)
T 1j0a_A 161 PIGTL-GYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVM 223 (325)
T ss_dssp HHHHT-HHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSH
T ss_pred HHHHH-HHHHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEEEecCchHHH
Confidence 98885 8999999999999668999999999999999999999999999999999999998765
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-46 Score=335.55 Aligned_cols=198 Identities=24% Similarity=0.329 Sum_probs=182.9
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
++...+++|||+++++|++.+|.+||+|+|++||+||||||++.+++.++.+++. ..+||++|+||||+|+|++|+
T Consensus 53 ~i~~~i~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~----~~~vv~assGN~g~a~A~aa~ 128 (366)
T 3iau_A 53 PVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREEL----DKGVITASAGNHAQGVALAGQ 128 (366)
T ss_dssp CGGGTCCCCCEEECHHHHHHHTSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHH----HHCEEEECSSHHHHHHHHHHH
T ss_pred HHhhhcCCCCcEEhhhhhHhhCCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCC----CCEEEEeCCCHHHHHHHHHHH
Confidence 6778899999999999999889999999999999999999999999987543221 123999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||++++..|+++++.+||+|+.+++ +|+++.+.+++++++. +++|++||+|+.++ .||.+++.||++
T Consensus 129 ~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~~~~~~-~~~~i~~~~n~~~i-~g~~t~~~Ei~~ 204 (366)
T 3iau_A 129 RLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGK--TFDEAQTHALELSEKD-GLKYIPPFDDPGVI-KGQGTIGTEINR 204 (366)
T ss_dssp HTTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHHHHHHHHHHHHHHH-TCEECCSSSSHHHH-HHHHHHHHHHHH
T ss_pred HhCCceEEEeCCCCCHHHHHHHHHCCCeEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCChHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 6999999999998886 89999999999998 599999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|+ +.+|+||+|+|+||+++|++.++++.+|++||++|||++++++.
T Consensus 205 q~-~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigVe~~~~~~l~ 250 (366)
T 3iau_A 205 QL-KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMT 250 (366)
T ss_dssp HC-CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEEEEEGGGCHHH
T ss_pred hc-CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEEEeecCChHHH
Confidence 99 78999999999999999999999999999999999999998765
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=332.67 Aligned_cols=230 Identities=18% Similarity=0.160 Sum_probs=190.5
Q ss_pred chhhHHHHHHHhh--cccCCCcceecccccccCC-ceEEEEeCCCC-CCCchhhHHHHHHHHHHH--HcCC----C----
Q 025563 9 DNHHKRAIKKDAT--QLIGNTPMVYLNNVVDGCV-ARIAAKLEMME-PCCSVKDRIALSMIKDAE--EKGL----I---- 74 (251)
Q Consensus 9 ~~~~~~~~~~~v~--~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~-ptGS~K~R~a~~~l~~a~--~~g~----~---- 74 (251)
+++++..+...+. ..+++|||+++++|++.+| .+||+|+|++| |+||||+|++.+++.+++ +.|. +
T Consensus 25 ~~~~~~~a~~~~~~~~~~~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~ 104 (398)
T 4d9i_A 25 SQSQAKLARQFHQKIAGYRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEH 104 (398)
T ss_dssp SHHHHHHHHHHHTTSTTCCCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHH
T ss_pred CHHHHHHHHHHHhhCCCCCCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhcccccccchhh
Confidence 4667777777665 4589999999999998888 59999999999 999999999999999884 2331 0
Q ss_pred ----CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 75 ----TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 75 ----~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
.+...+||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +|+++.+.+++++++.
T Consensus 105 l~~~~~~~~~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~~~~~~~ 182 (398)
T 4d9i_A 105 LKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDM--NYDDTVRLTMQHAQQH 182 (398)
T ss_dssp HHHCCSCCCEEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSS--CHHHHHHHHHHHHHHH
T ss_pred hhhhccCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc
Confidence 1223149999999999999999999999999999999999999999999999999997 6899999999998887
Q ss_pred CCeEecCC-----CC-CCchHHHHHhhHHHHHhhhhCCC---CCEEEEecCchhHHHHHHHHHHhh--CCCcEEEEEeCC
Q 025563 151 PNGFMFRQ-----FE-NPANPKIHYETTGPEIWKDSGGD---VDILVAGIGTGGTVTGSGRFLKEK--NPNIKVYGVEPT 219 (251)
Q Consensus 151 ~~~~~~~~-----~~-n~~~~~~g~~t~~~EI~~q~~~~---~d~vv~~vGtGg~~~Gi~~~~~~~--~~~~~vigVep~ 219 (251)
+++|++| |+ |+.+...||.|++.||++|+... ||+||+|+|+||+++|++.++++. .+++||++|||+
T Consensus 183 -g~~~v~~~~~~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~ 261 (398)
T 4d9i_A 183 -GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPD 261 (398)
T ss_dssp -TCEECCSSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEET
T ss_pred -CCEEecCcccCCcCCCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeC
Confidence 8899986 65 34555579999999999998544 999999999999999999999876 478999999999
Q ss_pred CCcccc----CCCCCc--eeecccCCcc
Q 025563 220 ESAMLN----GGQPGR--LLFFLFFLFF 241 (251)
Q Consensus 220 ~s~~~~----~~~~~~--~~i~g~g~~~ 241 (251)
+++++. .+.+.+ ..+++|+.|+
T Consensus 262 ~~~~~~~s~~~g~~~~~~~~~~tia~gl 289 (398)
T 4d9i_A 262 KADCIYRSGVKGDIVNVGGDMATIMAGL 289 (398)
T ss_dssp TSCHHHHHHHHTSCCCC------CCTTC
T ss_pred CCchHHHHHHcCCceecCCCCCceeccc
Confidence 998875 344433 2355566554
|
| >4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-45 Score=326.07 Aligned_cols=221 Identities=18% Similarity=0.164 Sum_probs=186.0
Q ss_pred HHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEec--cCh
Q 025563 13 KRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEP--CCSVKDRIALSMIKDAEEKGLITPGKSVLIETT--GGN 88 (251)
Q Consensus 13 ~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~s--sGN 88 (251)
+..+++++...+++|||+++++|++.+|++||+|+|++|| +||||+|++.+++.+++++|. + +||++| +||
T Consensus 19 ~~~a~~ri~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~----~-~vv~~s~tsGN 93 (342)
T 4d9b_A 19 HLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGA----D-TLITAGAIQSN 93 (342)
T ss_dssp GGGGSCCCCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTC----C-EEEEEEETTCH
T ss_pred hhccCCcccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCC----C-EEEEcCCcccH
Confidence 3667789999999999999999988889999999999999 999999999999999999885 3 488886 699
Q ss_pred HHHHHHHHHHHCCCcEEEEecCCCcH--------HHHHHHHHcCCEEEEeCCCCChHHHHH-HHHHHhhcCCCeEec-CC
Q 025563 89 TGIGLAFIAALRGYKLIIVMPSIASM--------ERRIVLRALGAEVYLADQAGGFEGILR-KGEEILSNTPNGFMF-RQ 158 (251)
Q Consensus 89 ~g~alA~~a~~~G~~~~ivvp~~~~~--------~~~~~~~~~Ga~v~~v~~~~~~~~~~~-~a~~~~~~~~~~~~~-~~ 158 (251)
||+|+|++|+++|++|+||||++++. .|++.++.+||+|+.+++..+++++.+ .++++.++.+..|++ .+
T Consensus 94 ~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~ 173 (342)
T 4d9b_A 94 HVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVG 173 (342)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSSHHHHHHHHHHHHHHTTCCEEECCGG
T ss_pred HHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhhHHHHHHHHHHHHHhcCCceEEeCCC
Confidence 99999999999999999999988763 589999999999999998655566654 567777765333433 35
Q ss_pred CCCCchHHHHHhhHHHHHhhhhC--CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCC---Ccee
Q 025563 159 FENPANPKIHYETTGPEIWKDSG--GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQP---GRLL 233 (251)
Q Consensus 159 ~~n~~~~~~g~~t~~~EI~~q~~--~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~---~~~~ 233 (251)
+.|+.+. .||.+++.||++|+. ..+|+||+|+||||+++|++.++++.+|++||+||||++++.+..... .+..
T Consensus 174 ~~n~~~~-~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~ 252 (342)
T 4d9b_A 174 GSSALGA-MGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAI 252 (342)
T ss_dssp GCSHHHH-HHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHHHHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHH
Confidence 5677776 499999999999996 479999999999999999999999999999999999999987653211 1233
Q ss_pred ecccCC
Q 025563 234 FFLFFL 239 (251)
Q Consensus 234 i~g~g~ 239 (251)
.+|||.
T Consensus 253 a~gl~~ 258 (342)
T 4d9b_A 253 AGQLAL 258 (342)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 456666
|
| >1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=327.53 Aligned_cols=203 Identities=16% Similarity=0.107 Sum_probs=181.0
Q ss_pred HHHhhcccCCCcceecccccccC-C-ceEEEEeCCCC-C--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEE--eccChH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGC-V-ARIAAKLEMME-P--CCSVKDRIALSMIKDAEEKGLITPGKSVLIE--TTGGNT 89 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~-g-~~i~~K~E~~~-p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~--~ssGN~ 89 (251)
++++...+++|||+++++|++.+ | .+||+|+|++| | +||||+|++.+++.++.++|. . +||+ +|+|||
T Consensus 6 ~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~----~-~vv~~G~ssGN~ 80 (341)
T 1f2d_A 6 FAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY----T-HLVSIGGRQSNQ 80 (341)
T ss_dssp SCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCC----S-EEEEEEETTCHH
T ss_pred CCCcccCCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC----C-EEEEcCCcchHH
Confidence 35678899999999999998888 8 89999999999 9 999999999999999998875 3 4889 999999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCc-----HH------HHHHHHHcCCEEEEeCCCCCh---HHHHHHHHHHhhcCCCeE-
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIAS-----ME------RRIVLRALGAEVYLADQAGGF---EGILRKGEEILSNTPNGF- 154 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~-----~~------~~~~~~~~Ga~v~~v~~~~~~---~~~~~~a~~~~~~~~~~~- 154 (251)
|+|+|++|+++|++|++|||...+ +. |++.++.+||+|+.+++..+. +++.+.+++++++.+..+
T Consensus 81 g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~ 160 (341)
T 1f2d_A 81 TRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYP 160 (341)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999999999999999887 33 999999999999999975322 367778888888765344
Q ss_pred ecCC-CCCCchHHHHHhhHHHHHhhhhC---CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 155 MFRQ-FENPANPKIHYETTGPEIWKDSG---GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 155 ~~~~-~~n~~~~~~g~~t~~~EI~~q~~---~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+.++ |+|+.+++ ||.+++.||++|+. ..+|+||+|+|||||++|++.+|++.+|++||+||||++++++.
T Consensus 161 i~~~~~~np~~~~-G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~ 234 (341)
T 1f2d_A 161 IPAGCSEHKYGGL-GFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKT 234 (341)
T ss_dssp ECGGGTTSTTTTT-HHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHH
T ss_pred eCCCcCCCCccHH-HHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEecCchHHH
Confidence 4578 99999996 99999999999995 47999999999999999999999999999999999999998765
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=320.95 Aligned_cols=196 Identities=26% Similarity=0.348 Sum_probs=176.4
Q ss_pred cCCCcceecccccccCCceEEEEeCCCCC-CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCC
Q 025563 24 IGNTPMVYLNNVVDGCVARIAAKLEMMEP-CCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGY 102 (251)
Q Consensus 24 ~~~TPl~~~~~l~~~~g~~i~~K~E~~~p-tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~ 102 (251)
+.+|||+++++|++. |.+||+|+|++|| |||||+|++.+++..+. +.+++|. +|+++|+||||+|+|++|+++|+
T Consensus 94 ~~~TPL~~l~~Ls~~-g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~--~a~~~g~-~Iv~assGNhG~AlA~aaa~~Gl 169 (389)
T 1wkv_A 94 GKPTPLVRSRLQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLS--RRVEKGS-LVADATSSNFGVALSAVARLYGY 169 (389)
T ss_dssp SCSCCEEECCCCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHT--TTSCTTC-EEEEECCHHHHHHHHHHHHHTTC
T ss_pred CCCCCeEEccccccC-CCeEEEEEcCCCCCcCChHHHHHHHHHHHHH--HHHhcCC-EEEEECCcHHHHHHHHHHHHcCC
Confidence 468999999999876 8899999999999 99999999999998854 3334453 59999999999999999999999
Q ss_pred cEEEEecCCCcHHHHHHHHHcCCEEE-EeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhC
Q 025563 103 KLIIVMPSIASMERRIVLRALGAEVY-LADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSG 181 (251)
Q Consensus 103 ~~~ivvp~~~~~~~~~~~~~~Ga~v~-~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~ 181 (251)
+|+||||..++..++.+++.+||+|+ .++.. +++++.+.+++++++. +.+|++||+|+.++.+||.+++.||.+|+.
T Consensus 170 ~~~ivmp~~~~~~k~~~~~~~GAeVv~~v~~~-~~~da~~~a~~~~~~~-g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~~ 247 (389)
T 1wkv_A 170 RARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP-STVHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSR 247 (389)
T ss_dssp EEEEEEETTSCHHHHHHHHHTTCEEEEETTCS-SSGGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHcCCEEEEEcCCC-CHHHHHHHHHHHHHcc-CcEecCcCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 78732 6888999998887775 789999999999888899999999999984
Q ss_pred ---CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 182 ---GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 182 ---~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
..||+||+|+|+||+++|++.+|++..|++||+||||.+++++.
T Consensus 248 ~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~l~ 294 (389)
T 1wkv_A 248 RGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIP 294 (389)
T ss_dssp HTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCT
T ss_pred hcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCccc
Confidence 36999999999999999999999999999999999999987664
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=314.99 Aligned_cols=200 Identities=20% Similarity=0.175 Sum_probs=174.8
Q ss_pred HHHhhcccCCCcceecccccccC-C-ceEEEEeCCCC-C--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEE--eccChH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGC-V-ARIAAKLEMME-P--CCSVKDRIALSMIKDAEEKGLITPGKSVLIE--TTGGNT 89 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~-g-~~i~~K~E~~~-p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~--~ssGN~ 89 (251)
++++...+++|||+++++|++.+ | .+||+|+|++| | +||||+|++.+++.++.++|. . +||+ +|+|||
T Consensus 6 ~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~----~-~vv~~GassGN~ 80 (338)
T 1tzj_A 6 FPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC----D-TLVSIGGIQSNQ 80 (338)
T ss_dssp SCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTC----C-EEEEEEETTCHH
T ss_pred CCccccCCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC----C-EEEEcCCchhHH
Confidence 46788999999999999998887 7 89999999997 8 999999999999999998875 3 3887 799999
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCcHH--------HHHHHHHcCCEEEEeCCCCChHH-----HHHHHHHHhhcCCCeEec
Q 025563 90 GIGLAFIAALRGYKLIIVMPSIASME--------RRIVLRALGAEVYLADQAGGFEG-----ILRKGEEILSNTPNGFMF 156 (251)
Q Consensus 90 g~alA~~a~~~G~~~~ivvp~~~~~~--------~~~~~~~~Ga~v~~v~~~~~~~~-----~~~~a~~~~~~~~~~~~~ 156 (251)
|+|+|++|+++|++|++|||++.+.. |+++++.+||+|+.+++. +++ +.+.+++++++.+..|++
T Consensus 81 g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~~~~~~a~~l~~~~~~~~~~ 158 (338)
T 1tzj_A 81 TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG--FDIGFRRSWEDALESVRAAGGKPYAI 158 (338)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC---------CHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCc--chhhHHHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999988764 999999999999999874 333 467778888876444543
Q ss_pred -CC-CCCCchHHHHHhhHHHHHhhhhC---CCCCEEEEecCchhHHHHHHHHHHhh-CCCcEEEEEeCCCCcccc
Q 025563 157 -RQ-FENPANPKIHYETTGPEIWKDSG---GDVDILVAGIGTGGTVTGSGRFLKEK-NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 157 -~~-~~n~~~~~~g~~t~~~EI~~q~~---~~~d~vv~~vGtGg~~~Gi~~~~~~~-~~~~~vigVep~~s~~~~ 225 (251)
++ ++|+.+++ ||.+++.||++|+. ..+|+||+|+|+||+++|++.++++. +|+ ||++|||++++.+.
T Consensus 159 p~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~~~~~~~ 231 (338)
T 1tzj_A 159 PAGCSDHPLGGL-GFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDASAKPAQT 231 (338)
T ss_dssp CGGGTSSTTTTT-HHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECSSCHHHH
T ss_pred CCCcCCCcccHH-HHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEccCchHHH
Confidence 56 89999996 99999999999985 47999999999999999999999998 888 99999999997764
|
| >1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=317.87 Aligned_cols=217 Identities=22% Similarity=0.219 Sum_probs=180.1
Q ss_pred CccccccchhhHHHHHHHhh--------------cccC-CCcceecccccccC-CceEEEEeCCCCCCCchhhHHHHHHH
Q 025563 2 VLEASMEDNHHKRAIKKDAT--------------QLIG-NTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMI 65 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~--------------~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~l 65 (251)
++|..|++++++..+++++. ..++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++
T Consensus 38 ~p~~~~~~~~~i~~A~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK~R~a~~~i 117 (418)
T 1x1q_A 38 VPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQA 117 (418)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTTHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHhhChHHHHHHHHhhhcccCCCCCcEEhHHhHhhcCCceEEEEEccCCcCccHHHHHHHHHH
Confidence 35556777889999988887 4674 59999999998888 58999999999999999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC---cHHHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 025563 66 KDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA---SMERRIVLRALGAEVYLADQ-AGGFEGILR 141 (251)
Q Consensus 66 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~ 141 (251)
..+.++|+ ...|+++|+||||+|+|++|+++|++|+||||... +..|+.+++.+||+|+.++. ..+++++.+
T Consensus 118 ~~a~~~g~----~~vI~~~ssGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~~a~~ 193 (418)
T 1x1q_A 118 LLARRMGK----RRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATN 193 (418)
T ss_dssp HHHHHHTC----CEEEEECSSSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECSTTSSHHHHHH
T ss_pred HHHHHcCC----CEEEEecCchHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 98887775 33356799999999999999999999999999752 23678899999999999984 347889888
Q ss_pred HHHH-HhhcCCCeEe-cCCCCCCc----hHHHHHhhHHHHHhhhhC----CCCCEEEEecCchhHHHHHHHHHHhh-CCC
Q 025563 142 KGEE-ILSNTPNGFM-FRQFENPA----NPKIHYETTGPEIWKDSG----GDVDILVAGIGTGGTVTGSGRFLKEK-NPN 210 (251)
Q Consensus 142 ~a~~-~~~~~~~~~~-~~~~~n~~----~~~~g~~t~~~EI~~q~~----~~~d~vv~~vGtGg~~~Gi~~~~~~~-~~~ 210 (251)
.+.+ ++++.++.+| ++++.|+. ++..||.|++.||.+|+. ..||+||+|+|+||+++|++.+|++. .|+
T Consensus 194 ~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~ 273 (418)
T 1x1q_A 194 EAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGR 273 (418)
T ss_dssp HHHHHHHHTTTTEEECCCCSSSSTTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHhCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCC
Confidence 7754 5666545555 45554443 233499999999999983 45999999999999999999999987 789
Q ss_pred cEEEEEeCCCCc
Q 025563 211 IKVYGVEPTESA 222 (251)
Q Consensus 211 ~~vigVep~~s~ 222 (251)
+||+||||++++
T Consensus 274 ~~vigVe~~g~~ 285 (418)
T 1x1q_A 274 PKLIGVEAAGEG 285 (418)
T ss_dssp CEEEEEEECCTT
T ss_pred CeEEEEecCCcc
Confidence 999999999974
|
| >1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=314.55 Aligned_cols=216 Identities=19% Similarity=0.195 Sum_probs=179.5
Q ss_pred CccccccchhhHHHHHHHhh--------------cccC-CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHH
Q 025563 2 VLEASMEDNHHKRAIKKDAT--------------QLIG-NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~--------------~~~~-~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~ 66 (251)
++|..|++++++..+++++. ..++ +|||+++++|++.+|.+||+|+|++|||||||+|++.+++.
T Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~~~l~~~~g~~i~lK~E~l~ptGSfK~R~a~~~~~ 95 (396)
T 1qop_B 16 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQAL 95 (396)
T ss_dssp SCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCCCCcEEhhhhhhccCCeEEEEeccCCCCCcHHHHHHHHHHH
Confidence 45666788888888888876 3676 49999999999989999999999999999999999999999
Q ss_pred HHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcH--HHHHHHHHcCCEEEEeCC-CCChHHHHHH
Q 025563 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASM--ERRIVLRALGAEVYLADQ-AGGFEGILRK 142 (251)
Q Consensus 67 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~--~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~ 142 (251)
.+.++|+ ...++++|+||||+|+|++|+++|++|+||||.. .+. .|+.+++.+||+|+.++. ..+++++.+.
T Consensus 96 ~a~~~g~----~~vi~e~ssGNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~~~a~~~ 171 (396)
T 1qop_B 96 LAKRMGK----SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNE 171 (396)
T ss_dssp HHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHH
T ss_pred HHHHcCc----CEEEEecCchHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHH
Confidence 9888875 3324448999999999999999999999999985 433 457899999999999984 4478888888
Q ss_pred HHHH-hhcCCCeEe-cCCCCCCc----hHHHHHhhHHHHHhhhh----CCCCCEEEEecCchhHHHHHHHHHHhhCCCcE
Q 025563 143 GEEI-LSNTPNGFM-FRQFENPA----NPKIHYETTGPEIWKDS----GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIK 212 (251)
Q Consensus 143 a~~~-~~~~~~~~~-~~~~~n~~----~~~~g~~t~~~EI~~q~----~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~ 212 (251)
+.+. +++.++.+| ++++.|+. ++..||.+++.||.+|+ +..||+||+|+|+||+++|++.+++ ..|++|
T Consensus 172 a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~~~~~~ 250 (396)
T 1qop_B 172 ALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-NDTSVG 250 (396)
T ss_dssp HHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSE
T ss_pred HHHHHHhccCCcEEEeCCcCCCCCchHHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-cCCCCE
Confidence 8754 665546555 45554443 33348999999999998 4579999999999999999999998 488999
Q ss_pred EEEEeCCCCc
Q 025563 213 VYGVEPTESA 222 (251)
Q Consensus 213 vigVep~~s~ 222 (251)
|+||||+++.
T Consensus 251 vigVe~~~~~ 260 (396)
T 1qop_B 251 LIGVEPGGHG 260 (396)
T ss_dssp EEEEEEEETB
T ss_pred EEEEeCCCcc
Confidence 9999999874
|
| >1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=309.41 Aligned_cols=214 Identities=21% Similarity=0.219 Sum_probs=175.3
Q ss_pred cccccchhhHHHHHHHhhc--------------ccCC-CcceecccccccCC-ceEEEEeCCCCCCCchhhHHHHHHHHH
Q 025563 4 EASMEDNHHKRAIKKDATQ--------------LIGN-TPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIALSMIKD 67 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~--------------~~~~-TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~l~~ 67 (251)
+.-|.+++++..++.++.. .+++ |||+++++|++.+| ++||+|+|++||+||||+|++.+++..
T Consensus 13 ~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~a~~~i~~ 92 (388)
T 1v8z_A 13 ETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALL 92 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCCCCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 3334456677777777664 7865 99999999988886 899999999999999999999999998
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-Cc--HHHHHHHHHcCCEEEEeCC-CCChHHHHHHH
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-AS--MERRIVLRALGAEVYLADQ-AGGFEGILRKG 143 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~--~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a 143 (251)
+.++|. ...|+++|+||||+|+|++|+++|++|+||||.. .+ +.|+++++.+||+|+.++. ..+++++.+.+
T Consensus 93 a~~~g~----~~vv~~~ssGN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~~~~~~a~~~a 168 (388)
T 1v8z_A 93 AKFMGK----TRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEA 168 (388)
T ss_dssp HHHTTC----CEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHH
T ss_pred HHHcCC----CEEEEecCchHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHH
Confidence 887775 3334469999999999999999999999999974 22 4568999999999999985 34688888887
Q ss_pred HH-HhhcCCCeEe-cCCCCCCch----HHHHHhhHHHHHhhhh----CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEE
Q 025563 144 EE-ILSNTPNGFM-FRQFENPAN----PKIHYETTGPEIWKDS----GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKV 213 (251)
Q Consensus 144 ~~-~~~~~~~~~~-~~~~~n~~~----~~~g~~t~~~EI~~q~----~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~v 213 (251)
.+ ++++.++.+| ++++.|+.+ +..||.|++.||++|+ ...+|+||+|+|+||+++|++.+++. .|++||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~n~~p~~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~~-~~~~~v 247 (388)
T 1v8z_A 169 LRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-DKKVKL 247 (388)
T ss_dssp HHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEE
T ss_pred HHHHHHhCCCceEecCCccCCCCchhHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHhh-CCCceE
Confidence 54 5666545554 567666543 3348999999999998 44699999999999999999998884 889999
Q ss_pred EEEeCCCCc
Q 025563 214 YGVEPTESA 222 (251)
Q Consensus 214 igVep~~s~ 222 (251)
+||||+++.
T Consensus 248 igve~~~~~ 256 (388)
T 1v8z_A 248 VGVEAGGKG 256 (388)
T ss_dssp EEEEEEETB
T ss_pred EEEccCccc
Confidence 999999874
|
| >2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=305.50 Aligned_cols=215 Identities=24% Similarity=0.262 Sum_probs=175.4
Q ss_pred CccccccchhhHHHHHHHhh--------------cccC-CCcceecccccccC-CceEEEEeCCCCCCCchhhHHHHHHH
Q 025563 2 VLEASMEDNHHKRAIKKDAT--------------QLIG-NTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMI 65 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~--------------~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~l 65 (251)
++|..|+.++++..+++++. ..++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++
T Consensus 42 ~pe~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~g~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~a~~~~ 121 (422)
T 2o2e_A 42 VPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQA 121 (422)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTSTHHHHHHHHHTTTTSSCSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHHHHHHH
Confidence 34555677888888888874 3564 59999999999988 47999999999999999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc---HHHHHHHHHcCCEEEEeCC-CCChHHHHH
Q 025563 66 KDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS---MERRIVLRALGAEVYLADQ-AGGFEGILR 141 (251)
Q Consensus 66 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~---~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~ 141 (251)
..+.+.|+ ...|+++|+||||+|+|++|+++|++|+||||.... ..|+.+++.+||+|+.++. ..+++++.+
T Consensus 122 ~~a~~~g~----~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~~~~~~da~~ 197 (422)
T 2o2e_A 122 LLARRMGK----TRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAIN 197 (422)
T ss_dssp HHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECSTTSCHHHHHH
T ss_pred HHHHHcCC----CeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 98888775 333667999999999999999999999999998532 4678899999999999985 347889988
Q ss_pred HHHH-HhhcCCCeEe-cCCCCCCc----hHHHHHhhHHHHHhhhh----CCCCCEEEEecCchhHHHHHHHHHHhhCCCc
Q 025563 142 KGEE-ILSNTPNGFM-FRQFENPA----NPKIHYETTGPEIWKDS----GGDVDILVAGIGTGGTVTGSGRFLKEKNPNI 211 (251)
Q Consensus 142 ~a~~-~~~~~~~~~~-~~~~~n~~----~~~~g~~t~~~EI~~q~----~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~ 211 (251)
.+.+ ++++.++.+| ++++.|+. ++..||.+++.||.+|+ +..||+||+|+|+||+++|++.+++. .|++
T Consensus 198 ~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~-~p~v 276 (422)
T 2o2e_A 198 EAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLD-DPGV 276 (422)
T ss_dssp HHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTT-CTTC
T ss_pred HHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhc-CCCC
Confidence 7754 5666446555 44544332 34448999999999997 34599999999999999999888864 7889
Q ss_pred EEEEEeCCCC
Q 025563 212 KVYGVEPTES 221 (251)
Q Consensus 212 ~vigVep~~s 221 (251)
||+||||+++
T Consensus 277 ~vigVe~~g~ 286 (422)
T 2o2e_A 277 RLVGFEAAGD 286 (422)
T ss_dssp EEEEEEECC-
T ss_pred eEEEEecCCC
Confidence 9999999987
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=309.22 Aligned_cols=213 Identities=16% Similarity=0.107 Sum_probs=177.1
Q ss_pred hhcccCCCcceeccccccc-CCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHH---cCCCCCCCeEEEEeccChHHHHHH
Q 025563 20 ATQLIGNTPMVYLNNVVDG-CVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEE---KGLITPGKSVLIETTGGNTGIGLA 94 (251)
Q Consensus 20 v~~~~~~TPl~~~~~l~~~-~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~---~g~~~~g~~~vv~~ssGN~g~alA 94 (251)
+...+++|||+++++|++. +|. +||+|+|++|||||||||++.+++..+.+ ++. +..+||++|+||||.|+|
T Consensus 124 v~l~~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~~---g~~~Vv~aSsGNtG~AlA 200 (486)
T 1e5x_A 124 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKR---PVVGVGCASTGDTSAALS 200 (486)
T ss_dssp CCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTC---CCCEEEECCCSHHHHHHH
T ss_pred ccccCCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcCC---CCeEEEEcCCCHHHHHHH
Confidence 4556889999999999887 774 89999999999999999999888776543 331 233599999999999999
Q ss_pred HHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHH
Q 025563 95 FIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTG 173 (251)
Q Consensus 95 ~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 173 (251)
++|+++|++|+||+|.+ ++..|+.+++.+||+|+.+++ +|+++.+.+++++++. +.++++++ |+.+++ ||.+++
T Consensus 201 ~~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g--~~dd~~~~a~~l~~~~-~~~~vns~-N~~~i~-gq~t~~ 275 (486)
T 1e5x_A 201 AYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMKLIREITAEL-PIYLANSL-NSLRLE-GQKTAA 275 (486)
T ss_dssp HHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-CEEEGGGS-HHHHHH-HHTHHH
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHhcC-CEEEeCCC-CHHHHH-HHHHHH
Confidence 99999999999999996 999999999999999999997 5999999999998886 78889887 899996 999999
Q ss_pred HHHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhhC------CCcEEEEEeCCCCccccC----CC----C---Cceeec
Q 025563 174 PEIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEKN------PNIKVYGVEPTESAMLNG----GQ----P---GRLLFF 235 (251)
Q Consensus 174 ~EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~~------~~~~vigVep~~s~~~~~----~~----~---~~~~i~ 235 (251)
+||++|+++ .+|+||+|+|+||+++|++.+|++.. |.+||++|||++++++.. |. + .++..+
T Consensus 276 ~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~ 355 (486)
T 1e5x_A 276 IEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFAS 355 (486)
T ss_dssp HHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC---------
T ss_pred HHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCc
Confidence 999999964 59999999999999999999999864 789999999999887642 31 1 356777
Q ss_pred ccCCc
Q 025563 236 LFFLF 240 (251)
Q Consensus 236 g~g~~ 240 (251)
||+.+
T Consensus 356 gi~i~ 360 (486)
T 1e5x_A 356 AIQIG 360 (486)
T ss_dssp -----
T ss_pred cccCC
Confidence 88766
|
| >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=258.93 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=152.7
Q ss_pred CCCcceecccccccCCceEEEEeCCC-CCCCchhhHHHHHHHHHHH--HcCCCCCCCeEEEEeccChHHHHHH-HHHHHC
Q 025563 25 GNTPMVYLNNVVDGCVARIAAKLEMM-EPCCSVKDRIALSMIKDAE--EKGLITPGKSVLIETTGGNTGIGLA-FIAALR 100 (251)
Q Consensus 25 ~~TPl~~~~~l~~~~g~~i~~K~E~~-~ptGS~K~R~a~~~l~~a~--~~g~~~~g~~~vv~~ssGN~g~alA-~~a~~~ 100 (251)
++|||+++++ +||+ +|++ |||||||||++.++++... .++ +..+|+++|+||||.|+| .+|+++
T Consensus 82 ~~TPL~~l~~-------~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a~~~----~~~~Iv~atsGNtG~A~A~~~a~~~ 149 (428)
T 1vb3_A 82 FPAPVANVES-------DVGC-LELFHGPTLAFKDFGGRFMAQMLTHIAGD----KPVTILTATSGDTGAAVAHAFYGLP 149 (428)
T ss_dssp SCCCEEEEET-------TEEE-EECCCSTTSBTHHHHHHHHHHHHHHHTTT----CCEEEEEECSSSHHHHHHHHTTTCT
T ss_pred CCCCeEEecC-------CeEE-eeccCCCcccHHHHHHHHHHHHHHHHHhc----CCCEEEecCCchHHHHHHHHHhhhc
Confidence 7899999874 6999 7777 6999999999998853322 222 244599999999999999 599999
Q ss_pred CCcEEEEecC-CCcHHHHHHHHHcCCEE--EEeCCCCChHHHHHHHHHHhhc-----CCCeEecCCCCCCchHHHHHhhH
Q 025563 101 GYKLIIVMPS-IASMERRIVLRALGAEV--YLADQAGGFEGILRKGEEILSN-----TPNGFMFRQFENPANPKIHYETT 172 (251)
Q Consensus 101 G~~~~ivvp~-~~~~~~~~~~~~~Ga~v--~~v~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~n~~~~~~g~~t~ 172 (251)
|++|+||||+ +++..++++|+.+||+| +.+++ +++++.+.++++.++ ..+.++++++ |+.+++ ||.++
T Consensus 150 G~~~~I~~P~~~~s~~k~~~m~~~GA~V~~v~v~g--~~d~~~~~~~~~~~d~~~~~~~~~~~~n~~-n~~~~~-gq~t~ 225 (428)
T 1vb3_A 150 NVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDG--DFDACQALVKQAFDDEELKVALGLNSANSI-NISRLL-AQICY 225 (428)
T ss_dssp TEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEES--CHHHHHHHHHHGGGCHHHHHHHTEECCSTT-SHHHHH-HTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhcCCeEEEEEeCC--CHHHHHHHHHHHHhchhhhhhcCeeeCCCC-CHHHHH-HHHHH
Confidence 9999999999 59999999999999999 66665 689999988888753 1256677764 788875 99999
Q ss_pred HHHHhhhhCC---CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 173 GPEIWKDSGG---DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 173 ~~EI~~q~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
+.||++|+.. .+|+||+|+|+||+++|++.+++...|.+|||+|++.+.
T Consensus 226 ~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g~p~~kii~a~~~~~ 277 (428)
T 1vb3_A 226 YFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVND 277 (428)
T ss_dssp HHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCC
T ss_pred HHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcCCCCCeEEeecCCCh
Confidence 9999999964 599999999999999999999987778889999998863
|
| >1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=247.48 Aligned_cols=191 Identities=14% Similarity=0.027 Sum_probs=150.7
Q ss_pred ccCCCccee--cccccccCCceEEEEeCCCCCCCchhhHHHHHHH---HHHH-HcCC-----CCCCCeEEEEeccChHHH
Q 025563 23 LIGNTPMVY--LNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMI---KDAE-EKGL-----ITPGKSVLIETTGGNTGI 91 (251)
Q Consensus 23 ~~~~TPl~~--~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l---~~a~-~~g~-----~~~g~~~vv~~ssGN~g~ 91 (251)
..+.|||++ ++++ .+||+|.|++|||||||||++.+++ .+++ ++|. ++++ .+||++||||||.
T Consensus 93 ~~g~TPLv~~~l~~l-----~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~-~~Iv~ATSGNtG~ 166 (514)
T 1kl7_A 93 SDEVTPLVQNVTGDK-----ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQ-ITVVGATSGDTGS 166 (514)
T ss_dssp STTSSCEECCTTCSS-----SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCC-EEEEEECSSSHHH
T ss_pred CCCCCceeehhcccc-----cchhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhcCCccccccCCC-CEEEECCCCcHHH
Confidence 467899999 7665 4799999999999999999999984 4443 3452 3333 4599999999999
Q ss_pred HHHHHH--HHCCCcEEEEecCC-CcHHHHHHH---HHcCCEEEEeCCCCChHHHHHHHHHHhhcCC-----CeEecCCCC
Q 025563 92 GLAFIA--ALRGYKLIIVMPSI-ASMERRIVL---RALGAEVYLADQAGGFEGILRKGEEILSNTP-----NGFMFRQFE 160 (251)
Q Consensus 92 alA~~a--~~~G~~~~ivvp~~-~~~~~~~~~---~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~ 160 (251)
| |++| ++.|++++||+|++ +++.++.++ ..+|++++.+++ +|+++.+.+++++++.+ +.++.++.
T Consensus 167 A-A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~~g~~~~vv~v~g--~fdda~~~vk~l~~~~~~~~~~~~~~~Ns~- 242 (514)
T 1kl7_A 167 A-AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTG--TFDNCQDIVKAIFGDKEFNSKHNVGAVNSI- 242 (514)
T ss_dssp H-HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESS--CHHHHHHHHHHHHHCSSCC--CCBCCCCSC-
T ss_pred H-HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhhcCCCEEEEEcCC--CHHHHHHHHHHHHhcccccccceeEeeCCC-
Confidence 9 6666 88999999999997 888777777 345667777776 69999999999987742 23344443
Q ss_pred CCchHHHHHhhHHHHHhhhh-C---CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 161 NPANPKIHYETTGPEIWKDS-G---GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 161 n~~~~~~g~~t~~~EI~~q~-~---~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|+..++ |+.+.+.|+.+|+ + +.+|+||+|+|+||++.|++.+.+.-.|.+|+++|||++ +++.
T Consensus 243 N~~ri~-gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~~ak~~G~p~~rli~v~~~n-~~l~ 309 (514)
T 1kl7_A 243 NWARIL-AQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEN-DILD 309 (514)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSC-CHHH
T ss_pred CHhHHh-hHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHHHHHHcCCCCCEEEEEeCCc-chHH
Confidence 666664 9999999999998 4 358999999999999999886544435778999999999 4544
|
| >4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=241.53 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=151.6
Q ss_pred CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHH---HHHHH-HcCCCCCCCeEEEEeccChHHH-HHHHHHHHC
Q 025563 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSM---IKDAE-EKGLITPGKSVLIETTGGNTGI-GLAFIAALR 100 (251)
Q Consensus 26 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~---l~~a~-~~g~~~~g~~~vv~~ssGN~g~-alA~~a~~~ 100 (251)
-|||+++.. ++|+|.|++|||||||||++.++ +..+. ++|. ..+|+++|+||||. +++.+|++.
T Consensus 93 ~~pl~~l~~-------~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~----~~~Vv~ASSGNtG~aa~aa~a~~~ 161 (468)
T 4f4f_A 93 VCPLVQTDA-------NEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGE----RATIVGATSGDTGGAAIEAFGGRD 161 (468)
T ss_dssp SSCEEEEET-------TEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTC----CEEEEEECSSHHHHHHHHHHTTCS
T ss_pred CCceEEecC-------CeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCC----CcEEEEECCchHHHHHHHHHHhcc
Confidence 389988742 69999999999999999999999 66664 4553 33599999999994 557778999
Q ss_pred CCcEEEEecCC-CcHHHHHHHHHcC-CEE--EEeCCCCChHHHHHHHHHHhhcCC-----CeEecCCCCCCchHHHHHhh
Q 025563 101 GYKLIIVMPSI-ASMERRIVLRALG-AEV--YLADQAGGFEGILRKGEEILSNTP-----NGFMFRQFENPANPKIHYET 171 (251)
Q Consensus 101 G~~~~ivvp~~-~~~~~~~~~~~~G-a~v--~~v~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~n~~~~~~g~~t 171 (251)
|++++||||++ +++.|+.+++.+| ++| +.+++ +|+++.+.+++++++.+ +.++++. .|+..+ .||.|
T Consensus 162 Gi~~~I~~P~~~~s~~k~~~~~~~gganV~vv~v~g--~fdda~~~~k~~~~d~~~~~~~~~~~vns-in~~ri-~GQ~T 237 (468)
T 4f4f_A 162 NTDIFILFPNGRVSPVQQRQMTSSGFSNVHALSIEG--NFDDCQNLVKGMFNDLEFCDALSLSGVNS-INWARI-MPQVV 237 (468)
T ss_dssp SEEEEEEEETTCSCHHHHHHHHCSCCTTEEEEEEES--CHHHHHHHHHHHHHCHHHHHHHTEEECCT-TSHHHH-GGGHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhcCCCeEEEeecCC--CHHHHHHHHHHHHhccccccccceEeCCC-CCHHHH-HhHHH
Confidence 99999999998 9999999999997 455 66666 69999999998877641 4566766 588888 49999
Q ss_pred HHHHHhhhhCCCCCE---EEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 172 TGPEIWKDSGGDVDI---LVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 172 ~~~EI~~q~~~~~d~---vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
++.||++|+. .+|. |+||+|+||+++|++.+.+.-.|..|+++| +.+++++.
T Consensus 238 ~~~Ei~~ql~-~~d~~v~vvVPvG~GG~i~g~~~Ak~mGlPi~kli~a-~n~~~~l~ 292 (468)
T 4f4f_A 238 YYFTAALSLG-APDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIA-TNDNDILS 292 (468)
T ss_dssp HHHHHHHHTT-TTSSCEEEEEECSSSHHHHHHHHHHHHTCCEEEEEEE-ECSCCHHH
T ss_pred HHHHHHHhcc-cCCCCeEEEEEeCCcHHHHHHHHHHHhCCCCCEEEEE-eCCchHHH
Confidence 9999999994 7898 999999999999999884433467799999 88888764
|
| >3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=233.22 Aligned_cols=187 Identities=13% Similarity=0.049 Sum_probs=152.5
Q ss_pred CcceecccccccCCceEEEEeCCCCCCCchhhHHHHHH---HHHHHH-cCCCCCCCeEEEEeccChHHHHHHHHHH-HCC
Q 025563 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSM---IKDAEE-KGLITPGKSVLIETTGGNTGIGLAFIAA-LRG 101 (251)
Q Consensus 27 TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~---l~~a~~-~g~~~~g~~~vv~~ssGN~g~alA~~a~-~~G 101 (251)
|||+++..- .+.++|+|.|+.|||||||||++..+ +..+.+ +|. ..+|+++||||||.|.|++++ +.|
T Consensus 103 ~Pl~~l~~~---~~~~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~~g~----~~~Vv~ASSGNtG~Aaa~a~~~~~G 175 (487)
T 3v7n_A 103 TPLTTLGTE---NGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGE----TLNILGATSGDTGSAAEYAMRGKEG 175 (487)
T ss_dssp SCEEEEEEE---TTEEEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHTTTC----CEEEEEECSSHHHHHHHHHHTTCTT
T ss_pred ceeEEecCC---CCcceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHhcCC----CcEEEEeCChHHHHHHHHHHHhccC
Confidence 799887420 01249999999999999999999998 777754 443 334999999999999777776 899
Q ss_pred CcEEEEecCC-CcHHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHhhcC-----CCeEecCCCCCCchHHHHHhhH
Q 025563 102 YKLIIVMPSI-ASMERRIVLRALGA---EVYLADQAGGFEGILRKGEEILSNT-----PNGFMFRQFENPANPKIHYETT 172 (251)
Q Consensus 102 ~~~~ivvp~~-~~~~~~~~~~~~Ga---~v~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~ 172 (251)
++++||+|++ +++.|+++|+.+|+ +++.+++ ++++|.+.++++.++. -+..+++.+ |+.+++ |+.+.
T Consensus 176 i~~~I~~P~~~~s~~k~~qm~~~Ga~nv~vv~v~G--~fDda~~~vk~~~~d~~~~~~~~l~~vns~-Np~ri~-gQ~ty 251 (487)
T 3v7n_A 176 VRVFMLSPHKKMSAFQTAQMYSLQDPNIFNLAVNG--VFDDCQDIVKAVSNDHAFKAQQKIGTVNSI-NWARVV-AQVVY 251 (487)
T ss_dssp EEEEEEEETTCSCHHHHHHHHTCCCTTEEEEEEES--CHHHHHHHHHHHHTCHHHHHHTTEECCSTT-CHHHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCcEEEEEECC--CHHHHHHHHHHhhhchHHHhhcCeeeeCCC-CHHHHH-hHHHH
Confidence 9999999997 99999999999998 7888877 6999999998887631 156777765 788885 99988
Q ss_pred HHHHhhhhC---CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 173 GPEIWKDSG---GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 173 ~~EI~~q~~---~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
++|+..|+. +.+|+|++|+|+||+++|++.+.+.-.|.+|+|+|++++ +++.
T Consensus 252 y~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~mGlp~~rli~a~~~n-~~l~ 306 (487)
T 3v7n_A 252 YFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNEN-DVLD 306 (487)
T ss_dssp HHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHHTTCCEEEEEEECTTC-HHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHHcCCCCceEEEEeCCC-cHHH
Confidence 888888873 359999999999999999987755444777999999998 5543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.44 Score=35.60 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=39.5
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
++..+.|..|..+|...+..|.+++++-. .+.+++.++..|.+++.-+.
T Consensus 10 viIiG~G~~G~~la~~L~~~g~~v~vid~---~~~~~~~~~~~g~~~i~gd~ 58 (140)
T 3fwz_A 10 ALLVGYGRVGSLLGEKLLASDIPLVVIET---SRTRVDELRERGVRAVLGNA 58 (140)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEESCT
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHcCCCEEECCC
Confidence 77778899999999999999999888743 45677777778888766554
|
| >1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=93.42 E-value=0.75 Score=36.87 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=58.4
Q ss_pred CCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEe-------cC--CCcHHHHHHHH
Q 025563 51 EPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVM-------PS--IASMERRIVLR 121 (251)
Q Consensus 51 ~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivv-------p~--~~~~~~~~~~~ 121 (251)
+|.--+=+..+...+..|.+.|. +..||.+++|.++..++-.. .|++.++|. |. ..+++..+.++
T Consensus 22 ~~G~eNT~~tl~la~era~e~~I----k~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~ 95 (201)
T 1vp8_A 22 KPGRENTEETLRLAVERAKELGI----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELR 95 (201)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCC----CEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence 44556667788888888988885 34466666799987766643 688988887 32 35789999999
Q ss_pred HcCCEEEEeCCC
Q 025563 122 ALGAEVYLADQA 133 (251)
Q Consensus 122 ~~Ga~v~~v~~~ 133 (251)
..|.+|+.-...
T Consensus 96 ~~G~~V~t~tH~ 107 (201)
T 1vp8_A 96 KRGAKIVRQSHI 107 (201)
T ss_dssp HTTCEEEECCCT
T ss_pred hCCCEEEEEecc
Confidence 999999998753
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.62 E-value=1.3 Score=38.09 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=49.6
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCC
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~ 135 (251)
+.......+|++ |+...+|.-|...+..++.+|.+.++.+. .++.|++.++.+||+.+.-....+
T Consensus 152 ~~~~~~~~~g~~-VlV~GaG~vG~~aiq~ak~~G~~~vi~~~--~~~~k~~~a~~lGa~~~i~~~~~~ 216 (346)
T 4a2c_A 152 AFHLAQGCENKN-VIIIGAGTIGLLAIQCAVALGAKSVTAID--ISSEKLALAKSFGAMQTFNSSEMS 216 (346)
T ss_dssp HHHHTTCCTTSE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEETTTSC
T ss_pred HHHHhccCCCCE-EEEECCCCcchHHHHHHHHcCCcEEEEEe--chHHHHHHHHHcCCeEEEeCCCCC
Confidence 345556677888 55556788999999999999999888774 457889999999998777655433
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=1.7 Score=37.25 Aligned_cols=62 Identities=24% Similarity=0.217 Sum_probs=46.4
Q ss_pred HHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 67 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
.+++...+++|++.+| .++|..|.+.+..|+.+|.+++++. .++.+++.++.+|++.+.-..
T Consensus 157 ~~l~~~~~~~g~~VlV-~GaG~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~~i~~~ 218 (340)
T 3s2e_A 157 KGLKVTDTRPGQWVVI-SGIGGLGHVAVQYARAMGLRVAAVD---IDDAKLNLARRLGAEVAVNAR 218 (340)
T ss_dssp HHHHTTTCCTTSEEEE-ECCSTTHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHcCCCCCCEEEE-ECCCHHHHHHHHHHHHCCCeEEEEe---CCHHHHHHHHHcCCCEEEeCC
Confidence 3455666778888555 5568899999999999999765543 356888899999998765543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=1.1 Score=38.24 Aligned_cols=59 Identities=27% Similarity=0.275 Sum_probs=45.0
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+...+++|++.+|...+|.-|.+.+..++..|.+++++.. ++.+++.++.+|++.+.-.
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~ 192 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS---SPEKAAHAKALGAWETIDY 192 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEET
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEeC
Confidence 4456778888566665899999999999999997665543 5678888889998765543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.91 E-value=1.7 Score=38.18 Aligned_cols=58 Identities=26% Similarity=0.321 Sum_probs=43.4
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+++...+++|++.+| .++|.-|...+..|+.+|.+.++.+. .++.+++.++.+||+++
T Consensus 177 al~~~~~~~g~~VlV-~GaG~vG~~aiqlAk~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~i 234 (398)
T 1kol_A 177 GAVTAGVGPGSTVYV-AGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIA 234 (398)
T ss_dssp HHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEE
T ss_pred HHHHcCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCCeEEEEc--CCHHHHHHHHHcCCcEE
Confidence 344556778888555 55799999999999999996555542 35788899999999844
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=1.7 Score=37.18 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=45.3
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+...+++|++.+|...+|.-|.+.+..++..|.+++++.. ++.+++.++.+|++.+....
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~~~~ 201 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS---TDEKLKIAKEYGAEYLINAS 201 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEEeCC
Confidence 3456778888556655899999999999999998665543 46788888999988665443
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.09 E-value=1.9 Score=37.34 Aligned_cols=60 Identities=22% Similarity=0.182 Sum_probs=45.9
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+...+++|++.+|...+|.-|.+++..++..|.+++++. .++.+++.++.+|++.+....
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~~~~~~ 220 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATA---GSTGKCEACERLGAKRGINYR 220 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHHTCSEEEETT
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHhcCCCEEEeCC
Confidence 456677888866666789999999999999999855543 246788888889998665443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.86 E-value=2.5 Score=36.10 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=45.0
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHH-HHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVL-RALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~-~~~Ga~v~~v~ 131 (251)
+...+++|++.+|...+|.-|.+++..++..|.+++++. .++.+++.+ +.+|++.+.-.
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~---~~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIA---GGAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHTTCCSEEEET
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHHcCCCEEEEC
Confidence 566778888866666669999999999999999766553 245777777 88999765443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=2 Score=37.56 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=45.0
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+++...+++|++.+| .++|..|.+.+..|+.+|.+-++.+ +.++.+++.++.+|++.+.-.
T Consensus 174 ~l~~~~~~~g~~VlV-~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~ 234 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAI-LGGGVIGLLTVQLARLAGATTVILS--TRQATKRRLAEEVGATATVDP 234 (370)
T ss_dssp HHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEECT
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEECC
Confidence 345556778888555 4569999999999999999555555 334678889999999866543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=90.45 E-value=2.7 Score=36.51 Aligned_cols=57 Identities=28% Similarity=0.316 Sum_probs=44.0
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...+++|++.+|.. +|.-|.+.+..|+.+|.+++++. .++.+++.++.+|++.+.-
T Consensus 183 ~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi~ 239 (363)
T 3uog_A 183 EKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTS---SSREKLDRAFALGADHGIN 239 (363)
T ss_dssp TTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEe---cCchhHHHHHHcCCCEEEc
Confidence 456678888855555 89999999999999999766553 3467888899999976554
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=2.7 Score=36.48 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=44.1
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+.+.+++|++.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+.-.
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~ 215 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS---SDEKSAFLKSLGCDRPINY 215 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHcCCcEEEec
Confidence 3456778888555555799999999999999997555543 3678888889999865543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=90.00 E-value=1.8 Score=37.40 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=43.8
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCC-cEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGY-KLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+++...+++|++.+|. ++|.-|.+.+..|+.+|. ++++ + +.++.+++.++.+||+.+.-
T Consensus 158 al~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~~Vi~-~--~~~~~~~~~~~~lGa~~vi~ 217 (352)
T 3fpc_A 158 GAELANIKLGDTVCVI-GIGPVGLMSVAGANHLGAGRIFA-V--GSRKHCCDIALEYGATDIIN 217 (352)
T ss_dssp HHHHTTCCTTCCEEEE-CCSHHHHHHHHHHHTTTCSSEEE-E--CCCHHHHHHHHHHTCCEEEC
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEE-E--CCCHHHHHHHHHhCCceEEc
Confidence 4456667788885555 579999999999999998 4544 3 34467888999999975543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.87 E-value=2.2 Score=36.28 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=45.4
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+++...+++|++.+|...+|.-|.+.+..|+.+|.+++++. +..+++.++.+|++-+.-.
T Consensus 144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~----~~~~~~~~~~lGa~~~i~~ 203 (321)
T 3tqh_A 144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA----SKRNHAFLKALGAEQCINY 203 (321)
T ss_dssp HHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----CHHHHHHHHHHTCSEEEET
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe----ccchHHHHHHcCCCEEEeC
Confidence 44667788888855555589999999999999999766553 3456888899999865443
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=1.3 Score=38.78 Aligned_cols=53 Identities=21% Similarity=0.102 Sum_probs=41.0
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
.+|++.+|...+|..|.+.+..|+.+|.++++++ ++.+++.++.+|++.+.-.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~vi~~ 215 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC----SPHNFDLAKSRGAEEVFDY 215 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEET
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CHHHHHHHHHcCCcEEEEC
Confidence 5778756666669999999999999999876654 3567888999999755543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.66 E-value=1.9 Score=37.19 Aligned_cols=59 Identities=25% Similarity=0.397 Sum_probs=44.2
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+...+++|++.+|...+|.-|.+++..++..|.+++++... +.+++.++.+|++.+.-.
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~v~~~ 211 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNR---TAATEFVKSVGADIVLPL 211 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS---GGGHHHHHHHTCSEEEES
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEecC
Confidence 55667788885666666999999999999999987666543 356677778898866543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=89.66 E-value=2.9 Score=36.01 Aligned_cols=54 Identities=30% Similarity=0.402 Sum_probs=43.5
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEV 127 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v 127 (251)
+...+++|++.+|...+|.-|.+++..++..|.+++++ .++.+++.++.+|++.
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~----~~~~~~~~~~~lGa~~ 197 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT----ARGSDLEYVRDLGATP 197 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE----ECHHHHHHHHHHTSEE
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE----eCHHHHHHHHHcCCCE
Confidence 56677888885666658999999999999999976554 2467888899999998
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.42 E-value=3.4 Score=36.96 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=40.7
Q ss_pred EEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
|+..+.|..|..+|...+..|++++++ +..+.+++.++..|.+++.-+..
T Consensus 7 viIiG~Gr~G~~va~~L~~~g~~vvvI---d~d~~~v~~~~~~g~~vi~GDat 56 (413)
T 3l9w_A 7 VIIAGFGRFGQITGRLLLSSGVKMVVL---DHDPDHIETLRKFGMKVFYGDAT 56 (413)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEE---ECCHHHHHHHHHTTCCCEESCTT
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEE---ECCHHHHHHHHhCCCeEEEcCCC
Confidence 788888999999999999999998887 34467788888888877666553
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=89.19 E-value=2 Score=36.95 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=44.3
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
.+...+++|++.+|...+|.-|.+.+..++.+|.+++++.... .+++.++.+|++.+.-..
T Consensus 137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~---~~~~~~~~lga~~~~~~~ 197 (340)
T 3gms_A 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN---KHTEELLRLGAAYVIDTS 197 (340)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS---TTHHHHHHHTCSEEEETT
T ss_pred HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHhCCCcEEEeCC
Confidence 3556678888866666667999999999999999876665433 456667778998655433
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.25 E-value=4.1 Score=35.35 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=43.2
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+...+++|++.+|. ++|.-|.+.+..|+.+|.+.++.+. .++.+++.++.+|++.+.-.
T Consensus 184 ~~~~~~~g~~VlV~-GaG~vG~~a~qlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~ 242 (371)
T 1f8f_A 184 NALKVTPASSFVTW-GAGAVGLSALLAAKVCGASIIIAVD--IVESRLELAKQLGATHVINS 242 (371)
T ss_dssp TTTCCCTTCEEEEE-SCSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHHHTCSEEEET
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCCEEecC
Confidence 45567788885555 5799999999999999986444442 34678888899999765543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.91 E-value=3.2 Score=36.60 Aligned_cols=57 Identities=30% Similarity=0.411 Sum_probs=42.9
Q ss_pred CCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 73 ~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
.+.+|++.+| .++|.-|.+.+..|+.+|.+-++.+ +.++.+++.++.+||+.+.-..
T Consensus 210 ~~~~g~~VlV-~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~~~ 266 (404)
T 3ip1_A 210 GIRPGDNVVI-LGGGPIGLAAVAILKHAGASKVILS--EPSEVRRNLAKELGADHVIDPT 266 (404)
T ss_dssp CCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEECTT
T ss_pred CCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEEcCC
Confidence 5778888555 4569999999999999999545544 3357888999999998665443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=6.4 Score=33.47 Aligned_cols=57 Identities=26% Similarity=0.375 Sum_probs=42.8
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+.+|++.+|...+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+.
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~~~ 195 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAF 195 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 4556777888677776799999999999999997665532 35677777888986543
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=87.80 E-value=2.5 Score=35.26 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=51.6
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++--|+++|..-.+.|.+++++-.........+.++..|.++..+ +-. +.++..+..++..++.
T Consensus 7 gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~-~~~~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 7 DKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQ-DDAQCRDAVAQTIATF 81 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTT-CHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecC-CHHHHHHHHHHHHHHh
Confidence 466788888899999999999999999888776655556666777777665554 433 4555555555555544
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=4.7 Score=34.78 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=43.4
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+...+.+|++.+|...+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+.-
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~~ 213 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG---SQKKLQMAEKLGAAAGFN 213 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 4556778888566666899999999999999997655442 357777788899875543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.72 E-value=7.9 Score=29.69 Aligned_cols=49 Identities=20% Similarity=0.094 Sum_probs=37.9
Q ss_pred EEEeccChHHHHHHHHHHHC-CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 81 LIETTGGNTGIGLAFIAALR-GYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 81 vv~~ssGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
++..+.|..|..+|...+.. |.+++++-. ++.+.+.++..|.+++..+.
T Consensus 42 v~IiG~G~~G~~~a~~L~~~~g~~V~vid~---~~~~~~~~~~~g~~~~~gd~ 91 (183)
T 3c85_A 42 VLILGMGRIGTGAYDELRARYGKISLGIEI---REEAAQQHRSEGRNVISGDA 91 (183)
T ss_dssp EEEECCSHHHHHHHHHHHHHHCSCEEEEES---CHHHHHHHHHTTCCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHhccCCeEEEEEC---CHHHHHHHHHCCCCEEEcCC
Confidence 66667899999999999998 999887642 35677777788888766554
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=87.62 E-value=2.8 Score=36.15 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=38.4
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
++.+|...+|.-|.+.+..|+.+|.+++++.. ++.+++.++.+|++.+.-..
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~~ 217 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVR---RDEQIALLKDIGAAHVLNEK 217 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---CGGGHHHHHHHTCSEEEETT
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEECC
Confidence 45455668899999999999999997666543 34567777889997655443
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.52 E-value=4 Score=35.69 Aligned_cols=54 Identities=30% Similarity=0.338 Sum_probs=40.4
Q ss_pred CCCeEEEEe-ccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 76 PGKSVLIET-TGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 76 ~g~~~vv~~-ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+|++.+|.. .+|..|.+.+..|+.+|.+++++. .++.+++.++.+|++.+.-..
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~~~~~~ 224 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIV---RKQEQADLLKAQGAVHVCNAA 224 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEE---SSHHHHHHHHHTTCSCEEETT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHhCCCcEEEeCC
Confidence 345545653 789999999999999999866654 357888999999997555433
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=87.36 E-value=6.2 Score=33.88 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=40.5
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
+|++.+|...+|.-|.+.+..++.+|.+++++. .++.+++.++.+|++.+..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi~ 201 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTA---SRNETIEWTKKMGADIVLN 201 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEC---CSHHHHHHHHHHTCSEEEC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHhcCCcEEEE
Confidence 677766666789999999999999999755543 3467888888899876544
|
| >1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=87.24 E-value=2.7 Score=33.72 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=55.2
Q ss_pred CCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEe-------cC--CCcHHHHHHHH
Q 025563 51 EPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVM-------PS--IASMERRIVLR 121 (251)
Q Consensus 51 ~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivv-------p~--~~~~~~~~~~~ 121 (251)
+|.--+=+..+...+..|.+.|. +..||.+++|.++..++-.. -| +.++|. |. ..+++..+.++
T Consensus 30 ~~G~eNT~~tl~la~era~e~~I----k~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~ 102 (206)
T 1t57_A 30 EPGKENTERVLELVGERADQLGI----RNFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDALL 102 (206)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCC----CEEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence 45556677788888888988885 34466666699987665533 45 777666 32 35789999999
Q ss_pred HcCCEEEEeCCC
Q 025563 122 ALGAEVYLADQA 133 (251)
Q Consensus 122 ~~Ga~v~~v~~~ 133 (251)
..|.+|+.-...
T Consensus 103 ~~G~~V~t~tH~ 114 (206)
T 1t57_A 103 ERGVNVYAGSHA 114 (206)
T ss_dssp HHTCEEECCSCT
T ss_pred hCCCEEEEeecc
Confidence 999999987653
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.21 E-value=7.6 Score=33.46 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=42.9
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
...+++|++.+|...+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+.
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~ 220 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVF 220 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---ChhHHHHHHHcCCCEEE
Confidence 566778888666666799999999999999997655542 35677788889987544
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.14 E-value=5.3 Score=34.22 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=43.1
Q ss_pred HHHc-CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 68 AEEK-GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 68 a~~~-g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
++.+ ..+++|++.+|...+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 157 al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~ga~~~ 215 (343)
T 2eih_A 157 MVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAG---SEDKLRRAKALGADET 215 (343)
T ss_dssp HHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCCEE
Confidence 4443 45677888666666699999999999999997665543 3577777888898754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=86.95 E-value=6.7 Score=30.43 Aligned_cols=55 Identities=31% Similarity=0.493 Sum_probs=39.8
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
...+.+|++.+|...+|..|.+++..++..|.+++++.. ++.+.+.++.+|++.+
T Consensus 33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~~ 87 (198)
T 1pqw_A 33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYV 87 (198)
T ss_dssp TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEE
T ss_pred HhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 455677887555555799999999999999987665542 3566667777887643
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=86.89 E-value=3.6 Score=35.59 Aligned_cols=60 Identities=27% Similarity=0.336 Sum_probs=45.7
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~ 129 (251)
+...+++|++.+|...+|.-|.+.+..|+.+|.+.++++.... ...+++.++.+||+-+.
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI 221 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEE
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEE
Confidence 4456778888555555699999999999999999888775543 35577888999997554
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.62 E-value=7.5 Score=33.57 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=41.4
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHC-CCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALR-GYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
..+++|++ |+..++|.-|...+..|+.+ |.+++++. .++.+++.++.+||+.+.-.
T Consensus 182 ~~~~~g~~-VlV~GaG~vG~~avqlak~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 182 RTLYPGAY-VAIVGVGGLGHIAVQLLKVMTPATVIALD---VKEEKLKLAERLGADHVVDA 238 (359)
T ss_dssp TTCCTTCE-EEEECCSHHHHHHHHHHHHHCCCEEEEEE---SSHHHHHHHHHTTCSEEEET
T ss_pred cCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEEe---CCHHHHHHHHHhCCCEEEec
Confidence 56778888 44455589999999999999 98754443 24678888999999765443
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=6.7 Score=33.62 Aligned_cols=60 Identities=27% Similarity=0.281 Sum_probs=43.4
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHC-CCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALR-GYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
++++..+++|++.+|...+|..|.+++..++.. |.+++++.. ++.+++.++.+|++.+.-
T Consensus 162 ~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~~ 222 (347)
T 1jvb_A 162 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV---REEAVEAAKRAGADYVIN 222 (347)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCCEEec
Confidence 344456777888666666669999999999999 997555432 356777788899875543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=86.30 E-value=5.9 Score=33.74 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=41.6
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
...+++|++.+|...+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+.
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~g~~~~~ 195 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVS---TEEKAETARKLGCHHTI 195 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 456778888566655799999999999999997665543 35677777888887543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.04 E-value=5.7 Score=34.16 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=41.8
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
++...+++|++.+|. ++|.-|.+.+..|+.+|.+ ++.+. .++.+++.++.+|++.+.
T Consensus 161 l~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~-Vi~~~--~~~~~~~~~~~lGa~~~~ 217 (352)
T 1e3j_A 161 CRRAGVQLGTTVLVI-GAGPIGLVSVLAAKAYGAF-VVCTA--RSPRRLEVAKNCGADVTL 217 (352)
T ss_dssp HHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCE-EEEEE--SCHHHHHHHHHTTCSEEE
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCE-EEEEc--CCHHHHHHHHHhCCCEEE
Confidence 344456778885554 4699999999999999998 44432 346788889999997544
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=86.00 E-value=3.6 Score=35.58 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=42.6
Q ss_pred CCCCCC-CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEE
Q 025563 72 GLITPG-KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYL 129 (251)
Q Consensus 72 g~~~~g-~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~ 129 (251)
+.+++| ++.+|...+|.-|.+.+..|+.+|.++++++..... ..+.+.++.+||+.+.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI 221 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEE
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEE
Confidence 467788 775555556999999999999999988777754433 3445667889997544
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.86 E-value=6.7 Score=33.23 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=41.9
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
...+.+|++.+|...+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+.
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~g~~~~~ 190 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVI 190 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 556778888666666899999999999999997665543 35677777778887543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.75 E-value=7.9 Score=33.17 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=42.4
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
++++..+.+|++.+|...+|..|.+++..++..|.+++++... +.+++.++.+|++.+.
T Consensus 161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~---~~~~~~~~~~g~~~~~ 219 (347)
T 2hcy_A 161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG---EGKEELFRSIGGEVFI 219 (347)
T ss_dssp HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS---TTHHHHHHHTTCCEEE
T ss_pred HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCC---HHHHHHHHHcCCceEE
Confidence 4444456778886777777999999999999999976665432 3455667778987443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.48 E-value=4 Score=35.59 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=41.2
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+++|++.+|. ++|.-|.+.+..|+.+|.+-++.+. .++.+++.++.+||+.+.
T Consensus 187 ~~~~~~~g~~VlV~-GaG~vG~~a~q~a~~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi 243 (378)
T 3uko_A 187 NTAKVEPGSNVAIF-GLGTVGLAVAEGAKTAGASRIIGID--IDSKKYETAKKFGVNEFV 243 (378)
T ss_dssp TTTCCCTTCCEEEE-CCSHHHHHHHHHHHHHTCSCEEEEC--SCTTHHHHHHTTTCCEEE
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCcEEE
Confidence 55667788884554 5699999999999999994344442 234677888999997644
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=85.29 E-value=7.6 Score=33.28 Aligned_cols=57 Identities=33% Similarity=0.404 Sum_probs=41.8
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCC-cEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGY-KLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
++++..+ +|++.+|... |.-|.+++..++.+|. +++++.. ++.+++.++.+|++.+.
T Consensus 160 ~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~---~~~~~~~~~~~Ga~~~~ 217 (348)
T 2d8a_A 160 TVLAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEP---SDFRRELAKKVGADYVI 217 (348)
T ss_dssp HHTTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECS---CHHHHHHHHHHTCSEEE
T ss_pred HHHhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEEE
Confidence 3455556 7887555554 9999999999999998 6655432 36788888899997554
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=85.19 E-value=9.6 Score=32.70 Aligned_cols=57 Identities=28% Similarity=0.471 Sum_probs=41.9
Q ss_pred HcCCCCCC--CeEEEEeccChHHHHHHHHHHHCCC-cEEEEecCCCcHHHHHHHHH-cCCEEEE
Q 025563 70 EKGLITPG--KSVLIETTGGNTGIGLAFIAALRGY-KLIIVMPSIASMERRIVLRA-LGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g--~~~vv~~ssGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~~~~-~Ga~v~~ 129 (251)
+...+++| ++.+|...+|.-|.+++..++..|. +++++.. ++.+++.++. +|++.+.
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~---~~~~~~~~~~~~g~~~~~ 212 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG---THEKCILLTSELGFDAAI 212 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTSCCSEEE
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeC---CHHHHHHHHHHcCCceEE
Confidence 45667778 7766666669999999999999999 6655543 3567777776 8986543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=85.15 E-value=2.3 Score=38.22 Aligned_cols=57 Identities=28% Similarity=0.321 Sum_probs=45.1
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
..+++|++.+|...+|..|.+.+..|+.+|.+++++.. ++.+++.++.+|++.+.-.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~---~~~~~~~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS---SPQKAEICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHhhCCcEEEec
Confidence 45678888555555599999999999999998777663 5788999999999866543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.04 E-value=5.2 Score=34.93 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=43.2
Q ss_pred HHHcCC-CCCCCeEEEEeccChHHHHHHHHHHHCC-CcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 68 AEEKGL-ITPGKSVLIETTGGNTGIGLAFIAALRG-YKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 68 a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~G-~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
++++.. +++|++.+|.. +|.-|.+.+..|+.+| .+++++.+ ++.+++.++.+|++.+.
T Consensus 186 al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~vi 245 (380)
T 1vj0_A 186 AFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAG---SPNRLKLAEEIGADLTL 245 (380)
T ss_dssp HHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEES---CHHHHHHHHHTTCSEEE
T ss_pred HHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcC---CHHHHHHHHHcCCcEEE
Confidence 344555 67788855555 8999999999999999 46655542 46788888999997544
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=84.80 E-value=1.7 Score=36.90 Aligned_cols=58 Identities=22% Similarity=0.154 Sum_probs=43.8
Q ss_pred HHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 67 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+++...+++|++.+|... |.-|.+.+..|+.+|.+++++. ++.+++.++.+|++.+.
T Consensus 133 ~al~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~ 190 (315)
T 3goh_A 133 QAFEKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS----ASLSQALAAKRGVRHLY 190 (315)
T ss_dssp HHHTTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC----SSCCHHHHHHHTEEEEE
T ss_pred HHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE----ChhhHHHHHHcCCCEEE
Confidence 3456677788888555555 9999999999999999766654 34577778889997665
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=84.69 E-value=7 Score=31.75 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=46.9
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|.-|+++|..-.+.|.+++++..... ....+.++..|.++..+..+ .+.++..+..++..++
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 76 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP-APALAEIARHGVKAVHHPADLSDVAQIEALFALAERE 76 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345688888899999999999999998777654333 45556677678777665432 2334444444444443
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=84.59 E-value=8.1 Score=33.87 Aligned_cols=57 Identities=28% Similarity=0.237 Sum_probs=41.8
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCC-cEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGY-KLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
+++...+++|++.+| .++|.-|...+..|+.+|. +++++. .++.+++.++.+|++++
T Consensus 177 al~~~~~~~g~~VlV-~GaG~vG~~aiqlak~~Ga~~Vi~~~---~~~~~~~~a~~lGa~~i 234 (398)
T 2dph_A 177 GCVSAGVKPGSHVYI-AGAGPVGRCAAAGARLLGAACVIVGD---QNPERLKLLSDAGFETI 234 (398)
T ss_dssp HHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHHTCSEEEEEE---SCHHHHHHHHTTTCEEE
T ss_pred HHHHcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHcCCcEE
Confidence 345566778888455 4569999999999999998 444433 24678888999999744
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=84.30 E-value=4.1 Score=35.00 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=41.8
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
++.+..+++|++.+| .++|.-|.+.+..|+.+|.+++++.. ++.+++.++.+|++.+.
T Consensus 168 ~l~~~~~~~g~~VlV-~GaG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~v~ 225 (348)
T 3two_A 168 PLKFSKVTKGTKVGV-AGFGGLGSMAVKYAVAMGAEVSVFAR---NEHKKQDALSMGVKHFY 225 (348)
T ss_dssp HHHHTTCCTTCEEEE-ESCSHHHHHHHHHHHHTTCEEEEECS---SSTTHHHHHHTTCSEEE
T ss_pred HHHhcCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCeec
Confidence 344445778888555 55699999999999999997555432 33566778889997655
|
| >3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=84.22 E-value=15 Score=29.79 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=52.7
Q ss_pred EEEEeCCCCCh---HHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHH
Q 025563 126 EVYLADQAGGF---EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGR 202 (251)
Q Consensus 126 ~v~~v~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~ 202 (251)
+|..+.+..+. .++.+-.++..+++|+.-+..........+.++. ...+++++- +++|+|||. +...+.|+..
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~~ai~~~--~d~~a~g~~~ 212 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSER-VMRQVIDSG-IPFDAVYCH--NDDIAMGVLE 212 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHH-HHHHHHHTT-CCCSEEEES--SHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHH-HHHHHHHhC-CCCCEEEEC--CchHHHHHHH
Confidence 67666543222 2344444555555545433221112223333443 344555543 578999875 5667779999
Q ss_pred HHHhhCC-CcEEEEEeCCC
Q 025563 203 FLKEKNP-NIKVYGVEPTE 220 (251)
Q Consensus 203 ~~~~~~~-~~~vigVep~~ 220 (251)
++++.+- ++.|+|.+-..
T Consensus 213 al~~~g~~di~vig~d~~~ 231 (293)
T 3l6u_A 213 ALKKAKISGKIVVGIDGNR 231 (293)
T ss_dssp HHHHTTCCCCEEEEEECCH
T ss_pred HHHhCCCCCeEEEEecCCH
Confidence 9999865 89999998653
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.10 E-value=5.9 Score=34.44 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=41.3
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+++|++.+|...+|.-|.+.+..|+.+|.+++++. ++.+++.++.+|++.+.-..
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~~~~ 235 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC----SQDASELVRKLGADDVIDYK 235 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEETT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe----ChHHHHHHHHcCCCEEEECC
Confidence 67788856666589999999999999998765543 23567778999998655433
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=84.08 E-value=4.1 Score=33.89 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=50.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++--|+++|..-.+.|.+++++-... .-....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45668888889999999999999999876653321 1223456678889888665432 35566666666666654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=83.98 E-value=9.4 Score=31.06 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=49.1
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|--|+++|..-.+.|.+++++.... ......+.++..|.++..+..+ .+.++..+.+++..++
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 35568888889999999999999999877765432 2344556677778887666432 2444555555555444
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=83.82 E-value=24 Score=31.68 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..+|--|.++|..-.+.|.+++++-.........+..+..+.+++.++-. +.++..+...+..++.
T Consensus 213 gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvt-d~~~v~~~~~~~~~~~ 285 (454)
T 3u0b_A 213 GKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVT-ADDAVDKITAHVTEHH 285 (454)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTT-STTHHHHHHHHHHHHS
T ss_pred CCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecC-CHHHHHHHHHHHHHHc
Confidence 456688888899999999998889998666543333333444556678888888765 4455555555555554
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=83.72 E-value=3.9 Score=36.56 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=44.0
Q ss_pred CCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 72 GLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 72 g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
..+.+|++.+|...+|.-|.+.+..++..|.+++++. .++.+++.++.+|++.+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~---~~~~~~~~~~~lGa~~~i 270 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVV---SSAQKEAAVRALGCDLVI 270 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHTTCCCEE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHhcCCCEEE
Confidence 5677888855555569999999999999999877765 357888889999997654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=83.58 E-value=6.1 Score=34.27 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+++|++.+|. ++|.-|.+.+..|+.+|.+-++.+. .++.+++.++.+||+.+.
T Consensus 185 ~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi 241 (373)
T 1p0f_A 185 NTAKVTPGSTCAVF-GLGGVGFSAIVGCKAAGASRIIGVG--THKDKFPKAIELGATECL 241 (373)
T ss_dssp TTTCCCTTCEEEEE-CCSHHHHHHHHHHHHHTCSEEEEEC--SCGGGHHHHHHTTCSEEE
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCcEEE
Confidence 45567788885554 5799999999999999985444442 235677788899997543
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=83.40 E-value=7.4 Score=31.96 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=49.2
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+|--|+++|..-.+.|.+++++..... ...+.++..++..+.++-. +.++..+..++..++.
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 97 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEH--ASVTELRQAGAVALYGDFS-CETGIMAFIDLLKTQT 97 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC--HHHHHHHHHTCEEEECCTT-SHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHhcCCeEEECCCC-CHHHHHHHHHHHHHhc
Confidence 44588888899999999999999999877664432 2245556678888877765 5555555666665554
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=83.38 E-value=11 Score=32.23 Aligned_cols=53 Identities=25% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 73 ~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+++|++.+|... |.-|.+++..++.+|.+++++. .++.+++.++.+|++.+.
T Consensus 161 ~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~~~ 213 (339)
T 1rjw_A 161 GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVD---IGDEKLELAKELGADLVV 213 (339)
T ss_dssp TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEEC---SCHHHHHHHHHTTCSEEE
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHCCCCEEe
Confidence 4667777555544 7799999999999998655443 246788888899997543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.31 E-value=8 Score=31.98 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=44.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHH
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRK 142 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~ 142 (251)
|++.+|+..+|--|+++|....+.|.+++++-.........+.++..|.++..+..+ .+.++..+.
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 97 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANV 97 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHH
Confidence 456688888899999999999999999877763332334456677778877665432 244444443
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=83.28 E-value=11 Score=32.21 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=42.0
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHH-HcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLR-ALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~-~~Ga~v~~ 129 (251)
+...+++|++.+|...+|.-|.+++..++..|.+++++.. ++.+++.++ .+|++.+.
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~~g~~~~~ 206 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAG---SKEKVDLLKTKFGFDDAF 206 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTSCCSEEE
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCceEE
Confidence 4456777888566666799999999999999987555432 457777777 68986543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=83.02 E-value=7.6 Score=33.67 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+++|++.+|. ++|.-|.+.+..|+.+|.+-++.+. .++.+++.++.+|++.+.
T Consensus 189 ~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi 245 (376)
T 1e3i_A 189 NTAKVTPGSTCAVF-GLGCVGLSAIIGCKIAGASRIIAID--INGEKFPKAKALGATDCL 245 (376)
T ss_dssp TTSCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCSEEE
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCcEEE
Confidence 45667788885554 5799999999999999984344442 235677788889997543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=5.5 Score=34.94 Aligned_cols=66 Identities=27% Similarity=0.263 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHH-cCC-CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 59 RIALSMIKDAEE-KGL-ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 59 R~a~~~l~~a~~-~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
|+..+.++.+.+ .|. -..|++ |+..+.||-|..+|..++.+|.+++ +.+.+ ..+.+..+.+|++.+
T Consensus 155 ~Gv~~~~~~~~~~~G~~~L~Gkt-V~I~G~GnVG~~~A~~l~~~GakVv-vsD~~--~~~~~~a~~~ga~~v 222 (355)
T 1c1d_A 155 VGVFEAMKATVAHRGLGSLDGLT-VLVQGLGAVGGSLASLAAEAGAQLL-VADTD--TERVAHAVALGHTAV 222 (355)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTCE-EEEECCSHHHHHHHHHHHHTTCEEE-EECSC--HHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCE-EEEECcCHHHHHHHHHHHHCCCEEE-EEeCC--ccHHHHHHhcCCEEe
Confidence 466667776654 353 235665 8888899999999999999999887 44433 333444556777644
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=82.40 E-value=12 Score=30.86 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=49.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--------cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHh
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--------SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEIL 147 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--------~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~ 147 (251)
+++.+|+..+|--|+++|..-.+.|.+++++..... .......++..|.++..+..+ .+.++..+.+++..
T Consensus 6 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 85 (274)
T 3e03_A 6 GKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAATV 85 (274)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 456688888899999999999999998777764432 134455667778887666432 24455555555555
Q ss_pred hc
Q 025563 148 SN 149 (251)
Q Consensus 148 ~~ 149 (251)
++
T Consensus 86 ~~ 87 (274)
T 3e03_A 86 DT 87 (274)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=82.36 E-value=12 Score=31.74 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHC-CCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALR-GYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+++....++|++ ++..++|.-|...+..++++ |.+++++. .++.|++..+.+|++.+.-...
T Consensus 155 ~l~~~~~~~g~~-VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~---~~~~r~~~~~~~Ga~~~i~~~~ 217 (348)
T 4eez_A 155 AIKVSGVKPGDW-QVIFGAGGLGNLAIQYAKNVFGAKVIAVD---INQDKLNLAKKIGADVTINSGD 217 (348)
T ss_dssp HHHHHTCCTTCE-EEEECCSHHHHHHHHHHHHTSCCEEEEEE---SCHHHHHHHHHTTCSEEEEC-C
T ss_pred eecccCCCCCCE-EEEEcCCCccHHHHHHHHHhCCCEEEEEE---CcHHHhhhhhhcCCeEEEeCCC
Confidence 344445677887 55556677766666666655 66655543 3467889999999987765543
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.89 E-value=7.1 Score=31.75 Aligned_cols=73 Identities=18% Similarity=0.121 Sum_probs=48.4
Q ss_pred CCeEEEEecc--ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHH-HcC-CEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTG--GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLR-ALG-AEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~-~~G-a~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..+ |.-|+++|....+.|.+++++.........++.+. ..| ..++.++-. +.++..+.+++..++.
T Consensus 14 ~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 90 (271)
T 3ek2_A 14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVA-DDAQIDALFASLKTHW 90 (271)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTT-CHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCC-CHHHHHHHHHHHHHHc
Confidence 4566777766 78999999999999999888765544455555553 333 344555544 5556666666666655
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=81.75 E-value=5.1 Score=33.30 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=50.9
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++--|+++|..-.+.|.++++.-... ...+..+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 46668888889999999999999999866643221 1123456678889888877543 34455566666666665
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.72 E-value=9.7 Score=32.97 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+++|++.+|. ++|.-|.+.+..|+.+|.+-++.+. .++.+++.++.+|++.+.
T Consensus 186 ~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~vi 242 (374)
T 1cdo_A 186 NTAKVEPGSTCAVF-GLGAVGLAAVMGCHSAGAKRIIAVD--LNPDKFEKAKVFGATDFV 242 (374)
T ss_dssp TTTCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCCEEE
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEc--CCHHHHHHHHHhCCceEE
Confidence 45567788885555 5799999999999999985444442 235677788889997543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.57 E-value=21 Score=29.34 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=46.0
Q ss_pred CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 78 KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 78 ~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
++.+|+..+|--|+++|..-.+.|.+++++..... .....+.++..|.++..+..+ .+.++..+..++..++
T Consensus 5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 78 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDT 78 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45688888899999999999999999776643321 122345566678877665432 2444555555555444
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=81.49 E-value=9.5 Score=33.01 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+...+++|++.+|. ++|.-|.+.+..|+.+|.+-++.+. .++.+++.++.+|++.+.
T Consensus 185 ~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~vi 241 (374)
T 2jhf_A 185 KVAKVTQGSTCAVF-GLGGVGLSVIMGCKAAGAARIIGVD--INKDKFAKAKEVGATECV 241 (374)
T ss_dssp TTTCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCSEEE
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCceEe
Confidence 45567788885555 4799999999999999985444442 235677778889986443
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=81.43 E-value=8.9 Score=31.76 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=48.5
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|--|+++|....+.|.+++++..... .....+.++..|.++..+..+ .+.++..+.+++..++
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356688888899999999999999999877765432 334455667777666554321 2455555555555544
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=81.36 E-value=8.5 Score=31.81 Aligned_cols=71 Identities=23% Similarity=0.033 Sum_probs=46.9
Q ss_pred CeEEEEeccCh--HHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcC--CEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 78 KSVLIETTGGN--TGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALG--AEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 78 ~~~vv~~ssGN--~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~G--a~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
++.+|+..+|+ -|.++|..-.+.|.+++++.... ....++.++..+ ..++.++-. +.++..+.+++..++.
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~~~~~~~~~Dl~-~~~~v~~~~~~~~~~~ 101 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEFNPAAVLPCDVI-SDQEIKDLFVELGKVW 101 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHGGGCCSEEEECCTT-CHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-HHHHHHHHHHhcCCceEEEeecC-CHHHHHHHHHHHHHHc
Confidence 45577776677 99999999999999877766554 556666665443 344555543 5555566666665554
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=81.16 E-value=7 Score=33.69 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=41.8
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+++...+++|++.+| .++|.-|.+.+..|+.+|.+-++.+. .++.+++.++.+|++.+.
T Consensus 163 al~~~~~~~g~~VlV-~GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi 221 (356)
T 1pl8_A 163 ACRRGGVTLGHKVLV-CGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVL 221 (356)
T ss_dssp HHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEE
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 334455677888555 45799999999999999994344332 346788889999997443
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.79 E-value=9.5 Score=31.18 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=48.4
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..+|--|+++|..-.+.|.+++++..... .....+.++..|.++..+..+ .+.++..+..++..++.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 456688888899999999999999999777654321 122344566677777665432 24455555556665554
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=80.74 E-value=11 Score=30.83 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=48.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..+|--|+++|..-.+.|.+++++...... ....+.++..|.++..+..+ .+.++..+..++..++.
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4566888888999999999999999998877554432 23355666677665544321 24455555555555544
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.73 E-value=13 Score=31.98 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=50.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--------HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHh
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--------MERRIVLRALGAEVYLADQA-GGFEGILRKGEEIL 147 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~ 147 (251)
|++.+|+..+|--|.++|....+.|.+++++...... ....+.++..|.++..+..+ .+.++..+.+++..
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~ 124 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAI 124 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4566888888999999999999999998877644321 24566678888888766432 24455555555555
Q ss_pred hc
Q 025563 148 SN 149 (251)
Q Consensus 148 ~~ 149 (251)
++
T Consensus 125 ~~ 126 (346)
T 3kvo_A 125 KK 126 (346)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.48 E-value=8.4 Score=31.07 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=47.0
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
+++.+|+..+|.-|.++|..-.+.|.+++++..... .....+.++..+.++..+..+ .+.++..+..++..++
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 355688888899999999999999999776643321 122345566678877666432 2444445555555443
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.43 E-value=9.2 Score=30.71 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=48.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+..+|--|.++|....+.|.+++++...... ....+.++..|.++..+..+ .+.++..+..++..++.
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3556888888999999999999999997776543222 23345566677777655432 24455555556665554
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=80.32 E-value=5 Score=33.67 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=40.4
Q ss_pred cCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 71 KGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 71 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+ +++|++.+|...+|..|.+.+..++.+|.+++++... +.+++.++.+|++.+.
T Consensus 121 ~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~~~ 175 (302)
T 1iz0_A 121 AQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEAA 175 (302)
T ss_dssp TT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEEE
T ss_pred hc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhcCCCEEE
Confidence 55 7788885666656999999999999999976665532 3456667778987543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=80.29 E-value=9.3 Score=31.88 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=48.1
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhc
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSN 149 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~ 149 (251)
|++.+|+..+|--|.++|..-.+.|.+++++..... .....+.++..|.+++.+..+ .+.++..+..++..++
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 355688888899999999999999998877664432 122344566778877665432 2445555555555444
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=80.18 E-value=5.6 Score=34.32 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=36.2
Q ss_pred CeEEEEeccChHHHHH-HHHH-HHCCCc-EEEEecCCCcHHHHHHHHHcCCEEE
Q 025563 78 KSVLIETTGGNTGIGL-AFIA-ALRGYK-LIIVMPSIASMERRIVLRALGAEVY 128 (251)
Q Consensus 78 ~~~vv~~ssGN~g~al-A~~a-~~~G~~-~~ivvp~~~~~~~~~~~~~~Ga~v~ 128 (251)
++ |+..++|.-|... +..| +.+|.+ ++++.+......+++.++.+||+.+
T Consensus 174 ~~-VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v 226 (357)
T 2b5w_A 174 SS-AFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV 226 (357)
T ss_dssp CE-EEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE
T ss_pred CE-EEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc
Confidence 66 4444459999998 8899 999998 6665544332337778889999876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 251 | ||||
| d1z7wa1 | 320 | c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C | 3e-57 | |
| d1jbqa_ | 355 | c.79.1.1 (A:) Cystathionine beta-synthase {Human ( | 5e-46 | |
| d1y7la1 | 310 | c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C | 4e-45 | |
| d1o58a_ | 293 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 2e-44 | |
| d1ve1a1 | 302 | c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C | 4e-43 | |
| d1fcja_ | 302 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 2e-40 | |
| d2bhsa1 | 292 | c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C | 5e-37 | |
| d1tdja1 | 331 | c.79.1.1 (A:5-335) Threonine deaminase {Escherichi | 1e-29 | |
| d1wkva1 | 382 | c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C | 2e-29 | |
| d1v71a1 | 318 | c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S | 1e-23 | |
| d1tyza_ | 338 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 3e-20 | |
| d1e5xa_ | 477 | c.79.1.1 (A:) Threonine synthase {Mouse-ear cress | 1e-19 | |
| d1ve5a1 | 310 | c.79.1.1 (A:2-311) Threonine deaminase {Thermus th | 5e-18 | |
| d1f2da_ | 341 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 1e-17 | |
| d1v8za1 | 386 | c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun | 1e-15 | |
| d1j0aa_ | 325 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 1e-15 | |
| d1p5ja_ | 319 | c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa | 5e-15 | |
| d1v7ca_ | 351 | c.79.1.1 (A:) Threonine synthase {Thermus thermoph | 1e-13 | |
| d1qopb_ | 390 | c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S | 2e-13 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 183 bits (464), Expect = 3e-57
Identities = 150/215 (69%), Positives = 179/215 (83%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI SMI DAE+KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGG 135
PG+SVLIE T GNTG+GLAF AA +GYKLII MP+ S ERRI+L A G E+ L D A G
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 136 FEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGG 195
+G + K EEIL+ TPNG+M +QFENPANPKIHYETTGPEIWK +GG +D V+GIGTGG
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 196 TVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
T+TG+G++LKE+N N+K+YGVEP ESA+L+GG+PG
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPG 217
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 155 bits (391), Expect = 5e-46
Identities = 95/218 (43%), Positives = 126/218 (57%), Gaps = 6/218 (2%)
Query: 16 IKKDATQLIGNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
I D + IG+TPMV +N + G + AK E SVKDRI+L MI+DAE G
Sbjct: 34 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 93
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133
+ PG ++ IE T GNTGIGLA AA+RGY+ IIVMP S E+ VLRALGAE+
Sbjct: 94 LKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 152
Query: 134 GGF---EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAG 190
F E + + + PN + Q+ N +NP HY+TT EI + G +D+LVA
Sbjct: 153 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 212
Query: 191 IGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQ 228
+GTGGT+TG R LKEK P ++ GV+P S + +
Sbjct: 213 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEE 250
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Score = 151 bits (382), Expect = 4e-45
Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 5/223 (2%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLI 74
AI D + IGNTP+V L + + K+E P SVK RI +M+ AE+ G +
Sbjct: 1 AIYADNSYSIGNTPLVRLKHFGHNG--NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 58
Query: 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG 134
T GK +++ T GNTGI LA++AA RGYK+ + MP S+ER+ +L LG + L + A
Sbjct: 59 TKGK-EIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 117
Query: 135 GFEGILRKG-EEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGT 193
G +G + K E + S+ M +QFENPANP+IH ETTGPEIWKD+ G VD++VAG+GT
Sbjct: 118 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 177
Query: 194 GGTVTGSGRFLKE-KNPNIKVYGVEPTESAMLNGGQPGRLLFF 235
GG++TG R +K I VEP ES +++ G +
Sbjct: 178 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKP 220
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Score = 149 bits (377), Expect = 2e-44
Identities = 99/212 (46%), Positives = 132/212 (62%), Gaps = 9/212 (4%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80
+LIG+TP+V L+++ +RI KLE P SVKDR AL MI DAE++GL+ G
Sbjct: 5 ERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--- 57
Query: 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGIL 140
++E T GN GI +A I A RG+++I+ MP S+ERR VL+ LGAE+ L G +G +
Sbjct: 58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAV 117
Query: 141 RKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGS 200
K E +S M QFENP N H TTGPEI K +D VAG+GTGGT++G
Sbjct: 118 EKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGV 176
Query: 201 GRFLKEKNPN-IKVYGVEPTESAMLNGGQPGR 231
GR LK N +K+ VEP +S +L+GGQPG+
Sbjct: 177 GRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGK 208
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Score = 146 bits (368), Expect = 4e-43
Identities = 103/211 (48%), Positives = 136/211 (64%), Gaps = 2/211 (0%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK-S 79
IG TP+V L VV+ +A + KLE + P S+KDR A MIKDAEE+G++ PG
Sbjct: 4 EGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQ 63
Query: 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGI 139
V++E T GNTGIGLA IAA RGY+LI+ MP+ S ER+ VL+A GAE+ L D
Sbjct: 64 VIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAA 123
Query: 140 LRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTG 199
+ + FM QF+NPAN + HYETTGPE+++ G +D V G GTGGT+TG
Sbjct: 124 REEALRL-KEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITG 182
Query: 200 SGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
GR+LKE+ P++KV VEP S +L+GG+ G
Sbjct: 183 VGRYLKERIPHVKVIAVEPARSNVLSGGKMG 213
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Score = 139 bits (350), Expect = 2e-40
Identities = 92/207 (44%), Positives = 129/207 (62%), Gaps = 5/207 (2%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLIT 75
I +D + IG+TP+V LN + + RI AK+E P SVK RI +MI DAE++G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGN---GRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGA-EVYLADQAG 134
PG L+E T GNTGI LA++AA RGYKL + MP S+ERR +L+ALGA V G
Sbjct: 60 PGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 135 GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTG 194
I + E + S+ + +QF NPANP+IH +TTGPEIW+D+ G VD+ ++G+GTG
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 195 GTVTGSGRFLKEKNPNIKVYGVEPTES 221
GT+TG R++K + V +
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPT 205
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Score = 130 bits (326), Expect = 5e-37
Identities = 93/209 (44%), Positives = 129/209 (61%), Gaps = 2/209 (0%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSV 80
Q IGNTP+V L + + + KLE P SVKDR ALSMI +AE++G I PG +
Sbjct: 4 EQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVL 63
Query: 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGIL 140
IE T GNTGI LA IAAL+GY++ ++MP S ERR +RA GAE+ L + G EG
Sbjct: 64 -IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGAR 122
Query: 141 RKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGS 200
E+ +N G + QF NP NP HY TTGPEIW+ +GG + V+ +GT GT+TG
Sbjct: 123 DLALEM-ANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGV 181
Query: 201 GRFLKEKNPNIKVYGVEPTESAMLNGGQP 229
RF++E++ + + G++P E + + G +
Sbjct: 182 SRFMREQSKPVTIVGLQPEEGSSIPGIRR 210
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Score = 111 bits (278), Expect = 1e-29
Identities = 54/224 (24%), Positives = 85/224 (37%), Gaps = 13/224 (5%)
Query: 13 KRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKG 72
+ ++ + TP+ + + I K E +P S K R A +M+ E+
Sbjct: 14 RAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQ 73
Query: 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132
+I + GN G+AF +A G K +IVMP+ + + +R G EV
Sbjct: 74 ----KAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVL---L 126
Query: 133 AGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIG 192
G + LS F++P I + T +D + +G
Sbjct: 127 HGANFDEAKAKAIELSQQQGFTWVPPFDHP--MVIAGQGTLALELLQQDAHLDRVFVPVG 184
Query: 193 TGGTVTGSGRFLKEKNPNIKVYGVEPTESAM----LNGGQPGRL 232
GG G +K+ P IKV VE +SA L+ G P L
Sbjct: 185 GGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDL 228
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 111 bits (279), Expect = 2e-29
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 14/217 (6%)
Query: 22 QLIGN---TPMVYLNNVV-DGCVARIAAKLEMMEPC-CSVKDRIALSMIKDAEEKGLITP 76
TP+V + +G R+ KLE P SVKDR A+ +I + +
Sbjct: 88 DFFERGKPTPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEK 143
Query: 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGF 136
G S++ + T N G+ L+ +A L GY+ + +P A +++ R LGA+V + +A
Sbjct: 144 G-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPST 202
Query: 137 EGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDS---GGDVDILVAGIGT 193
+L + + S QF N AN + H T EI+ S G + + +GT
Sbjct: 203 VHLLPRVMKD-SKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGT 261
Query: 194 GGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPG 230
G ++ + +L+ +P+I+ V+P + + G +
Sbjct: 262 SGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRV 298
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 94.6 bits (234), Expect = 1e-23
Identities = 40/202 (19%), Positives = 79/202 (39%), Gaps = 9/202 (4%)
Query: 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
+ + + TP++ + V VA + K E + + K R AL+ + E
Sbjct: 9 ASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEA-- 66
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133
K+ ++ + GN +A A + G I+MP A + + G +V
Sbjct: 67 --QRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVI--MYD 122
Query: 134 GGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGT 193
+ + +E +S + +++ + + T + + G +D L +G
Sbjct: 123 RYKDDREKMAKE-ISEREGLTIIPPYDH--PHVLAGQGTAAKELFEEVGPLDALFVCLGG 179
Query: 194 GGTVTGSGRFLKEKNPNIKVYG 215
GG ++GS + PN +VYG
Sbjct: 180 GGLLSGSALAARHFAPNCEVYG 201
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Score = 85.9 bits (211), Expect = 3e-20
Identities = 42/231 (18%), Positives = 64/231 (27%), Gaps = 23/231 (9%)
Query: 21 TQLIGNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSV---KDRIALSMIKDAEEKGLIT 75
G TP+ L + G + AK E + K R +I +A +G T
Sbjct: 10 PLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDT 69
Query: 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAG- 134
V I N +A +AA G K ++V + + + R ++ A
Sbjct: 70 L---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADV 126
Query: 135 ---------GFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKD-----S 180
GF E + +P G
Sbjct: 127 RLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186
Query: 181 GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGR 231
G D +V TG T G +V GV+ + Q R
Sbjct: 187 GFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITR 237
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 85.4 bits (210), Expect = 1e-19
Identities = 22/188 (11%), Positives = 54/188 (28%), Gaps = 5/188 (2%)
Query: 25 GNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82
GN+ + + + + K + S KD ++ + +
Sbjct: 120 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 179
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRK 142
+ G+T L+ A G I+ +P + +++ + ++ F+G ++
Sbjct: 180 CASTGDTSAALSAYCASAGIPSIVFLP-ANKISMAQLVQPIANGAFVLSIDTDFDGCMKL 238
Query: 143 GEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGR 202
EI N + + + D ++ G G + +
Sbjct: 239 IREI--TAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYK 296
Query: 203 FLKEKNPN 210
K
Sbjct: 297 GFKMCQEL 304
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Score = 79.3 bits (194), Expect = 5e-18
Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 12/212 (5%)
Query: 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGL 73
A + TP++ + R+ K E ++ S K R ALS E
Sbjct: 7 YAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE---- 62
Query: 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133
L+ + GN G+A+ A + G K ++VMP AS ++ RA GAEV
Sbjct: 63 ---NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV- 118
Query: 134 GGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIW--KDSGGDVDILVAGI 191
+ L + F++P + G ++A +
Sbjct: 119 --TAKNREEVARALQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPV 176
Query: 192 GTGGTVTGSGRFLKEKNPNIKVYGVEPTESAM 223
G GG + G +K +P V GVEP +
Sbjct: 177 GGGGLLAGLATAVKALSPTTLVLGVEPEAADD 208
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Score = 78.6 bits (192), Expect = 1e-17
Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 26/228 (11%)
Query: 24 IGNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSV---KDRIALSMIKDAEEKGLITPGK 78
G +P+ LN + G + AK E + K R ++ D E
Sbjct: 13 FGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHL-- 70
Query: 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG 138
V I N +A +AA G K +++ + + G +
Sbjct: 71 -VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADV 129
Query: 139 ILRKG------------------EEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDS 180
+ + + P + + + + +
Sbjct: 130 RVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVEL 189
Query: 181 GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQ 228
G D +V TG T G + + V ++ + ++ Q
Sbjct: 190 GIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 73.4 bits (179), Expect = 1e-15
Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 18/220 (8%)
Query: 27 TPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETT 85
TP+ Y + + A+I K E + + K A+ A+ G ++ ET
Sbjct: 51 TPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTR----LIAETG 106
Query: 86 GGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQAGGF--EGIL 140
G G+ A AL G K+ I M + ++ LGA V + + I
Sbjct: 107 AGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAIN 166
Query: 141 RKGEEILSN-----TPNGFMFRQFENPANPKIHYETTGPEI---WKDSGGDVDILVAGIG 192
+ ++ G + P + G E ++ G + ++
Sbjct: 167 EALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACV 226
Query: 193 TGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRL 232
GG+ + + +K+ GVE + +G L
Sbjct: 227 GGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASL 266
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 72.8 bits (177), Expect = 1e-15
Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 9/216 (4%)
Query: 23 LIGNTPMVYLNNVVDGCVARIAAKLEMM--EPCCSVKDRIALSMIKDAEEKGLITPGKSV 80
+ TP+ YL N+ A + K + + K R ++ DA KG +
Sbjct: 18 IPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVV---I 74
Query: 81 LIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGIL 140
+ N A G I+V+ ++ +L + A ++
Sbjct: 75 TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELM 134
Query: 141 RKGEEI----LSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGT 196
+ EEI ++ + Y EI S D +V G+GGT
Sbjct: 135 KYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGT 194
Query: 197 VTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRL 232
+ G L N +I+ G+ + + L
Sbjct: 195 LAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNL 230
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (172), Expect = 5e-15
Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 7/224 (3%)
Query: 23 LIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLI 82
L TP+ + + K++ +P S K R K ++G +
Sbjct: 4 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAH-----FV 58
Query: 83 ETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRK 142
++ GN G+ A+ A G IV+P L+ GA +
Sbjct: 59 CSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCK--VVGELLDEAFEL 116
Query: 143 GEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGR 202
+ + N P F++P + H I ++ G G
Sbjct: 117 AKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQG 176
Query: 203 FLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246
+ ++ V +E + + L L +
Sbjct: 177 LQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKAL 220
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Score = 67.4 bits (163), Expect = 1e-13
Identities = 40/220 (18%), Positives = 73/220 (33%), Gaps = 17/220 (7%)
Query: 21 TQLIGNTPMVYLNNVV--DGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK 78
+ L G+TP++ L R+ AK E + P S KDR + A E G
Sbjct: 23 SLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAV-- 80
Query: 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG 138
+ GNT A AA G I+V+P+ ++ + + + +
Sbjct: 81 ---ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDA 137
Query: 139 ILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVT 198
+ + T + + +T E+ + G +G G +T
Sbjct: 138 LRLTQK----LTEAFPVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNIT 193
Query: 199 ------GSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRL 232
+ L + ++ G + +A L G+P
Sbjct: 194 AHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVER 233
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Score = 66.8 bits (162), Expect = 2e-13
Identities = 38/207 (18%), Positives = 57/207 (27%), Gaps = 8/207 (3%)
Query: 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86
T + N+ G + K E + + K L A+ G ET
Sbjct: 56 TALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEII----AETGA 111
Query: 87 GNTGIGLAFIAALRGYKLIIVMPSIASM---ERRIVLRALGAEVYLADQAGGFEGILRKG 143
G G+ A +AL G K I M + +R +GAEV +G
Sbjct: 112 GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPV-HSGSATLKDACN 170
Query: 144 EEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRF 203
E + + + A Y T E + G + +
Sbjct: 171 EALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACV 230
Query: 204 LKEKNPNIKVYGVEPTESAMLNGGQPG 230
N S L G +PG
Sbjct: 231 GGGSNAIGMFADFINDTSVGLIGVEPG 257
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 251 | |||
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1ve1a1 | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1o58a_ | 293 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d1v71a1 | 318 | Hypothetical protein C320.14 (SPCC320.14, SPCC330. | 100.0 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1ve5a1 | 310 | Threonine deaminase {Thermus thermophilus [TaxId: | 100.0 | |
| d1p5ja_ | 319 | L-serine dehydratase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1v7ca_ | 351 | Threonine synthase {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1e5xa_ | 477 | Threonine synthase {Mouse-ear cress (Arabidopsis t | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1j0aa_ | 325 | 1-aminocyclopropane-1-carboxylate deaminase {Archa | 100.0 | |
| d1tyza_ | 338 | 1-aminocyclopropane-1-carboxylate deaminase {Pseud | 99.97 | |
| d1f2da_ | 341 | 1-aminocyclopropane-1-carboxylate deaminase {Yeast | 99.97 | |
| d1vb3a1 | 428 | Threonine synthase {Escherichia coli [TaxId: 562]} | 99.7 | |
| d1kl7a_ | 511 | Threonine synthase {Baker's yeast (Saccharomyces c | 98.92 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.72 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.28 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.85 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.67 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.66 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.57 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.51 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.18 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.08 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.04 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.92 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.55 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.49 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.43 | |
| d1vp8a_ | 190 | Hypothetical protein AF0103 {Archaeoglobus fulgidu | 94.33 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.24 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.71 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.59 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.56 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.09 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.82 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.75 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.68 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.06 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.7 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.58 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.15 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.82 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.64 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 90.13 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.94 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 89.83 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.7 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.6 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 88.93 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.74 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 87.92 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 87.91 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.44 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 87.3 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.93 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 86.92 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 86.89 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 86.74 | |
| d1t57a_ | 186 | Hypothetical protein MTH1675 {Methanobacterium the | 86.67 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 86.36 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 85.92 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 85.43 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.28 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 85.26 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 85.25 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 85.23 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.19 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 83.34 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.06 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 82.94 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 82.31 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 82.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.77 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 80.7 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 80.05 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.5e-53 Score=376.33 Aligned_cols=230 Identities=65% Similarity=1.070 Sum_probs=210.4
Q ss_pred HHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFI 96 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 96 (251)
.+.|.+.+|+|||+++++|++.+|++||+|+|++|||||||+|++.+++..|+++|.++.+...+|++|+||||.|+|++
T Consensus 4 ~~~i~~~iG~TPLv~~~~l~~~~g~~i~~K~E~~nptGSfKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~~ 83 (320)
T d1z7wa1 4 AKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFT 83 (320)
T ss_dssp CSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHH
T ss_pred hhhhhhhcCCCCeEECCCcccccCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999887776779999999999999999
Q ss_pred HHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHH
Q 025563 97 AALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEI 176 (251)
Q Consensus 97 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI 176 (251)
|+.+|++|+||||..+++.|+++++.+||+|+.++...+..+....+.+...+.++.+|+++++|+.++.+||.|++.||
T Consensus 84 a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~EI 163 (320)
T d1z7wa1 84 AAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEI 163 (320)
T ss_dssp HHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHH
T ss_pred HHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHhCCCceecccccccchHHHhhhhHHHHH
Confidence 99999999999999999999999999999999998653333444444444555568999999999998888999999999
Q ss_pred hhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 177 WKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 177 ~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
.+|+.+.+|+||+|+|+||+++|++++|+..+|++++++|||.+|+.+.++.++++.++|||.+++|..+
T Consensus 164 ~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~~~s~~~~~~~~~~~~~~gig~~~~~~~~ 233 (320)
T d1z7wa1 164 WKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVL 233 (320)
T ss_dssp HHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTC
T ss_pred HHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccccCCccccCCCCCCceeeeccCCcCcchh
Confidence 9999888999999999999999999999999999999999999999999999999999999999998753
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.7e-51 Score=356.68 Aligned_cols=227 Identities=46% Similarity=0.698 Sum_probs=209.1
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCC-eEEEEeccChHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK-SVLIETTGGNTGIGLAFIA 97 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~-~~vv~~ssGN~g~alA~~a 97 (251)
||...+|+|||+++++|++.+|++||+|+|++|||||||+|++.+++.+|.++|..++++ .+|+++|+||||.|+|++|
T Consensus 2 ri~~~ig~TPLi~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a 81 (302)
T d1ve1a1 2 RVEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIA 81 (302)
T ss_dssp CGGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHH
T ss_pred cccCccCCCCeEECcccchhhCCEEEEEeCCCCcccCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhh
Confidence 578899999999999999999999999999999999999999999999999999776543 4699999999999999999
Q ss_pred HHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHh
Q 025563 98 ALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIW 177 (251)
Q Consensus 98 ~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~ 177 (251)
+++|++|++|+|+.+++.+++.++.+|++++.+....+..+....+.+..++. +++|++||+|+.++.+||.|+++||+
T Consensus 82 ~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~EI~ 160 (302)
T d1ve1a1 82 ASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELY 160 (302)
T ss_dssp HHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHH-TCBCCCTTTCHHHHHHHHHTHHHHHH
T ss_pred hccCcceeEeeecccchheeehhhhhhhcchhcccccchHHHHHHhhhhhhcc-CccccccCccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988655556666666666665 89999999999999889999999999
Q ss_pred hhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 178 KDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 178 ~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
+|+++.||+||+|+|+||+++|++.+|++.+|+++|+||||++|+++..+.+.++.++|++.++.|...
T Consensus 161 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 229 (302)
T d1ve1a1 161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENL 229 (302)
T ss_dssp HHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTC
T ss_pred HHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEEecccceeeeccccCcccCccCCCcCCchh
Confidence 999878999999999999999999999999999999999999999999888999999999999988763
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.2e-51 Score=358.22 Aligned_cols=222 Identities=45% Similarity=0.648 Sum_probs=202.8
Q ss_pred HHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFI 96 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 96 (251)
|+++...+|+|||+++++| +.+||+|+|++|||||||+|++.+++..+.++|..+.+ |+++|+||||.|+|++
T Consensus 1 ~~~i~~~ig~TPL~~~~~l----~~~i~~K~E~~nptGSfK~Rga~~~i~~a~~~g~~~~~---vv~~SsGN~g~a~A~~ 73 (293)
T d1o58a_ 1 HHMMERLIGSTPIVRLDSI----DSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMI 73 (293)
T ss_dssp CCHHHHHSCCCCEEECTTT----CTTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTC---EEEECSSHHHHHHHHH
T ss_pred CchhhhhcCCCCcEECCCC----CCEEEEEECCCCCccChHHHHHHHHHHHHHHcCCCCcc---eEEecCcchhhHHHHh
Confidence 3578889999999999875 56899999999999999999999999999999876544 9999999999999999
Q ss_pred HHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHH
Q 025563 97 AALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEI 176 (251)
Q Consensus 97 a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI 176 (251)
|+.+|++|+||+|+++++.|+++++.+||+|+.++...+...+.+++.+++++. +++|+++|+|+.++..|+.+++.||
T Consensus 74 a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei 152 (293)
T d1o58a_ 74 GAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEI 152 (293)
T ss_dssp HHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHH
T ss_pred hhhccceeEeeccccccHHHeeccccCCcEEEEecCcchhhHHHHHHHHHHhcc-CCEEeeeccccceeeeccccHHHhh
Confidence 999999999999999999999999999999999987655556677777888876 7899999999998888999999999
Q ss_pred hhhhCCCCCEEEEecCchhHHHHHHHHHHhhCC-CcEEEEEeCCCCccccCCCCCceeecccCCccccccc
Q 025563 177 WKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNP-NIKVYGVEPTESAMLNGGQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 177 ~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~-~~~vigVep~~s~~~~~~~~~~~~i~g~g~~~~~~~~ 246 (251)
++|+.+.||+||+|+|+||+++|++.+|++..+ ++||++|||++|+++.++.++++.++|||.+++|.++
T Consensus 153 ~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~vep~~~~~l~~~~~~~~~i~~i~~~~~~~~~ 223 (293)
T d1o58a_ 153 LKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKIL 223 (293)
T ss_dssp HHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTC
T ss_pred hhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEecCCCccccCCCcCCcccccCCCCccchhh
Confidence 999988899999999999999999999998654 5999999999999999999999999999999998764
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=100.00 E-value=1.8e-49 Score=345.62 Aligned_cols=208 Identities=45% Similarity=0.736 Sum_probs=191.2
Q ss_pred HhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHH
Q 025563 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 19 ~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
.|.+.||+|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.++|...++.+ |+++|+||||.|+|++|+
T Consensus 2 ~i~~~IG~TPL~~~~~l~~~~g~~iy~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~-vv~aSsGN~g~a~A~~a~ 80 (292)
T d2bhsa1 2 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAA 80 (292)
T ss_dssp CGGGGSSCCCEEECSSSSCCSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTSE-EEEECCSHHHHHHHHHHH
T ss_pred chhcccCCCceEECCccChhhCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhCCcCCCce-eeeecccchhHHHHHHHH
Confidence 3677899999999999999999999999999999999999999999999999998777665 999999999999999999
Q ss_pred HCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhh
Q 025563 99 LRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWK 178 (251)
Q Consensus 99 ~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~ 178 (251)
++|++|+||||+++++.|+++++.+||+|+.++...++.++...+.+..++. +.+|.+||+|+.++.+||.++++||++
T Consensus 81 ~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~Ei~~ 159 (292)
T d2bhsa1 81 LKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQ 159 (292)
T ss_dssp HHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHT-SSEECCTTTCTHHHHHHHHTHHHHHHH
T ss_pred hcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccc-cccccCCCchhcchhhHHHHHHHHhHH
Confidence 9999999999999999999999999999999987655556666666666665 789999999999998899999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccCCC
Q 025563 179 DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNGGQ 228 (251)
Q Consensus 179 q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~~~ 228 (251)
|+++.+|+||+|+|+||+++|++.++++..++++|++|||++++++....
T Consensus 160 q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep~~~~~~~~~~ 209 (292)
T d2bhsa1 160 QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIR 209 (292)
T ss_dssp HTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTTCC
T ss_pred hcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEecccccccccccc
Confidence 99878999999999999999999999999999999999999999887543
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-49 Score=352.04 Aligned_cols=230 Identities=41% Similarity=0.604 Sum_probs=199.4
Q ss_pred HHHHHhhcccCCCcceecccccccCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHH
Q 025563 15 AIKKDATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIG 92 (251)
Q Consensus 15 ~~~~~v~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~a 92 (251)
.+++.|.+.||+|||+++++|++.+| ++||+|+|++|||||||+|++.+++.+|.++|+++++.. ||++|+||||.|
T Consensus 33 ~~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRga~~~i~~a~~~g~~~~~~~-vv~aSsGN~g~a 111 (355)
T d1jbqa_ 33 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDT-IIEPTSGNTGIG 111 (355)
T ss_dssp SEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCE-EEEECSSHHHHH
T ss_pred cccccHHHhcCCCCcEECcchhHHhCCCCEEEEEECCCCCccCHHHHHHHHHHHHHHHcCCcccCce-EEEecccchhhH
Confidence 34567888999999999999999887 489999999999999999999999999999998777665 999999999999
Q ss_pred HHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChH---HHHHHHHHHhhcCCCeEecCCCCCCchHHHHH
Q 025563 93 LAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFE---GILRKGEEILSNTPNGFMFRQFENPANPKIHY 169 (251)
Q Consensus 93 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 169 (251)
+|++|+++|++|+||||..+++.|+++|+.+||+|+.++...... +......+..++.+..+|.+++.++.+..+||
T Consensus 112 ~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~ 191 (355)
T d1jbqa_ 112 LALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHY 191 (355)
T ss_dssp HHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHH
T ss_pred HHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhccccccccccCcccchhhhc
Confidence 999999999999999999999999999999999999997643222 23333444444445788889999998888899
Q ss_pred hhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC-----CCCCceeecccCCccccc
Q 025563 170 ETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG-----GQPGRLLFFLFFLFFFCF 244 (251)
Q Consensus 170 ~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~-----~~~~~~~i~g~g~~~~~~ 244 (251)
.|+++||++|++++||+||+|+|+||+++|++.+|++.++++||++|||++|+.+.. ....++.++|++.++.+.
T Consensus 192 ~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~ 271 (355)
T d1jbqa_ 192 DTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 271 (355)
T ss_dssp HTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCT
T ss_pred ccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecccCCcccccccccccccccccccccccccchh
Confidence 999999999998889999999999999999999999999999999999999976543 345577899999988876
Q ss_pred c
Q 025563 245 F 245 (251)
Q Consensus 245 ~ 245 (251)
+
T Consensus 272 ~ 272 (355)
T d1jbqa_ 272 V 272 (355)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=2.5e-49 Score=348.15 Aligned_cols=209 Identities=22% Similarity=0.299 Sum_probs=193.5
Q ss_pred ccchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q 025563 7 MEDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTG 86 (251)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ss 86 (251)
++++++|..++++|...+++|||+++++|++.+|.+||+|+|++||+||||||++.+++.++.+.+. ...|+++|+
T Consensus 2 lpt~~di~~a~~ri~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~~~~~~~~~~----~~~vv~~ss 77 (318)
T d1v71a1 2 LPTYDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR----KAGVLTFSS 77 (318)
T ss_dssp CCCHHHHHHHHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHH----HHCEEECCS
T ss_pred CCCHHHHHHHHHHHhccCCCCCEEEchhhhHHHCCEEEEEeCCCCCCCCHHHHHHHHHHHHhhhccc----cceeeeecc
Confidence 4678999999999999999999999999999999999999999999999999999999988755443 223999999
Q ss_pred ChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHH
Q 025563 87 GNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPK 166 (251)
Q Consensus 87 GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 166 (251)
||||.++|++|+++|++|+||+|.++++.++++++.+||+|+.+++ +++++...+++++++. +++|+++|+|+.+++
T Consensus 78 GN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~~ 154 (318)
T d1v71a1 78 GNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--YKDDREKMAKEISERE-GLTIIPPYDHPHVLA 154 (318)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--TTTCHHHHHHHHHHHH-TCBCCCSSSSHHHHH
T ss_pred chhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccC--CchHHHHHHHHHHHhc-CCEecCCcccccccc
Confidence 9999999999999999999999999999999999999999999987 4677888888998886 899999999999885
Q ss_pred HHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 167 IHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 167 ~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
||.++++||.+|+ +.+|+||+|+|+||+++|++.+++..+|+++|++|+|++++++
T Consensus 155 -g~~t~~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~~~~~~~~ 210 (318)
T d1v71a1 155 -GQGTAAKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDG 210 (318)
T ss_dssp -HHTHHHHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHH
T ss_pred -ccchHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeecccccchhhh
Confidence 9999999999999 5799999999999999999999999999999999999998764
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=7.9e-48 Score=338.01 Aligned_cols=228 Identities=43% Similarity=0.666 Sum_probs=197.4
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
++++++..||+|||+++++++. +.+||+|+|++|||||||+|+|.+++.+|.+.|.+.++.+ ||++|+||||.|+|+
T Consensus 2 ~y~~~~~~ig~TPLv~~~~l~~--~~~I~lK~E~~nptGSfK~RgA~~~i~~a~~~g~~~~~~~-vv~~SsGN~g~a~A~ 78 (310)
T d1y7la1 2 IYADNSYSIGNTPLVRLKHFGH--NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKE-IVDATSGNTGIALAY 78 (310)
T ss_dssp CCSSGGGGCCCCCEEECSSSSS--TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCE-EEESCCSHHHHHHHH
T ss_pred ccchhhhhcCCCCeEECCCCCC--CCEEEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCCCce-eeeecCCCchHHHHH
Confidence 4667889999999999998875 6799999999999999999999999999999998777765 999999999999999
Q ss_pred HHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHH-HHHhhcCCCeEecCCCCCCchHHHHHhhHHH
Q 025563 96 IAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKG-EEILSNTPNGFMFRQFENPANPKIHYETTGP 174 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 174 (251)
+|+++|++|+||||++++..|+++++.+||+|+.+++..+..+..... ....+...+.+|+++++|+.++..|+.+++.
T Consensus 79 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 158 (310)
T d1y7la1 79 VAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGP 158 (310)
T ss_dssp HHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHH
T ss_pred HHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHH
Confidence 999999999999999999999999999999999998753222232222 2233334478899999999999889999999
Q ss_pred HHhhhhCCCCCEEEEecCchhHHHHHHHHHHh-hCCCcEEEEEeCCCCccccC------CCCCceeecccCCccccccc
Q 025563 175 EIWKDSGGDVDILVAGIGTGGTVTGSGRFLKE-KNPNIKVYGVEPTESAMLNG------GQPGRLLFFLFFLFFFCFFF 246 (251)
Q Consensus 175 EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~-~~~~~~vigVep~~s~~~~~------~~~~~~~i~g~g~~~~~~~~ 246 (251)
||++|+++.||+||+|+|+||+++|++.+++. ..+++++++|||.+++.+.. ....++.+.|||.+++|..+
T Consensus 159 Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i~ve~~~~~~~~~~~~~~~~~~~~~~~~gig~~~~~~~~ 237 (310)
T d1y7la1 159 EIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNL 237 (310)
T ss_dssp HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTC
T ss_pred HHHHhcCCCCCEEEecCcCCcchhHHHHHHHHhhcccceeccccccCchhhhhhhcCCccccCCceeeecccccccHHH
Confidence 99999988899999999999999999999985 67999999999999976542 23567889999999887764
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-47 Score=333.62 Aligned_cols=207 Identities=25% Similarity=0.273 Sum_probs=187.8
Q ss_pred cchhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccC
Q 025563 8 EDNHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGG 87 (251)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssG 87 (251)
+++++|..++++|...+++|||+++++|++.+|.+||+|+|++|||||||||+|.+++.++... . .|+++|+|
T Consensus 1 p~~~~i~~a~~~i~~~ig~TPL~~~~~L~~~~g~~i~~K~E~~nPtGSfKdRgA~~~~~~~~~~------~-~vv~aSsG 73 (310)
T d1ve5a1 1 PSLQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENP------K-GLLAVSSG 73 (310)
T ss_dssp CCHHHHHHHHHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSSSC------C-CEEEECSS
T ss_pred CCHHHHHHHHHHHhCcCCCCceeEhhhhhHHhCCEEEEEeCCCCCcCCcHHHHHHHHHHHhccc------C-CccccCch
Confidence 4688999999999999999999999999999999999999999999999999998877653211 2 39999999
Q ss_pred hHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHH
Q 025563 88 NTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKI 167 (251)
Q Consensus 88 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 167 (251)
|||.|+|++|+++|++|+||||+++++.++++++.+||+++.+++ +++++.+.+++.+++. +++|++||+||.+++
T Consensus 74 N~g~a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~~~- 149 (310)
T d1ve5a1 74 NHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TAKNREEVARALQEET-GYALIHPFDDPLVIA- 149 (310)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CTTTHHHHHHHHHHHH-CCEECCSSSSHHHHH-
T ss_pred hhHHHHHHHHHHcCCeEEEeecccchHHHHHHHhhhccccceeec--cchhHHHHHHHHHHhc-CCcCCCCCCChhhHh-
Confidence 999999999999999999999999999999999999999999987 4678888888888886 899999999999996
Q ss_pred HHhhHHHHHhhhhC---CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 168 HYETTGPEIWKDSG---GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 168 g~~t~~~EI~~q~~---~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
|+.+++.||.+|+. ..||++|+|+|+||+++|+..++++.++.+++++|||.+++++.
T Consensus 150 g~~t~~~Ei~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~ii~ve~~~~~~~~ 210 (310)
T d1ve5a1 150 GQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAK 210 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHH
T ss_pred hhhhhHHHHHHHHHhcCCceeeeeeccCcchhhhhhhhhhhccCCccceEEEEeeccchhh
Confidence 99999999999973 46999999999999999999999999999999999999998764
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.8e-46 Score=326.40 Aligned_cols=210 Identities=17% Similarity=0.162 Sum_probs=189.4
Q ss_pred cCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCc
Q 025563 24 IGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYK 103 (251)
Q Consensus 24 ~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~ 103 (251)
+-+|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|. . +||++|+||||+|+|++|+++|++
T Consensus 5 ~~~TPl~~~~~L~~~~g~~i~~K~E~~nptGSfK~R~a~~~~~~a~~~g~----~-~vv~aSsGN~g~a~A~~a~~~G~~ 79 (319)
T d1p5ja_ 5 HVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC----A-HFVCSSAGNAGMAAAYAARQLGVP 79 (319)
T ss_dssp SCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTC----C-EEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ceeCCcEEhHHhHHHHCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHcCC----C-EEEEeCCCcHHHHHHHHhhhcccc
Confidence 45799999999999999999999999999999999999999999999885 3 499999999999999999999999
Q ss_pred EEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhCCC
Q 025563 104 LIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSGGD 183 (251)
Q Consensus 104 ~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~~~ 183 (251)
|+||||+++++.|++.++.+|++|+.+++ +++++.+.++++++++++.+|+++++|+.+++ ||.+++.||.+|+.+.
T Consensus 80 ~~i~~p~~~~~~k~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-g~~~~~~Ei~~q~~~~ 156 (319)
T d1p5ja_ 80 ATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPLIWE-GHASIVKELKETLWEK 156 (319)
T ss_dssp EEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHHHHHHHSTTEEECCSSCCHHHHH-HHTHHHHHHHHHCSSC
T ss_pred ceeccccccccccccccccceeccccccc--cchhHHHHHHHHhhccCccccccccccccccc-ccchhhhhhhccccCC
Confidence 99999999999999999999999999987 58999999999998877889999999999985 9999999999999888
Q ss_pred CCEEEEecCchhHHHHHHHHHHhhC-CCcEEEEEeCCCCccccC----C-----CCCceeecccCCcc
Q 025563 184 VDILVAGIGTGGTVTGSGRFLKEKN-PNIKVYGVEPTESAMLNG----G-----QPGRLLFFLFFLFF 241 (251)
Q Consensus 184 ~d~vv~~vGtGg~~~Gi~~~~~~~~-~~~~vigVep~~s~~~~~----~-----~~~~~~i~g~g~~~ 241 (251)
||++|+|+|+||+++|++.+|++.. +++++++|||++|+++.. + ........|||...
T Consensus 157 ~d~vv~~vg~Gg~~~g~~~~~~~~~~~~~~~i~ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~ 224 (319)
T d1p5ja_ 157 PGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKT 224 (319)
T ss_dssp CSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSS
T ss_pred CceeeecccCCcchhhhHHHHHHhccCCeeeeecccccccccchhhhccccccccccccccccccccc
Confidence 9999999999999999999999865 789999999999987552 2 22344455777643
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-46 Score=330.55 Aligned_cols=211 Identities=25% Similarity=0.306 Sum_probs=189.0
Q ss_pred cccchhhHHH-HH-HHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 025563 6 SMEDNHHKRA-IK-KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIE 83 (251)
Q Consensus 6 ~~~~~~~~~~-~~-~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~ 83 (251)
+.+++.|... +. .+|.+.+++|||+++++|++.+|++||+|+|++||+||||+|++.+++..+.+++. ..+|++
T Consensus 5 ~~p~~~d~~~~i~~~~v~~~~~~TPL~~~~~L~~~lg~~i~~K~E~~nptGS~KdRga~~~i~~~~~~~~----~~~vv~ 80 (331)
T d1tdja1 5 GAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK----AHGVIT 80 (331)
T ss_dssp SCCCHHHHHHHHHHCCGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC----SSSCEE
T ss_pred CCCChHHHHHHHHhcccceeccCCceeEHHHhhHHHCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhCC----CCeeee
Confidence 3444444322 33 26889999999999999999999999999999999999999999999998766653 223999
Q ss_pred eccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCc
Q 025563 84 TTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPA 163 (251)
Q Consensus 84 ~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~ 163 (251)
+|+||||.|+|++|+.+|++|++|||..++..|++.++.+||+|+.++. +++++.+.+.+++++. +++|+++++|+.
T Consensus 81 assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 157 (331)
T d1tdja1 81 ASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFDEAKAKAIELSQQQ-GFTWVPPFDHPM 157 (331)
T ss_dssp EECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHHHHHHHHHHHHHHH-CCEECCSSCCHH
T ss_pred cccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCc--ccccchhhhhhhhhcC-CCccccccCChH
Confidence 9999999999999999999999999999999999999999999999987 5778888888888776 899999999999
Q ss_pred hHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 025563 164 NPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 164 ~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~ 225 (251)
+++ ||.+++.||.+|. ++||+||+|+|+||+++|++.+|++.+|++||++|||++|+++.
T Consensus 158 ~~~-g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~~~~~~~~ 217 (331)
T d1tdja1 158 VIA-GQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLK 217 (331)
T ss_dssp HHH-HHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHH
T ss_pred Hhh-hhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecccccchHH
Confidence 985 9999999999998 57999999999999999999999999999999999999998764
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=1e-45 Score=331.82 Aligned_cols=198 Identities=27% Similarity=0.361 Sum_probs=176.3
Q ss_pred cCCCcceecccccccCCceEEEEeCCCCCCC-chhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCC
Q 025563 24 IGNTPMVYLNNVVDGCVARIAAKLEMMEPCC-SVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGY 102 (251)
Q Consensus 24 ~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptG-S~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~ 102 (251)
..||||+++ ++....|++||+|+|++||+| |||||++.+++.+|.++ +.++.+ ||++|+||||.|+|++|+++|+
T Consensus 93 ~~PTPLvrl-~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~--~~~g~~-VVeaSSGN~GiAlA~~aa~lGi 168 (382)
T d1wkva1 93 GKPTPLVRS-RLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKGSL-VADATSSNFGVALSAVARLYGY 168 (382)
T ss_dssp SCSCCEEEC-CCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTT--SCTTCE-EEEECCHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEC-CCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhc--cCCCCE-EEEeCCcHHHHHHHHHHHHcCC
Confidence 577999997 466667999999999999986 99999999999988543 445555 9999999999999999999999
Q ss_pred cEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecCCCCCCchHHHHHhhHHHHHhhhhC-
Q 025563 103 KLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFRQFENPANPKIHYETTGPEIWKDSG- 181 (251)
Q Consensus 103 ~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~EI~~q~~- 181 (251)
+|+||||+++++.|+++++.+||+|+.++...+..++.+++.+.+++. +++|++|++|+.++.+||.+++.||++|+.
T Consensus 169 k~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~-~~~~~~q~~N~~~~~~h~~ttg~EI~eQl~~ 247 (382)
T d1wkva1 169 RARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSRR 247 (382)
T ss_dssp EEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHHH
T ss_pred CEEEEeeccccccccccccccCcceeecCcchhhHHHHHHHhhhcccc-CccccccccccceeeehhhcchHHHHHHhhc
Confidence 999999999999999999999999999987655556666676777765 789999999999998899999999999984
Q ss_pred --CCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccccC
Q 025563 182 --GDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAMLNG 226 (251)
Q Consensus 182 --~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~~~ 226 (251)
..+|+||+++|+||+++|++.++++.+|++||++|||++++.+.+
T Consensus 248 ~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g 294 (382)
T d1wkva1 248 GGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG 294 (382)
T ss_dssp TTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTT
T ss_pred CCCceeEEEEecccccccccceeehhhhCCccceeEecccccccccc
Confidence 368999999999999999999999999999999999999987753
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.8e-44 Score=314.93 Aligned_cols=225 Identities=43% Similarity=0.664 Sum_probs=190.4
Q ss_pred HHHHhhcccCCCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHH
Q 025563 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAF 95 (251)
Q Consensus 16 ~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 95 (251)
+++++++.+|+|||++++++ .+.+||+|+|++|||||||+|++.+++.++++.|++.++.+ ++++|+||||.|+|+
T Consensus 3 ~~~~i~~~ig~TPLi~L~~l---~~~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~-vv~assGn~g~a~A~ 78 (302)
T d1fcja_ 3 IYEDNSLTIGHTPLVRLNRI---GNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTNGNTGIALAY 78 (302)
T ss_dssp EESSGGGGCCCCCEEECSSS---SSSCEEEEETTSSGGGBTHHHHHHHHHHHHHHHTCCCTTCE-EEEECSSHHHHHHHH
T ss_pred hHhHHHHhhCCCCcEECCcc---CCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCce-EEEeccccchhHHHH
Confidence 35678889999999998765 46799999999999999999999999999999998887766 999999999999999
Q ss_pred HHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHH---HhhcCCCeEecCCCCCCchHHHHHhhH
Q 025563 96 IAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEE---ILSNTPNGFMFRQFENPANPKIHYETT 172 (251)
Q Consensus 96 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~n~~~~~~g~~t~ 172 (251)
+|+.+|++|++|||.++++.++.+++.+|++|+.+++. +.+....++. ..++..+.++.++++++.++..|+.++
T Consensus 79 ~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti 156 (302)
T d1fcja_ 79 VAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA--KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTT 156 (302)
T ss_dssp HHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG--GHHHHHHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHHTH
T ss_pred HHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccc--cccchhhhHHHHHHhhhccceeccccccccchhHHHHhHH
Confidence 99999999999999999999999999999999999875 3333333222 233333678888999998888899999
Q ss_pred HHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCc--EEEEEeCCCCcccc------CCCCCceeecccCCccccc
Q 025563 173 GPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNI--KVYGVEPTESAMLN------GGQPGRLLFFLFFLFFFCF 244 (251)
Q Consensus 173 ~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~--~vigVep~~s~~~~------~~~~~~~~i~g~g~~~~~~ 244 (251)
+.||++|+++.||+||+|+|+||+++|++.++++..+++ .+++++|..++.+. .....++.++|||.+.+|.
T Consensus 157 ~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~gig~~~~~~ 236 (302)
T d1fcja_ 157 GPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236 (302)
T ss_dssp HHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEEEEEETTSCHHHHHHTTCCCCCCCCSCTTSCCSSCCT
T ss_pred HHHHHHhcCCCCCEEEEcCCCccccccceeeeeeccccccccccccccccchhhhccccccccccCCceecccCCCcCch
Confidence 999999998789999999999999999999999987764 56677777776433 1345577899999988776
Q ss_pred cc
Q 025563 245 FF 246 (251)
Q Consensus 245 ~~ 246 (251)
.+
T Consensus 237 ~l 238 (302)
T d1fcja_ 237 NL 238 (302)
T ss_dssp TC
T ss_pred hh
Confidence 53
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.9e-39 Score=286.79 Aligned_cols=214 Identities=21% Similarity=0.211 Sum_probs=183.9
Q ss_pred cccccchhhHHHH---HHHhhcccCCCcceeccc--ccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Q 025563 4 EASMEDNHHKRAI---KKDATQLIGNTPMVYLNN--VVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK 78 (251)
Q Consensus 4 ~~~~~~~~~~~~~---~~~v~~~~~~TPl~~~~~--l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~ 78 (251)
++.+|++.+.+++ .+.|+..+|+|||+++++ ++..+|++||+|+|++||+||||+|++.+++.++.+.|. +
T Consensus 3 ~~~~~~~~~~lp~~~~~~~i~~~~gnTPLv~l~~~~l~~~~g~~i~~K~E~~nptGSfK~R~a~~~i~~a~~~g~----~ 78 (351)
T d1v7ca_ 3 PPLIERYRNLLPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA----Q 78 (351)
T ss_dssp CCHHHHTGGGSSCCTTSCCCCSCCCCCCEEECCCCHHHHTTTEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----S
T ss_pred cchHHHHHHHCCCCCCCCccccCCCCCCCeECCCcchhhccCCEEEEEEcCCCCccChHHHHHHHHHHHHHhcCC----C
Confidence 3456666666543 345888899999999986 466788999999999999999999999999999988874 3
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecC
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFR 157 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~ 157 (251)
.++++|+||||.++|++|+++|++|+|+||.+. +..++.+++.+||+|+.+++ +++++.+.+++++++. ++++.
T Consensus 79 -~iv~~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~~~~a~~l~~~~-~~~~~- 153 (351)
T d1v7ca_ 79 -AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRLTQKLTEAF-PVALV- 153 (351)
T ss_dssp -EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-SCEEC-
T ss_pred -eeeeeccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEeecc--ccchhhhhHHHHhhhh-ccccc-
Confidence 499999999999999999999999999999875 56788889999999999987 5889999999999986 66655
Q ss_pred CCCCCchHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhh------CCCcEEEEEeCCCCccccCC
Q 025563 158 QFENPANPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEK------NPNIKVYGVEPTESAMLNGG 227 (251)
Q Consensus 158 ~~~n~~~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~------~~~~~vigVep~~s~~~~~~ 227 (251)
+++|+.++ .||.+++.||.+|+...+|++++++|+||+.+|++.+++.. .+.+++++|++.++.++...
T Consensus 154 ~~~~~~~~-~g~~t~~~Ei~eQl~~~~d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (351)
T d1v7ca_ 154 NSVNPHRL-EGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLG 228 (351)
T ss_dssp STTSHHHH-HHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHT
T ss_pred cccCchhh-hhhhhHHHHHHHHHhhhccceeeeecccCCcchhHHHHHHHhhcccccCCcceeeeeccccchhhhc
Confidence 44577777 49999999999999888999999999999999999988764 46799999999999876543
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.6e-39 Score=297.09 Aligned_cols=216 Identities=15% Similarity=0.087 Sum_probs=187.4
Q ss_pred ccccchhh-HHHH---HHHhhcccCCCcceeccccccc-CCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Q 025563 5 ASMEDNHH-KRAI---KKDATQLIGNTPMVYLNNVVDG-CVA-RIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGK 78 (251)
Q Consensus 5 ~~~~~~~~-~~~~---~~~v~~~~~~TPl~~~~~l~~~-~g~-~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~ 78 (251)
+.||++.+ ++++ .+.|+..+|+|||+++++|+++ +|. +||+|+|++|||||||||++.+++..+.+.+....+.
T Consensus 96 ~g~wr~~~~~lp~~~~~~~v~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~~~~~~~~~ 175 (477)
T d1e5xa_ 96 SGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPV 175 (477)
T ss_dssp STTGGGGGGTCTTCCGGGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCceeehhhcCCCCCCCCccccCCCCCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHHhccccCCc
Confidence 35777766 4554 4468999999999999999876 564 8999999999999999999999999887765544455
Q ss_pred eEEEEeccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCCCeEecC
Q 025563 79 SVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTPNGFMFR 157 (251)
Q Consensus 79 ~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~ 157 (251)
.+|+++|+||||.|+|++|+++|++|+||+|.+ .+..|+.+++.+||+|+.+++ +++++.+.+++++++. + +|..
T Consensus 176 ~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g--~~dda~~~~~e~a~~~-~-~~~~ 251 (477)
T d1e5xa_ 176 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMKLIREITAEL-P-IYLA 251 (477)
T ss_dssp CEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-C-EEEG
T ss_pred ceEEeecCchHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCcccccccc--CchhhHHHhhhhcccc-c-eecc
Confidence 569999999999999999999999999999975 678899999999999999987 6899999999998876 4 5566
Q ss_pred CCCCCchHHHHHhhHHHHHhhhhCC-CCCEEEEecCchhHHHHHHHHHHhh------CCCcEEEEEeCCCCcccc
Q 025563 158 QFENPANPKIHYETTGPEIWKDSGG-DVDILVAGIGTGGTVTGSGRFLKEK------NPNIKVYGVEPTESAMLN 225 (251)
Q Consensus 158 ~~~n~~~~~~g~~t~~~EI~~q~~~-~~d~vv~~vGtGg~~~Gi~~~~~~~------~~~~~vigVep~~s~~~~ 225 (251)
++.|+.+++ |+.+++.||.+|+.. .||++++|+|+|++++|++.+++.. ...+++++|++++++++.
T Consensus 252 ~~~N~~~~~-g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~~~~~~ 325 (477)
T d1e5xa_ 252 NSLNSLRLE-GQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLY 325 (477)
T ss_dssp GGSHHHHHH-HHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHH
T ss_pred cccccccch-hhhHHHHHHHHhhccccceeeeecccCCcchhhHHHHHHHHhhcCccccCceEEEEeccchhhHH
Confidence 778999986 999999999999964 5999999999999999999999875 245899999999998754
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.5e-38 Score=283.30 Aligned_cols=219 Identities=21% Similarity=0.206 Sum_probs=175.1
Q ss_pred CccccccchhhHHHHHHHhh--------------cccC-CCcceecccccccC-CceEEEEeCCCCCCCchhhHHHHHHH
Q 025563 2 VLEASMEDNHHKRAIKKDAT--------------QLIG-NTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIALSMI 65 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~--------------~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~l 65 (251)
++|..|+.++++..+++++. .+++ ||||+++++|++.+ |++||+|+|++|||||||+|++.+++
T Consensus 11 ~pe~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS~KdR~a~~~i 90 (386)
T d1v8za1 11 VPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQA 90 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCcceEhHhhHHhcCCCeEEEEeccCCCCCCccchHHHHHH
Confidence 45666777777776666543 3465 69999999999877 57999999999999999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCC---CcHHHHHHHHHcCCEEEEeCCC-CChHHHHH
Q 025563 66 KDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSI---ASMERRIVLRALGAEVYLADQA-GGFEGILR 141 (251)
Q Consensus 66 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~ 141 (251)
..|.+.|+ ...++++|+||||.++|++|+++|++|+||||.. ....|+.+++.+||+|+.++.. .++.++..
T Consensus 91 ~~a~~~G~----~~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~ 166 (386)
T d1v8za1 91 LLAKFMGK----TRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAIN 166 (386)
T ss_dssp HHHHHTTC----CEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHH
T ss_pred HHHhhcCC----ceeEeecccchHHHHHHHHHHHcCCcccccccchhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHHH
Confidence 99999986 3458889999999999999999999999999854 4467999999999999999753 35666666
Q ss_pred HHHHH-hhcCCCeEe-----cCCCCCCchHHHHHhhHHHHHhhhh----CCCCCEEEEecCchhHHHHHHHHHHhhCCCc
Q 025563 142 KGEEI-LSNTPNGFM-----FRQFENPANPKIHYETTGPEIWKDS----GGDVDILVAGIGTGGTVTGSGRFLKEKNPNI 211 (251)
Q Consensus 142 ~a~~~-~~~~~~~~~-----~~~~~n~~~~~~g~~t~~~EI~~q~----~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~ 211 (251)
.+.+. ........+ .++++++.++..+|.+++.||.+|+ ...||+||+|+|+|++++|+..++++ .+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~-~~~v 245 (386)
T d1v8za1 167 EALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-DKKV 245 (386)
T ss_dssp HHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTS
T ss_pred HHHHHHHhhhhhhhhccccccCccccchhhhccchhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhh-ccCc
Confidence 55443 332222222 3455666667678999999998886 34699999999999999999887665 7889
Q ss_pred EEEEEeCCCCcccc
Q 025563 212 KVYGVEPTESAMLN 225 (251)
Q Consensus 212 ~vigVep~~s~~~~ 225 (251)
++++|||.++....
T Consensus 246 ~iigvep~g~~~~~ 259 (386)
T d1v8za1 246 KLVGVEAGGKGLES 259 (386)
T ss_dssp EEEEEEEEETBGGG
T ss_pred eEEEEecCcccccc
Confidence 99999999876543
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.1e-37 Score=277.20 Aligned_cols=217 Identities=19% Similarity=0.207 Sum_probs=170.9
Q ss_pred CccccccchhhHHHHHHHh--------------hcccCC-CcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHH
Q 025563 2 VLEASMEDNHHKRAIKKDA--------------TQLIGN-TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK 66 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v--------------~~~~~~-TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~ 66 (251)
++|..|+.+++....++++ ..++|+ |||+++++|++.+|++||+|+|++|||||||+|++...+.
T Consensus 16 ~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~lg~~IylK~E~lnptGS~K~R~a~~~i~ 95 (390)
T d1qopb_ 16 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQAL 95 (390)
T ss_dssp SCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCchhhEhHhhhhhhCCEEEEEEecCCcccccchhHHHHHHH
Confidence 4666777677766555543 345655 9999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc---HHHHHHHHHcCCEEEEeCCC-CChHHHHHH
Q 025563 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS---MERRIVLRALGAEVYLADQA-GGFEGILRK 142 (251)
Q Consensus 67 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~---~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~ 142 (251)
.|.+.|+ +..++++|+||||.++|++|+++|++|+||||...+ ..++.+|+.|||+|+.++.. .+++++...
T Consensus 96 ~A~~~G~----~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~~~ 171 (390)
T d1qopb_ 96 LAKRMGK----SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNE 171 (390)
T ss_dssp HHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHH
T ss_pred HHhhcCC----ceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEEecCCchhhhHhHHH
Confidence 9999986 445789999999999999999999999999998654 67799999999999999643 345555554
Q ss_pred H-HHHhhcCCCeEecCCCC-CC----chHHHHHhhHHHHHhhhh----CCCCCEEEEecCchhHHHHHHHHHHhhCCCcE
Q 025563 143 G-EEILSNTPNGFMFRQFE-NP----ANPKIHYETTGPEIWKDS----GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIK 212 (251)
Q Consensus 143 a-~~~~~~~~~~~~~~~~~-n~----~~~~~g~~t~~~EI~~q~----~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~ 212 (251)
+ +...+.....+|+.... ++ .....++.+++.|+.+|+ ...||+||+|+|+|++++|++.+|++ .+.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~-~~~~~ 250 (390)
T d1qopb_ 172 ALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIN-DTSVG 250 (390)
T ss_dssp HHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSE
T ss_pred HHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHHHHcCCccceEEecccccchhhheeccccc-cccee
Confidence 4 44444443444443321 11 222248899999998775 35699999999999999999999976 55699
Q ss_pred EEEEeCCCCcc
Q 025563 213 VYGVEPTESAM 223 (251)
Q Consensus 213 vigVep~~s~~ 223 (251)
+++++|.+...
T Consensus 251 ~ig~ep~~~g~ 261 (390)
T d1qopb_ 251 LIGVEPGGHGI 261 (390)
T ss_dssp EEEEEEEETBG
T ss_pred Eeccccccccc
Confidence 99999987543
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.2e-33 Score=246.69 Aligned_cols=212 Identities=19% Similarity=0.156 Sum_probs=165.3
Q ss_pred hhhHHHHHHHhhcccCCCcceecccccccCCceEEEEeCCCC--CCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccC
Q 025563 10 NHHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMME--PCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGG 87 (251)
Q Consensus 10 ~~~~~~~~~~v~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~--ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssG 87 (251)
++.+.+..++++...++|||+++++|++.+|++||+|+|++| |+||||+|++.+++.+++++|.. ...++++|+|
T Consensus 5 ~~~~l~~~p~i~l~~~~TPL~~~~~L~~~~G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~~---~~~~~~~s~g 81 (325)
T d1j0aa_ 5 IFALLAKFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGAD---VVITVGAVHS 81 (325)
T ss_dssp HHHHHTTCCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCS---EEEEECCTTC
T ss_pred HHHHHHhCCcccCCCCCCceeEHHHhHHHHCCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCCC---eeEEEeeCcc
Confidence 455556667899999999999999999999999999999988 99999999999999999988852 2234567889
Q ss_pred hHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH---cCCEEEEeCCCCChHH-HHHHHHHHhhcCCCeEecCCCCCCc
Q 025563 88 NTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA---LGAEVYLADQAGGFEG-ILRKGEEILSNTPNGFMFRQFENPA 163 (251)
Q Consensus 88 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~---~Ga~v~~v~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~n~~ 163 (251)
|||.|+|++|+.+|++|++|+|...+..+...+.. +|++++..+....... ..+.+.+...+....+++.+..+..
T Consensus 82 N~g~a~A~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (325)
T d1j0aa_ 82 NHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASP 161 (325)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSH
T ss_pred hHHHHHHHHHhhhcCceEEEeecccccchhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhccCceeeecCCCcc
Confidence 99999999999999999999998876555444443 3445554444322112 2222333333444555555544444
Q ss_pred hHHHHHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 164 NPKIHYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 164 ~~~~g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
....++.+++.|+.+|.+..+|+||+|+|+|++++|+..+++...+++++++|++......
T Consensus 162 ~~~~~~~~~~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~~v~~~~~~~~ 222 (325)
T d1j0aa_ 162 IGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEV 222 (325)
T ss_dssp HHHTHHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSS
T ss_pred ccccccchhhcccccccccccceeecccccchhhhhHHHHHHhhCccccccccccccchhh
Confidence 4446899999999999988899999999999999999999999999999999999987653
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Probab=99.97 E-value=3.5e-31 Score=229.62 Aligned_cols=204 Identities=19% Similarity=0.091 Sum_probs=156.1
Q ss_pred HHHhhcccCCCcceecccccccCC--ceEEEEeCCCCCCCch---hhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSV---KDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGI 91 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~---K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~ 91 (251)
++|+++.+++|||+++++|++.+| ++||+|+|++||+||| |+|++.+++.+++++|.. ...++++|+||||.
T Consensus 6 ~~r~~l~~g~TPL~~~~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~g~~---~v~~~~~s~gN~g~ 82 (338)
T d1tyza_ 6 FPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD---TLVSIGGIQSNQTR 82 (338)
T ss_dssp SCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHTTCC---EEEEEEETTCHHHH
T ss_pred CCccccCCCCCceeEhHHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHCCCC---eEEEEccCCchHHH
Confidence 456889999999999999999887 5899999999999999 999999999999998851 22345678899999
Q ss_pred HHHHHHHHCCCcEEEEecCCCc--------HHHHHHHHHcCCEEEEeCCCCChH---HHHHHHHHHhhcCCCeEecCCCC
Q 025563 92 GLAFIAALRGYKLIIVMPSIAS--------MERRIVLRALGAEVYLADQAGGFE---GILRKGEEILSNTPNGFMFRQFE 160 (251)
Q Consensus 92 alA~~a~~~G~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~v~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~ 160 (251)
|+|++|+.+|++|+||+|...+ ..+.+.++.+|+.++.++...+.. ...+.+....+...+.++..++.
T Consensus 83 A~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (338)
T d1tyza_ 83 QVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGC 162 (338)
T ss_dssp HHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTTCCEEEECGGG
T ss_pred HHHHHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcccceeeecccC
Confidence 9999999999999999998654 345677889999999998642211 12222333334444566655544
Q ss_pred CCchHHHHHhhHHHHHhh-----hhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 025563 161 NPANPKIHYETTGPEIWK-----DSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAML 224 (251)
Q Consensus 161 n~~~~~~g~~t~~~EI~~-----q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~~ 224 (251)
++... .+....+.|... +....||+||+|+|+|++++|+..+|+..+..++++++++..++..
T Consensus 163 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (338)
T d1tyza_ 163 SDHPL-GGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQ 230 (338)
T ss_dssp TSSTT-TTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGGGEEEEECSSCHHH
T ss_pred ccCcc-ccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHHhhhhcccceeeccchhh
Confidence 44333 244444544433 3446799999999999999999999999999999999999987653
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Probab=99.97 E-value=4.4e-30 Score=223.42 Aligned_cols=203 Identities=17% Similarity=0.135 Sum_probs=160.3
Q ss_pred HHHhhcccCCCcceecccccccCCc--eEEEEeCCCCCCCch---hhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHH
Q 025563 17 KKDATQLIGNTPMVYLNNVVDGCVA--RIAAKLEMMEPCCSV---KDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGI 91 (251)
Q Consensus 17 ~~~v~~~~~~TPl~~~~~l~~~~g~--~i~~K~E~~~ptGS~---K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~ 91 (251)
++++.+.+++|||+++++|++.+|. +||+|+|++||+||| |+|++.+++.+++++|.. ...++++|+||||.
T Consensus 6 ~~~~~l~~~~TPl~~~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~g~~---~i~~~~as~gN~g~ 82 (341)
T d1f2da_ 6 FAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT---HLVSIGGRQSNQTR 82 (341)
T ss_dssp SCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCS---EEEEEEETTCHHHH
T ss_pred ccCccCCCCCCceeEHHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHCCCC---EEEEEccCcchHHH
Confidence 3567888999999999999999874 899999999999999 999999999999998852 22246788899999
Q ss_pred HHHHHHHHCCCcEEEEecCCCcH-----------HHHHHHHHcCCEEEEeCCCCCh---HHHHHHHHHHhhcCCCeEecC
Q 025563 92 GLAFIAALRGYKLIIVMPSIASM-----------ERRIVLRALGAEVYLADQAGGF---EGILRKGEEILSNTPNGFMFR 157 (251)
Q Consensus 92 alA~~a~~~G~~~~ivvp~~~~~-----------~~~~~~~~~Ga~v~~v~~~~~~---~~~~~~a~~~~~~~~~~~~~~ 157 (251)
|+|++|+++|++|++|||...+. .++..++.+|+++..++...+. .................++..
T Consensus 83 a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (341)
T d1f2da_ 83 MVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIP 162 (341)
T ss_dssp HHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999987654 3566778999999999864322 122333333444433444443
Q ss_pred C--CCCCchHHHHHhhHHHHHhhhh---CCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCCcc
Q 025563 158 Q--FENPANPKIHYETTGPEIWKDS---GGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTESAM 223 (251)
Q Consensus 158 ~--~~n~~~~~~g~~t~~~EI~~q~---~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s~~ 223 (251)
. ..++... .++.+.+.++.+|+ ...+|++|+|+|+|++++|+..+++...+.++++++++..+..
T Consensus 163 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (341)
T d1f2da_ 163 AGCSEHKYGG-LGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSE 232 (341)
T ss_dssp GGGTTSTTTT-THHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHH
T ss_pred Ccccccccch-hhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHHHHhcccccccccccccchh
Confidence 3 2345554 47777777777664 4579999999999999999999999999999999999998753
|
| >d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.3e-16 Score=141.68 Aligned_cols=184 Identities=14% Similarity=0.060 Sum_probs=135.3
Q ss_pred CCcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHC-CCcE
Q 025563 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALR-GYKL 104 (251)
Q Consensus 26 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~-G~~~ 104 (251)
+.|+.++. .++|+.-.+..||+|||||++..+...+...+. .+...|+++||||+|.|.+.+.+.. ++++
T Consensus 83 ~~p~~~~~-------~~~~~lELfhGPT~aFKD~a~~~~~~~~~~~~~--~~~~~Il~ATSGDTG~Aa~~a~~~~~~i~~ 153 (428)
T d1vb3a1 83 PAPVANVE-------SDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAG--DKPVTILTATSGDTGAAVAHAFYGLPNVKV 153 (428)
T ss_dssp CCCEEEEE-------TTEEEEECCCSTTSBTHHHHHHHHHHHHHHHTT--TCCEEEEEECSSSHHHHHHHHTTTCTTEEE
T ss_pred Cccceecc-------CCceeeeeccCCCcccccchhhHHHHHHhhhcc--cccceeeecCCCCcchhHHHHHhCccccce
Confidence 45665543 268998888999999999998775544433321 1234599999999999999887766 5888
Q ss_pred EEEecC-CCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcCC----CeEecCCCCCCchHHHHHhhHHHHHhhh
Q 025563 105 IIVMPS-IASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNTP----NGFMFRQFENPANPKIHYETTGPEIWKD 179 (251)
Q Consensus 105 ~ivvp~-~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~n~~~~~~g~~t~~~EI~~q 179 (251)
+|+.|. .+++.+.++|..+|+.|+.+.-.+++|+|++.++++.++.+ .....-..-|+.+++ ++.+.+.|+..|
T Consensus 154 ~vl~P~g~vS~~Q~~Qmtt~g~nv~vi~V~G~fDDcq~lvk~~f~d~~~~~~~~l~s~NSIN~~Rl~-~Q~vyyf~a~~q 232 (428)
T d1vb3a1 154 VILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLL-AQICYYFEAVAQ 232 (428)
T ss_dssp EEEEETTCSCHHHHHHHHSCCTTEEEEEEESCHHHHHHHHHHGGGCHHHHHHHTEECCSTTSHHHHH-HTTHHHHHHHTT
T ss_pred EEEecCCCCcHHHHHHHhhccCCceEEecCCChhHHHHHHHHHhhhhhhhhcCCeeeecccChhHHh-hhHHHHHHHHHH
Confidence 999886 57888999999999977554433479999999998876531 112222234777775 999999999999
Q ss_pred hCC---CCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCC
Q 025563 180 SGG---DVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPT 219 (251)
Q Consensus 180 ~~~---~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~ 219 (251)
+.. .++.++||+|++|.+.+...+.+.--|--+++...-.
T Consensus 233 l~~~~~~~~~~~VPtGNfGni~Ag~~Ak~mGLPi~~~i~AtN~ 275 (428)
T d1vb3a1 233 LPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNV 275 (428)
T ss_dssp SCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECS
T ss_pred hccccCCceEEeccHHHHHHHHHHHHhhhcCCceeeeeccccc
Confidence 853 4789999999999999988777765565566554444
|
| >d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=1.3e-07 Score=85.44 Aligned_cols=191 Identities=14% Similarity=0.054 Sum_probs=122.2
Q ss_pred CcceecccccccCCceEEEEeCCCCCCCchhhHHHHHHHH---HHHHc-C-CC---CCCCeEEEEeccChHHHHHHHHHH
Q 025563 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIALSMIK---DAEEK-G-LI---TPGKSVLIETTGGNTGIGLAFIAA 98 (251)
Q Consensus 27 TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~l~---~a~~~-g-~~---~~g~~~vv~~ssGN~g~alA~~a~ 98 (251)
+||.++. ...+-++|+=-=+..||.+|||-++..+.. ..+++ + .+ +.....|+++|||.+|.|.+.+.+
T Consensus 96 ~pl~~~~---~~~~~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG~Aa~~af~ 172 (511)
T d1kl7a_ 96 TPLVQNV---TGDKENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLR 172 (511)
T ss_dssp SCEECCT---TCSSSCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHHHHHHHT
T ss_pred Ccccccc---cCCCCceEEEeeccCCcccccCcchhhHHHHHHHHHHhcccccccccCceEEEEEecCCCccHHHHHHhc
Confidence 6666542 222347888777788999999998765543 23322 1 00 112446999999999999998876
Q ss_pred -HCCCcEEEEecCC-CcHHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHhhcCC--CeEecCCCCCCchHH------H
Q 025563 99 -LRGYKLIIVMPSI-ASMERRIVLRALGA-EVYLADQAGGFEGILRKGEEILSNTP--NGFMFRQFENPANPK------I 167 (251)
Q Consensus 99 -~~G~~~~ivvp~~-~~~~~~~~~~~~Ga-~v~~v~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~n~~~~~------~ 167 (251)
+-+++++|+.|.+ +++-+.++|...++ .|+.+.-.+++|+|+..++++..+.. ..+-+ ..-|..|+. +
T Consensus 173 ~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~~~~~~l-~s~NSiNw~Rll~Qiv 251 (511)
T d1kl7a_ 173 GKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNV-GAVNSINWARILAQMT 251 (511)
T ss_dssp TCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC--CCB-CCCCSCCHHHHHHHHH
T ss_pred CCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHHHHHHHhhhhhhccccc-ccccceeehhhhhhHH
Confidence 5689999999985 78888888888744 55554444479999999999876542 12222 223555553 2
Q ss_pred HHhhHHHHHhhhhCCCCCEEEEecCchhHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 025563 168 HYETTGPEIWKDSGGDVDILVAGIGTGGTVTGSGRFLKEKNPNIKVYGVEPTES 221 (251)
Q Consensus 168 g~~t~~~EI~~q~~~~~d~vv~~vGtGg~~~Gi~~~~~~~~~~~~vigVep~~s 221 (251)
+|-.....+.....+++=.++||+|+=|.+.+-..+-+-=-|--|++...-+.-
T Consensus 252 yYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~Nd 305 (511)
T d1kl7a_ 252 YYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEND 305 (511)
T ss_dssp HHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCC
T ss_pred HHHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEecCCcc
Confidence 333333333332223445899999999988775554443234447777765554
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.049 Score=40.59 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=52.1
Q ss_pred HHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHH
Q 025563 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEG 138 (251)
Q Consensus 67 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~ 138 (251)
++.++..+++|++ |+..++|.-|...+..++.+|.+-++++. ..+.|++..+.+||+.+......+..+
T Consensus 17 ~a~~~~~~~~gd~-VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~~~~~~~ 85 (171)
T d1pl8a2 17 HACRRGGVTLGHK-VLVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQISKESPQE 85 (171)
T ss_dssp HHHHHHTCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECSSCCHHH
T ss_pred HHHHHhCCCCCCE-EEEECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCccccccccccccc
Confidence 3455566778887 66667899999999999999997666664 447899999999998877665434333
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.28 E-value=0.096 Score=38.71 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+.++..+++|++ ++..++|.-|...+..++.+|.+++++ +.++.|++.++.+|++...+.
T Consensus 18 a~~~~~~~~g~~-vlV~G~G~vG~~~~~~ak~~Ga~vi~v---~~~~~r~~~a~~~ga~~~~~~ 77 (170)
T d1e3ja2 18 ACRRAGVQLGTT-VLVIGAGPIGLVSVLAAKAYGAFVVCT---ARSPRRLEVAKNCGADVTLVV 77 (170)
T ss_dssp HHHHHTCCTTCE-EEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHhCCCCCCE-EEEEcccccchhhHhhHhhhccccccc---chHHHHHHHHHHcCCcEEEec
Confidence 344445677888 444578999999999999999975554 345789999999999876554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.11 Score=38.84 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=45.1
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+.+.+++|++ |+..++|.-|......++.+|.+-++++ +.++.+++.++.+||+.+....
T Consensus 22 ~~~~~~~G~~-VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~ 81 (182)
T d1vj0a2 22 EYPESFAGKT-VVIQGAGPLGLFGVVIARSLGAENVIVI--AGSPNRLKLAEEIGADLTLNRR 81 (182)
T ss_dssp TCSSCCBTCE-EEEECCSHHHHHHHHHHHHTTBSEEEEE--ESCHHHHHHHHHTTCSEEEETT
T ss_pred HHhCCCCCCE-EEEECCCccchhheeccccccccccccc--ccccccccccccccceEEEecc
Confidence 4466778888 5555679999999999999998644444 3357888999999997665544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.67 E-value=0.055 Score=39.99 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=45.2
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
++...++|++ |+...+|.-|...+..++.+|.+++++ +.++.+++..+.+||+.......
T Consensus 21 ~~~~~~~g~~-VlV~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~~~ 80 (166)
T d1llua2 21 KQTNARPGQW-VAISGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVNARQ 80 (166)
T ss_dssp HHHTCCTTCE-EEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEETTT
T ss_pred HHhCCCCCCE-EEEeeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCccccccccc
Confidence 3334667887 555677999999999999999875554 34578899999999987665443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.66 E-value=0.062 Score=40.47 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=50.4
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+.+.+++|++.+|.+.+|.-|.++...|+..|.+++.++. ++++.+.++.+|++.+.....
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~~ 83 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYKT 83 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETTS
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhccccc
Confidence 4566778898788888899999999999999999887763 467899999999988766544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.57 E-value=0.087 Score=40.36 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=49.2
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+.++..+++|++ |+...+|.-|...+..++.+|...++++. .++.|++..+.+|++.+..+..
T Consensus 17 a~~~a~v~~G~t-VlV~GaG~vGl~a~~~ak~~ga~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~~ 79 (195)
T d1kola2 17 GAVTAGVGPGST-VYVAGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIADLSLD 79 (195)
T ss_dssp HHHHTTCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEEETTSS
T ss_pred HHHHhCCCCCCE-EEEECcCHHHHHHHHHHHhhcccceeeec--ccchhhHhhhhccccEEEeCCC
Confidence 345556788888 55567899999989999999998777764 3478999999999998766544
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.047 Score=40.84 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=46.7
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+.+.+++|++.+|...+|.-|.++...|+..|.++++.. .++.|++.++.+||+-+.-.
T Consensus 22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~---~s~~k~~~~~~lGa~~vi~~ 80 (179)
T d1qora2 22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV---GTAQKAQSALKAGAWQVINY 80 (179)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEE---SSHHHHHHHHHHTCSEEEET
T ss_pred HHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecc---cchHHHHHHHhcCCeEEEEC
Confidence 456678888867777889999999999999999876654 34678888999999866543
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.024 Score=37.13 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=44.4
Q ss_pred HHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCC
Q 025563 65 IKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGA 125 (251)
Q Consensus 65 l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga 125 (251)
+....+.+...++++.+|...+|.-|....-.++.+|.+++..... ++|.+.++.+||
T Consensus 20 l~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s---~~k~~~~~~lGA 77 (77)
T d1o8ca2 20 VMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR---ESTHEYLKSLGA 77 (77)
T ss_dssp HHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTE
T ss_pred HHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECC---HHHHHHHHHCCC
Confidence 3334556666777887888888999999999999999998777643 467777887875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.08 E-value=0.13 Score=37.63 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=46.2
Q ss_pred CCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCCh
Q 025563 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGF 136 (251)
Q Consensus 73 ~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~ 136 (251)
.+++|++ |+...+|.-|...+..++..|.+++++ +.++.+++.++.+|++.+......++
T Consensus 24 ~~~~g~~-vlv~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~~~~~ 83 (168)
T d1rjwa2 24 GAKPGEW-VAIYGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPLKEDA 83 (168)
T ss_dssp TCCTTCE-EEEECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTTTSCH
T ss_pred CCCCCCE-EEEeecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceecccccchh
Confidence 3667888 555567999999999999999985554 34678999999999998877665333
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.19 Score=37.28 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=45.7
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+.+.+++|++.+|...+|.-|.+....++.+|.++++.+. ++++++.++.+|++-+.-.
T Consensus 22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi~~ 80 (174)
T d1yb5a2 22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVFNH 80 (174)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred HHhCCCCCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCccccccc
Confidence 4566788888566655799999999999999999777663 3678899999999755443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.92 E-value=0.096 Score=39.29 Aligned_cols=59 Identities=25% Similarity=0.115 Sum_probs=45.4
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
+.+...+++|++ |+...+|--|...+.+|+.+|.+-++.+. .++.|++..+.+||+-..
T Consensus 19 a~~~a~~~~g~~-VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d--~~~~r~~~a~~lGa~~~i 77 (174)
T d1jqba2 19 GAELADIEMGSS-VVVIGIGAVGLMGIAGAKLRGAGRIIGVG--SRPICVEAAKFYGATDIL 77 (174)
T ss_dssp HHHHTTCCTTCC-EEEECCSHHHHHHHHHHHTTTCSCEEEEC--CCHHHHHHHHHHTCSEEE
T ss_pred HHHHhCCCCCCE-EEEEcCCcchhhhhhhhhccccccccccc--chhhhHHHHHhhCccccc
Confidence 445666788888 55567899999999999999986566554 357889999999986544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.55 E-value=0.13 Score=37.98 Aligned_cols=63 Identities=24% Similarity=0.235 Sum_probs=46.5
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
++++..+++|++.+|...+|..|..++..++..|...++++.. ++.+++.++.+|++.+....
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~~~ 81 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVINAS 81 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEETT
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeeccC
Confidence 3445567788885555557999999999999999877666644 36889999999997655443
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.49 E-value=0.032 Score=42.53 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=48.7
Q ss_pred HcCCCCCCCeEEEE-eccChHHHHHHHHHHHCCCcEEEEecCC-CcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIE-TTGGNTGIGLAFIAALRGYKLIIVMPSI-ASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~-~ssGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+...+++|++.+|. +.+|.-|.+....|+.+|.++++++... ..+++.+.++.+||+.+...
T Consensus 22 ~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~ 85 (189)
T d1gu7a2 22 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE 85 (189)
T ss_dssp SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred HHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence 34667888775664 5678899999999999999999888654 44677888999999887654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.43 E-value=0.13 Score=38.37 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=45.5
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
......++|++ |+..++|--|...+..++.+|.+.++++.. ++.|++.++.+|+.-+.
T Consensus 21 ~~~~~~~~g~~-VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~a~~~Ga~~~i 78 (174)
T d1f8fa2 21 INALKVTPASS-FVTWGAGAVGLSALLAAKVCGASIIIAVDI--VESRLELAKQLGATHVI 78 (174)
T ss_dssp HTTTCCCTTCE-EEEESCSHHHHHHHHHHHHHTCSEEEEEES--CHHHHHHHHHHTCSEEE
T ss_pred HHhhCCCCCCE-EEEeCCCHHHhhhhhcccccccceeeeecc--HHHHHHHHHHcCCeEEE
Confidence 45566788888 555677999999999999999998777743 46889999999985443
|
| >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein AF0103 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.33 E-value=0.18 Score=38.03 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=58.1
Q ss_pred CCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecC---------CCcHHHHHHHH
Q 025563 51 EPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS---------IASMERRIVLR 121 (251)
Q Consensus 51 ~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~---------~~~~~~~~~~~ 121 (251)
+|.-.+=...+...+..|.+.|. +..||.+++|.++..++-+. .|+++++|... ..+++.++.++
T Consensus 11 ~~G~~NT~~~l~~a~~rA~Elgi----~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~ 84 (190)
T d1vp8a_ 11 KPGRENTEETLRLAVERAKELGI----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELR 84 (190)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHH
Confidence 34556677788888999999886 44467777799998877765 38888877622 35789999999
Q ss_pred HcCCEEEEeCC
Q 025563 122 ALGAEVYLADQ 132 (251)
Q Consensus 122 ~~Ga~v~~v~~ 132 (251)
..|.+|+.-..
T Consensus 85 ~~G~~V~t~tH 95 (190)
T d1vp8a_ 85 KRGAKIVRQSH 95 (190)
T ss_dssp HTTCEEEECCC
T ss_pred HcCCEEEEecc
Confidence 99999988765
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.24 E-value=0.22 Score=37.01 Aligned_cols=59 Identities=31% Similarity=0.456 Sum_probs=46.4
Q ss_pred HcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 70 EKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 70 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
+.+.+++|++.+|.+.+|..|..+.-.|+.+|.++++.+. ++++.+.++.+|++-+.-.
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~~ 77 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGDS 77 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEET
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---ccccccccccccccccccC
Confidence 4566788888566666799999999999999998888763 3577889999999865543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.71 E-value=0.094 Score=39.11 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=44.7
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
++++..+++|++.+|...+|.-|.+....|+.+|.++++++.. +.+++.++.+|++.+.
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~---~~~~~~~~~lGa~~~i 77 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEAA 77 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEEE
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccc---ccccccccccccceee
Confidence 3445667888885555667999999999999999987666532 4677888899997654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.59 E-value=0.093 Score=39.26 Aligned_cols=67 Identities=25% Similarity=0.300 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 61 ALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 61 a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
|+..+....+.|...++++.+|.+.+|--|.+..-.|+.+|.+++..+... +|.+.++.+|++.+..
T Consensus 8 A~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~---~k~~~~~~lGad~vi~ 74 (167)
T d1tt7a2 8 AALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR---EAADYLKQLGASEVIS 74 (167)
T ss_dssp HHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS---STHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH---HHHHHHHhhcccceEe
Confidence 343444455667666666768878889999999999999999988877543 5777888899997653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.56 E-value=0.31 Score=35.99 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=43.5
Q ss_pred CCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 74 ITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 74 ~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
+++|++ |+...+|.-|...+..++.+|...++++.. ++.|++.++.+|++-+....
T Consensus 30 ~~~g~~-vli~GaG~vG~~~~~~a~~~g~~~vv~~~~--~~~k~~~~~~~ga~~~i~~~ 85 (172)
T d1h2ba2 30 LYPGAY-VAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLKLAERLGADHVVDAR 85 (172)
T ss_dssp CCTTCE-EEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHHHHHHTTCSEEEETT
T ss_pred cCCCCE-EEEeCCChHHHHHHHHHHhhcCcccccccc--hhHHHHHHhhcccceeecCc
Confidence 567777 666778999999999999999887776643 46899999999997655443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.09 E-value=0.13 Score=38.83 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 61 ALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 61 a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
|+..+....+.+....+++.+|...+|.-|.+..-.|+.+|.+++.++.. +.|.+.++.+||+.+.-.
T Consensus 16 A~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~---~~k~~~~~~lGad~vi~~ 83 (177)
T d1o89a2 16 AMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR---ESTHEYLKSLGASRVLPR 83 (177)
T ss_dssp HHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTEEEEEEG
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecc---hhHHHHHHhhcccccccc
Confidence 33334444555655445566888888999999999999999999887753 456777888999877653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.3 Score=35.88 Aligned_cols=62 Identities=23% Similarity=0.211 Sum_probs=46.5
Q ss_pred HHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCC
Q 025563 67 DAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQ 132 (251)
Q Consensus 67 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~ 132 (251)
.++++..+++|++.+| .++|.-|...+..++.+|.+.+++.. ++.+++.++.+|++.+....
T Consensus 21 ~al~~~~~~~G~~VlI-~GaG~vG~~a~qlak~~Ga~~i~~~~---~~~~~~~a~~lGad~~i~~~ 82 (168)
T d1uufa2 21 SPLRHWQAGPGKKVGV-VGIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVVNSR 82 (168)
T ss_dssp HHHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEETT
T ss_pred HHHHHhCCCCCCEEEE-eccchHHHHHHHHhhcccccchhhcc---chhHHHHHhccCCcEEEECc
Confidence 3445667888888444 56799999999999999998876543 33567888999998776543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.14 Score=37.85 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=43.3
Q ss_pred HHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 68 AEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 68 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
++++..+++|++ |+..++|..|...+..++.+|.+++++.. ++.|++.++.+||+-+..
T Consensus 19 al~~~~~~~g~~-vlI~GaG~vG~~a~q~ak~~G~~vi~~~~---~~~k~~~a~~lGa~~~i~ 77 (168)
T d1piwa2 19 PLVRNGCGPGKK-VGIVGLGGIGSMGTLISKAMGAETYVISR---SSRKREDAMKMGADHYIA 77 (168)
T ss_dssp HHHHTTCSTTCE-EEEECCSHHHHHHHHHHHHHTCEEEEEES---SSTTHHHHHHHTCSEEEE
T ss_pred HHHHhCcCCCCE-EEEECCCCcchhHHHHhhhcccccccccc---chhHHHHhhccCCcEEee
Confidence 334445778888 55567799999999999999998666433 345788899999975443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.68 E-value=0.17 Score=38.15 Aligned_cols=68 Identities=31% Similarity=0.326 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeC
Q 025563 61 ALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLAD 131 (251)
Q Consensus 61 a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~ 131 (251)
|+..+....+.|...+|++.+|...+|.-|.+.--.|+.+|.+++.....+ .|.+.++.+||+.+.-.
T Consensus 16 A~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~---~k~~~~~~lGa~~vi~~ 83 (176)
T d1xa0a2 16 AALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA---AEHDYLRVLGAKEVLAR 83 (176)
T ss_dssp HHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT---TCHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCch---HHHHHHHhcccceeeec
Confidence 333444455678777788878888889999998899999999998877544 46777888999976643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.06 E-value=0.39 Score=35.72 Aligned_cols=59 Identities=24% Similarity=0.235 Sum_probs=47.9
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
.+...+++|++ |+..++|--|...+..++.+|.+.++++.. ++.|++..+.+||+.+.-
T Consensus 21 ~~~a~v~~G~~-VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~a~~~Ga~~~i~ 79 (174)
T d1e3ia2 21 INTAKVTPGST-CAVFGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPKAKALGATDCLN 79 (174)
T ss_dssp HTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred HHhhCCCCCCE-EEEECCChHHHHHHHHHHHhCCceeeeecc--chHHHHHHHHhCCCcccC
Confidence 45667888888 666688999999999999999988887744 457889999999977654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.93 Score=31.13 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.7
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC
Q 025563 75 TPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA 112 (251)
Q Consensus 75 ~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~ 112 (251)
.++.++|-.-++|..|+-+|.+|+++|++++++-|...
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 34455688888999999999999999999999876643
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.58 E-value=0.4 Score=35.93 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=44.3
Q ss_pred CCCCCC--CeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCCh
Q 025563 72 GLITPG--KSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGF 136 (251)
Q Consensus 72 g~~~~g--~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~ 136 (251)
+.+++| ++.+|.+.+|.-|.+..-.|+.+|.+.++.+... ++.+....+.+|++.+.-....++
T Consensus 24 ~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-~e~~~~l~~~~gad~vi~~~~~~~ 89 (187)
T d1vj1a2 24 GHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-QEKCLFLTSELGFDAAVNYKTGNV 89 (187)
T ss_dssp SCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-HHHHHHHHHHSCCSEEEETTSSCH
T ss_pred hCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccch-HHHHhhhhhcccceEEeeccchhH
Confidence 445554 6656666679999999999999999987765433 344555566899988776654343
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.15 E-value=0.74 Score=34.01 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=47.3
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
.+.+.+++|++ |+....|--|......++.+|.+.++.++. ++.|++..+.+||+-+.-
T Consensus 20 ~~~a~~~~G~~-VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i~ 78 (174)
T d1p0fa2 20 VNTAKVTPGST-CAVFGLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECLN 78 (174)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred HHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEEc
Confidence 45667888988 566678999999999999999988887744 468888899999987653
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=1.2 Score=34.90 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=44.8
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcC--CEEEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALG--AEVYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~G--a~v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+..++--|.++|....+.|.++++.- .+.. ....+.++..| .+++.+ +-. +.++..+...+..++.
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~-r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls-~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCA-RTVGNIEELAAECKSAGYPGTLIPYRCDLS-NEEDILSMFSAIRSQH 87 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-SCHHHHHHHHHHHHHTTCSSEEEEEECCTT-CHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE-CCHHHHHHHHHHHHhcCCCceEEEEEccCC-CHHHHHHHHHHHHHhc
Confidence 45668888889999999999999999876654 3321 12234455554 465543 332 4455555555555554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.64 E-value=0.39 Score=35.78 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=46.5
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
.+++.+++|++ |+....|--|......|+.+|..-+|.++. +++|++..+.+||+.+.-
T Consensus 22 ~~~~~~~~g~t-VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~~GA~~~in 80 (176)
T d1d1ta2 22 VKTGKVKPGST-CVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMAVGATECIS 80 (176)
T ss_dssp HTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHHTCSEEEC
T ss_pred HHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHhcCCcEEEC
Confidence 35566788888 666778999999999999999877777643 467888999999976553
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=90.13 E-value=1.1 Score=35.54 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=44.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHH-HHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERR-IVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~-~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.||+.+++.-|+++|..-.+.|.++++.-..... .... +.....|.++..+.-. .+.++..+......++.
T Consensus 25 gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA 101 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence 4667889989999999999999999988776533211 1222 2334556665554321 24444444444444444
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.94 E-value=0.41 Score=35.11 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=44.3
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.+++.+++|++ |+....|--|......++.+|.+.++.+.. ++.|++..+.+||+-..
T Consensus 21 ~~~~~~~~G~t-VlI~GaGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~ak~lGa~~~i 78 (176)
T d2fzwa2 21 VNTAKLEPGSV-CAVFGLGGVGLAVIMGCKVAGASRIIGVDI--NKDKFARAKEFGATECI 78 (176)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred HHhhCCCCCCE-EEEecchhHHHHHHHHHHHHhcCceEEEcc--cHHHHHHHHHhCCcEEE
Confidence 35677889988 555556777888888899999988887744 46778888999987654
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=89.83 E-value=0.88 Score=35.50 Aligned_cols=74 Identities=24% Similarity=0.183 Sum_probs=51.1
Q ss_pred CCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecC-----CCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHH
Q 025563 73 LITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS-----IASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEI 146 (251)
Q Consensus 73 ~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~-----~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~ 146 (251)
.++|+++.+|+..+|--|+++|..-.+.|.+.++++.+ ......++.++..|+++..+.-. .+.++..+...++
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i 84 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 84 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence 45677888888889999999999999999986666533 23345677788899988766432 2444444444443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.70 E-value=0.68 Score=36.44 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=54.0
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
.|++.+|+.+++--|.++|..-.+.|.++++....+.. +...+.++..|.+++.+..+ .+.+++.+..++..++.
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 35677888888999999999999999998876655433 33466788899888766432 25566666666666655
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=89.60 E-value=0.92 Score=35.75 Aligned_cols=74 Identities=12% Similarity=-0.053 Sum_probs=52.1
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQ-AGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|+++|....+.|.++++.-.... -....+.++..|.+++...- -.+.++..+..++..++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 567799999999999999999999999777654321 13446678888888755432 124556666666666654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=88.93 E-value=2.2 Score=33.34 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=46.8
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH--HHHH-HHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM--ERRI-VLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~-~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+..++.-|+++|....+.|.++++.-..+... ...+ .....|.++..+..+ .+.++..+..++..++.
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45668888889999999999999999876654332211 1122 234568888766532 24555555556655554
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.74 E-value=1.1 Score=35.14 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=51.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|+..+|+.+++.-|+++|....+.|.++++.-.... -....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 77 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 455688999999999999999999999766643211 123456677888877655432 35566666667777766
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=87.92 E-value=0.91 Score=33.25 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=44.4
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
.+.+.+++|++ |+..+.|--|...+..++.+|...++.+.. ++.|++..+.+|++-...
T Consensus 21 ~~~~~vk~Gdt-VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~--~~~k~~~a~~~Ga~~~i~ 79 (176)
T d2jhfa2 21 VKVAKVTQGST-CAVFGLGGVGLSVIMGCKAAGAARIIGVDI--NKDKFAKAKEVGATECVN 79 (176)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred HHhhCCCCCCE-EEEECCCCcHHHHHHHHHHcCCceEEeecC--cHHHHHHHHHhCCeeEEe
Confidence 35677889988 555666778888899999999888887744 457788888888765443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=87.91 E-value=1.7 Score=33.84 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|+++|..-.+.|.++++.- .+..+.....++..|.+++.+..+ .+.++..+..++..++.
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~-~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIAD-LVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-SSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE-CCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 46678888889999999999999999877654 333455566788899887665432 35556666666665554
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.44 E-value=1.7 Score=31.59 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=41.8
Q ss_pred HHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEe
Q 025563 69 EEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLA 130 (251)
Q Consensus 69 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v 130 (251)
.+.+.+++|++ |+...+|--|...+..++.+|-..++.+.. .+.|++.++.+||+-..-
T Consensus 21 ~~~a~~k~g~~-VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~--~~~rl~~a~~~GAd~~in 79 (175)
T d1cdoa2 21 VNTAKVEPGST-CAVFGLGAVGLAAVMGCHSAGAKRIIAVDL--NPDKFEKAKVFGATDFVN 79 (175)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCCEEEC
T ss_pred HHhhCCCCCCE-EEEEecCCccchHHHHHHHHhhchheeecc--hHHHHHHHHHcCCcEEEc
Confidence 35566888888 555556666777777788888877777644 357888899999866553
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=87.30 E-value=1.9 Score=33.59 Aligned_cols=70 Identities=23% Similarity=0.191 Sum_probs=52.4
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|+++|..-.+.|.++++.-... ++.+..+..+++.+.++-. +.++..+..++..++.
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~---~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP---EGKEVAEAIGGAFFQVDLE-DERERVRFVEEAAYAL 74 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST---THHHHHHHHTCEEEECCTT-CHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHhc
Confidence 56778999999999999999999999876654332 2345667788999888765 5666666666666655
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.93 E-value=2.7 Score=32.84 Aligned_cols=74 Identities=22% Similarity=0.110 Sum_probs=46.1
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHH--HcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLR--ALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~--~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|+++|..-.+.|.++++.-..... ......+. ..+.+++.+..+ .+.++..+..++..++.
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 4667888888999999999999999987665432211 11122232 246677655321 25566666666666655
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=86.92 E-value=3.6 Score=32.08 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEe
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVM 108 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivv 108 (251)
|++.+|+.+++--|+++|....+.|.++++.-
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~ 37 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIAD 37 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 46678888889999999999999999876654
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=86.89 E-value=0.34 Score=31.40 Aligned_cols=49 Identities=14% Similarity=0.007 Sum_probs=37.5
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA 133 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~ 133 (251)
+|..-++|..|+-++.+|+++|++++++-|....+... .-.+++.++-+
T Consensus 3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~~-----~a~dvIT~e~E 51 (78)
T d3etja2 3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVP-----FQQSVITAEIE 51 (78)
T ss_dssp EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGSC-----GGGSEEEESSS
T ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCcccc-----cccceEEEeec
Confidence 37778899999999999999999999999876544311 12367777654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.74 E-value=1.4 Score=34.63 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=52.5
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc--HHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS--MERRIVLRALGAEVYLADQ-AGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~v~~-~~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+..++.-|+++|....+.|.++++.-..... ....+.++..|.+++.+.. ..+.++..+..++..++.
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 4667888888999999999999999998876544322 2346667888988866542 235566666666665554
|
| >d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein MTH1675 species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=86.67 E-value=1.1 Score=33.58 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=53.6
Q ss_pred CCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecC---------CCcHHHHHHHH
Q 025563 51 EPCCSVKDRIALSMIKDAEEKGLITPGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPS---------IASMERRIVLR 121 (251)
Q Consensus 51 ~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~---------~~~~~~~~~~~ 121 (251)
+|.-.+=...+...+..|.+.|. +..||.+++|.++..++-+. .-++++|... ..+++..+.++
T Consensus 10 ~~G~~NT~~~l~~a~~ra~elgi----~~iVvAStsG~TA~~~~e~~---~~~lvvVth~~GF~~pg~~e~~~e~~~~L~ 82 (186)
T d1t57a_ 10 EPGKENTERVLELVGERADQLGI----RNFVVASVSGETALRLSEMV---EGNIVSVTHHAGFREKGQLELEDEARDALL 82 (186)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTTC---CSEEEEECCCTTSSSTTCCSSCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHhc---CCCEEEEecccCCCCCCCCccCHHHHHHHH
Confidence 34556677788888899999886 44466777799987664433 3365555421 24688999999
Q ss_pred HcCCEEEEeCCC
Q 025563 122 ALGAEVYLADQA 133 (251)
Q Consensus 122 ~~Ga~v~~v~~~ 133 (251)
..|.+|+.-...
T Consensus 83 ~~G~~V~t~tH~ 94 (186)
T d1t57a_ 83 ERGVNVYAGSHA 94 (186)
T ss_dssp HHTCEEECCSCT
T ss_pred HcCCEEEEeccc
Confidence 999999887653
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=86.36 E-value=1.8 Score=34.06 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=51.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC--cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA--SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|+++|....+.|.++++.-.... .....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 456688888899999999999999998877654432 234466788899888766432 24555555556655554
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=85.92 E-value=1.7 Score=33.97 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=50.3
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcH-H-HHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASM-E-RRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-~-~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|+++|..-.+.|.++++.-...... . ..+..+.+|.++..+..+ .+.++..+..++..++.
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL 85 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46668888889999999999999999877766443322 2 233346678877655432 24556666667776665
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.43 E-value=3 Score=32.37 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=43.7
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HHHHHHHHH--cCCEEEE--eCCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-MERRIVLRA--LGAEVYL--ADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~~~~--~Ga~v~~--v~~~~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++--|+++|....+.|.++++.-..... ......++. .+.++.. +|-. +.++..+..++..++.
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA-DQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTT-SHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecC-CHHHHHHHHHHHHHHc
Confidence 5677888888999999999999999987665432211 112222322 2444544 3433 4555555555555554
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.28 E-value=2.4 Score=32.98 Aligned_cols=74 Identities=24% Similarity=0.201 Sum_probs=50.9
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHhhcC
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLA--DQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v--~~~~~~~~~~~~a~~~~~~~ 150 (251)
.|++.+|+..++--|+++|..-.+.|.++++.-.... -....+.++..|.+++.+ |-+ +.++..+..++..++.
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs-~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCS-NREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-CHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-CHHHHHHHHHHHHHHc
Confidence 4677788888899999999999999999777543221 123345577788776554 433 5566666666666655
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=85.26 E-value=3.5 Score=31.13 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHH-cCCCC-CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEE
Q 025563 58 DRIALSMIKDAEE-KGLIT-PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYL 129 (251)
Q Consensus 58 ~R~a~~~l~~a~~-~g~~~-~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 129 (251)
.++..+.+..+.+ +|.-. .|++ |+..+-||-|..+|......|.++++. +....++.....+|++.+.
T Consensus 6 a~Gv~~~~~~~~~~~g~~~L~gk~-v~IqG~G~VG~~~A~~L~~~Gakvvv~---d~d~~~~~~~~~~g~~~~~ 75 (201)
T d1c1da1 6 AVGVFEAMKATVAHRGLGSLDGLT-VLVQGLGAVGGSLASLAAEAGAQLLVA---DTDTERVAHAVALGHTAVA 75 (201)
T ss_dssp HHHHHHHHHHHHHHTTCCCSTTCE-EEEECCSHHHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEe---cchHHHHHHHHhhcccccC
Confidence 3566666766543 44322 3454 888999999999999999999987654 3346677777778877653
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=85.25 E-value=2.9 Score=32.27 Aligned_cols=72 Identities=19% Similarity=0.109 Sum_probs=50.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|.++|......|.++++.-... ....+.++.+|.+++.+..+ .+.++..+..++..++.
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREE--RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 56678899999999999999999999887764322 33445567788887666432 24556656566665544
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=85.23 E-value=3 Score=32.40 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=42.4
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHH-HHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRI-VLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~-~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++--|+++|......|.++++. .. ++.+++ ..+.+|.+.+.+... .+.++..+..++..++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~-~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFS-DI--NEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEE-CS--CHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE-EC--CHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 4666888888889999999989999986554 22 233332 344556666555432 23444444444444443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.19 E-value=1.6 Score=34.18 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=49.9
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++--|+++|....+.|.++++.-.... -....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 466788888899999999999999998777643211 133456678888877665432 24556666566655554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=83.34 E-value=2.1 Score=33.35 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=48.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCc-HH-HHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIAS-ME-RRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~-~~-~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|+++|....+.|.++++.-..... .. ..+..+.+|.+++.+..+ .+.++..+..++..++.
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4667889999999999999999999987666432211 12 223346778887655332 24555566666665554
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=83.06 E-value=3.8 Score=31.86 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=50.1
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
.|++.||+..++--|+++|....+.|.++++.-.... -....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 3567788999999999999999999998766543211 123455677788877655332 24556666666665554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=82.94 E-value=2.1 Score=33.53 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|+++|....+.|.++++.-.... .....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 567788888899999999999999998666532211 123345677788877665432 24555566666665554
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=82.31 E-value=2.9 Score=32.43 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=48.9
Q ss_pred EEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 80 VLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 80 ~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
.+|+.+++.-|+++|....+.|.++++.-.... -....+.++..|.+++.+..+ .+.++..+..++..++.
T Consensus 4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL 76 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 478888899999999999999998766543221 123455677888887665432 35566666667776665
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=82.00 E-value=2.2 Score=33.19 Aligned_cols=74 Identities=18% Similarity=0.100 Sum_probs=49.5
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
+++.+|+.+++--|+++|..-.+.|.++++.-.... -....+.++..|.++..+..+ .+.++..+..++..++.
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 356688888889999999999999998766543211 123355677888877665432 24556666666666665
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.77 E-value=4.9 Score=31.12 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=47.7
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHHcC--CEEEEeCCCCChHHHHHHHHHHhhcC
Q 025563 76 PGKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRALG--AEVYLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 76 ~g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~G--a~v~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
.|++.+|+.+++.-|+++|....+.|.++++.- . ++++++.+.... +..+.+|-. +.++..+..++..++.
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~-r--~~~~~~~~~~~~~~~~~~~~Dvs-~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICD-K--DESGGRALEQELPGAVFILCDVT-QEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE-S--CHHHHHHHHHHCTTEEEEECCTT-SHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE-C--CHHHHHHHHHhcCCCeEEEccCC-CHHHHHHHHHHHHHhc
Confidence 356778999999999999999999999877753 2 345555554433 333444443 5666666666666554
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=80.70 E-value=4.7 Score=31.21 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=49.0
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCCcHHHHHHHHH--cCCEE--EEeCCCCChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIASMERRIVLRA--LGAEV--YLADQAGGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~--~Ga~v--~~v~~~~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++--|.++|..-.+.|.+++++.........+..++. .+.++ +.++-..+.++..+...+..++.
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 82 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence 4667888888889999999999999999999876555555554433 23355 44444334444555555555554
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.05 E-value=2.6 Score=32.89 Aligned_cols=74 Identities=14% Similarity=-0.115 Sum_probs=48.2
Q ss_pred CCeEEEEeccChHHHHHHHHHHHCCCcEEEEecCCC-cHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHhhcC
Q 025563 77 GKSVLIETTGGNTGIGLAFIAALRGYKLIIVMPSIA-SMERRIVLRALGAEVYLADQA-GGFEGILRKGEEILSNT 150 (251)
Q Consensus 77 g~~~vv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~a~~~~~~~ 150 (251)
|++.+|+.+++.-|+++|....+.|.++++.-.... -....+.++..+.+++.+..+ .+.++..+..++..++.
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 567788888899999999999999998776543221 123355566777776554321 24455555556655553
|