Citrus Sinensis ID: 025564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFLDF
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHccccccEEEEEcccEEEEcccccccHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHcccccccccEEEcHHHHHHHHHHccccccHHccccEEEEEEccccccccccccccEEEcccccccEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEEccccccccccEEEcccHHHHHHHHHcccEEEEEcccHHHHHHHHcccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcHHHHHHHccccEEEEEcccEEcccccccHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHcccccHHcccccEEEEEccccccHHHcccccEEcccHHHccEEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEcccEEEEccccEEccHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
miakcsvqsndphlfQTLNGLRHIAETRRFKAWLLDqfgvlhdgkkpypgaiSTLEMLATTGAKMVVIsnssrrasttidklkslgfdpslfagaitsgelTHQYLLRRDDAWFAALGRScihmtwsdrgaisleglglkvvenVEEADFILAhgtegmglpsgdvrpmsLQDLEKILEICaskkipmvvanpdyVTVEARALRVMPGTLASKFEKLggevrwmgkpDKVVQLLCSLSSSVIILFLIFLDF
Flexible Loop (DISEMBL)
miakcsvqsndphlfQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVvisnssrraSTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHgtegmglpsGDVRPMSLQDLEKILEIcaskkipmvvaNPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFLDF
Low Complexity Region (SEG)
MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKvvqllcslsssviilflifldf
Disordered region (IsUnstruct)
************HLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN******TTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL**
Disordered Region (DISOPRED)
********************LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFLDF
Disordered Region (DISEMBL)
********SNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFLDF
Disordered Region (DISPRO)
***********PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFLDF
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFLDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q3ZBF9	296	Pyridoxal phosphate phosp	yes	no	0.314	0.266	0.369	8e-05
Q96GD0	296	Pyridoxal phosphate phosp	yes	no	0.334	0.283	0.359	0.0003
Q00472	298	4-nitrophenylphosphatase	yes	no	0.378	0.318	0.282	0.0009

>sp|Q3ZBF9|PLPP_BOVIN Pyridoxal phosphate phosphatase OS=Bos taurus GN=PDXP PE=1 SV=1

 Score = 47.8 bits (112), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 18  RAQGVLFDCNGVLWNGERAVPGAPELLERLAQAGKATLFVSNNSRRARPELALRFARLGF 77

Query: 88  ----DPSLFAGAITSGELTHQYLL 107
                  LF+ A+ +  L  Q LL
Sbjct: 78  GGLRSEQLFSSALCAARLLRQRLL 101

Protein serine phosphatase that dephosphorylates 'Ser-3' in cofilin and probably also dephosphorylates phospho-serine residues in DSTN. Regulates cofilin-dependent actin cytoskeleton reorganization. Required for normal progress through mitosis and normal cytokinesis. Does not dephosphorylate phospho-threonines in LIMK1. Does not dephosphorylate peptides containing phospho-tyrosine. Pyridoxal phosphate phosphatase. Has some activity towards pyridoxal 5'-phosphate (PLP), pyridoxine 5'-phosphate (PMP) and pyridoxine 5'-phosphate (PNP), with a highest activity with PLP followed by PNP.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 7EC: 4

>sp|Q96GD0|PLPP_HUMAN Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 18  RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 77

Query: 88  D----PSLFAGAITSGELTHQYLLRRDDA 112
                  LF+ A+ +  L  Q L    DA
Sbjct: 78  GGLRAEQLFSSALCAARLLRQRLPGPPDA 106

Protein serine phosphatase that dephosphorylates 'Ser-3' in cofilin and probably also dephosphorylates phospho-serine residues in DSTN. Regulates cofilin-dependent actin cytoskeleton reorganization. Required for normal progress through mitosis and normal cytokinesis. Does not dephosphorylate phospho-threonines in LIMK1. Does not dephosphorylate peptides containing phospho-tyrosine. Pyridoxal phosphate phosphatase. Has some activity towards pyridoxal 5'-phosphate (PLP), pyridoxine 5'-phosphate (PMP) and pyridoxine 5'-phosphate (PNP), with a highest activity with PLP followed by PNP.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 7

EC: 4

>sp|Q00472|PNPP_SCHPO 4-nitrophenylphosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pho2 PE=4 SV=2

 Score = 44.3 bits (103), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGF 87
           +F  +L D  GVL  G KP PG   T+++L + G +++ +SN+S ++  T ++K+   G 
Sbjct: 17  KFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNSTKSRETYMNKINEHGI 76

Query: 88  DPSL---FAGAITSGELTHQYLLRRDDAWFAALGRSCIH 123
              L   +  A +S     + L    D     LG + I 
Sbjct: 77  AAKLEEIYPSAYSSATYVKKVLKLPADKKVFVLGEAGIE 115

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
255567758	313	catalytic, putative [Ricinus communis] g	0.920	0.738	0.792	1e-109
224127222	308	predicted protein [Populus trichocarpa]	0.896	0.730	0.768	1e-100
449452883	313	PREDICTED: uncharacterized hydrolase Yut	0.920	0.738	0.783	2e-97
413968592	223	HAD superfamily protein [Solanum tuberos	0.868	0.977	0.778	6e-97
297807077	306	hypothetical protein ARALYDRAFT_909002 [	0.884	0.725	0.744	8e-97
225434150	314	PREDICTED: uncharacterized hydrolase yut	0.920	0.735	0.758	4e-96
357475623	312	hypothetical protein MTR_4g087590 [Medic	0.916	0.737	0.761	2e-95
42567769	306	haloacid dehalogenase-like hydrolase dom	0.884	0.725	0.731	3e-94
19310550	316	unknown protein [Arabidopsis thaliana]	0.884	0.702	0.731	3e-94
356500114	315	PREDICTED: uncharacterized hydrolase yut	0.920	0.733	0.751	2e-93

>gi|255567758|ref|XP_002524857.1| catalytic, putative [Ricinus communis] gi|223535820|gb|EEF37481.1| catalytic, putative [Ricinus communis]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/231 (79%), Positives = 213/231 (92%)

Query: 1   MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLAT 60
           M+ + S++ N+ HLFQT NGL+H+AETRRFKAWLLDQFGVLHDGK+PYPGAISTL+ +A+
Sbjct: 1   MMPQSSIKYNEAHLFQTFNGLQHLAETRRFKAWLLDQFGVLHDGKQPYPGAISTLKKIAS 60

Query: 61  TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRS 120
           +GAKMV+ISNSSRRASTT+DK+KSLGFDPSLF GAITSGELTHQ+L RRDD WFAALG+S
Sbjct: 61  SGAKMVIISNSSRRASTTMDKMKSLGFDPSLFVGAITSGELTHQFLQRRDDDWFAALGKS 120

Query: 121 CIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEI 180
           CIHMTWSDRGAISLEGLGL+VVENVEEA F+LAHGTE +G PSG   PM+L++LEKILE 
Sbjct: 121 CIHMTWSDRGAISLEGLGLQVVENVEEAAFVLAHGTEALGQPSGAACPMTLEELEKILEH 180

Query: 181 CASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVV 231
           CA+K IPMVVANPD+VTVEAR LRVMPGTLA+K+EKLGGEV+WMGKPDK++
Sbjct: 181 CAAKGIPMVVANPDFVTVEARNLRVMPGTLAAKYEKLGGEVKWMGKPDKII 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127222|ref|XP_002329430.1| predicted protein [Populus trichocarpa] gi|222870480|gb|EEF07611.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/225 (76%), Positives = 203/225 (90%)

Query: 7   VQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMV 66
           +QS++  LFQT NGL+HIA+T +FKAW LDQFGVLHDGK+PYPGAISTL+ LATTGAKMV
Sbjct: 2   LQSSELQLFQTFNGLQHIAKTHQFKAWFLDQFGVLHDGKQPYPGAISTLQKLATTGAKMV 61

Query: 67  VISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTW 126
           +ISNSSRRASTT++K+KSLGFD SLF GAITSGELTHQYL RRD  WFAALG+SCIHMTW
Sbjct: 62  IISNSSRRASTTMEKMKSLGFDTSLFLGAITSGELTHQYLQRRDADWFAALGKSCIHMTW 121

Query: 127 SDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKI 186
             RGAISLEGLGL+VV+ VEEA+F+LAHGTE +GL SG   PM+L++LEK+LE CA+K+I
Sbjct: 122 KGRGAISLEGLGLQVVDKVEEAEFVLAHGTEALGLSSGASCPMTLEELEKVLERCAAKQI 181

Query: 187 PMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVV 231
           PMVVANPD+VTVEAR LRVMPGTLA+K+EKLGGEV+ MGKPDK++
Sbjct: 182 PMVVANPDFVTVEARDLRVMPGTLAAKYEKLGGEVKSMGKPDKII 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452883|ref|XP_004144188.1| PREDICTED: uncharacterized hydrolase YutF-like [Cucumis sativus] gi|449511400|ref|XP_004163945.1| PREDICTED: uncharacterized hydrolase YutF-like [Cucumis sativus]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/231 (78%), Positives = 205/231 (88%)

Query: 1   MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLAT 60
           M    SV S + HLFQ+ NGL+ +A+T RFKAW LDQFGVLHDGK+PYPGA+  LE LA 
Sbjct: 1   MAPGWSVMSPESHLFQSCNGLQQLAQTCRFKAWFLDQFGVLHDGKQPYPGAVLALEKLAE 60

Query: 61  TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRS 120
            G KMV+ISNSSRR+STT++KLKSLGFDPSLF GAITSGELTH+YL RRDDAWFAALGRS
Sbjct: 61  CGTKMVIISNSSRRSSTTMEKLKSLGFDPSLFVGAITSGELTHRYLQRRDDAWFAALGRS 120

Query: 121 CIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEI 180
           CIHMTWS RGAISLEGLGL+VV+NVEEA+FILAHGTE +G PSGD  PM+L++LEKILE 
Sbjct: 121 CIHMTWSSRGAISLEGLGLRVVDNVEEAEFILAHGTEALGHPSGDSLPMTLEELEKILEQ 180

Query: 181 CASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVV 231
           CA+KKIPMVVANPDYVTVEAR LRVMPGTLASK+EKLGGEV+WMGKPDK++
Sbjct: 181 CAAKKIPMVVANPDYVTVEARDLRVMPGTLASKYEKLGGEVKWMGKPDKII 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413968592|gb|AFW90633.1| HAD superfamily protein [Solanum tuberosum]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 172/221 (77%), Positives = 198/221 (89%), Gaps = 3/221 (1%)

Query: 1   MIAKC-SVQSNDPH--LFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEM 57
           M+ +C SVQS++P    FQTLNG++H+AE+RRFKAW LDQFGVLHDGK+PYPGAIS LE 
Sbjct: 1   MMGRCLSVQSSNPTELKFQTLNGIQHLAESRRFKAWFLDQFGVLHDGKQPYPGAISALEK 60

Query: 58  LATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAAL 117
           LAT GAKMV+ISNSSRRASTT++KL+SLGFDPSLF GAI SGELTHQYL  R+DAWFA++
Sbjct: 61  LATFGAKMVIISNSSRRASTTLEKLRSLGFDPSLFIGAIMSGELTHQYLQTREDAWFASI 120

Query: 118 GRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKI 177
           GRSCIHMTWSDRGAISL+GLGL+VVENVEEADFILAHGTE +GL SG   PM+L +LEKI
Sbjct: 121 GRSCIHMTWSDRGAISLKGLGLEVVENVEEADFILAHGTEALGLSSGAAIPMNLDELEKI 180

Query: 178 LEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLG 218
           L+ CA+KKIPMVVANPD+VTVEARALRVMPGTLA+ +EKL 
Sbjct: 181 LDRCATKKIPMVVANPDFVTVEARALRVMPGTLAATYEKLA 221

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807077|ref|XP_002871422.1| hypothetical protein ARALYDRAFT_909002 [Arabidopsis lyrata subsp. lyrata] gi|297317259|gb|EFH47681.1| hypothetical protein ARALYDRAFT_909002 [Arabidopsis lyrata subsp. lyrata]

 Score =  358 bits (920), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 169/227 (74%), Positives = 193/227 (85%), Gaps = 5/227 (2%)

Query: 5   CSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAK 64
           CS Q + P     +NGL+ I ETR FKAWLLDQ+GVLHDGKKPYPGAISTL+ LAT GAK
Sbjct: 3   CSSQISQP-----MNGLKDIVETRNFKAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAK 57

Query: 65  MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHM 124
           +V+ISNSSRRASTT++KLK LGFDPS F GAITSGELTHQ L RRDD WFAALGRSCIHM
Sbjct: 58  IVIISNSSRRASTTMEKLKGLGFDPSYFTGAITSGELTHQSLQRRDDPWFAALGRSCIHM 117

Query: 125 TWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASK 184
           TW+DRGAISLEGL L VVENVEEADF+LAHGTE +GLPSG V P +L +LEKILE  A++
Sbjct: 118 TWNDRGAISLEGLDLNVVENVEEADFVLAHGTEALGLPSGSVSPRTLDELEKILEKSAAR 177

Query: 185 KIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVV 231
            +PM+VANPDYVTVEA    +MPGTLASK+E+LGGEV+WMGKP K++
Sbjct: 178 GLPMIVANPDYVTVEANVFHIMPGTLASKYEELGGEVKWMGKPHKMI 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434150|ref|XP_002278008.1| PREDICTED: uncharacterized hydrolase yutF [Vitis vinifera] gi|296084318|emb|CBI24706.3| unnamed protein product [Vitis vinifera]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 176/232 (75%), Positives = 205/232 (88%), Gaps = 1/232 (0%)

Query: 1   MIAKCSVQ-SNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLA 59
           M+ +CS+  S+D  LF T NG++ +++T  FKAW LDQFGVLHDGK+PYPGAISTLE LA
Sbjct: 1   MMPRCSISPSSDVQLFHTFNGIQQLSQTHHFKAWFLDQFGVLHDGKQPYPGAISTLEKLA 60

Query: 60  TTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGR 119
           T+GAKMV+ISNSSRR+S TI+K+KSLGFDPSLF GAITSGELTHQ+LLRRDDA FA LGR
Sbjct: 61  TSGAKMVIISNSSRRSSITIEKMKSLGFDPSLFVGAITSGELTHQHLLRRDDAGFAKLGR 120

Query: 120 SCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILE 179
           SCIHMTWSDRGAISLEGLGL+VV+ VEEA+F+LAHGTE +GLPSG V PM L+DLEKIL 
Sbjct: 121 SCIHMTWSDRGAISLEGLGLQVVDKVEEAEFVLAHGTEALGLPSGAVLPMKLEDLEKILG 180

Query: 180 ICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVV 231
            CA+K IPMVVANPD+VTVEARA  VMPG LA+K+EKLGGEV+WMGKPDK++
Sbjct: 181 RCAAKNIPMVVANPDFVTVEARAFCVMPGALAAKYEKLGGEVKWMGKPDKII 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475623|ref|XP_003608097.1| hypothetical protein MTR_4g087590 [Medicago truncatula] gi|355509152|gb|AES90294.1| hypothetical protein MTR_4g087590 [Medicago truncatula]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 176/231 (76%), Positives = 202/231 (87%), Gaps = 1/231 (0%)

Query: 1   MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLAT 60
           MI KCS  S  P  FQT  GLR +AETRRFK WLLDQFGVLHDGK+PYPGAISTLE +A 
Sbjct: 1   MIPKCS-SSLHPLQFQTFTGLRQLAETRRFKVWLLDQFGVLHDGKQPYPGAISTLENIAK 59

Query: 61  TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRS 120
           TG KMV+ISNSSRR+S T++K+KSLGFD SLF GAITSGELTHQYL RRDD WFA+LGRS
Sbjct: 60  TGGKMVIISNSSRRSSVTLEKVKSLGFDASLFLGAITSGELTHQYLQRRDDPWFASLGRS 119

Query: 121 CIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEI 180
           CIH TWS RGAISLEGL L+VVENVEEA+F+LAHGTE +G  +G+ R M L+DLE+ILE+
Sbjct: 120 CIHFTWSGRGAISLEGLDLRVVENVEEAEFVLAHGTEALGGANGNARSMKLEDLEQILEL 179

Query: 181 CASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVV 231
           CA+K+IPMVVANPDYVTVEAR LRVMPGTLA+K+EKLGGEV+WMGKPD+++
Sbjct: 180 CAAKRIPMVVANPDYVTVEARDLRVMPGTLAAKYEKLGGEVKWMGKPDEII 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567769|ref|NP_196608.2| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] gi|50198963|gb|AAT70484.1| At5g10460 [Arabidopsis thaliana] gi|332004162|gb|AED91545.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 191/227 (84%), Gaps = 5/227 (2%)

Query: 5   CSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAK 64
           CS Q     L Q +NGL+ I ETR FKAWLLDQ+GVLHDGKKPYPGAISTL+ LAT GAK
Sbjct: 3   CSSQ-----LSQPMNGLKDIVETRNFKAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAK 57

Query: 65  MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHM 124
           +V+ISNSSRRASTT++KLK LGFDPS F GAITSGELTHQ L RRDD WFAALGR CIH+
Sbjct: 58  IVIISNSSRRASTTMEKLKGLGFDPSFFTGAITSGELTHQSLQRRDDPWFAALGRRCIHI 117

Query: 125 TWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASK 184
           TW+DRGAISLEGL L VVENVEEADF+LAHGTE +GLPSG V P ++ +LEKILE  A++
Sbjct: 118 TWNDRGAISLEGLDLNVVENVEEADFVLAHGTEALGLPSGSVSPRTIDELEKILEKSAAR 177

Query: 185 KIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVV 231
            +PM+VANPDYVTVEA    +MPGTLASK+E+LGGEV+ MGKP K++
Sbjct: 178 GLPMIVANPDYVTVEANVFHIMPGTLASKYEELGGEVKSMGKPHKMI 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19310550|gb|AAL85008.1| unknown protein [Arabidopsis thaliana]

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 191/227 (84%), Gaps = 5/227 (2%)

Query: 5   CSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAK 64
           CS Q     L Q +NGL+ I ETR FKAWLLDQ+GVLHDGKKPYPGAISTL+ LAT GAK
Sbjct: 13  CSSQ-----LSQPMNGLKDIVETRNFKAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAK 67

Query: 65  MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHM 124
           +V+ISNSSRRASTT++KLK LGFDPS F GAITSGELTHQ L RRDD WFAALGR CIH+
Sbjct: 68  IVIISNSSRRASTTMEKLKGLGFDPSFFTGAITSGELTHQSLQRRDDPWFAALGRRCIHI 127

Query: 125 TWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASK 184
           TW+DRGAISLEGL L VVENVEEADF+LAHGTE +GLPSG V P ++ +LEKILE  A++
Sbjct: 128 TWNDRGAISLEGLDLNVVENVEEADFVLAHGTEALGLPSGSVSPRTIDELEKILEKSAAR 187

Query: 185 KIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVV 231
            +PM+VANPDYVTVEA    +MPGTLASK+E+LGGEV+ MGKP K++
Sbjct: 188 GLPMIVANPDYVTVEANVFHIMPGTLASKYEELGGEVKSMGKPHKMI 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500114|ref|XP_003518879.1| PREDICTED: uncharacterized hydrolase yutF-like [Glycine max]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/233 (75%), Positives = 197/233 (84%), Gaps = 2/233 (0%)

Query: 1   MIAKCSVQSND--PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEML 58
           M  KCSV      P  FQ LNGLR +AETRRFK WLLDQFGVLHDGK+PYPGAISTLE +
Sbjct: 1   MNPKCSVPPPQIRPFQFQNLNGLRQLAETRRFKGWLLDQFGVLHDGKEPYPGAISTLENI 60

Query: 59  ATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALG 118
           A TGAKMV+ISNSSRR+S TI+K+K LGFD SLF GAITSGELTHQYL RRDD WFA LG
Sbjct: 61  AKTGAKMVIISNSSRRSSVTIEKVKGLGFDASLFLGAITSGELTHQYLQRRDDPWFATLG 120

Query: 119 RSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKIL 178
           RSCIH TW+ RGAISLEGL L+VV NVEEA+F+LAHGTE +G   G  R M L+D+EKIL
Sbjct: 121 RSCIHFTWNGRGAISLEGLDLRVVANVEEAEFVLAHGTEALGNADGTARSMKLEDMEKIL 180

Query: 179 EICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVV 231
           E+CA+K IPMVVANPDYVTVEAR LRVMPGTLA+K+EKLGGEV+WMGKPD+++
Sbjct: 181 ELCAAKGIPMVVANPDYVTVEARDLRVMPGTLAAKYEKLGGEVKWMGKPDEII 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2142454	306	AT5G10460 "AT5G10460" [Arabido	0.860	0.705	0.754	3.3e-86
TIGR_CMR|SPO_3151	310	SPO_3151 "HAD-superfamily subf	0.852	0.690	0.252	7.7e-13
UNIPROTKB|F1MW60	296	PDXP "Pyridoxal phosphate phos	0.330	0.280	0.363	0.00097
UNIPROTKB|Q3ZBF9	296	PDXP "Pyridoxal phosphate phos	0.330	0.280	0.363	0.00097
UNIPROTKB|J9NUR4	296	PDXP "Uncharacterized protein"	0.318	0.270	0.364	0.00097

TAIR|locus:2142454 AT5G10460 "AT5G10460" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 163/216 (75%), Positives = 186/216 (86%)

Query:    14 LFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73
             L Q +NGL+ I ETR FKAWLLDQ+GVLHDGKKPYPGAISTL+ LAT GAK+V+ISNSSR
Sbjct:     7 LSQPMNGLKDIVETRNFKAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAKIVIISNSSR 66

Query:    74 RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAIS 133
             RASTT++KLK LGFDPS F GAITSGELTHQ L RRDD WFAALGR CIH+TW+DRGAIS
Sbjct:    67 RASTTMEKLKGLGFDPSFFTGAITSGELTHQSLQRRDDPWFAALGRRCIHITWNDRGAIS 126

Query:   134 LEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANP 193
             LEGL L VVENVEEADF+LAHGTE +GLPSG V P ++ +LEKILE  A++ +PM+VANP
Sbjct:   127 LEGLDLNVVENVEEADFVLAHGTEALGLPSGSVSPRTIDELEKILEKSAARGLPMIVANP 186

Query:   194 DYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDK 229
             DYVTVEA    +MPGTLASK+E+LGGEV+ MGKP K
Sbjct:   187 DYVTVEANVFHIMPGTLASKYEELGGEVKSMGKPHK 222

GO:0016787 "hydrolase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TIGR_CMR|SPO_3151 SPO_3151 "HAD-superfamily subfamily IIA hydrolase, TIGR01459" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 173 (66.0 bits), Expect = 7.7e-13, P = 7.7e-13
 Identities = 57/226 (25%), Positives = 101/226 (44%)

Query:     3 AKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTG 62
             A  +V   DP + Q +  L  I+E  R++A  +D +G +H+G   YP A++ L+     G
Sbjct:     9 ALATVSKPDPDMTQIITALAEISE--RYRALFVDLWGCVHNGVTAYPEAVAALQAYRAAG 66

Query:    63 AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCI 122
               +V+++NS +  +    +L         +    TSG+     + R       A+G+   
Sbjct:    67 GIVVLVTNSPKPRAGVATQLSQFKVPQDAYDTIATSGDSARSAMFR------GAVGQKVY 120

Query:   123 HMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICA 182
              M   +R A   E L  K++++  E   +     EG+ +  G   PM+   + +   + A
Sbjct:   121 FMGEWERDAGFFEPL--KLLDSPVEITRVPLQEAEGI-VCCGPFDPMADPAVNRPDFLYA 177

Query:   183 SKK-IPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKP 227
               K + ++ ANPD V           G LA  + ++GGE  + GKP
Sbjct:   178 KTKGMKLLCANPDIVVDRGEIREWCAGALARLYTEMGGESLYFGKP 223

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

UNIPROTKB|F1MW60 PDXP "Pyridoxal phosphate phosphatase" [Bos taurus (taxid:9913)]

 Score = 108 (43.1 bits), Expect = 0.00097, P = 0.00097
 Identities = 32/88 (36%), Positives = 44/88 (50%)

Query:    29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
             R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct:    18 RAQGVLFDCDGVLWNGERAVPGAPELLERLAQAGKATLFVSNNSRRARPELALRFARLGF 77

Query:    88 ----DPSLFAGAITSGELTHQYLLRRDD 111
                    LF+ A+ +  L  Q LL   D
Sbjct:    78 GGLRSEQLFSSALCAARLLRQRLLGPPD 105

GO:0071318 "cellular response to ATP" evidence=IEA

GO:0070938 "contractile ring" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0032465 "regulation of cytokinesis" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0031247 "actin rod assembly" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030836 "positive regulation of actin filament depolymerization" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0007088 "regulation of mitosis" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

UNIPROTKB|Q3ZBF9 PDXP "Pyridoxal phosphate phosphatase" [Bos taurus (taxid:9913)]

 Score = 108 (43.1 bits), Expect = 0.00097, P = 0.00097
 Identities = 32/88 (36%), Positives = 44/88 (50%)

Query:    29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
             R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct:    18 RAQGVLFDCNGVLWNGERAVPGAPELLERLAQAGKATLFVSNNSRRARPELALRFARLGF 77

Query:    88 ----DPSLFAGAITSGELTHQYLLRRDD 111
                    LF+ A+ +  L  Q LL   D
Sbjct:    78 GGLRSEQLFSSALCAARLLRQRLLGPPD 105

GO:0007088 "regulation of mitosis" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0030027 "lamellipodium" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0032154 "cleavage furrow" evidence=ISS

GO:0032587 "ruffle membrane" evidence=ISS

GO:0070938 "contractile ring" evidence=ISS

GO:0032465 "regulation of cytokinesis" evidence=ISS

GO:0030836 "positive regulation of actin filament depolymerization" evidence=ISS

GO:0006470 "protein dephosphorylation" evidence=IDA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0031258 "lamellipodium membrane" evidence=IEA

GO:0033883 "pyridoxal phosphatase activity" evidence=IEA

GO:0004647 "phosphoserine phosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9NUR4 PDXP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 108 (43.1 bits), Expect = 0.00097, P = 0.00097
 Identities = 31/85 (36%), Positives = 44/85 (51%)

Query:    29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
             R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct:    18 RTQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 77

Query:    88 D----PSLFAGAITSGELTHQYLLR 108
                    +F+ A+ +  L  Q LLR
Sbjct:    78 GGLRAEQVFSSALCAARLLRQRLLR 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      251       229   0.00082  113 3  11 22  0.40    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  181 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.03u 0.08s 20.11t   Elapsed:  00:00:03
  Total cpu time:  20.03u 0.08s 20.11t   Elapsed:  00:00:03
  Start:  Fri May 10 15:16:53 2013   End:  Fri May 10 15:16:56 2013

GO:0016791 "phosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_120000092	hypothetical protein (308 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IX.1599.1	hypothetical protein (424 aa)	•								0.652
	eugene3.01370007	SubName- Full=Putative uncharacterized protein; (305 aa)			•						0.465
	gw1.X.1500.1	SubName- Full=Putative uncharacterized protein; (303 aa)			•						0.461
	estExt_fgenesh4_pg.C_LG_VIII0664	phosphoglycolate phosphatase (EC-3.1.3.18) (321 aa)			•						0.435

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
TIGR01459	242	TIGR01459, HAD-SF-IIA-hyp4, HAD-superfamily class	1e-34
COG0647	269	COG0647, NagD, Predicted sugar phosphatases of the	1e-20
pfam13344	101	pfam13344, Hydrolase_6, Haloacid dehalogenase-like	6e-17
TIGR01460	236	TIGR01460, HAD-SF-IIA, Haloacid Dehalogenase Super	1e-12
TIGR01452	279	TIGR01452, PGP_euk, phosphoglycolate/pyridoxal pho	2e-05
cd01427	139	cd01427, HAD_like, Haloacid dehalogenase-like hydr	3e-05
TIGR02253	221	TIGR02253, CTE7, HAD superfamily (subfamily IA) hy	8e-05
PLN02645	311	PLN02645, PLN02645, phosphoglycolate phosphatase	0.002
COG0637	221	COG0637, COG0637, Predicted phosphatase/phosphohex	0.002

>gnl|CDD|130526 TIGR01459, HAD-SF-IIA-hyp4, HAD-superfamily class IIA hydrolase, TIGR01459

 Score =  124 bits (312), Expect = 1e-34
 Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 11/201 (5%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88
            +  +LLD +GV+ DG   YPGA+  L  +   G  +  +SNS R   +    LKSLG +
Sbjct: 7   DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN 66

Query: 89  PSLFAGAITSGELTHQYLLRRDDAWFAALGRSCI-HMTWSDRGAISLEGLGLKVVENVEE 147
             L    I+SGE+  Q +L  +      +    I  +   +   I+L        EN   
Sbjct: 67  ADLPEMIISSGEIAVQMIL--ESKKRFDIRNGIIYLLGHLENDIINLMQCYTTDDENKAN 124

Query: 148 ADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMP 207
           A  I  + +E   L         L + +++     ++KIP + ANPD    +    R   
Sbjct: 125 ASLITIYRSENEKLD--------LDEFDELFAPIVARKIPNICANPDRGINQHGIYRYGA 176

Query: 208 GTLASKFEKLGGEVRWMGKPD 228
           G  A   ++LGG+V + GKP 
Sbjct: 177 GYYAELIKQLGGKVIYSGKPY 197

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily model). Length = 242

>gnl|CDD|223720 COG0647, NagD, Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

 Score = 87.6 bits (218), Expect = 1e-20
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 20/205 (9%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGF 87
           ++  +L D  GVL+ G +  PGA   L+ L   G  ++ ++N+S R       +L SLG 
Sbjct: 7   KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGG 66

Query: 88  DPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHM-TWSDRGAISLEGLGLKVVENVE 146
                   +TSG+ T  YL +         G+    +     +  +   G  L   E   
Sbjct: 67  VDVTPDDIVTSGDATADYLAK------QKPGKKVYVIGEEGLKEELEGAGFELVDEEEPA 120

Query: 147 EADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVM 206
             D ++           G  R ++ + L + L   A    P +  NPD      R LR  
Sbjct: 121 RVDAVVV----------GLDRTLTYEKLAEALLAIA-AGAPFIATNPDLTVPTERGLRPG 169

Query: 207 PGTLASKFEKLGGEVR-WMGKPDKV 230
            G +A+  E+  G     +GKP   
Sbjct: 170 AGAIAALLEQATGREPTVIGKPSPA 194

Length = 269

>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase

 Score = 73.6 bits (182), Expect = 6e-17
 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 33  WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSL 91
           +L D  GVL  G +P PGA   L  L   G  +V ++N+S R+      KL+ LGFD   
Sbjct: 1   FLFDVDGVLWRGGEPIPGAAEALNALRAAGKPVVFVTNNSSRSREQYAKKLRKLGFDVD- 59

Query: 92  FAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLK 140
               ITS      YL  R            + +  S+     LE  G +
Sbjct: 60  EDEVITSATAAADYLKER-------KFGKKVLVIGSEGLREELEEAGFE 101

This family is part of the HAD superfamily. Length = 101

>gnl|CDD|233422 TIGR01460, HAD-SF-IIA, Haloacid Dehalogenase Superfamily Class (subfamily) IIA

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 14/200 (7%)

Query: 34  LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTI-DKLKSLGFDPSLF 92
           L D  GVL  G KP PGA   L  L   G  +V ++N+S R+     +KL SL       
Sbjct: 2   LFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSP 61

Query: 93  AGAITSGELTHQYLLRR-DDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFI 151
              ITSG +T   L +R +      +G              SLEGLG +  +  ++ D +
Sbjct: 62  DQIITSGSVTKDLLRQRFEGEKVYVIG--------VGELRESLEGLGFR-NDFFDDIDHL 112

Query: 152 LAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEAR-ALRVMPGTL 210
                    +        S  +L K   + A   +P + AN D +        R   G +
Sbjct: 113 AIEKIPAAVIVGEPSDF-SYDELAKAAYLLAEGDVPFIAANRDDLVRLGDGRFRPGAGAI 171

Query: 211 ASKFEKLGGEVR-WMGKPDK 229
           A+  ++L G     +GKP  
Sbjct: 172 AAGIKELSGREPTVVGKPSP 191

This model represents one structural subclass of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The classes are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Class I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Class II consists of sequences in which the capping domain is found between the second and third motifs. Class III sequences have no capping domain in iether of these positions. The Class IIA capping domain is predicted by PSI-PRED to consist of a mixed alpha-beta fold with the basic pattern: Helix-Helix-Helix-Sheet-Helix-Loop-Sheet-Helix-Sheet- Helix. Presently, this subfamily encompasses a single equivalog model (TIGR01452) for the eukaryotic phosphoglycolate phosphatase, as well as four hypothetical equivalogs covering closely related sequences (TIGR01456 and TIGR01458 in eukaryotes, TIGR01457 in gram positive bacteria and TIGR01459 in gram negative bacteria). The Escherishia coli NagD gene and the Bacillus subtilus AraL gene are members of this subfamily but are not members of the any of the presently defined equivalogs within it. NagD is part of the NAG operon responsible for N-acetylglucosamine metabolism. The function of this gene is unknown. Genes from several organisms have been annotated as NagD, or NagD-like. However, without data on the presence of other members of this pathway, (such as in the case of Yersinia pestis) these assignments should not be given great weight. The AraL gene is similar: it is part of the L-arabinose operon, but the function is unknown. A gene from Halobacterium has been annotated as AraL, but no other Ara operon genes have been annotated. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant [Unknown function, Enzymes of unknown specificity]. Length = 236

>gnl|CDD|233420 TIGR01452, PGP_euk, phosphoglycolate/pyridoxal phosphate phosphatase family

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGF 87
           R + ++ D  GVL  G++  PGA   L+ LA  G   + ++N+S ++ +    K   LGF
Sbjct: 1   RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGF 60

Query: 88  DPS---LFAGAITSGELTHQ 104
           +     LF+ A+ +  L  Q
Sbjct: 61  NGLAEQLFSSALCAARLLRQ 80

PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In mammals, PGP is found in many tissues, notably in red blood cells where P-glycolate is and important activator of the hydrolysis of 2,3-bisphosphoglycerate, a major modifier of the oxygen affinity of hemoglobin. Pyridoxal phosphate (PLP, Vitamin B6) phosphatase is involved in the degradation of PLP in mammals and is widely distributed in human tissues including erythrocyes. The enzymes described here are members of the Haloacid dehalogenase superfamily of hydrolase enzymes (pfam00702). Unlike the bacterial PGP equivalog (TIGR01449), which is a member of class (subfamily) I, these enzymes are members of class (subfamily) II. These two families have almost certainly arisen from convergent evolution (although these two ancestors may themselves have diverged from a more distant HAD superfamily progenitor). The primary seed sequence for this model comes from Chlamydomonas reinhardtii, a photosynthetic alga. The enzyme has been purified and characterized and these data are fully consistent with the assignment of function as a PGPase involved in photorespiration. The second seed, from Homo sapiens chromosome 22 has been characterized as a pyridoxal phosphatase. Biochemical characterization of partially purified PGP's from various tissues including red blood cells have been performed while one gene for PGP has been localized to chromosome 16p13.3. The sequence used here maps to chromosome 22. There is indeed a related gene on chromosome 16 (and it is expressed, since EST's are found) which shows 46% identity and 59% positives by BLAST2 (E=1e-66). The chromosome 16 gene is not in evidence in nraa but translated from the genomic sequence would score 372.4 (E=7.9e-113) versus This model, well above trusted. The third seed, from C. elegans, is only supported by sequence similarity. This model is limited to eukaryotic species including S. pombe and S. cerevisiae, although several archaea score between the trusted and noise cutoffs. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase d. Length = 279

>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 32  AWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82
           A L D  G L D +         + YPG    L+ L   G K+ + +N SRR    ++ L
Sbjct: 1   AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRRE--VLELL 58

Query: 83  KSLGFDPSLFAGAITSGELTHQYL 106
           + LG D   F   ITS      Y 
Sbjct: 59  EELGLD-DYFDPVITSNGAAIYYP 81

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. Length = 139

>gnl|CDD|162787 TIGR02253, CTE7, HAD superfamily (subfamily IA) hydrolase, TIGR02253

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 9   SNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGK----KPYPGAISTLEMLATTGAK 64
           SN P  F  L  +R + E    K  +       H  K    + YPG   TL  L  +G +
Sbjct: 56  SNYPTHFDYL--IRRLWEEYNPK-LVAAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYR 112

Query: 65  MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101
           + +I++         +KL+ LG     F   ITS E 
Sbjct: 113 LGIITDGLPVKQ--WEKLERLGVRD-FFDAVITSEEE 146

This family of sequences from archaea and metazoans includes the human uncharacterized protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Length = 221

>gnl|CDD|178251 PLN02645, PLN02645, phosphoglycolate phosphatase

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 32  AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFD-- 88
            ++ D  GV+  G K   G   TL+ML + G K+V ++N+S ++ +    K +SLG +  
Sbjct: 30  TFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVT 89

Query: 89  -----PSLFAGA 95
                 S FA A
Sbjct: 90  EEEIFSSSFAAA 101

Length = 311

>gnl|CDD|223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 31  KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90
           +  L +   +  +G KP PG +  LE L   G  + V S+S RRA+  +  L  LG    
Sbjct: 71  ERLLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERV--LARLGLLD- 127

Query: 91  LFAGAITSGELTH 103
            F   +T+ ++  
Sbjct: 128 YFDVIVTADDVAR 140

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	100.0
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	100.0
PRK10444	248	UMP phosphatase; Provisional	100.0
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	100.0
PLN02645	311	phosphoglycolate phosphatase	100.0
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	100.0
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	100.0
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	100.0
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	99.97
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	99.97
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	99.96
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	99.88
KOG1618	389	consensus Predicted phosphatase [General function	99.84
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	99.03
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	98.97
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	98.96
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	98.96
PRK11587	218	putative phosphatase; Provisional	98.89
PRK13288	214	pyrophosphatase PpaX; Provisional	98.87
PHA03398	303	viral phosphatase superfamily protein; Provisional	98.81
PRK14988	224	GMP/IMP nucleotidase; Provisional	98.81
PLN02575	381	haloacid dehalogenase-like hydrolase	98.79
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	98.76
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	98.76
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	98.76
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	98.75
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	98.73
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	98.71
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	98.71
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	98.7
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	98.68
PRK06769	173	hypothetical protein; Validated	98.68
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	98.66
PRK13226	229	phosphoglycolate phosphatase; Provisional	98.62
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	98.61
PRK13225	273	phosphoglycolate phosphatase; Provisional	98.6
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	98.59
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	98.57
PRK13222	226	phosphoglycolate phosphatase; Provisional	98.56
COG0546	220	Gph Predicted phosphatases [General function predi	98.56
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	98.55
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	98.55
PLN02940	382	riboflavin kinase	98.53
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	98.52
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	98.52
PHA02530	300	pseT polynucleotide kinase; Provisional	98.5
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	98.49
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	98.47
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	98.46
PRK09449	224	dUMP phosphatase; Provisional	98.45
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	98.44
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	98.43
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	98.42
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.4
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	98.36
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	98.35
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	98.35
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	98.35
PRK01158	230	phosphoglycolate phosphatase; Provisional	98.35
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	98.34
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	98.33
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	98.32
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	98.29
PRK10563	221	6-phosphogluconate phosphatase; Provisional	98.28
PRK13223	272	phosphoglycolate phosphatase; Provisional	98.28
PRK10513	270	sugar phosphate phosphatase; Provisional	98.27
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	98.24
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	98.22
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	98.22
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.2
PRK10976	266	putative hydrolase; Provisional	98.17
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	98.17
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	98.16
PLN02954	224	phosphoserine phosphatase	98.16
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	98.16
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.15
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	98.12
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.11
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	98.1
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	98.1
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	98.09
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	98.08
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.07
PRK10748	238	flavin mononucleotide phosphatase; Provisional	98.06
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	98.04
PTZ00174	247	phosphomannomutase; Provisional	98.02
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	98.0
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	97.97
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	97.97
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	97.9
PRK11133	322	serB phosphoserine phosphatase; Provisional	97.89
PHA02597	197	30.2 hypothetical protein; Provisional	97.87
PLN02887	580	hydrolase family protein	97.86
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	97.8
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	97.79
PRK13582	205	thrH phosphoserine phosphatase; Provisional	97.78
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	97.74
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	97.71
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	97.7
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	97.69
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	97.69
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	97.69
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	97.68
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	97.67
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	97.62
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	97.6
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	97.59
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	97.52
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	97.52
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	97.51
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	97.49
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	97.48
KOG3085	237	consensus Predicted hydrolase (HAD superfamily) [G	97.44
COG0241	181	HisB Histidinol phosphatase and related phosphatas	97.4
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	97.38
PLN02423	245	phosphomannomutase	97.37
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	97.36
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	97.34
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	97.34
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	97.33
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	97.31
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	97.29
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	97.27
PRK08238	479	hypothetical protein; Validated	97.25
COG2503	274	Predicted secreted acid phosphatase [General funct	97.24
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	97.23
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	97.23
PLN02811	220	hydrolase	97.21
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	97.19
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	97.09
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	97.02
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	97.02
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	97.01
KOG2914	222	consensus Predicted haloacid-halidohydrolase and r	97.01
COG4996	164	Predicted phosphatase [General function prediction	96.97
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	96.77
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	96.73
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	96.68
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	96.68
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	96.63
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	96.36
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	96.31
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	96.3
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	96.25
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	96.22
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	96.2
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	96.13
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	96.12
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	96.09
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	96.05
PLN03017	366	trehalose-phosphatase	96.03
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	96.03
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	95.85
PLN02151	354	trehalose-phosphatase	95.84
COG4087	152	Soluble P-type ATPase [General function prediction	95.83
PLN02382	413	probable sucrose-phosphatase	95.69
PF13242	75	Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OY	95.63
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	95.52
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	95.51
PTZ00445	219	p36-lilke protein; Provisional	95.24
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	95.0
PLN02580	384	trehalose-phosphatase	94.99
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	94.76
KOG1615	227	consensus Phosphoserine phosphatase [Amino acid tr	94.71
PRK11590	211	hypothetical protein; Provisional	94.44
KOG2914	222	consensus Predicted haloacid-halidohydrolase and r	94.42
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	94.3
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	94.25
PRK06769	173	hypothetical protein; Validated	94.17
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	94.14
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	94.12
PRK10671	834	copA copper exporting ATPase; Provisional	93.77
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	93.6
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	93.52
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	93.51
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	93.31
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	93.16
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	93.13
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	92.95
PF06437	408	ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR0	92.86
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	92.83
PLN02811	220	hydrolase	92.75
PRK14988	224	GMP/IMP nucleotidase; Provisional	92.75
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	92.62
PLN02575	381	haloacid dehalogenase-like hydrolase	92.45
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	92.25
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	92.02
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	91.72
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	91.61
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	91.4
KOG2116	738	consensus Protein involved in plasmid maintenance/	91.37
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	90.97
PRK10748	238	flavin mononucleotide phosphatase; Provisional	90.93
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	90.93
KOG3085	237	consensus Predicted hydrolase (HAD superfamily) [G	90.86
PRK11590	211	hypothetical protein; Provisional	90.74
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	90.66
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	90.63
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	90.57
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	90.53
COG4850	373	Uncharacterized conserved protein [Function unknow	90.3
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	90.14
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	90.13
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	90.11
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	89.93
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	89.8
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	89.61
PF06189	264	5-nucleotidase: 5'-nucleotidase; InterPro: IPR0103	89.59
PRK05301	378	pyrroloquinoline quinone biosynthesis protein PqqE	89.51
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	89.47
PF02358	235	Trehalose_PPase: Trehalose-phosphatase; InterPro:	89.1
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	89.09
COG0731	296	Fe-S oxidoreductases [Energy production and conver	88.8
PRK09449	224	dUMP phosphatase; Provisional	88.47
PRK14010	673	potassium-transporting ATPase subunit B; Provision	88.28
COG5083	580	SMP2 Uncharacterized protein involved in plasmid m	88.11
PRK13226	229	phosphoglycolate phosphatase; Provisional	88.11
TIGR02886	106	spore_II_AA anti-sigma F factor antagonist. The an	88.04
PRK01122	679	potassium-transporting ATPase subunit B; Provision	87.94
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	87.68
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	87.63
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	87.41
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	87.39
KOG4549	144	consensus Magnesium-dependent phosphatase [General	86.96
PRK13288	214	pyrophosphatase PpaX; Provisional	86.81
COG4359	220	Uncharacterized conserved protein [Function unknow	86.34
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	86.33
PF04312	138	DUF460: Protein of unknown function (DUF460); Inte	86.2
PRK11587	218	putative phosphatase; Provisional	86.18
PLN02940	382	riboflavin kinase	86.17
PF09587	250	PGA_cap: Bacterial capsule synthesis protein PGA_c	85.97
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	85.62
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	85.08
PF01740	117	STAS: STAS domain; InterPro: IPR002645 The STAS (S	84.29
KOG3189	252	consensus Phosphomannomutase [Lipid transport and	84.15
PRK13223	272	phosphoglycolate phosphatase; Provisional	84.07
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	83.89
TIGR02109	358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	83.79
cd07041	109	STAS_RsbR_RsbS_like Sulphate Transporter and Anti-	83.57
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	82.94
COG1366	117	SpoIIAA Anti-anti-sigma regulatory factor (antagon	82.65
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	82.61
cd07043	99	STAS_anti-anti-sigma_factors Sulphate Transporter	82.58
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	82.44
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	82.27
KOG2961	190	consensus Predicted hydrolase (HAD superfamily) [G	82.25
TIGR03470	318	HpnH hopanoid biosynthesis associated radical SAM	81.81
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	81.74
TIGR02495	191	NrdG2 anaerobic ribonucleoside-triphosphate reduct	81.47
TIGR00377	108	ant_ant_sig anti-anti-sigma factor. This superfami	80.24
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	80.14
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	80.01

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.4e-44  Score=309.59  Aligned_cols=205  Identities=25%  Similarity=0.416  Sum_probs=181.4

Q ss_pred             HHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHh-CCCCCccccceeech
Q 025564           22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKS-LGFDPSLFAGAITSG   99 (251)
Q Consensus        22 ~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~-~Gl~~~~~~~Iits~   99 (251)
                      .++.+  +|++|+||+|||||+|.+++|||.++|++|+++|++++|+|||++ +++.+.++|+. +|++.. .++|+||+
T Consensus         2 ~~~~~--~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~-~~~i~TS~   78 (269)
T COG0647           2 FDVMD--KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVT-PDDIVTSG   78 (269)
T ss_pred             cchhh--hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCC-HHHeecHH
Confidence            45667  999999999999999999999999999999999999999999996 55568999999 666677 49999999


Q ss_pred             hhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCC--ccEEEEecCCCCCCCCCCCccCCHHHHHHH
Q 025564          100 ELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEE--ADFILAHGTEGMGLPSGDVRPMSLQDLEKI  177 (251)
Q Consensus       100 ~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~--~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a  177 (251)
                      ++++.||++...      +.+||++|.+.. ..+++..|++++++.++  +++|++          |.|++++|++++.+
T Consensus        79 ~at~~~l~~~~~------~~kv~viG~~~l-~~~l~~~G~~~~~~~~~~~~d~Vv~----------g~d~~~~~e~l~~a  141 (269)
T COG0647          79 DATADYLAKQKP------GKKVYVIGEEGL-KEELEGAGFELVDEEEPARVDAVVV----------GLDRTLTYEKLAEA  141 (269)
T ss_pred             HHHHHHHHhhCC------CCEEEEECCcch-HHHHHhCCcEEeccCCCCcccEEEE----------ecCCCCCHHHHHHH
Confidence            999999998765      479999885432 25899999988764333  588998          89999999999999


Q ss_pred             HHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCc--eEEEE
Q 025564          178 LEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVI--ILFLI  247 (251)
Q Consensus       178 ~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~--~~~~~  247 (251)
                      +.. +++|++|||||||+.+|.++|++||+|+++++++++ |+++.++|||++.||+.|++.++.+  .+.||
T Consensus       142 ~~~-i~~g~~fI~tNpD~~~p~~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~~~~~~~~mV  213 (269)
T COG0647         142 LLA-IAAGAPFIATNPDLTVPTERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMV  213 (269)
T ss_pred             HHH-HHcCCcEEEeCCCccccCCCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHhCCCcccEEEE
Confidence            985 788999999999999999999999999999999996 8888999999999999999999985  55666

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.2e-40  Score=283.72  Aligned_cols=211  Identities=19%  Similarity=0.259  Sum_probs=184.6

Q ss_pred             CChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCC-Ccccccee
Q 025564           19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFD-PSLFAGAI   96 (251)
Q Consensus        19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~-~~~~~~Ii   96 (251)
                      +..+||++  ++++|+||+|||||.|..++||+.|++++|++.|+.+.|+||||. +++++.++++++|+. ..+ ++|+
T Consensus        13 ~~~~e~l~--~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e-~~i~   89 (306)
T KOG2882|consen   13 EEARELLD--SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKE-ENIF   89 (306)
T ss_pred             HHHHHHHh--hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCc-cccc
Confidence            66889999  999999999999999999999999999999999999999999995 678899999999999 664 8999


Q ss_pred             echhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecC------------------C-CCCccEEEEecCC
Q 025564           97 TSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVE------------------N-VEEADFILAHGTE  157 (251)
Q Consensus        97 ts~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~------------------~-~~~~~~Vvv~~~~  157 (251)
                      +|..+.+.||+++...     +++||++|.... .++|++.|++...                  . ..++.+||+    
T Consensus        90 ssa~~~a~ylk~~~~~-----~k~Vyvig~~gi-~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvv----  159 (306)
T KOG2882|consen   90 SSAYAIADYLKKRKPF-----GKKVYVIGEEGI-REELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVV----  159 (306)
T ss_pred             ChHHHHHHHHHHhCcC-----CCeEEEecchhh-hHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEE----
Confidence            9999999999887632     578999875322 2378888876431                  0 245789999    


Q ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEccCCcccc-ccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHH
Q 025564          158 GMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTV-EARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLC  235 (251)
Q Consensus       158 ~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~n~D~~~~-~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a  235 (251)
                            |+|.+|+|.+|++|++++.++++.|++||.|.+.| .+....||+|+++++++. ++|+|.++|||++.|++++
T Consensus       160 ------g~D~hfsy~KL~kA~~yLqnP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l  233 (306)
T KOG2882|consen  160 ------GYDEHFSYPKLMKALNYLQNPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYL  233 (306)
T ss_pred             ------ecccccCHHHHHHHHHHhCCCCcEEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHH
Confidence                  89999999999999999888899999999999988 444489999999999998 5999999999999999999


Q ss_pred             HHhcCCceEEEEe
Q 025564          236 SLSSSVIILFLIF  248 (251)
Q Consensus       236 ~~~l~~~~~~~~~  248 (251)
                      +++.+++|.=.++
T Consensus       234 ~~~~~i~psRt~m  246 (306)
T KOG2882|consen  234 LEKFNIDPSRTCM  246 (306)
T ss_pred             HHHcCCCcceEEE
Confidence            9999998876555

>PRK10444 UMP phosphatase; Provisional

Probab=100.00  E-value=3.6e-36  Score=261.18  Aligned_cols=193  Identities=20%  Similarity=0.289  Sum_probs=167.9

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHhc
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR  108 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~  108 (251)
                      +++|+||+|||||++.+++||+.++|++|+++|++++|+||++. +.+++.++|+++|++..+ ++|+||+.+++.||++
T Consensus         1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~L~~   79 (248)
T PRK10444          1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFLRR   79 (248)
T ss_pred             CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCH-hhEecHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999999985 567899999999999885 9999999999999988


Q ss_pred             cCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcE
Q 025564          109 RDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM  188 (251)
Q Consensus       109 ~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~l  188 (251)
                      +.       +.++|++|.... ..++++.|+++.+  +++++||+          |+|.+++|+++++|+++ +++|++|
T Consensus        80 ~~-------~~~v~~~g~~~l-~~~l~~~g~~~~~--~~~~~Vvv----------g~~~~~~~~~l~~a~~~-l~~g~~~  138 (248)
T PRK10444         80 QE-------GKKAYVIGEGAL-IHELYKAGFTITD--INPDFVIV----------GETRSYNWDMMHKAAYF-VANGARF  138 (248)
T ss_pred             CC-------CCEEEEEcCHHH-HHHHHHCcCEecC--CCCCEEEE----------eCCCCCCHHHHHHHHHH-HHCCCEE
Confidence            63       467888775322 2477888887654  57889999          78899999999999986 5789999


Q ss_pred             EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564          189 VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI  247 (251)
Q Consensus       189 i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~  247 (251)
                      +++|||..++   |+.|++|+++++++.+ |+++..+|||+|.+|+.+++++++++  .+||
T Consensus       139 i~~n~D~~~~---g~~~~~G~~~~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~I  197 (248)
T PRK10444        139 IATNPDTHGR---GFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIV  197 (248)
T ss_pred             EEECCCCCCC---CCcCcHHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEE
Confidence            9999999654   5789999999999985 88999999999999999999998655  4554

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=100.00  E-value=1.8e-35  Score=257.07  Aligned_cols=197  Identities=18%  Similarity=0.254  Sum_probs=172.9

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhhHHHHHhc
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR  108 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~  108 (251)
                      |++|+||+|||||++.+++|++.++|++|+++|++++|+|||+ |+.+++.++|+++|++... ++|+|++.+++.||++
T Consensus         1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~-~~iit~~~~~~~~l~~   79 (249)
T TIGR01457         1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATL-ETVFTASMATADYMND   79 (249)
T ss_pred             CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEeeHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999987 6777889999999999884 9999999999999998


Q ss_pred             cCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcE
Q 025564          109 RDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM  188 (251)
Q Consensus       109 ~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~l  188 (251)
                      +..      ++++|++|.... ..++++.|+++..  +++++|++          |+|..++|+++.++++. +++|+++
T Consensus        80 ~~~------~~~v~~lg~~~l-~~~l~~~g~~~~~--~~~~~Vvv----------g~~~~~~y~~l~~a~~~-l~~g~~~  139 (249)
T TIGR01457        80 LKL------EKTVYVIGEEGL-KEAIKEAGYVEDK--EKPDYVVV----------GLDRQIDYEKFATATLA-IRKGAHF  139 (249)
T ss_pred             cCC------CCEEEEEcChhH-HHHHHHcCCEecC--CCCCEEEE----------eCCCCCCHHHHHHHHHH-HHCCCeE
Confidence            754      467888775322 2377888886543  57899998          78899999999999986 5789999


Q ss_pred             EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564          189 VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI  247 (251)
Q Consensus       189 i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~  247 (251)
                      +++|+|..+|.+++..+++|+++++++.+ ++++...|||+|.+|+.+++++++++  ++||
T Consensus       140 i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~V  201 (249)
T TIGR01457       140 IGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMV  201 (249)
T ss_pred             EEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEE
Confidence            99999999998888889999999999985 89999999999999999999999865  4554

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>PLN02645 phosphoglycolate phosphatase

Probab=100.00  E-value=2e-34  Score=258.05  Aligned_cols=213  Identities=18%  Similarity=0.207  Sum_probs=176.6

Q ss_pred             ccCChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccce
Q 025564           17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGA   95 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~I   95 (251)
                      ..++++++++  +||+|+||+|||||++.+++||+.++|++|+++|++++|+||++. +.+++.++|+++|++.. +++|
T Consensus        17 ~~~~~~~~~~--~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~-~~~I   93 (311)
T PLN02645         17 TLENADELID--SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVT-EEEI   93 (311)
T ss_pred             CHHHHHHHHH--hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCC-hhhE
Confidence            3458899999  999999999999999999999999999999999999999999984 56778899999999988 5999


Q ss_pred             eechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecC------------------CCCCccEEEEecCC
Q 025564           96 ITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVE------------------NVEEADFILAHGTE  157 (251)
Q Consensus        96 its~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~------------------~~~~~~~Vvv~~~~  157 (251)
                      ++++..+..||++.....    ++++|++|.... ..++++.|++.+.                  ..+++++||+    
T Consensus        94 ~ts~~~~~~~l~~~~~~~----~~~V~viG~~~~-~~~l~~~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~i~aVvv----  164 (311)
T PLN02645         94 FSSSFAAAAYLKSINFPK----DKKVYVIGEEGI-LEELELAGFQYLGGPEDGDKKIELKPGFLMEHDKDVGAVVV----  164 (311)
T ss_pred             eehHHHHHHHHHhhccCC----CCEEEEEcCHHH-HHHHHHCCCEEecCccccccccccccccccccCCCCCEEEE----
Confidence            999999999998754211    356888775322 2366777775421                  1235578998    


Q ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHh-CCCcEEEccCCccccccCc-eeeCchHHHHHHHHh-CCCeEEecCCCHHHHHH
Q 025564          158 GMGLPSGDVRPMSLQDLEKILEICAS-KKIPMVVANPDYVTVEARA-LRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLL  234 (251)
Q Consensus       158 ~~~~~~g~d~~~~~~~l~~a~~~~~~-~g~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~  234 (251)
                            |+|++++|++++.+++++.. +|+++|+||+|..++...+ ..+|.|++.++++.+ ++++.++|||+|.+|+.
T Consensus       165 ------g~d~~~~~~~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~  238 (311)
T PLN02645        165 ------GFDRYINYYKIQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDY  238 (311)
T ss_pred             ------ecCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHH
Confidence                  88999999999999986543 6999999999998865554 678999999999875 88899999999999999


Q ss_pred             HHHhcCCce--EEEE
Q 025564          235 CSLSSSVII--LFLI  247 (251)
Q Consensus       235 a~~~l~~~~--~~~~  247 (251)
                      +++++++++  .+||
T Consensus       239 a~~~~~~~~~~~~~V  253 (311)
T PLN02645        239 LANKFGIEKSQICMV  253 (311)
T ss_pred             HHHHcCCCcccEEEE
Confidence            999998765  5555

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=100.00  E-value=1.4e-32  Score=237.71  Aligned_cols=215  Identities=25%  Similarity=0.377  Sum_probs=173.2

Q ss_pred             hHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC-ccccceeech
Q 025564           21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGAITSG   99 (251)
Q Consensus        21 ~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~-~~~~~Iits~   99 (251)
                      ++++++  +|++|+||+|||||++.+++||+.++|++|+++|++++|+||++++..++.++|+++|++. . |+.|++++
T Consensus         1 ~~~~~~--~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~-~~~Ii~s~   77 (242)
T TIGR01459         1 IFDLIN--DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADL-PEMIISSG   77 (242)
T ss_pred             Chhhhh--cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccc-cceEEccH
Confidence            468899  9999999999999999999999999999999999999999998876656668899999997 7 69999999


Q ss_pred             hhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHH
Q 025564          100 ELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILE  179 (251)
Q Consensus       100 ~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~  179 (251)
                      +++..++.+..... -.-+.+++++|.+..+..+++..+....++..++++||+.+        ..|..++|+.+..+++
T Consensus        78 ~~~~~~l~~~~~~~-~~~~~~~~~vGd~~~d~~~~~~~~~~~~~~~~~~~~vvv~~--------~~~~~~~~~~~~~~l~  148 (242)
T TIGR01459        78 EIAVQMILESKKRF-DIRNGIIYLLGHLENDIINLMQCYTTDDENKANASLITIYR--------SENEKLDLDEFDELFA  148 (242)
T ss_pred             HHHHHHHHhhhhhc-cCCCceEEEeCCcccchhhhcCCCccccCCcccCcEEEEcC--------CCcccCCHHHHHHHHH
Confidence            99888886532100 00135688877644334456565654333335678888742        1345689999999998


Q ss_pred             HHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCc---eEEEE
Q 025564          180 ICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVI---ILFLI  247 (251)
Q Consensus       180 ~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~---~~~~~  247 (251)
                      .+.++|+++|+||+|..++...+..++.|++.++++.+|+++...|||+|.+|+.+++++++.   ...||
T Consensus       149 ~l~~~g~~~i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~v  219 (242)
T TIGR01459       149 PIVARKIPNICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLMV  219 (242)
T ss_pred             HHHhCCCcEEEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEEE
Confidence            877789999999999999987778899999999998888888889999999999999999864   36665

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=100.00  E-value=5.8e-33  Score=245.00  Aligned_cols=202  Identities=20%  Similarity=0.230  Sum_probs=170.4

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHh
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~  107 (251)
                      +|++|+||+|||||++.+++||+.++|++|+++|++++++|||+. ++.++..+|+++|+.... ++|+||+.+++.||+
T Consensus         1 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~l~   79 (279)
T TIGR01452         1 RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLA-EQLFSSALCAARLLR   79 (279)
T ss_pred             CccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEecHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999984 566788899999999885 999999999999999


Q ss_pred             ccCchhhhhcCCeEEEeccCCcccccccCCCceecCC------------------CCCccEEEEecCCCCCCCCCCCccC
Q 025564          108 RRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVEN------------------VEEADFILAHGTEGMGLPSGDVRPM  169 (251)
Q Consensus       108 ~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~------------------~~~~~~Vvv~~~~~~~~~~g~d~~~  169 (251)
                      ++..+     +.++|++|.... ..++++.|+..+..                  .+++++||+          |+|.++
T Consensus        80 ~~~~~-----~~~v~~iG~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvv----------~~d~~~  143 (279)
T TIGR01452        80 QPPDA-----PKAVYVIGEEGL-RAELDAAGIRLAGDPSAGDGAAPRGSGAFMKLEENVGAVVV----------GYDEHF  143 (279)
T ss_pred             hhCcC-----CCEEEEEcCHHH-HHHHHHCCCEEecCcccccccchhhcccccccCCCCCEEEE----------ecCCCC
Confidence            85322     467998875321 23777778765421                  246888998          789999


Q ss_pred             CHHHHHHHHHHHHhCCCcEEEccCCccccccCc-eeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EE
Q 025564          170 SLQDLEKILEICASKKIPMVVANPDYVTVEARA-LRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LF  245 (251)
Q Consensus       170 ~~~~l~~a~~~~~~~g~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~  245 (251)
                      +|+.++.+++++..+|+.+++||+|..++...+ ..++.|++.++++.+ |+++..+|||+|.+|+.+++++++++  .+
T Consensus       144 ~y~~i~~~l~~L~~~g~~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l  223 (279)
T TIGR01452       144 SYAKLREACAHLREPGCLFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL  223 (279)
T ss_pred             CHHHHHHHHHHHhcCCCEEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence            999999999987667999999999998886655 478999999998874 88999999999999999999998755  55


Q ss_pred             EE
Q 025564          246 LI  247 (251)
Q Consensus       246 ~~  247 (251)
                      ||
T Consensus       224 mI  225 (279)
T TIGR01452       224 MV  225 (279)
T ss_pred             EE
Confidence            54

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=100.00  E-value=1.4e-31  Score=230.88  Aligned_cols=192  Identities=29%  Similarity=0.412  Sum_probs=162.0

Q ss_pred             EEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHh-CCCCCccccceeechhhHHHHHhccC
Q 025564           33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGELTHQYLLRRD  110 (251)
Q Consensus        33 ~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~-~Gl~~~~~~~Iits~~~~~~~L~~~~  110 (251)
                      |+||+|||||++.+++||+.++|+.|+++|+++.|+|||+ ++.+++.++|.+ +|++.. .+++++|+.+++.||++++
T Consensus         1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~-~~~iits~~~~~~~l~~~~   79 (236)
T TIGR01460         1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVS-PDQIITSGSVTKDLLRQRF   79 (236)
T ss_pred             CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCC-HHHeeeHHHHHHHHHHHhC
Confidence            5899999999999999999999999999999999999998 677788899998 899988 4999999999999999765


Q ss_pred             chhhhhcCCeEEEeccCCcccccccCCCcee--cCC------CCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHH
Q 025564          111 DAWFAALGRSCIHMTWSDRGAISLEGLGLKV--VEN------VEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICA  182 (251)
Q Consensus       111 ~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~--~~~------~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~  182 (251)
                      .      ++++|++|.+.. ..++++.|++.  ..+      ...+++|++          |.|.+++|.+++.+.++ +
T Consensus        80 ~------~~~v~v~G~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~~~~vv~----------~~~~~~~~~~~~~a~~~-l  141 (236)
T TIGR01460        80 E------GEKVYVIGVGEL-RESLEGLGFRNDFFDDIDHLAIEKIPAAVIV----------GEPSDFSYDELAKAAYL-L  141 (236)
T ss_pred             C------CCEEEEECCHHH-HHHHHHcCCcCcccCcccccccCCCCeEEEE----------CCCCCcCHHHHHHHHHH-H
Confidence            3      467888875322 24778888751  211      123567777          78899999999999986 5


Q ss_pred             hCC-CcEEEccCCccccccCc-eeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          183 SKK-IPMVVANPDYVTVEARA-LRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       183 ~~g-~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ++| ++|++||+|..++.+.| ..++.|++.++++.+ ++++...|||+|.+|+.+++++++++
T Consensus       142 ~~~~~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~  205 (236)
T TIGR01460       142 AEGDVPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARP  205 (236)
T ss_pred             hCCCCeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCC
Confidence            566 99999999987777676 889999999999985 88888899999999999999998653

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=99.97  E-value=5.4e-30  Score=223.66  Aligned_cols=192  Identities=19%  Similarity=0.267  Sum_probs=158.7

Q ss_pred             ccEEEEeccccccCCCc----cCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           30 FKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~----~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      +++|+||+|||||++.+    ++||+.++|++|+++|++++|+|||+. +.+++.++|+.+|++..+ ++|+||+++++.
T Consensus         1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~-~~i~ts~~~~~~   79 (257)
T TIGR01458         1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISE-DEVFTPAPAARQ   79 (257)
T ss_pred             CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCH-HHeEcHHHHHHH
Confidence            47899999999999988    999999999999999999999999985 556788999999999884 999999999999


Q ss_pred             HHhccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCC-ccCCHHHHHHHHHHHHh
Q 025564          105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDV-RPMSLQDLEKILEICAS  183 (251)
Q Consensus       105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d-~~~~~~~l~~a~~~~~~  183 (251)
                      ||++.+        .++|+++.+.. ..++.  |+.    .+++++|++          |+| .+++|+++..+++++..
T Consensus        80 ~l~~~~--------~~~~~~g~~~~-~~~~~--~~~----~~~~~~Vv~----------g~~~~~~~y~~l~~a~~~L~~  134 (257)
T TIGR01458        80 LLEEKQ--------LRPMLLVDDRV-LPDFD--GID----TSDPNCVVM----------GLAPEHFSYQILNQAFRLLLD  134 (257)
T ss_pred             HHHhcC--------CCeEEEECccH-HHHhc--cCC----CCCCCEEEE----------ecccCccCHHHHHHHHHHHHc
Confidence            998753        35777664321 23443  321    246788888          665 48999999999997554


Q ss_pred             CCCc-EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564          184 KKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI  247 (251)
Q Consensus       184 ~g~~-li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~  247 (251)
                      .+.+ ++++|+|..++...+..++.|++.++++.+ ++++..+|||+|.+|+.+++++++++  .+||
T Consensus       135 ~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~v  202 (257)
T TIGR01458       135 GAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMI  202 (257)
T ss_pred             CCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEE
Confidence            4544 678899999998877789999999999975 88899999999999999999998766  4444

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=99.97  E-value=1.2e-30  Score=234.53  Aligned_cols=188  Identities=22%  Similarity=0.273  Sum_probs=151.6

Q ss_pred             EEEEeccccccCCCccCccHHHHHHHHHHC----CCeEEEEeCCCC-CchhHHHHh-HhCCCCCccccceeechhhHHHH
Q 025564           32 AWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSSR-RASTTIDKL-KSLGFDPSLFAGAITSGELTHQY  105 (251)
Q Consensus        32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~----G~~v~ivTN~s~-~~~~~~~~L-~~~Gl~~~~~~~Iits~~~~~~~  105 (251)
                      +|+||+|||||++..++||+.++++.|+++    |+++.|+||++. +.+++.++| +++|++..+ ++|+++...+..|
T Consensus         2 ~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~-~~i~~s~~~~~~l   80 (321)
T TIGR01456         2 GFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSP-LQVIQSHSPYKSL   80 (321)
T ss_pred             EEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCH-HHHHhhhHHHHHH
Confidence            699999999999999999999999999998    999999999984 556677777 889999885 8999999988777


Q ss_pred             HhccCchhhhhcCCeEEEeccCCcccccccCCCceec---C-------C-----------------------CCCccEEE
Q 025564          106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVV---E-------N-----------------------VEEADFIL  152 (251)
Q Consensus       106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~---~-------~-----------------------~~~~~~Vv  152 (251)
                      +++. .       .++|++|.+.. ..++++.|+..+   +       +                       ..++++||
T Consensus        81 l~~~-~-------~~v~viG~~~~-~~~l~~~G~~~vv~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVv  151 (321)
T TIGR01456        81 VNKY-E-------KRILAVGTGSV-RGVAEGYGFQNVVHQDEIVRYFRDIDPFSGMSDEQVREYSRDIPDLTTKRFDAVL  151 (321)
T ss_pred             HHHc-C-------CceEEEeChHH-HHHHHHcCCcccccHHHHHhcCCCCCcccccCHHHhhcccccccccCCCceeEEE
Confidence            7543 2       35777765432 235666666521   0       0                       13678899


Q ss_pred             EecCCCCCCCCCCCccCCHHHHHHHHHHHHhCC----------CcEEEccCCccccccCc-eeeCchHHHHHHHH----h
Q 025564          153 AHGTEGMGLPSGDVRPMSLQDLEKILEICASKK----------IPMVVANPDYVTVEARA-LRVMPGTLASKFEK----L  217 (251)
Q Consensus       153 v~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g----------~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~----~  217 (251)
                      +          |.|+..+|.+++.+++++...|          ++|++||+|++||.+.| +++|+|+|++++++    +
T Consensus       152 v----------~~d~~~~~~~l~~~~~~l~~~g~~g~~~~~~~~~~i~~n~D~~~p~~~g~~~~g~Ga~~~~l~~~~~~~  221 (321)
T TIGR01456       152 V----------FNDPVDWAADIQIISDALNSEGLPGEKSGKPSIPIYFSNQDLLWANEYKLNRFGQGAFRLLLERIYLEL  221 (321)
T ss_pred             E----------ecCchHHhhhHHHHHHHHhCCCCcCCCCCCCCCCEEEeCCCEeeccCCCCceechHHHHHHHHHHHHHh
Confidence            8          6678788889999998754422          79999999999999888 59999999999986    3


Q ss_pred             -CCCe--EEecCCCHHHHHHHHHhc
Q 025564          218 -GGEV--RWMGKPDKVVQLLCSLSS  239 (251)
Q Consensus       218 -g~~~--~~~GKP~~~~~~~a~~~l  239 (251)
                       |+++  +++|||+|.+|+.|++++
T Consensus       222 tg~~~~~~~~GKP~~~~~~~a~~~l  246 (321)
T TIGR01456       222 NGKPLQYYTLGKPTKLTYDFAEDVL  246 (321)
T ss_pred             cCCCcceEEcCCCChHHHHHHHHHH
Confidence             5644  788999999999999888

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=99.96  E-value=7.5e-29  Score=204.00  Aligned_cols=198  Identities=23%  Similarity=0.289  Sum_probs=166.8

Q ss_pred             cCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHH
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      +.++++++|+-||||....++||+.|++++|+.++.++-|+||.+. +.+.++++|+++||+..+ ++|+||..+++.|+
T Consensus         5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~e-eei~tsl~aa~~~~   83 (262)
T KOG3040|consen    5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSE-EEIFTSLPAARQYL   83 (262)
T ss_pred             cccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccH-HHhcCccHHHHHHH
Confidence            4789999999999999999999999999999999999999999986 567899999999999995 99999999999999


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhC-C
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASK-K  185 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~-g  185 (251)
                      .++..       ++.+++.  ++.+.++..  +    +..+|++||++.         -...|+|+.+++|++.+++. .
T Consensus        84 ~~~~l-------rP~l~v~--d~a~~dF~g--i----dTs~pn~VVigl---------ape~F~y~~ln~AFrvL~e~~k  139 (262)
T KOG3040|consen   84 EENQL-------RPYLIVD--DDALEDFDG--I----DTSDPNCVVIGL---------APEGFSYQRLNRAFRVLLEMKK  139 (262)
T ss_pred             HhcCC-------CceEEEc--ccchhhCCC--c----cCCCCCeEEEec---------CcccccHHHHHHHHHHHHcCCC
Confidence            87654       3333322  222223332  2    235889999943         25689999999999977665 4


Q ss_pred             CcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEEeec
Q 025564          186 IPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLIFLD  250 (251)
Q Consensus       186 ~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~~~~  250 (251)
                      .++|+.|..+++....|+-+|+|++++++|.+ |+++.++|||+|.+|+.|++.+|++|  .+||-=|
T Consensus       140 ~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD  207 (262)
T KOG3040|consen  140 PLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDD  207 (262)
T ss_pred             CeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccc
Confidence            78999999999999999999999999999985 99999999999999999999998876  5676433

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=99.88  E-value=3.8e-23  Score=155.80  Aligned_cols=99  Identities=30%  Similarity=0.465  Sum_probs=82.1

Q ss_pred             EEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHhccCc
Q 025564           33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDD  111 (251)
Q Consensus        33 ~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~  111 (251)
                      |+||+|||||+|.+++|||.|+|++|+++|++++|+|||++ +++++.++|+++|++..+ ++|+||+++++.||+++..
T Consensus         1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~   79 (101)
T PF13344_consen    1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDE-DEIITSGMAAAEYLKEHKG   79 (101)
T ss_dssp             EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--G-GGEEEHHHHHHHHHHHHTT
T ss_pred             CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc-CEEEChHHHHHHHHHhcCC
Confidence            79999999999999999999999999999999999999985 568899999999999985 9999999999999998644


Q ss_pred             hhhhhcCCeEEEeccCCcccccccCCCc
Q 025564          112 AWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus       112 ~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                            ++++|++|.+.. ..++++.|+
T Consensus        80 ------~~~v~vlG~~~l-~~~l~~~G~  100 (101)
T PF13344_consen   80 ------GKKVYVLGSDGL-REELREAGF  100 (101)
T ss_dssp             ------SSEEEEES-HHH-HHHHHHTTE
T ss_pred             ------CCEEEEEcCHHH-HHHHHHcCC
Confidence                  589999885422 236777776

...

>KOG1618 consensus Predicted phosphatase [General function prediction only]

Probab=99.84  E-value=7.8e-20  Score=159.21  Aligned_cols=197  Identities=22%  Similarity=0.293  Sum_probs=140.1

Q ss_pred             cEEEEeccccccCCCccCccHHHHHHHHHHC----CCeEEEEeCCCCCc-hhHHHHhH-hCCCCCccccceeechhhHHH
Q 025564           31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSSRRA-STTIDKLK-SLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~----G~~v~ivTN~s~~~-~~~~~~L~-~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      -+|+||+||||.+|.+++||+.++|+.|.+.    .+|++|+||..... ..-++.|. .+|++..+ ++|+.|+...+.
T Consensus        36 fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~-dqviqSHsP~r~  114 (389)
T KOG1618|consen   36 FGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSA-DQVIQSHSPFRL  114 (389)
T ss_pred             eeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCH-HHHHhhcChHHH
Confidence            3899999999999999999999999999998    99999999987432 23345564 48999996 999999999988


Q ss_pred             HHhccCchhhhhcCCeEEEeccCCcccccccCCCceec-----------------------------CC---CCCccEEE
Q 025564          105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVV-----------------------------EN---VEEADFIL  152 (251)
Q Consensus       105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~-----------------------------~~---~~~~~~Vv  152 (251)
                      +...++        +.+++.|.++. ....+..|++-+                             .+   ....|+|+
T Consensus       115 l~~~~~--------k~vLv~G~~~v-r~vAegyGFk~Vvt~D~l~k~f~~ldP~t~~~~~~k~~~~~R~~~~~r~ieAv~  185 (389)
T KOG1618|consen  115 LVEYHY--------KRVLVVGQGSV-REVAEGYGFKNVVTVDELAKYFPLLDPFTDLSRELKTTKLARDRELFRRIEAVL  185 (389)
T ss_pred             Hhhhhh--------ceEEEecCCcH-HHHhhccCccceeeHHHHHHhCCCcccccchhHhhhcccchhccccccceeEEE
Confidence            774333        34555554322 112333333210                             00   23566766


Q ss_pred             E-ecCCCCCCCCCCCccCCHHHHHHHHHHHHhC--------------CCcEEEccCCccccccCc-eeeCchHHHHHHHH
Q 025564          153 A-HGTEGMGLPSGDVRPMSLQDLEKILEICASK--------------KIPMVVANPDYVTVEARA-LRVMPGTLASKFEK  216 (251)
Q Consensus       153 v-~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~--------------g~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~  216 (251)
                      + .++.+|++           ++|-.+..+..+              .+|++++|.|+.|+.+.. +++|.|+|.-++|.
T Consensus       186 ~~~dPv~W~~-----------dlQli~D~l~snG~~gt~~~a~~~~Phipiy~sN~DLlW~~e~~lpR~G~GaF~l~les  254 (389)
T KOG1618|consen  186 LLGDPVRWET-----------DLQLIMDVLLSNGSPGTGRLATGPYPHIPIYASNMDLLWMAEYKLPRFGHGAFRLCLES  254 (389)
T ss_pred             EecCchhhhh-----------hHHHHHHHHhcCCCCCcccccCCCCCCCceEEecccccccccCCCccccchHHHHHHHH
Confidence            5 45577762           344444432212              248999999999999988 79999998887764


Q ss_pred             ----hCCC---eEEecCCCHHHHHHHHHhc-----------CCceEEEEe
Q 025564          217 ----LGGE---VRWMGKPDKVVQLLCSLSS-----------SVIILFLIF  248 (251)
Q Consensus       217 ----~g~~---~~~~GKP~~~~~~~a~~~l-----------~~~~~~~~~  248 (251)
                          ..++   ...+|||++..|++|.+.+           -++.+|||-
T Consensus       255 iy~kltGk~L~~~t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvG  304 (389)
T KOG1618|consen  255 IYQKLTGKPLRYTTLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVG  304 (389)
T ss_pred             HHHHhcCCcccccccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeec
Confidence                3443   3699999999999997654           367788873

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=99.03  E-value=5.7e-10  Score=95.35  Aligned_cols=102  Identities=23%  Similarity=0.365  Sum_probs=75.3

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhhcCCeEEEec
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMT  125 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g  125 (251)
                      .++||+.++|+.|+++|++++++||+++..  +...|+.+|+..+ |+.+++++++...      +|     -..+|+  
T Consensus        86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~~--~~~~L~~~gl~~~-f~~~v~~~dv~~~------KP-----~Pd~yL--  149 (221)
T COG0637          86 KPIPGVVELLEQLKARGIPLAVASSSPRRA--AERVLARLGLLDY-FDVIVTADDVARG------KP-----APDIYL--  149 (221)
T ss_pred             CCCccHHHHHHHHHhcCCcEEEecCChHHH--HHHHHHHccChhh-cchhccHHHHhcC------CC-----CCHHHH--
Confidence            679999999999999999999999987543  5678889999999 7999999987764      22     122332  


Q ss_pred             cCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcEEEccC
Q 025564          126 WSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANP  193 (251)
Q Consensus       126 ~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~li~~n~  193 (251)
                            ...+.+|.      ...++||+.++                  ...++..+..|+..|+-+.
T Consensus       150 ------~Aa~~Lgv------~P~~CvviEDs------------------~~Gi~Aa~aAGm~vv~v~~  187 (221)
T COG0637         150 ------LAAERLGV------DPEECVVVEDS------------------PAGIQAAKAAGMRVVGVPA  187 (221)
T ss_pred             ------HHHHHcCC------ChHHeEEEecc------------------hhHHHHHHHCCCEEEEecC
Confidence                  23455564      44578998654                  6667666778998777543

>TIGR01684 viral_ppase viral phosphatase

Probab=98.97  E-value=8.1e-10  Score=97.17  Aligned_cols=77  Identities=21%  Similarity=0.337  Sum_probs=65.9

Q ss_pred             HhcccCccEEEEeccccccCCCcc----CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564           24 IAETRRFKAWLLDQFGVLHDGKKP----YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (251)
Q Consensus        24 ~~~~~~~~~~l~D~DGvL~~g~~~----~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~   99 (251)
                      ..+  .++.++||+||||.+..+.    -||+.|+|++|+++|++++++||+++..  +...|+++|+..+ |+.|++++
T Consensus       122 ~~~--~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~--v~~~L~~lGLd~Y-FdvIIs~G  196 (301)
T TIGR01684       122 VFE--PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH--VVESMRKVKLDRY-FDIIISGG  196 (301)
T ss_pred             ccc--cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHHcCCCcc-cCEEEECC
Confidence            445  5789999999999998875    3999999999999999999999988543  5578999999998 79999999


Q ss_pred             hhHHHH
Q 025564          100 ELTHQY  105 (251)
Q Consensus       100 ~~~~~~  105 (251)
                      +....+
T Consensus       197 dv~~~k  202 (301)
T TIGR01684       197 HKAEEY  202 (301)
T ss_pred             ccccCC
Confidence            886543

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=98.96  E-value=2.7e-09  Score=83.38  Aligned_cols=58  Identities=31%  Similarity=0.466  Sum_probs=49.0

Q ss_pred             cEEEEeccccccCC---------CccCccHHHHHHHHHHCCCeEEEEeCCCC-C-----chhHHHHhHhCCCC
Q 025564           31 KAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSR-R-----ASTTIDKLKSLGFD   88 (251)
Q Consensus        31 ~~~l~D~DGvL~~g---------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~-----~~~~~~~L~~~Gl~   88 (251)
                      |+++||+||||+++         ..++||+.++|++|+++|++++++||++. .     .+.+...++++|+.
T Consensus         1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~   73 (132)
T TIGR01662         1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP   73 (132)
T ss_pred             CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence            58999999999974         47899999999999999999999999872 1     23466778889987

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=98.96  E-value=1.1e-09  Score=85.73  Aligned_cols=67  Identities=16%  Similarity=0.152  Sum_probs=50.5

Q ss_pred             cEEEEeccccccCCC-------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCC-------CCCc
Q 025564           31 KAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG-------FDPS   90 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~-------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~G-------l~~~   90 (251)
                      +.++||+|||||.+.             .++||+.++|+.|+++|++++++||++... .....++.+|       +...
T Consensus         1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~-~~~~~l~~~~~~~~i~~l~~~   79 (128)
T TIGR01681         1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPH-VAYELLKIFEDFGIIFPLAEY   79 (128)
T ss_pred             CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHH-HHHHHHHhccccccchhhHhh
Confidence            578999999999983             168999999999999999999999984321 2334566677       5555


Q ss_pred             cccceeech
Q 025564           91 LFAGAITSG   99 (251)
Q Consensus        91 ~~~~Iits~   99 (251)
                       |+.++++.
T Consensus        80 -f~~~~~~~   87 (128)
T TIGR01681        80 -FDPLTIGY   87 (128)
T ss_pred             -hhhhhhcC
Confidence             56655553

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>PRK11587 putative phosphatase; Provisional

Probab=98.89  E-value=7.5e-09  Score=87.85  Aligned_cols=51  Identities=22%  Similarity=0.309  Sum_probs=39.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .++||+.++|+.|+++|++++++||+++..  ....++..|+..  ++.++++++
T Consensus        83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~--~~~~l~~~~l~~--~~~i~~~~~  133 (218)
T PRK11587         83 TALPGAIALLNHLNKLGIPWAIVTSGSVPV--ASARHKAAGLPA--PEVFVTAER  133 (218)
T ss_pred             eeCcCHHHHHHHHHHcCCcEEEEcCCCchH--HHHHHHhcCCCC--ccEEEEHHH
Confidence            458999999999999999999999987532  345677788853  466776654

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=98.87  E-value=6e-09  Score=88.03  Aligned_cols=53  Identities=28%  Similarity=0.357  Sum_probs=45.1

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|++|+++|++++++||+.+.  .+...|+.+|+..+ |+.++++.+.
T Consensus        82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~--~~~~~l~~~gl~~~-f~~i~~~~~~  134 (214)
T PRK13288         82 TEYETVYETLKTLKKQGYKLGIVTTKMRD--TVEMGLKLTGLDEF-FDVVITLDDV  134 (214)
T ss_pred             ccCcCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCChhc-eeEEEecCcC
Confidence            46899999999999999999999998743  36678899999988 7889887654

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=98.81  E-value=7.7e-09  Score=91.11  Aligned_cols=74  Identities=22%  Similarity=0.293  Sum_probs=64.6

Q ss_pred             CccEEEEeccccccCCCccC----ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           29 RFKAWLLDQFGVLHDGKKPY----PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~----pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      -.+.++||+||||....+.+    |++.++|++|+++|++++++||+++..  +...|+++|+... |+.|++++.....
T Consensus       127 ~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~--v~~~Le~lgL~~y-FDvII~~g~i~~k  203 (303)
T PHA03398        127 IPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREH--VVHSLKETKLEGY-FDIIICGGRKAGE  203 (303)
T ss_pred             eccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHH--HHHHHHHcCCCcc-ccEEEECCCcccc
Confidence            46799999999999987754    999999999999999999999987543  5678999999988 7889999988877


Q ss_pred             H
Q 025564          105 Y  105 (251)
Q Consensus       105 ~  105 (251)
                      +
T Consensus       204 ~  204 (303)
T PHA03398        204 Y  204 (303)
T ss_pred             c
Confidence            6

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=98.81  E-value=6.6e-09  Score=88.87  Aligned_cols=53  Identities=17%  Similarity=0.298  Sum_probs=44.7

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      ++||+.++|+.|+++|++++++||+++..  +...++++|+... |+.++++++..
T Consensus        94 ~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~--~~~~l~~~~l~~~-fd~iv~s~~~~  146 (224)
T PRK14988         94 LREDTVPFLEALKASGKRRILLTNAHPHN--LAVKLEHTGLDAH-LDLLLSTHTFG  146 (224)
T ss_pred             cCCCHHHHHHHHHhCCCeEEEEeCcCHHH--HHHHHHHCCcHHH-CCEEEEeeeCC
Confidence            57999999999999999999999987533  5567888999888 79999887653

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=98.79  E-value=8.9e-09  Score=94.37  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=46.6

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++|+.|+++|++++++||+++.  .+...|+++|+..+ |+.|++++++.
T Consensus       216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~--~~~~~L~~lgL~~y-Fd~Iv~sddv~  269 (381)
T PLN02575        216 RLRTGSQEFVNVLMNYKIPMALVSTRPRK--TLENAIGSIGIRGF-FSVIVAAEDVY  269 (381)
T ss_pred             CcCcCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCCHHH-ceEEEecCcCC
Confidence            46899999999999999999999998853  35678899999988 79999998753

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=98.76  E-value=2.7e-08  Score=81.62  Aligned_cols=98  Identities=16%  Similarity=0.139  Sum_probs=65.4

Q ss_pred             HHhcccCccEEEEeccccccCC--CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           23 HIAETRRFKAWLLDQFGVLHDG--KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        23 ~~~~~~~~~~~l~D~DGvL~~g--~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      +++....++++++|+||||+..  ..++||+.++|++|+++|++++++||++.. ......++.+|+... +...-....
T Consensus        18 ~~~~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~-~~~~~~~~~~gl~~~-~~~~KP~p~   95 (170)
T TIGR01668        18 DLLKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAGE-QRAKAVEKALGIPVL-PHAVKPPGC   95 (170)
T ss_pred             HHHHHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCchH-HHHHHHHHHcCCEEE-cCCCCCChH
Confidence            4444457899999999999954  468999999999999999999999998731 112234466777643 222333444


Q ss_pred             hHHHHHhccCchhhhhcCCeEEEeccC
Q 025564          101 LTHQYLLRRDDAWFAALGRSCIHMTWS  127 (251)
Q Consensus       101 ~~~~~L~~~~~~~~~~~g~~~~~~g~~  127 (251)
                      .....+++.+.+     ...++++|..
T Consensus        96 ~~~~~l~~~~~~-----~~~~l~IGDs  117 (170)
T TIGR01668        96 AFRRAHPEMGLT-----SEQVAVVGDR  117 (170)
T ss_pred             HHHHHHHHcCCC-----HHHEEEECCc
Confidence            445555554432     1456666643

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=98.76  E-value=1.7e-08  Score=88.34  Aligned_cols=54  Identities=17%  Similarity=0.304  Sum_probs=45.9

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++|+.|+++|++++++||+++.  .+...|+++|+..+ |+.|++++++.
T Consensus       109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~--~~~~~l~~~gl~~~-Fd~ii~~~d~~  162 (260)
T PLN03243        109 RLRPGSREFVQALKKHEIPIAVASTRPRR--YLERAIEAVGMEGF-FSVVLAAEDVY  162 (260)
T ss_pred             ccCCCHHHHHHHHHHCCCEEEEEeCcCHH--HHHHHHHHcCCHhh-CcEEEecccCC
Confidence            36899999999999999999999998753  35577889999988 79999988653

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=98.76  E-value=1.3e-08  Score=77.94  Aligned_cols=69  Identities=35%  Similarity=0.508  Sum_probs=57.6

Q ss_pred             EEEEeccccccCCC---------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           32 AWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        32 ~~l~D~DGvL~~g~---------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+||||+...         .++|++.++|++|+++|++++++||+.+  ..+...++.+|+... ++.++++....
T Consensus         1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~--~~~~~~~~~~~~~~~-~~~i~~~~~~~   77 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSR--REVLELLEELGLDDY-FDPVITSNGAA   77 (139)
T ss_pred             CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchH--HHHHHHHHHcCCchh-hhheeccchhh
Confidence            37999999999988         7899999999999999999999999873  336677888898766 57777777554


Q ss_pred             H
Q 025564          103 H  103 (251)
Q Consensus       103 ~  103 (251)
                      .
T Consensus        78 ~   78 (139)
T cd01427          78 I   78 (139)
T ss_pred             h
Confidence            4

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=98.75  E-value=3.4e-08  Score=83.93  Aligned_cols=53  Identities=17%  Similarity=0.223  Sum_probs=44.5

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ..++||+.++|+.|+++|++++++||+++.  .+...++++|+... |+.++++++
T Consensus        91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~  143 (222)
T PRK10826         91 RPLLPGVREALALCKAQGLKIGLASASPLH--MLEAVLTMFDLRDY-FDALASAEK  143 (222)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCcHH--HHHHHHHhCcchhc-ccEEEEccc
Confidence            357899999999999999999999998753  25567888999988 788888765

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=98.73  E-value=2.9e-08  Score=81.20  Aligned_cols=69  Identities=22%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             cCccEEEEeccccccCCCc-------------cCccHHHHHHHHHHCCCeEEEEeCCCCCc----------hhHHHHhHh
Q 025564           28 RRFKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSRRA----------STTIDKLKS   84 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-------------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~----------~~~~~~L~~   84 (251)
                      |+.+.++||+||||+....             ++||+.++|++|+++|++++++||++...          ..+...|++
T Consensus        11 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~   90 (166)
T TIGR01664        11 PQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEK   90 (166)
T ss_pred             CcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHH
Confidence            4678999999999997532             46999999999999999999999987421          124566788


Q ss_pred             CCCCCccccceeech
Q 025564           85 LGFDPSLFAGAITSG   99 (251)
Q Consensus        85 ~Gl~~~~~~~Iits~   99 (251)
                      +|+..   ..+++++
T Consensus        91 ~gl~~---~~ii~~~  102 (166)
T TIGR01664        91 LKVPI---QVLAATH  102 (166)
T ss_pred             cCCCE---EEEEecC
Confidence            99853   3455554

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=98.71  E-value=2.2e-08  Score=82.50  Aligned_cols=68  Identities=16%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             ccEEEEeccccccCC---------------------------CccCccHHHHHHHHHHCCCeEEEEeCC-CCCchhHHHH
Q 025564           30 FKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNS-SRRASTTIDK   81 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g---------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~-s~~~~~~~~~   81 (251)
                      .+.++||+|+|+|+.                           .+++||+.++|+.|+++|++++++||+ ...  .....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~--~~~~~   79 (174)
T TIGR01685         2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE--WAYEI   79 (174)
T ss_pred             CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH--HHHHH
Confidence            478999999999972                           257899999999999999999999998 433  24567


Q ss_pred             hHhCCCC---------Cccccceeechh
Q 025564           82 LKSLGFD---------PSLFAGAITSGE  100 (251)
Q Consensus        82 L~~~Gl~---------~~~~~~Iits~~  100 (251)
                      |+.+|+.         .. |+.++++..
T Consensus        80 L~~~~l~~~~~~~~~~~~-Fd~iv~~~~  106 (174)
T TIGR01685        80 LGTFEITYAGKTVPMHSL-FDDRIEIYK  106 (174)
T ss_pred             HHhCCcCCCCCcccHHHh-ceeeeeccC
Confidence            7889987         77 688888765

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=98.71  E-value=2.8e-08  Score=86.26  Aligned_cols=54  Identities=22%  Similarity=0.330  Sum_probs=46.1

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++|++|+++|++++|+||+++.  .+...|+++|+..+ |+.+++++++.
T Consensus       108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~--~~~~~l~~~gl~~~-Fd~iv~~~~~~  161 (248)
T PLN02770        108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRE--NAELMISLLGLSDF-FQAVIIGSECE  161 (248)
T ss_pred             CcCccHHHHHHHHHHcCCeEEEEeCCCHH--HHHHHHHHcCChhh-CcEEEecCcCC
Confidence            35789999999999999999999998853  35678899999988 79999998764

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=98.70  E-value=3.1e-08  Score=79.96  Aligned_cols=100  Identities=21%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             ccEEEEeccccccCCCc-------------cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccccee
Q 025564           30 FKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~-------------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Ii   96 (251)
                      ++.++||+||||.++..             ..++  .+|++|+++|++++++||+++..  ....++++|+... |+...
T Consensus         1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~--~~~~l~~~gi~~~-~~~~~   75 (154)
T TIGR01670         1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKL--VEDRCKTLGITHL-YQGQS   75 (154)
T ss_pred             CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHH--HHHHHHHcCCCEE-Eeccc
Confidence            57899999999998522             1222  37999999999999999987543  4577889999876 45544


Q ss_pred             echhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564           97 TSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus        97 ts~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      ...+....++.+.+.+     ..+++.+|.+......++..|+
T Consensus        76 ~k~~~~~~~~~~~~~~-----~~~~~~vGDs~~D~~~~~~ag~  113 (154)
T TIGR01670        76 NKLIAFSDILEKLALA-----PENVAYIGDDLIDWPVMEKVGL  113 (154)
T ss_pred             chHHHHHHHHHHcCCC-----HHHEEEECCCHHHHHHHHHCCC
Confidence            4445555555544432     1356666654332233444444

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=98.68  E-value=5.2e-08  Score=77.88  Aligned_cols=58  Identities=31%  Similarity=0.504  Sum_probs=47.9

Q ss_pred             cEEEEeccccccCCCc-----------cCccHHHHHHHHHHCCCeEEEEeCCCCCc-------------hhHHHHhHhCC
Q 025564           31 KAWLLDQFGVLHDGKK-----------PYPGAISTLEMLATTGAKMVVISNSSRRA-------------STTIDKLKSLG   86 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~~-----------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~-------------~~~~~~L~~~G   86 (251)
                      ++++||+||||..+..           ++||+.++|+.|+++|++++++||+++..             +.+...|+++|
T Consensus         1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG   80 (147)
T ss_pred             CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence            4799999999998774           69999999999999999999999987410             23445677888


Q ss_pred             CC
Q 025564           87 FD   88 (251)
Q Consensus        87 l~   88 (251)
                      +.
T Consensus        81 l~   82 (147)
T TIGR01656        81 VA   82 (147)
T ss_pred             Cc
Confidence            86

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PRK06769 hypothetical protein; Validated

Probab=98.68  E-value=4.4e-08  Score=80.56  Aligned_cols=62  Identities=21%  Similarity=0.360  Sum_probs=49.0

Q ss_pred             CccEEEEeccccccC--------CCccCccHHHHHHHHHHCCCeEEEEeCCCCC-----c-hhHHHHhHhCCCCCc
Q 025564           29 RFKAWLLDQFGVLHD--------GKKPYPGAISTLEMLATTGAKMVVISNSSRR-----A-STTIDKLKSLGFDPS   90 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~--------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-----~-~~~~~~L~~~Gl~~~   90 (251)
                      .|+++++|.||||-.        ...++||+.++|++|+++|++++++||++..     . ..+...++.+|++..
T Consensus         3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~   78 (173)
T PRK06769          3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDI   78 (173)
T ss_pred             CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEE
Confidence            799999999999932        2357999999999999999999999998631     1 124456778888654

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=98.66  E-value=3.2e-08  Score=81.22  Aligned_cols=105  Identities=18%  Similarity=0.151  Sum_probs=70.8

Q ss_pred             CccEEEEeccccccCCCccCccH-----------HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceee
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGA-----------ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa-----------~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iit   97 (251)
                      .+++++||+||||.+|.-.+..-           ...++.|+++|++++++||++...  ....++++|+... |+.+-.
T Consensus         6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~--~~~~l~~lgi~~~-f~~~kp   82 (169)
T TIGR02726         6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGA--VRHRAEELKIKRF-HEGIKK   82 (169)
T ss_pred             cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHH--HHHHHHHCCCcEE-EecCCC
Confidence            68999999999999986444222           237899999999999999987543  5678899999876 565544


Q ss_pred             chhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCcee
Q 025564           98 SGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKV  141 (251)
Q Consensus        98 s~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~  141 (251)
                      ..+.....+++.+..     ...++.+|.+......++..|+.+
T Consensus        83 kp~~~~~~~~~l~~~-----~~ev~~iGD~~nDi~~~~~ag~~~  121 (169)
T TIGR02726        83 KTEPYAQMLEEMNIS-----DAEVCYVGDDLVDLSMMKRVGLAV  121 (169)
T ss_pred             CHHHHHHHHHHcCcC-----HHHEEEECCCHHHHHHHHHCCCeE
Confidence            445555555555432     135666675433333455555543

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=98.62  E-value=8.3e-08  Score=82.22  Aligned_cols=53  Identities=21%  Similarity=0.269  Sum_probs=42.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|++|+++|++++++||+++.  .....++++|+... |+.++++.+.
T Consensus        95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~--~~~~~l~~~~l~~~-f~~i~~~~~~  147 (229)
T PRK13226         95 QLFDGVEGMLQRLECAGCVWGIVTNKPEY--LARLILPQLGWEQR-CAVLIGGDTL  147 (229)
T ss_pred             eeCCCHHHHHHHHHHCCCeEEEECCCCHH--HHHHHHHHcCchhc-ccEEEecCcC
Confidence            45899999999999999999999998753  24467888999887 6777776643

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=98.61  E-value=2e-07  Score=76.87  Aligned_cols=45  Identities=36%  Similarity=0.562  Sum_probs=39.7

Q ss_pred             CccEEEEeccccccCCC----------ccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           29 RFKAWLLDQFGVLHDGK----------KPYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~----------~~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      .+|+++||.||||.-..          .++||+.++|++|+++|++++++||+++
T Consensus         2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~   56 (181)
T PRK08942          2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSG   56 (181)
T ss_pred             CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57999999999996432          5799999999999999999999999863

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=98.60  E-value=1.1e-07  Score=83.83  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=43.4

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      +++||+.++|+.|+++|++++++||+++.  .+...|+++|+..+ |+.++++..
T Consensus       142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~--~~~~~L~~~gl~~~-F~~vi~~~~  193 (273)
T PRK13225        142 QLFPGVADLLAQLRSRSLCLGILSSNSRQ--NIEAFLQRQGLRSL-FSVVQAGTP  193 (273)
T ss_pred             CcCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCChhh-eEEEEecCC
Confidence            45899999999999999999999998753  35577899999887 687776654

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=98.59  E-value=1e-07  Score=79.87  Aligned_cols=56  Identities=25%  Similarity=0.363  Sum_probs=46.9

Q ss_pred             CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ....++||+.++|++|+++|++++++||+++..  +...++++|+... |+.++++++.
T Consensus        72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~--~~~~l~~~~l~~~-f~~i~~~~~~  127 (205)
T TIGR01454        72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPR--ARSLLEALGLLPL-FDHVIGSDEV  127 (205)
T ss_pred             cccccCCCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHHHcCChhh-eeeEEecCcC
Confidence            346789999999999999999999999987533  5577899999887 6888887653

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=98.57  E-value=2.1e-07  Score=80.40  Aligned_cols=69  Identities=12%  Similarity=0.060  Sum_probs=52.1

Q ss_pred             EEEEeccccccCCCc-----------------------------------cCccHHHHHHHHHHCCCeEEEEeCCCCC-c
Q 025564           32 AWLLDQFGVLHDGKK-----------------------------------PYPGAISTLEMLATTGAKMVVISNSSRR-A   75 (251)
Q Consensus        32 ~~l~D~DGvL~~g~~-----------------------------------~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~   75 (251)
                      +|+||+||||.+...                                   +.+++.++|++|+++|++++|+||+... .
T Consensus        65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~  144 (237)
T TIGR01672        65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKT  144 (237)
T ss_pred             EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcC
Confidence            999999999987433                                   1233999999999999999999998532 3


Q ss_pred             hh-HHHHhHhCCCCCccccceeechhh
Q 025564           76 ST-TIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        76 ~~-~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      +. ....++++|++.. |+.+++++..
T Consensus       145 ~~~a~~ll~~lGi~~~-f~~i~~~d~~  170 (237)
T TIGR01672       145 DTVSKTLAKNFHIPAM-NPVIFAGDKP  170 (237)
T ss_pred             HHHHHHHHHHhCCchh-eeEEECCCCC
Confidence            33 3445567999987 5777776653

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=98.56  E-value=2e-07  Score=78.96  Aligned_cols=52  Identities=27%  Similarity=0.429  Sum_probs=42.6

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .++||+.++|+.|+++|++++++||+...  .....++++|+... |+.+++++.
T Consensus        93 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~  144 (226)
T PRK13222         93 RLYPGVKETLAALKAAGYPLAVVTNKPTP--FVAPLLEALGIADY-FSVVIGGDS  144 (226)
T ss_pred             ccCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCCccC-ccEEEcCCC
Confidence            47899999999999999999999998743  34577888999877 688777654

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=98.56  E-value=1.7e-07  Score=79.88  Aligned_cols=50  Identities=26%  Similarity=0.413  Sum_probs=43.2

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeec
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS   98 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits   98 (251)
                      .++||+.++|+.|+++|++++|+||+++..  ....|+++|+..+ |+.+++.
T Consensus        89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~--~~~~l~~~gl~~~-F~~i~g~  138 (220)
T COG0546          89 RLFPGVKELLAALKSAGYKLGIVTNKPERE--LDILLKALGLADY-FDVIVGG  138 (220)
T ss_pred             ccCCCHHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHhCCccc-cceEEcC
Confidence            479999999999999999999999988543  5577888999998 7888883

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=98.55  E-value=2.3e-07  Score=76.26  Aligned_cols=43  Identities=30%  Similarity=0.390  Sum_probs=38.4

Q ss_pred             cEEEEeccccccCC---------CccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           31 KAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        31 ~~~l~D~DGvL~~g---------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      ++++||.||||..+         ..++||+.++|++|+++|++++++||++.
T Consensus         2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~   53 (176)
T TIGR00213         2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSG   53 (176)
T ss_pred             CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence            68999999999943         24689999999999999999999999984

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=98.55  E-value=1.3e-07  Score=79.88  Aligned_cols=55  Identities=31%  Similarity=0.423  Sum_probs=45.9

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      ..++||+.++|++|+++|++++++||+++..  ....++++|+... |+.++++++..
T Consensus        93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~--~~~~l~~~~l~~~-f~~i~~~~~~~  147 (221)
T TIGR02253        93 LRVYPGVRDTLMELRESGYRLGIITDGLPVK--QWEKLERLGVRDF-FDAVITSEEEG  147 (221)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEeCCchHH--HHHHHHhCChHHh-ccEEEEeccCC
Confidence            3678999999999999999999999987432  4577899999988 78899887644

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PLN02940 riboflavin kinase

Probab=98.53  E-value=1.8e-07  Score=86.29  Aligned_cols=54  Identities=30%  Similarity=0.446  Sum_probs=44.4

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH-hCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK-SLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~-~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++|++|+++|++++++||+++..  +...|+ .+|+... |+.+++++++.
T Consensus        93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~--~~~~l~~~~gl~~~-Fd~ii~~d~v~  147 (382)
T PLN02940         93 KALPGANRLIKHLKSHGVPMALASNSPRAN--IEAKISCHQGWKES-FSVIVGGDEVE  147 (382)
T ss_pred             CCCcCHHHHHHHHHHCCCcEEEEeCCcHHH--HHHHHHhccChHhh-CCEEEehhhcC
Confidence            468999999999999999999999987533  445676 6899888 79999988653

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=98.52  E-value=2.5e-07  Score=75.83  Aligned_cols=53  Identities=25%  Similarity=0.337  Sum_probs=44.2

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ...++||+.++|+.|+++|++++++||+    ......|+++|+... |+.++++++.
T Consensus        86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~----~~~~~~l~~~~l~~~-f~~v~~~~~~  138 (185)
T TIGR02009        86 GAEVLPGIENFLKRLKKKGIAVGLGSSS----KNADRILAKLGLTDY-FDAIVDADEV  138 (185)
T ss_pred             CCCCCcCHHHHHHHHHHcCCeEEEEeCc----hhHHHHHHHcChHHH-CCEeeehhhC
Confidence            3578999999999999999999999997    225577889999888 6888887643

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=98.52  E-value=2.1e-07  Score=78.74  Aligned_cols=54  Identities=19%  Similarity=0.370  Sum_probs=45.8

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC--Cccccceeechhh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD--PSLFAGAITSGEL  101 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~--~~~~~~Iits~~~  101 (251)
                      .+++||+.++|+.|+++|++++++||+++..  +...|+++|+.  .. |+.++++++.
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~--~~~~l~~~~l~~~~~-f~~i~~~~~~  141 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT--AERLLEKLGWTVGDD-VDAVVCPSDV  141 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCchHH--HHHHHHHhhhhhhcc-CCEEEcCCcC
Confidence            3689999999999999999999999988533  55788889998  66 6889898764

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.50  E-value=2.6e-07  Score=82.00  Aligned_cols=77  Identities=21%  Similarity=0.260  Sum_probs=59.1

Q ss_pred             ccEEEEeccccccC-------------CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC-ccccce
Q 025564           30 FKAWLLDQFGVLHD-------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGA   95 (251)
Q Consensus        30 ~~~~l~D~DGvL~~-------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~-~~~~~I   95 (251)
                      .+.+++|+||||..             ...++||+.++|+.|+++|++++++||++...  ....++.+|+.. + |+.+
T Consensus       158 ~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~--~~~~l~~l~~~~~~-f~~i  234 (300)
T PHA02530        158 PKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC--EEDTVEWLRQTDIW-FDDL  234 (300)
T ss_pred             CCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh--HHHHHHHHHHcCCc-hhhh
Confidence            57899999999997             45789999999999999999999999988533  334556666664 4 5777


Q ss_pred             eechhhHHHHHhccC
Q 025564           96 ITSGELTHQYLLRRD  110 (251)
Q Consensus        96 its~~~~~~~L~~~~  110 (251)
                      +... ....|++...
T Consensus       235 ~~~~-~~~~~~~~~~  248 (300)
T PHA02530        235 IGRP-PDMHFQREQG  248 (300)
T ss_pred             hCCc-chhhhcccCC
Confidence            6666 4555776543

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=98.49  E-value=3.2e-07  Score=75.61  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=39.4

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++|| .++|+.|++. ++++++||+++..  +...|+++|+..+ |+.|++++++
T Consensus        88 ~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~--~~~~l~~~~l~~~-fd~i~~~~~~  138 (188)
T PRK10725         88 EPLPL-IEVVKAWHGR-RPMAVGTGSESAI--AEALLAHLGLRRY-FDAVVAADDV  138 (188)
T ss_pred             CCccH-HHHHHHHHhC-CCEEEEcCCchHH--HHHHHHhCCcHhH-ceEEEehhhc
Confidence            34554 4778888765 8999999987533  5578999999988 7999998865

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=98.47  E-value=5.4e-07  Score=76.17  Aligned_cols=66  Identities=23%  Similarity=0.195  Sum_probs=54.6

Q ss_pred             hHHHhcccCccEEEEeccccccC-------------------------------------------------------CC
Q 025564           21 LRHIAETRRFKAWLLDQFGVLHD-------------------------------------------------------GK   45 (251)
Q Consensus        21 ~~~~~~~~~~~~~l~D~DGvL~~-------------------------------------------------------g~   45 (251)
                      +++++.  .+++++||+||||++                                                       ..
T Consensus         7 ~~~~~~--~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (219)
T TIGR00338         7 LSPLLR--SKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENL   84 (219)
T ss_pred             chhhhc--cCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcC
Confidence            677788  899999999999997                                                       12


Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .++||+.++|+.|+++|++++++||+...  .....++++|+...
T Consensus        85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~--~~~~~l~~~~i~~~  127 (219)
T TIGR00338        85 PLTEGAEELVKTLKEKGYKVAVISGGFDL--FAEHVKDKLGLDAA  127 (219)
T ss_pred             CcCCCHHHHHHHHHHCCCEEEEECCCcHH--HHHHHHHHcCCCce
Confidence            57899999999999999999999998742  24466777888765

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=98.46  E-value=2.3e-07  Score=77.01  Aligned_cols=109  Identities=18%  Similarity=0.190  Sum_probs=67.2

Q ss_pred             hHHHhcccCccEEEEeccccccCC-------Cc-cCccHH---HHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           21 LRHIAETRRFKAWLLDQFGVLHDG-------KK-PYPGAI---STLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        21 ~~~~~~~~~~~~~l~D~DGvL~~g-------~~-~~pGa~---e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      +.+...  +++.|+||+||||.++       .+ ..+-..   ..++.|+++|++++|+||++..  .....++++|+..
T Consensus        14 ~~~~~~--~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~--~v~~~l~~lgl~~   89 (183)
T PRK09484         14 VMAKAE--NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSK--LVEDRMTTLGITH   89 (183)
T ss_pred             HHHHhh--CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcH--HHHHHHHHcCCce
Confidence            334455  7999999999999986       32 222222   5789999999999999998643  3556788899876


Q ss_pred             ccccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564           90 SLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus        90 ~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      . |...-........++++.+..     ...++.+|.+......++..|+
T Consensus        90 ~-f~g~~~k~~~l~~~~~~~gl~-----~~ev~~VGDs~~D~~~a~~aG~  133 (183)
T PRK09484         90 L-YQGQSNKLIAFSDLLEKLAIA-----PEQVAYIGDDLIDWPVMEKVGL  133 (183)
T ss_pred             e-ecCCCcHHHHHHHHHHHhCCC-----HHHEEEECCCHHHHHHHHHCCC
Confidence            5 442222223334444444332     1346666654333334555555

>PRK09449 dUMP phosphatase; Provisional

Probab=98.45  E-value=2.7e-07  Score=78.32  Aligned_cols=53  Identities=26%  Similarity=0.376  Sum_probs=43.6

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++|++|+ +|++++++||+++.  .....|+++|+... |+.++++++..
T Consensus        95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~--~~~~~l~~~~l~~~-fd~v~~~~~~~  147 (224)
T PRK09449         95 TPLPGAVELLNALR-GKVKMGIITNGFTE--LQQVRLERTGLRDY-FDLLVISEQVG  147 (224)
T ss_pred             ccCccHHHHHHHHH-hCCeEEEEeCCcHH--HHHHHHHhCChHHH-cCEEEEECccC
Confidence            46899999999999 68999999998743  34567899999988 79999887654

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=98.44  E-value=3.6e-07  Score=79.99  Aligned_cols=54  Identities=15%  Similarity=0.196  Sum_probs=41.0

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|+.|+++|++++|+||+++.  .+...|+.+|+....++.|++++++
T Consensus       101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~--~~~~~l~~~~l~~~~~d~i~~~~~~  154 (267)
T PRK13478        101 TPIPGVLEVIAALRARGIKIGSTTGYTRE--MMDVVVPLAAAQGYRPDHVVTTDDV  154 (267)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEcCCcHH--HHHHHHHHHhhcCCCceEEEcCCcC
Confidence            35789999999999999999999998753  2446677777765423677777654

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=98.43  E-value=6e-07  Score=73.09  Aligned_cols=64  Identities=23%  Similarity=0.359  Sum_probs=49.4

Q ss_pred             cEEEEeccccccCCC------------ccCccHHHHHHHHHHCCCeEEEEeCCCC---C----------chhHHHHhHhC
Q 025564           31 KAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR---R----------ASTTIDKLKSL   85 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~---~----------~~~~~~~L~~~   85 (251)
                      ++++||.||||+...            .++||+.++|++|+++|++++++||++.   .          ...+.+.|+++
T Consensus         2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~   81 (161)
T TIGR01261         2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ   81 (161)
T ss_pred             CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC
Confidence            689999999999832            4789999999999999999999999741   0          11244567888


Q ss_pred             CCCCccccceee
Q 025564           86 GFDPSLFAGAIT   97 (251)
Q Consensus        86 Gl~~~~~~~Iit   97 (251)
                      |+.   |+.++.
T Consensus        82 gl~---fd~ii~   90 (161)
T TIGR01261        82 GII---FDDVLI   90 (161)
T ss_pred             CCc---eeEEEE
Confidence            986   455543

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=98.42  E-value=4.8e-07  Score=85.37  Aligned_cols=53  Identities=9%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      +++||+.++|++|+++|++++++||+++..  ....|+++|+..+ |+.+++++++
T Consensus       330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~--~~~~l~~~~l~~~-f~~i~~~d~v  382 (459)
T PRK06698        330 ALYPNVKEIFTYIKENNCSIYIASNGLTEY--LRAIVSYYDLDQW-VTETFSIEQI  382 (459)
T ss_pred             CcCCCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHHHCCcHhh-cceeEecCCC
Confidence            458999999999999999999999987533  5678899999988 7899888765

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.40  E-value=6.9e-07  Score=78.49  Aligned_cols=60  Identities=20%  Similarity=0.178  Sum_probs=50.7

Q ss_pred             cCccEEEEeccccccC-CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           28 RRFKAWLLDQFGVLHD-GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~-g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      |.++.+++|+||||.+ +....+++.++|++|+++|++++++||.+.  ..+...++++|+..
T Consensus         2 ~~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~--~~~~~~~~~l~l~~   62 (273)
T PRK00192          2 MMKLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTA--AEVEVLRKELGLED   62 (273)
T ss_pred             CcceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHcCCCC
Confidence            4689999999999998 556789999999999999999999998764  33556778888764

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=98.36  E-value=1.4e-06  Score=76.44  Aligned_cols=71  Identities=27%  Similarity=0.347  Sum_probs=56.5

Q ss_pred             CccEEEEeccccccC---------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHH
Q 025564           29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTID   80 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~---------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~   80 (251)
                      +..+|+||+|+|+.+                           ...++||+.++|+.|+++|++++|+||++. ..+...+
T Consensus        74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~  153 (266)
T TIGR01533        74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLK  153 (266)
T ss_pred             CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHH
Confidence            556999999999963                           125689999999999999999999999885 3445668


Q ss_pred             HhHhCCCCCccccceeech
Q 025564           81 KLKSLGFDPSLFAGAITSG   99 (251)
Q Consensus        81 ~L~~~Gl~~~~~~~Iits~   99 (251)
                      .|+++|++...++.+++..
T Consensus       154 ~Lkk~Gi~~~~~d~lllr~  172 (266)
T TIGR01533       154 NLKRFGFPQADEEHLLLKK  172 (266)
T ss_pred             HHHHcCcCCCCcceEEeCC
Confidence            8999999864236676654

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>TIGR01686 FkbH FkbH-like domain

Probab=98.35  E-value=8.2e-07  Score=79.97  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=55.1

Q ss_pred             CccEEEEeccccccCCC------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh----CCCCCccc
Q 025564           29 RFKAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS----LGFDPSLF   92 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~----~Gl~~~~~   92 (251)
                      .+|++++|+|+|||.|.            .++||+.++|+.|+++|++++++|||...  .....|++    +|+..+ |
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~--~a~~~l~~~~~~~~~~~~-f   78 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDED--DAKKVFERRKDFILQAED-F   78 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHH--HHHHHHHhCccccCcHHH-e
Confidence            36899999999999874            46799999999999999999999999753  35567787    788776 5


Q ss_pred             cceeech
Q 025564           93 AGAITSG   99 (251)
Q Consensus        93 ~~Iits~   99 (251)
                      ..+..+-
T Consensus        79 ~~~~~~~   85 (320)
T TIGR01686        79 DARSINW   85 (320)
T ss_pred             eEEEEec
Confidence            6655543

The C-terminal portion of this domain is unique to this family (by BLAST).

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=98.35  E-value=2.6e-06  Score=68.87  Aligned_cols=86  Identities=22%  Similarity=0.223  Sum_probs=63.6

Q ss_pred             HHhcccCccEEEEecccccc--CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           23 HIAETRRFKAWLLDQFGVLH--DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        23 ~~~~~~~~~~~l~D~DGvL~--~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      +.+....++++++|+|-||.  +....-|.+.+.++.++++|.++.++|||+.++  +....+++|++-. +..--....
T Consensus        21 ~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R--V~~~~~~l~v~fi-~~A~KP~~~   97 (175)
T COG2179          21 DILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESR--VARAAEKLGVPFI-YRAKKPFGR   97 (175)
T ss_pred             HHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH--HHhhhhhcCCcee-ecccCccHH
Confidence            44444689999999999995  666778999999999999999999999988544  5556677888743 233334445


Q ss_pred             hHHHHHhccCc
Q 025564          101 LTHQYLLRRDD  111 (251)
Q Consensus       101 ~~~~~L~~~~~  111 (251)
                      .....|++.+.
T Consensus        98 ~fr~Al~~m~l  108 (175)
T COG2179          98 AFRRALKEMNL  108 (175)
T ss_pred             HHHHHHHHcCC
Confidence            55566665544

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=98.35  E-value=1.9e-06  Score=67.33  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=36.5

Q ss_pred             cEEEEeccccccCCC-------ccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           31 KAWLLDQFGVLHDGK-------KPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~-------~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      ++|+||+||||.+..       .+.+++.++|++|+++|+.++++|..+
T Consensus         2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~   50 (126)
T TIGR01689         2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRN   50 (126)
T ss_pred             CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            689999999999743       256799999999999999999999765

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=98.35  E-value=1.2e-06  Score=74.62  Aligned_cols=59  Identities=15%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             cCccEEEEeccccccCCCcc-CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~-~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |.++.+++|+||||.+..+. -|...++|++|+++|++++++|+.+..  .+...++.+|++
T Consensus         1 m~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~--~~~~~~~~l~~~   60 (230)
T PRK01158          1 MKIKAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVLC--FARAAAKLIGTS   60 (230)
T ss_pred             CceeEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCchH--HHHHHHHHhCCC
Confidence            46899999999999987764 479999999999999999999986632  344455667775

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=98.34  E-value=1.7e-06  Score=71.77  Aligned_cols=44  Identities=16%  Similarity=0.014  Sum_probs=35.4

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      ..++||+.++|+.|+++|++++|+||+.+.  .+...++++|+...
T Consensus        79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~--~~~~~l~~~g~~~~  122 (201)
T TIGR01491        79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMC--LAKKVAEKLNPDYV  122 (201)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCcHH--HHHHHHHHhCCCeE
Confidence            356899999999999999999999998743  24466778888754

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=98.33  E-value=1.2e-06  Score=74.98  Aligned_cols=56  Identities=25%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             EEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      .++||+||||++.....+++.++|++|+++|++++++|+.+.  .++...++++|+..
T Consensus         1 li~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~--~~~~~~~~~lg~~~   56 (225)
T TIGR02461         1 VIFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTR--AEQEYYREELGVEP   56 (225)
T ss_pred             CEEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCCC
Confidence            378999999999878889999999999999999999997663  34666778888753

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=98.32  E-value=2.4e-06  Score=73.80  Aligned_cols=67  Identities=15%  Similarity=0.091  Sum_probs=50.6

Q ss_pred             EEEEeccccccCCC-----------------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCCC-c
Q 025564           32 AWLLDQFGVLHDGK-----------------------------------KPYPGAISTLEMLATTGAKMVVISNSSRR-A   75 (251)
Q Consensus        32 ~~l~D~DGvL~~g~-----------------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~   75 (251)
                      +|+||+|||+.+..                                   .++||+.++|++|+++|++++++||.+.. .
T Consensus        65 av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~  144 (237)
T PRK11009         65 AVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKT  144 (237)
T ss_pred             EEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCccc
Confidence            99999999999621                                   25677999999999999999999998632 3


Q ss_pred             hhHHHHhH-hCCC--CCccccceeech
Q 025564           76 STTIDKLK-SLGF--DPSLFAGAITSG   99 (251)
Q Consensus        76 ~~~~~~L~-~~Gl--~~~~~~~Iits~   99 (251)
                      +...+.|. .+|+  ... |..+++++
T Consensus       145 ~~t~~~Llk~~gip~~~~-f~vil~gd  170 (237)
T PRK11009        145 ETVSKTLADDFHIPADNM-NPVIFAGD  170 (237)
T ss_pred             HHHHHHHHHHcCCCcccc-eeEEEcCC
Confidence            33445554 5999  555 56666655

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=98.29  E-value=1.9e-06  Score=75.16  Aligned_cols=59  Identities=20%  Similarity=0.319  Sum_probs=48.3

Q ss_pred             cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |.++.+++|+||||++..+ .-|...++|++|+++|++++++|..+.  ..+...++.+|+.
T Consensus         1 M~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~--~~~~~~~~~l~~~   60 (272)
T PRK10530          1 MTYRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHH--VAIHPFYQALALD   60 (272)
T ss_pred             CCccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCCh--HHHHHHHHhcCCC
Confidence            5689999999999998765 668999999999999999999997663  2344556667765

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=98.28  E-value=1.7e-06  Score=73.31  Aligned_cols=49  Identities=24%  Similarity=0.306  Sum_probs=37.5

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccc-ceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA-GAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~-~Iits~~  100 (251)
                      .++||+.++|+.|   +++++++||+++.  .+...|+++|+... |+ .++++.+
T Consensus        88 ~~~~gv~~~L~~L---~~~~~ivTn~~~~--~~~~~l~~~~l~~~-F~~~v~~~~~  137 (221)
T PRK10563         88 EPIAGANALLESI---TVPMCVVSNGPVS--KMQHSLGKTGMLHY-FPDKLFSGYD  137 (221)
T ss_pred             CcCCCHHHHHHHc---CCCEEEEeCCcHH--HHHHHHHhcChHHh-CcceEeeHHh
Confidence            5678888888887   5999999998743  35578899999887 65 4666544

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=98.28  E-value=2e-06  Score=75.80  Aligned_cols=52  Identities=27%  Similarity=0.385  Sum_probs=42.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .++||+.++|+.|+++|++++++||++..  .+...|+++|+... |+.++++++
T Consensus       101 ~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~--~~~~~l~~~~i~~~-f~~i~~~d~  152 (272)
T PRK13223        101 VVYPGVRDTLKWLKKQGVEMALITNKPER--FVAPLLDQMKIGRY-FRWIIGGDT  152 (272)
T ss_pred             ccCCCHHHHHHHHHHCCCeEEEEECCcHH--HHHHHHHHcCcHhh-CeEEEecCC
Confidence            36899999999999999999999998743  35567888999887 688877764

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=98.27  E-value=2.3e-06  Score=74.71  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=48.0

Q ss_pred             cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |.++.+++|+||||++... +-|...++|++|+++|++++++|..+..  .+...++.+|++
T Consensus         1 m~~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~--~~~~~~~~l~~~   60 (270)
T PRK10513          1 MAIKLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPYA--GVHRYLKELHME   60 (270)
T ss_pred             CceEEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCChH--HHHHHHHHhCCC
Confidence            5789999999999998765 4578999999999999999999986642  344556667764

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=98.24  E-value=2.5e-06  Score=68.30  Aligned_cols=69  Identities=20%  Similarity=0.091  Sum_probs=53.9

Q ss_pred             cEEEEeccccccCCC---------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564           31 KAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK   83 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~---------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~   83 (251)
                      ..+++|+||||....                           .++||+.++|+.|+ ++++++++||+++..  ....|+
T Consensus         3 ~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~--~~~il~   79 (148)
T smart00577        3 KTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY--ADPVLD   79 (148)
T ss_pred             cEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH--HHHHHH
Confidence            578999999998752                           34899999999998 579999999988543  345678


Q ss_pred             hCCCCCccccceeechhhH
Q 025564           84 SLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        84 ~~Gl~~~~~~~Iits~~~~  102 (251)
                      ++|+....|+.|+++++..
T Consensus        80 ~l~~~~~~f~~i~~~~d~~   98 (148)
T smart00577       80 LLDPKKYFGYRRLFRDECV   98 (148)
T ss_pred             HhCcCCCEeeeEEECcccc
Confidence            8888654247788877654

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=98.22  E-value=2.8e-06  Score=71.79  Aligned_cols=57  Identities=14%  Similarity=0.152  Sum_probs=46.2

Q ss_pred             ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      ++.|++|+||||++... .-|.+.++|++|+++|++++++|+.+..  .+...++.+++.
T Consensus         1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~--~~~~~~~~l~~~   58 (215)
T TIGR01487         1 IKLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTVP--FARALAVLIGTS   58 (215)
T ss_pred             CcEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcch--hHHHHHHHhCCC
Confidence            47899999999998765 5589999999999999999999987643  244455666765

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=98.22  E-value=4.4e-06  Score=76.17  Aligned_cols=64  Identities=25%  Similarity=0.391  Sum_probs=49.4

Q ss_pred             ccEEEEeccccccCC------------CccCccHHHHHHHHHHCCCeEEEEeCCC---C-C---------chhHHHHhHh
Q 025564           30 FKAWLLDQFGVLHDG------------KKPYPGAISTLEMLATTGAKMVVISNSS---R-R---------ASTTIDKLKS   84 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s---~-~---------~~~~~~~L~~   84 (251)
                      .+.++||-||||+..            ..++||+.++|++|+++|++++|+||++   + .         ...+...++.
T Consensus         2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~   81 (354)
T PRK05446          2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES   81 (354)
T ss_pred             CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH
Confidence            578999999999984            4689999999999999999999999962   1 0         1123456778


Q ss_pred             CCCCCcccccee
Q 025564           85 LGFDPSLFAGAI   96 (251)
Q Consensus        85 ~Gl~~~~~~~Ii   96 (251)
                      +|+.   |+.++
T Consensus        82 ~gl~---fd~i~   90 (354)
T PRK05446         82 QGIK---FDEVL   90 (354)
T ss_pred             cCCc---eeeEE
Confidence            8885   35544

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.20  E-value=3.5e-06  Score=73.91  Aligned_cols=59  Identities=17%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             cCccEEEEeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      .+++.+++|+||||++..+.+ +-..++|++|+++|++++++|+.+.  ..+...++.+|++
T Consensus         5 ~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~--~~i~~~~~~l~~~   64 (271)
T PRK03669          5 QDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTA--AEMLPLQQTLGLQ   64 (271)
T ss_pred             CCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCH--HHHHHHHHHhCCC
Confidence            478999999999999987655 6789999999999999999998663  3355667777774

>PRK10976 putative hydrolase; Provisional

Probab=98.17  E-value=4.7e-06  Score=72.61  Aligned_cols=57  Identities=19%  Similarity=0.192  Sum_probs=46.8

Q ss_pred             ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      +|.+++|+||||++... +-|...++|++|+++|++++++|..+..  .+...++.+|++
T Consensus         2 ikli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~--~~~~~~~~l~~~   59 (266)
T PRK10976          2 YQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHHV--DVGQIRDNLEIK   59 (266)
T ss_pred             ceEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChH--HHHHHHHhcCCC
Confidence            68999999999998765 5588999999999999999999986632  344556677775

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=98.17  E-value=2.4e-06  Score=70.36  Aligned_cols=52  Identities=23%  Similarity=0.365  Sum_probs=41.8

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .+++||+.++|++|+   ++++++||+++.  .....|+++|+... |+.|+++++..
T Consensus        83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~--~~~~~l~~~gl~~~-fd~i~~~~~~~  134 (184)
T TIGR01993        83 LKPDPELRNLLLRLP---GRKIIFTNGDRA--HARRALNRLGIEDC-FDGIFCFDTAN  134 (184)
T ss_pred             CCCCHHHHHHHHhCC---CCEEEEeCCCHH--HHHHHHHHcCcHhh-hCeEEEeeccc
Confidence            457889999998887   589999998853  35678899999887 79999987654

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=98.16  E-value=4.7e-06  Score=73.00  Aligned_cols=57  Identities=18%  Similarity=0.096  Sum_probs=47.1

Q ss_pred             ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      ++.+++|+||||++..+ +-+...++|++|+++|++++++|..+.  ..+...++++|++
T Consensus         2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~   59 (272)
T PRK15126          2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHV--LEMQHILGALSLD   59 (272)
T ss_pred             ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCH--HHHHHHHHHcCCC
Confidence            68999999999998665 568899999999999999999998663  2345566777775

>PLN02954 phosphoserine phosphatase

Probab=98.16  E-value=4.9e-06  Score=70.53  Aligned_cols=41  Identities=20%  Similarity=0.295  Sum_probs=34.6

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      .++||+.++|+.|+++|++++|+||+.+..  +...++.+|++
T Consensus        84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~--i~~~l~~~gi~  124 (224)
T PLN02954         84 RLSPGIPELVKKLRARGTDVYLVSGGFRQM--IAPVAAILGIP  124 (224)
T ss_pred             CCCccHHHHHHHHHHCCCEEEEECCCcHHH--HHHHHHHhCCC
Confidence            467999999999999999999999987533  45667888986

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=98.16  E-value=2.1e-06  Score=68.66  Aligned_cols=109  Identities=22%  Similarity=0.242  Sum_probs=71.4

Q ss_pred             HHhcccCccEEEEeccccccCCCccCccHHH-----------HHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcc
Q 025564           23 HIAETRRFKAWLLDQFGVLHDGKKPYPGAIS-----------TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL   91 (251)
Q Consensus        23 ~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e-----------~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~   91 (251)
                      +-+.  +++.+++|+||||.+|.-.+..-.|           -|+.|.+.|++++|+|...  +.-++.+.+.+|+... 
T Consensus         3 ~ra~--~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~--s~ive~Ra~~LGI~~~-   77 (170)
T COG1778           3 ARAK--NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRD--SPIVEKRAKDLGIKHL-   77 (170)
T ss_pred             hhhh--hceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCCC--CHHHHHHHHHcCCcee-
Confidence            3455  8999999999999998744332222           4788999999999999744  3447789999999976 


Q ss_pred             ccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCcee
Q 025564           92 FAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKV  141 (251)
Q Consensus        92 ~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~  141 (251)
                      +..+-..-.+..+.+++.+...     ..+-.+|.+...+..++..|+..
T Consensus        78 ~qG~~dK~~a~~~L~~~~~l~~-----e~~ayiGDD~~Dlpvm~~vGls~  122 (170)
T COG1778          78 YQGISDKLAAFEELLKKLNLDP-----EEVAYVGDDLVDLPVMEKVGLSV  122 (170)
T ss_pred             eechHhHHHHHHHHHHHhCCCH-----HHhhhhcCccccHHHHHHcCCcc
Confidence            5666666666666666655421     11222333222344566666643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.15  E-value=4.6e-06  Score=86.03  Aligned_cols=53  Identities=21%  Similarity=0.400  Sum_probs=43.6

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC-CccccceeechhhH
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD-PSLFAGAITSGELT  102 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~-~~~~~~Iits~~~~  102 (251)
                      ++||+.++|++|+++|++++|+||+.+.  .+...|+++|+. .+ |+.+++++++.
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~--~~~~~L~~~gl~~~~-Fd~iv~~~~~~  215 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSADRI--KVDANLAAAGLPLSM-FDAIVSADAFE  215 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHcCCChhH-CCEEEECcccc
Confidence            4789999999999999999999998743  355778999996 55 68898887654

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=98.12  E-value=6.7e-06  Score=71.65  Aligned_cols=60  Identities=27%  Similarity=0.345  Sum_probs=50.2

Q ss_pred             cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      |.++.+++|+||||.+... .-+...++|++++++|++++++|+++.  ..+...++.+++..
T Consensus         1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~--~~~~~~~~~l~~~~   61 (264)
T COG0561           1 MMIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPL--PDVLSILEELGLDG   61 (264)
T ss_pred             CCeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCCh--HHHHHHHHHcCCCc
Confidence            4789999999999998887 558899999999999999999998764  33556677777763

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.11  E-value=7.1e-06  Score=72.61  Aligned_cols=58  Identities=19%  Similarity=0.158  Sum_probs=47.9

Q ss_pred             ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      ++.|++|+||||++... ..+-+.++|++|+++|++++++|+++  ..++...++++|+..
T Consensus         1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt--~~ev~~l~~~Lgl~~   59 (302)
T PRK12702          1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRT--RAQLEHLCRQLRLEH   59 (302)
T ss_pred             CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHhCCCC
Confidence            47899999999999554 67889999999999999999999765  344666667788764

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=98.10  E-value=6.5e-06  Score=71.56  Aligned_cols=54  Identities=24%  Similarity=0.255  Sum_probs=46.4

Q ss_pred             EEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        33 ~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      +++|+||||++..+ .++.+.++|++|+++|++++++|+.+  ...+...++++|+.
T Consensus         2 i~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~TgR~--~~~~~~~~~~~~~~   56 (256)
T TIGR01486         2 IFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTSKT--AAEVEYLRKELGLE   56 (256)
T ss_pred             EEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcCCC--HHHHHHHHHHcCCC
Confidence            78999999999887 78889999999999999999999755  34466777888875

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>smart00775 LNS2 LNS2 domain

Probab=98.10  E-value=8.5e-06  Score=66.05  Aligned_cols=42  Identities=14%  Similarity=0.211  Sum_probs=37.8

Q ss_pred             EEEEeccccccCCC------------ccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           32 AWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        32 ~~l~D~DGvL~~g~------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      .|++|+||||.+..            ...|++.+++++++++|++++++|+.+.
T Consensus         1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~   54 (157)
T smart00775        1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPI   54 (157)
T ss_pred             CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcH
Confidence            37999999999876            5679999999999999999999998764

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=98.09  E-value=7.6e-06  Score=69.34  Aligned_cols=54  Identities=20%  Similarity=0.236  Sum_probs=44.6

Q ss_pred             EEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        33 ~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      +++|+||||.+..+ ..+...++|++|+++|++++++||++..  .+...++.+|+.
T Consensus         2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~--~~~~~~~~l~~~   56 (221)
T TIGR02463         2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTAA--EVEYLQKALGLT   56 (221)
T ss_pred             EEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHH--HHHHHHHHcCCC
Confidence            78999999998766 5667999999999999999999998743  345566777775

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=98.08  E-value=4.3e-06  Score=66.64  Aligned_cols=53  Identities=30%  Similarity=0.283  Sum_probs=39.9

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      +...+||+.++|+.|+++|++++++||+++..  ....++.+ +... |+.++++++
T Consensus        62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~--~~~~~~~~-l~~~-f~~i~~~~~  114 (154)
T TIGR01549        62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRA--QKLLLRKH-LGDY-FDLILGSDE  114 (154)
T ss_pred             hheeccCHHHHHHHHHHCcCeEEEEeCCchHH--HHHHHHHH-HHhc-CcEEEecCC
Confidence            33457999999999999999999999988543  33455555 5555 577777665

HAD subfamilies caused by an overly broad single model.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.07  E-value=1.1e-05  Score=77.09  Aligned_cols=72  Identities=22%  Similarity=0.240  Sum_probs=55.0

Q ss_pred             HHhcccCccEEEEeccccccCCC-------------ccCccHHHHHHHHHHCCCeEEEEeCCCCC------c----hhHH
Q 025564           23 HIAETRRFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRR------A----STTI   79 (251)
Q Consensus        23 ~~~~~~~~~~~l~D~DGvL~~g~-------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~------~----~~~~   79 (251)
                      +.-.  +.+.++||+||||....             -++||+.+.|+.|++.|++++|+||.+.-      .    ..+.
T Consensus       163 ~~~~--~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~  240 (526)
T TIGR01663       163 GVKG--QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIE  240 (526)
T ss_pred             CcCc--cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHH
Confidence            4445  67899999999999643             15899999999999999999999998751      1    1245


Q ss_pred             HHhHhCCCCCccccceeech
Q 025564           80 DKLKSLGFDPSLFAGAITSG   99 (251)
Q Consensus        80 ~~L~~~Gl~~~~~~~Iits~   99 (251)
                      ..|+++|++   |+.+++++
T Consensus       241 ~iL~~lgip---fdviia~~  257 (526)
T TIGR01663       241 AIVAKLGVP---FQVFIAIG  257 (526)
T ss_pred             HHHHHcCCc---eEEEEeCC
Confidence            667888986   45566554

Note that the EC number for the kinase function is: 2.7.1.78

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=98.06  E-value=5.8e-06  Score=71.21  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      +||+.++|++|++. ++++++||++..       ++.+|+..+ |+.|+++++..
T Consensus       115 ~~gv~~~L~~L~~~-~~l~i~Tn~~~~-------~~~~gl~~~-fd~i~~~~~~~  160 (238)
T PRK10748        115 PQATHDTLKQLAKK-WPLVAITNGNAQ-------PELFGLGDY-FEFVLRAGPHG  160 (238)
T ss_pred             CccHHHHHHHHHcC-CCEEEEECCCch-------HHHCCcHHh-hceeEecccCC
Confidence            47888899999875 899999997632       366899888 78888887654

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=98.04  E-value=1e-05  Score=66.20  Aligned_cols=54  Identities=17%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ..++||+.++|+.|+++|++++++||+.+..  +...++++|+... |+.++++...
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~--~~~~l~~~~l~~~-f~~i~~~~~~  124 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFF--IDPVLEGIGEKDV-FIEIYSNPAS  124 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcHHH--HHHHHHHcCChhh-eeEEeccCce
Confidence            5788999999999999999999999987532  4566788999877 6888876543

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>PTZ00174 phosphomannomutase; Provisional

Probab=98.02  E-value=8.6e-06  Score=70.63  Aligned_cols=55  Identities=22%  Similarity=0.219  Sum_probs=45.0

Q ss_pred             ccCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564           27 TRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK   83 (251)
Q Consensus        27 ~~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~   83 (251)
                      +|+++.|++|+||||.+... .-|...++|++|+++|++++++|..+.  ..+.+.++
T Consensus         2 ~~~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~--~~i~~~l~   57 (247)
T PTZ00174          2 EMKKTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSDY--PKIKEQLG   57 (247)
T ss_pred             CCCCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHh
Confidence            37899999999999998876 558889999999999999999998653  23444443

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=98.00  E-value=1.5e-05  Score=69.20  Aligned_cols=55  Identities=25%  Similarity=0.361  Sum_probs=44.9

Q ss_pred             EEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           32 AWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        32 ~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      .|++|+||||++... .-+...++|++|+++|++++++|+.+.  ..+...++++|+.
T Consensus         1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~--~~~~~~~~~~~~~   56 (256)
T TIGR00099         1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPY--KEVKNILKELGLD   56 (256)
T ss_pred             CEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCCC
Confidence            378999999999865 457999999999999999999998773  2355566777765

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=97.97  E-value=1.2e-05  Score=67.91  Aligned_cols=54  Identities=26%  Similarity=0.414  Sum_probs=45.1

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .+++|++.++|+.|+++ ++++++||+.+..  ...+|+++|+... |+.|++|++..
T Consensus        98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~--~~~~l~~~gl~~~-Fd~v~~s~~~g  151 (229)
T COG1011          98 LPDYPEALEALKELGKK-YKLGILTNGARPH--QERKLRQLGLLDY-FDAVFISEDVG  151 (229)
T ss_pred             CccChhHHHHHHHHHhh-ccEEEEeCCChHH--HHHHHHHcCChhh-hheEEEecccc
Confidence            46788889999999988 9999999976433  4478899999888 79999999866

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=97.97  E-value=5.8e-06  Score=69.00  Aligned_cols=69  Identities=16%  Similarity=0.030  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      +....+++.+.++|.++ |+||.+....  .  .+..-.+...++.. +......+||+|.+|+.+++++|++|-
T Consensus       108 ~g~~~~l~~L~~~g~~~~i~Sn~~~~~~--~--~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~  178 (203)
T TIGR02252       108 PDAIKLLKDLRERGLILGVISNFDSRLR--G--LLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPE  178 (203)
T ss_pred             cCHHHHHHHHHHCCCEEEEEeCCchhHH--H--HHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChh
Confidence            34567777776778764 7788654221  1  11111222333332 333445689999999999999998764

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=97.90  E-value=2e-05  Score=66.69  Aligned_cols=54  Identities=19%  Similarity=0.202  Sum_probs=42.8

Q ss_pred             EEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        33 ~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      ++||+||||++... +-|...++|++|+++|++++++|..+.  ..+...++.+|+.
T Consensus         1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~--~~~~~~~~~l~~~   55 (225)
T TIGR01482         1 IASDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVTGNSV--QFARALAKLIGTP   55 (225)
T ss_pred             CeEeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCch--HHHHHHHHHhCCC
Confidence            58999999998876 447889999999999999999998663  2344555667754

catalyze the same reaction as SPP.

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=97.89  E-value=4.9e-05  Score=68.65  Aligned_cols=42  Identities=19%  Similarity=0.124  Sum_probs=32.7

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      ++.||+.++|+.|++.|++++|+||+.+..  ....++++|++.
T Consensus       181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~--~~~l~~~Lgld~  222 (322)
T PRK11133        181 PLMPGLTELVLKLQALGWKVAIASGGFTYF--ADYLRDKLRLDA  222 (322)
T ss_pred             CCChhHHHHHHHHHHcCCEEEEEECCcchh--HHHHHHHcCCCe
Confidence            568999999999999999999999987532  223445678753

>PHA02597 30

Probab=97.87  E-value=3e-05  Score=64.50  Aligned_cols=53  Identities=11%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc---cccceeechh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS---LFAGAITSGE  100 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~---~~~~Iits~~  100 (251)
                      ..++||+.++|++|++++ +.+++||.+.....  ..++.+|+...   .|+.+++++.
T Consensus        73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~--~~~~~~~l~~~f~~~f~~i~~~~~  128 (197)
T PHA02597         73 LSAYDDALDVINKLKEDY-DFVAVTALGDSIDA--LLNRQFNLNALFPGAFSEVLMCGH  128 (197)
T ss_pred             ccCCCCHHHHHHHHHhcC-CEEEEeCCccchhH--HHHhhCCHHHhCCCcccEEEEecc
Confidence            458999999999999874 67888887643322  23344555432   1456666665

2 hypothetical protein; Provisional

>PLN02887 hydrolase family protein

Probab=97.86  E-value=4.4e-05  Score=73.95  Aligned_cols=65  Identities=25%  Similarity=0.335  Sum_probs=50.5

Q ss_pred             ChHHHhcccCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           20 GLRHIAETRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        20 ~~~~~~~~~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      +++.+--  +++.|++|+||||++..+ +-+...++|++|+++|++++++|+.+.  ..+...++.+|+.
T Consensus       300 ~~~~~~~--~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIATGR~~--~~i~~~l~~L~l~  365 (580)
T PLN02887        300 SLRFYKP--KFSYIFCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIATGKAR--PAVIDILKMVDLA  365 (580)
T ss_pred             chhhhcc--CccEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHhCcc
Confidence            3334444  899999999999998765 568999999999999999999998663  2344556666664

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=97.80  E-value=5.6e-05  Score=61.98  Aligned_cols=58  Identities=26%  Similarity=0.231  Sum_probs=39.1

Q ss_pred             ccEEEEeccccccCC--------------------------CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564           30 FKAWLLDQFGVLHDG--------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK   83 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g--------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~   83 (251)
                      .+.++||+|+|||.-                          ..++|++.++|+.|+++|.+++++|-++.. +-..+.|+
T Consensus         3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P-~~A~~~L~   81 (169)
T PF12689_consen    3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP-DWARELLK   81 (169)
T ss_dssp             -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H-HHHHHHHH
T ss_pred             CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh-HHHHHHHH
Confidence            579999999999951                          146899999999999999999999965532 23456778


Q ss_pred             hCCCC
Q 025564           84 SLGFD   88 (251)
Q Consensus        84 ~~Gl~   88 (251)
                      .+++.
T Consensus        82 ~l~i~   86 (169)
T PF12689_consen   82 LLEID   86 (169)
T ss_dssp             HTT-C
T ss_pred             hcCCC
Confidence            88888

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=97.79  E-value=4.9e-05  Score=64.40  Aligned_cols=54  Identities=33%  Similarity=0.423  Sum_probs=43.6

Q ss_pred             EEEeccccccCCC-ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           33 WLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        33 ~l~D~DGvL~~g~-~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |++|+||||.+.. .+-|...++|++|+++|.+++++|+.+.  ..+...++.+++.
T Consensus         1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~--~~~~~~~~~~~~~   55 (254)
T PF08282_consen    1 IFSDLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGRSY--SSIKRLLKELGID   55 (254)
T ss_dssp             EEEECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSSTH--HHHHHHHHHTTHC
T ss_pred             cEEEECCceecCCCeeCHHHHHHHHhhcccceEEEEEccCcc--cccccccccccch
Confidence            6899999998755 4568999999999999999999997653  3355666677766

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=97.78  E-value=4.9e-05  Score=63.39  Aligned_cols=41  Identities=24%  Similarity=0.441  Sum_probs=33.4

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      ++||+.++|+.|+++ ++++++||+.+..  ....++++|+...
T Consensus        69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~~--~~~~l~~~gl~~~  109 (205)
T PRK13582         69 PLPGAVEFLDWLRER-FQVVILSDTFYEF--AGPLMRQLGWPTL  109 (205)
T ss_pred             CCCCHHHHHHHHHhc-CCEEEEeCCcHHH--HHHHHHHcCCchh
Confidence            479999999999999 9999999987532  4466788898754

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=97.74  E-value=3.7e-05  Score=61.39  Aligned_cols=57  Identities=35%  Similarity=0.567  Sum_probs=48.2

Q ss_pred             CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      ...+++||+.++|+.|+++|++++++||+++  ..+...|+++|+... |+.++++++..
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~--~~~~~~l~~~~~~~~-f~~i~~~~~~~  130 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSR--ERIERVLERLGLDDY-FDEIISSDDVG  130 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEH--HHHHHHHHHTTHGGG-CSEEEEGGGSS
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCc--ccccccccccccccc-cccccccchhh
Confidence            4567899999999999999999999999863  346688899999977 69999887544

...

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=97.71  E-value=0.00013  Score=61.52  Aligned_cols=42  Identities=24%  Similarity=0.406  Sum_probs=33.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      +++||+.++|+.|++.+ +++++||+.+..  ....++++|++..
T Consensus        68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~--~~~il~~lgi~~~  109 (203)
T TIGR02137        68 KPLEGAVEFVDWLRERF-QVVILSDTFYEF--SQPLMRQLGFPTL  109 (203)
T ss_pred             CCCccHHHHHHHHHhCC-eEEEEeCChHHH--HHHHHHHcCCchh
Confidence            67999999999999975 999999987432  3456778898754

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=97.70  E-value=9.8e-06  Score=70.20  Aligned_cols=67  Identities=9%  Similarity=0.085  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHH-HH-hCCCeEEecCCCHHHHHHHHHhcCCc
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EK-LGGEVRWMGKPDKVVQLLCSLSSSVI  242 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~-~~-~g~~~~~~GKP~~~~~~~a~~~l~~~  242 (251)
                      .....++.+..+|.++ |+||........   .+..-.+...+ .. .+.+....+||+|.+|..+++++++.
T Consensus       103 g~~e~L~~L~~~g~~l~IvT~~~~~~~~~---~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~  172 (253)
T TIGR01422       103 GVIEVIAYLRARGIKIGSTTGYTREMMDV---VAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVY  172 (253)
T ss_pred             CHHHHHHHHHHCCCeEEEECCCcHHHHHH---HHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCC
Confidence            3466677766778876 666654332110   00000011111 22 13444457899999999999999984

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=97.69  E-value=3.2e-05  Score=64.96  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      |..+...++.+.++|.++ ++||......... .......+...++.. +....-.+||+|.+|+.+++++|++|-
T Consensus        96 ~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~-~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~  170 (211)
T TIGR02247        96 RPSMMAAIKTLRAKGFKTACITNNFPTDHSAE-EALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPE  170 (211)
T ss_pred             ChhHHHHHHHHHHCCCeEEEEeCCCCccchhh-hHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHH
Confidence            345677787777788876 6677533211000 011112233444432 333445689999999999999998773

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=97.69  E-value=0.00012  Score=60.00  Aligned_cols=62  Identities=23%  Similarity=0.277  Sum_probs=47.7

Q ss_pred             cCccEEEEeccccc--cCCCccCccHHHHHHHHHHCCC--eEEEEeCCCC-C---chhHHHHh-HhCCCCC
Q 025564           28 RRFKAWLLDQFGVL--HDGKKPYPGAISTLEMLATTGA--KMVVISNSSR-R---ASTTIDKL-KSLGFDP   89 (251)
Q Consensus        28 ~~~~~~l~D~DGvL--~~g~~~~pGa~e~L~~L~~~G~--~v~ivTN~s~-~---~~~~~~~L-~~~Gl~~   89 (251)
                      ..+++++||.|.||  |...++.|...+.+++|++.+.  +++|+|||.. .   ...-++.+ +.+|++.
T Consensus        39 ~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv  109 (168)
T PF09419_consen   39 KGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV  109 (168)
T ss_pred             cCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE
Confidence            48999999999999  4666788999999999999876  4999999852 1   12223444 5588774

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=97.69  E-value=8.1e-05  Score=62.32  Aligned_cols=55  Identities=24%  Similarity=0.343  Sum_probs=45.9

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ...++||+.++|+.|+++|++++++||+++.  .+...|+++|+... |+.++++++.
T Consensus        83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~~  137 (213)
T TIGR01449        83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTP--LARPLLELLGLAKY-FSVLIGGDSL  137 (213)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCcHhh-CcEEEecCCC
Confidence            3578999999999999999999999998743  35678889999887 6888887653

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR01675 plant-AP plant acid phosphatase

Probab=97.68  E-value=0.00013  Score=62.65  Aligned_cols=62  Identities=21%  Similarity=0.372  Sum_probs=51.1

Q ss_pred             CccEEEEeccccccC---------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHH
Q 025564           29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTID   80 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~---------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~   80 (251)
                      ..++++||+|-|+..                           ...++|++.++++.|+++|++++|+||.+. .++...+
T Consensus        76 g~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~  155 (229)
T TIGR01675        76 GMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLD  155 (229)
T ss_pred             CCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence            678999999999865                           225789999999999999999999999774 2334567


Q ss_pred             HhHhCCCCCc
Q 025564           81 KLKSLGFDPS   90 (251)
Q Consensus        81 ~L~~~Gl~~~   90 (251)
                      .|.+.|++..
T Consensus       156 nL~~~G~~~~  165 (229)
T TIGR01675       156 NLINAGFTGW  165 (229)
T ss_pred             HHHHcCCCCc
Confidence            8889999864

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=97.67  E-value=7.7e-05  Score=62.00  Aligned_cols=56  Identities=21%  Similarity=0.360  Sum_probs=47.1

Q ss_pred             CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ....++||+.++|++|+++|++++++||++.  ..+...++++|+... |+.+++++++
T Consensus        89 ~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~--~~~~~~l~~~gl~~~-fd~i~~s~~~  144 (198)
T TIGR01428        89 LRLPPHPDVPAGLRALKERGYRLAILSNGSP--AMLKSLVKHAGLDDP-FDAVLSADAV  144 (198)
T ss_pred             hcCCCCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHCCChhh-hheeEehhhc
Confidence            3456899999999999999999999999874  335677889999887 7999998764

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=97.62  E-value=5e-05  Score=65.31  Aligned_cols=62  Identities=21%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             CccEEEEeccccccC---------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCCC-chhHHH
Q 025564           29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTID   80 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~---------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~~~~~~   80 (251)
                      +..+++||+|+|+.+                           ...++||+.++++.++++|..++|+||.+.. ++.-.+
T Consensus        71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~  150 (229)
T PF03767_consen   71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEK  150 (229)
T ss_dssp             SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHH
T ss_pred             CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHH
Confidence            678999999999864                           1367999999999999999999999997643 344567


Q ss_pred             HhHhCCCCCc
Q 025564           81 KLKSLGFDPS   90 (251)
Q Consensus        81 ~L~~~Gl~~~   90 (251)
                      .|++.|+...
T Consensus       151 nL~~~G~~~~  160 (229)
T PF03767_consen  151 NLKKAGFPGW  160 (229)
T ss_dssp             HHHHHTTSTB
T ss_pred             HHHHcCCCcc
Confidence            8999998764

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=97.60  E-value=0.00019  Score=62.94  Aligned_cols=62  Identities=18%  Similarity=0.316  Sum_probs=50.3

Q ss_pred             CccEEEEeccccccC----------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHH
Q 025564           29 RFKAWLLDQFGVLHD----------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTI   79 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~----------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~   79 (251)
                      ..++++||+|+|+.+                            ...++||+.++.++++++|.+++++||.+. .++.-.
T Consensus       100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~  179 (275)
T TIGR01680       100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE  179 (275)
T ss_pred             CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence            568999999999872                            225689999999999999999999999874 233445


Q ss_pred             HHhHhCCCCCc
Q 025564           80 DKLKSLGFDPS   90 (251)
Q Consensus        80 ~~L~~~Gl~~~   90 (251)
                      +-|++.|+...
T Consensus       180 ~NL~kaGy~~~  190 (275)
T TIGR01680       180 ANLKKAGYHTW  190 (275)
T ss_pred             HHHHHcCCCCc
Confidence            77888999854

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=97.59  E-value=0.00013  Score=59.30  Aligned_cols=42  Identities=36%  Similarity=0.498  Sum_probs=33.3

Q ss_pred             cEEEEeccccccCCC------------ccC-ccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           31 KAWLLDQFGVLHDGK------------KPY-PGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~------------~~~-pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      |..+||+||||....            .++ |++.+.|++|.+.|+.++|+||-+
T Consensus         1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~   55 (159)
T PF08645_consen    1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQS   55 (159)
T ss_dssp             SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-C
T ss_pred             CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCcc
Confidence            468999999997532            245 589999999999999999999975

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=97.52  E-value=0.0002  Score=60.75  Aligned_cols=41  Identities=12%  Similarity=0.095  Sum_probs=33.0

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      ..++||+.++|+.|+++|++++|+||+.+..  +...|+++ +.
T Consensus        73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~--i~~il~~~-~~  113 (219)
T PRK09552         73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFF--VYPLLQGL-IP  113 (219)
T ss_pred             CCcCcCHHHHHHHHHHcCCeEEEECCCcHHH--HHHHHHHh-CC
Confidence            4678999999999999999999999987532  44566666 53

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=97.52  E-value=0.00021  Score=69.81  Aligned_cols=59  Identities=20%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |..+.|++|+||||.+... ..+.+.++|++|+++|++++++|..+.  ..+...++.+|+.
T Consensus       414 ~~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~--~~i~~l~~~Lgl~  473 (694)
T PRK14502        414 QFKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCSAKTM--GEQDLYRNELGIK  473 (694)
T ss_pred             ceeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHHcCCC
Confidence            3568999999999998654 567889999999999999999998763  2344555667764

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=97.51  E-value=0.00023  Score=59.40  Aligned_cols=51  Identities=29%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             EEEEeccccccCCC--ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh
Q 025564           32 AWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (251)
Q Consensus        32 ~~l~D~DGvL~~g~--~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~   84 (251)
                      .+++|+||||....  ++-+.+.++|++|+++|.+++++|+++..  .+...++.
T Consensus         1 li~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~--~~~~~~~~   53 (204)
T TIGR01484         1 LLFFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSLA--EIKELLKQ   53 (204)
T ss_pred             CEEEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHH--HHHHHHHh
Confidence            37899999999764  46689999999999999999999987743  24444444

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=97.49  E-value=0.00026  Score=57.54  Aligned_cols=52  Identities=35%  Similarity=0.530  Sum_probs=42.4

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .+++||+.++|+.|+++|++++++||++...   ...+.++|+... |+.++++.+
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~---~~~~~~~~l~~~-f~~i~~~~~  135 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH---AVLVQELGLRDL-FDVVIFSGD  135 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCCHHH-CCEEEEcCC
Confidence            4788999999999999999999999988533   234445899887 788888754

HAD subfamilies caused by an overly broad single model.

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=97.48  E-value=0.00019  Score=58.61  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=44.0

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ...++||+.++|++|+++|++++++||+..    ....|+++|+... |+.++++.+.
T Consensus        85 ~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~----~~~~l~~~~l~~~-f~~~~~~~~~  137 (185)
T TIGR01990        85 PADVLPGIKNLLDDLKKNNIKIALASASKN----APTVLEKLGLIDY-FDAIVDPAEI  137 (185)
T ss_pred             CcccCccHHHHHHHHHHCCCeEEEEeCCcc----HHHHHHhcCcHhh-CcEEEehhhc
Confidence            347899999999999999999999998642    2356889999988 7888888754

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=97.44  E-value=0.00035  Score=60.19  Aligned_cols=73  Identities=16%  Similarity=0.084  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhCCCc-EEEccCCccccccCceeeCchHHHHHHHHh--CCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564          173 DLEKILEICASKKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL--GGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL  249 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~-li~~n~D~~~~~~~~~~~~~G~i~~~~~~~--g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~  249 (251)
                      .++.+++.+.++|.. .+.+|-|...+...   ...|. ...+...  +.+ .-+=||+|.||++|+++++++|-=.+|+
T Consensus       117 ~~~~~lq~lR~~g~~l~iisN~d~r~~~~l---~~~~l-~~~fD~vv~S~e-~g~~KPDp~If~~al~~l~v~Pee~vhI  191 (237)
T KOG3085|consen  117 GMQELLQKLRKKGTILGIISNFDDRLRLLL---LPLGL-SAYFDFVVESCE-VGLEKPDPRIFQLALERLGVKPEECVHI  191 (237)
T ss_pred             HHHHHHHHHHhCCeEEEEecCCcHHHHHHh---hccCH-HHhhhhhhhhhh-hccCCCChHHHHHHHHHhCCChHHeEEe
Confidence            445777777778844 47789888877322   22222 1333321  222 2455999999999999999999888877


Q ss_pred             c
Q 025564          250 D  250 (251)
Q Consensus       250 ~  250 (251)
                      |
T Consensus       192 g  192 (237)
T KOG3085|consen  192 G  192 (237)
T ss_pred             c
Confidence            5

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00032  Score=58.00  Aligned_cols=43  Identities=40%  Similarity=0.511  Sum_probs=38.7

Q ss_pred             ccEEEEeccccccCCCc----------cCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           30 FKAWLLDQFGVLHDGKK----------PYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~----------~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      .+++++|-||||.....          ++||+.+++..|++.|++++++||.+
T Consensus         5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQs   57 (181)
T COG0241           5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQS   57 (181)
T ss_pred             CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCC
Confidence            57999999999986554          68999999999999999999999965

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=97.38  E-value=0.00021  Score=61.26  Aligned_cols=54  Identities=9%  Similarity=0.084  Sum_probs=44.1

Q ss_pred             EEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      .+++|+||||++..+.++...++++ ++++|++++++|..+  ...+...++.+++.
T Consensus         1 li~~DlDgTLl~~~~~~~~~~~~~~-~~~~gi~~viaTGR~--~~~v~~~~~~l~l~   54 (236)
T TIGR02471         1 LIITDLDNTLLGDDEGLASFVELLR-GSGDAVGFGIATGRS--VESAKSRYAKLNLP   54 (236)
T ss_pred             CeEEeccccccCCHHHHHHHHHHHH-hcCCCceEEEEeCCC--HHHHHHHHHhCCCC
Confidence            3789999999998777777777777 689999999999755  45577888888886

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>PLN02423 phosphomannomutase

Probab=97.37  E-value=0.00037  Score=60.43  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=36.3

Q ss_pred             CccEEE-EeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           29 RFKAWL-LDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        29 ~~~~~l-~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      +++.++ ||+||||.++.+.+ |...++|++|+++ ++++++|..+
T Consensus         5 ~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~~-i~fviaTGR~   49 (245)
T PLN02423          5 KPGVIALFDVDGTLTAPRKEATPEMLEFMKELRKV-VTVGVVGGSD   49 (245)
T ss_pred             ccceEEEEeccCCCcCCCCcCCHHHHHHHHHHHhC-CEEEEECCcC
Confidence            566555 99999999988755 6889999999976 9999999764

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=97.36  E-value=0.00036  Score=61.30  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=42.4

Q ss_pred             cEEEEeccccccC------CCccCccHHHHHHHHHH-CCCeEEEEeCCCCCchhHHHHhHhCC
Q 025564           31 KAWLLDQFGVLHD------GKKPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG   86 (251)
Q Consensus        31 ~~~l~D~DGvL~~------g~~~~pGa~e~L~~L~~-~G~~v~ivTN~s~~~~~~~~~L~~~G   86 (251)
                      ..|++|+||||.+      ...+-|...+.|++|++ .|.+++|+|+.+.  ..+.+.++.++
T Consensus        15 ~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~--~~~~~~~~~~~   75 (266)
T PRK10187         15 YAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSM--VELDALAKPYR   75 (266)
T ss_pred             EEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCH--HHHHHhcCccc
Confidence            5899999999997      34677899999999998 7999999997653  33445554444

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=97.34  E-value=3.6e-05  Score=64.49  Aligned_cols=72  Identities=22%  Similarity=0.180  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLI  247 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~  247 (251)
                      ....+++.+..+|.++ |+||........   .+..-.+...+... +.+....+||+|.+|..+++++++++--.+
T Consensus        89 g~~~~L~~l~~~g~~~~i~S~~~~~~~~~---~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~  162 (213)
T TIGR01449        89 GVEATLGALRAKGLRLGLVTNKPTPLARP---LLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV  162 (213)
T ss_pred             CHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence            3466677666778765 666654432211   01111122223322 444445689999999999999998774333

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=97.34  E-value=0.00035  Score=60.46  Aligned_cols=56  Identities=16%  Similarity=0.041  Sum_probs=44.4

Q ss_pred             EEEEeccccccC---CC-ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           32 AWLLDQFGVLHD---GK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        32 ~~l~D~DGvL~~---g~-~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      .++.|+||||.+   +. +..|...+++++++++|++++++|..+  ..++...++.+++..
T Consensus         3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~--~~~~~~~~~~~~~~~   62 (249)
T TIGR01485         3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRS--PHSYKELQKQKPLLT   62 (249)
T ss_pred             EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCC--HHHHHHHHhcCCCCC
Confidence            688899999996   44 456899999999999999999999755  444556666677754

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=97.33  E-value=0.00037  Score=56.37  Aligned_cols=40  Identities=20%  Similarity=0.291  Sum_probs=36.1

Q ss_pred             EEEeccccccCCC------------ccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           33 WLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        33 ~l~D~DGvL~~g~------------~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      |++|+||||...+            ...||+.++++.++++|+++..+|..+
T Consensus         2 VvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp   53 (157)
T PF08235_consen    2 VVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARP   53 (157)
T ss_pred             EEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCc
Confidence            7899999999874            467999999999999999999999765

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=97.31  E-value=9e-05  Score=65.75  Aligned_cols=71  Identities=15%  Similarity=0.137  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccC-ceeeCchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEAR-ALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~-~~~~~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      +.....++.+..+|.++ |+||......... ....+.+ +...+...+......+||+|.+|..++++++++|
T Consensus       147 pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p  219 (286)
T PLN02779        147 PGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDP  219 (286)
T ss_pred             hhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-ccCceEEEeccccCCCCCCHHHHHHHHHHhCcCh
Confidence            44566777767778876 6667533211100 0000000 0000111123334568999999999999999876

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=97.29  E-value=0.00034  Score=60.55  Aligned_cols=57  Identities=16%  Similarity=0.192  Sum_probs=45.6

Q ss_pred             CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ....++||+.++|++|+++|++++++||+++.  .+...|+++|+....++.|++++++
T Consensus        96 ~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~--~~~~~l~~~gl~~~f~d~ii~~~~~  152 (253)
T TIGR01422        96 EYSSPIPGVIEVIAYLRARGIKIGSTTGYTRE--MMDVVAPEAALQGYRPDYNVTTDDV  152 (253)
T ss_pred             hcCccCCCHHHHHHHHHHCCCeEEEECCCcHH--HHHHHHHHHHhcCCCCceEEccccC
Confidence            34578999999999999999999999998743  3556788889887622678887754

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=97.27  E-value=0.00038  Score=57.94  Aligned_cols=52  Identities=37%  Similarity=0.397  Sum_probs=44.3

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|++|+++|++++++||++..   +...|+++|+... |+.++++.+.
T Consensus       105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~---~~~~l~~~~l~~~-fd~i~~s~~~  156 (203)
T TIGR02252       105 QVYPDAIKLLKDLRERGLILGVISNFDSR---LRGLLEALGLLEY-FDFVVTSYEV  156 (203)
T ss_pred             eeCcCHHHHHHHHHHCCCEEEEEeCCchh---HHHHHHHCCcHHh-cceEEeeccc
Confidence            68999999999999999999999997642   4567889999888 7899888764

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>PRK08238 hypothetical protein; Validated

Probab=97.25  E-value=0.0006  Score=64.79  Aligned_cols=49  Identities=22%  Similarity=0.302  Sum_probs=38.1

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ..||+.+.+++++++|++++++||+.+..  ....++++|+    |+.++++++.
T Consensus        73 ~~pga~e~L~~lk~~G~~v~LaTas~~~~--a~~i~~~lGl----Fd~Vigsd~~  121 (479)
T PRK08238         73 YNEEVLDYLRAERAAGRKLVLATASDERL--AQAVAAHLGL----FDGVFASDGT  121 (479)
T ss_pred             CChhHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHHcCC----CCEEEeCCCc
Confidence            46999999999999999999999987532  3455677887    3667766643

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=97.24  E-value=0.00094  Score=57.29  Aligned_cols=63  Identities=35%  Similarity=0.468  Sum_probs=52.3

Q ss_pred             CccEEEEeccccccC---------------------------CCccCccHHHHHHHHHHCCCeEEEEeCCCCCc--hhHH
Q 025564           29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRA--STTI   79 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~---------------------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~--~~~~   79 (251)
                      +..+|++|+|-|+.+                           ..+++|||.||+++..++|..+.++||..+..  ..-.
T Consensus        78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~  157 (274)
T COG2503          78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTI  157 (274)
T ss_pred             CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhH
Confidence            445999999999987                           24789999999999999999999999987533  3345


Q ss_pred             HHhHhCCCCCcc
Q 025564           80 DKLKSLGFDPSL   91 (251)
Q Consensus        80 ~~L~~~Gl~~~~   91 (251)
                      +.|++.|++...
T Consensus       158 ~nLk~~g~~~~~  169 (274)
T COG2503         158 ENLKSEGLPQVL  169 (274)
T ss_pred             HHHHHcCccccc
Confidence            789999998763

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=97.23  E-value=0.0004  Score=58.25  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=42.5

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ..++||+.++|+.|+++|++++++||++.........+...++... |+.++++.+.
T Consensus        93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~-fd~v~~s~~~  148 (211)
T TIGR02247        93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMAL-FDAVVESCLE  148 (211)
T ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhh-CCEEEEeeec
Confidence            4689999999999999999999999987532222234455677777 6888877654

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=97.23  E-value=0.00069  Score=54.88  Aligned_cols=44  Identities=23%  Similarity=0.241  Sum_probs=34.6

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      ...+.||+.++++.++++|++++++|++.+.  .+...++++|+..
T Consensus        71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~--~i~~~~~~~g~~~  114 (177)
T TIGR01488        71 QVALRPGARELISWLKERGIDTVIVSGGFDF--FVEPVAEKLGIDD  114 (177)
T ss_pred             cCCcCcCHHHHHHHHHHCCCEEEEECCCcHH--HHHHHHHHcCCch
Confidence            3456799999999999999999999997643  2445677788764

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>PLN02811 hydrolase

Probab=97.21  E-value=0.00073  Score=57.30  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=40.7

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHh-HhCCCCCccccceeech
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL-KSLGFDPSLFAGAITSG   99 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L-~~~Gl~~~~~~~Iits~   99 (251)
                      ...++||+.++|+.|+++|++++++||+++..  +...+ +..++... |+.+++++
T Consensus        76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~--~~~~~~~~~~l~~~-f~~i~~~~  129 (220)
T PLN02811         76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRH--FDLKTQRHGELFSL-MHHVVTGD  129 (220)
T ss_pred             hCCCCccHHHHHHHHHHCCCcEEEEeCCchhh--HHHHHcccHHHHhh-CCEEEECC
Confidence            45789999999999999999999999987532  22333 33467666 68888887

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=97.19  E-value=0.00067  Score=54.92  Aligned_cols=52  Identities=19%  Similarity=0.080  Sum_probs=36.8

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc-cceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF-AGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~-~~Iits~~~  101 (251)
                      +.||+.++|+.|++. +.+++.||+++..  ....++.++.....| +.+++.++.
T Consensus        59 ~rPgv~efL~~l~~~-yel~I~T~~~~~y--A~~vl~~ldp~~~~F~~ri~~rd~~  111 (156)
T TIGR02250        59 LRPFLHEFLKEASKL-YEMHVYTMGTRAY--AQAIAKLIDPDGKYFGDRIISRDES  111 (156)
T ss_pred             ECCCHHHHHHHHHhh-cEEEEEeCCcHHH--HHHHHHHhCcCCCeeccEEEEeccC
Confidence            479999999999955 9999999988643  234567777774215 445665543

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=97.09  E-value=0.0012  Score=55.91  Aligned_cols=60  Identities=22%  Similarity=0.176  Sum_probs=46.3

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      ....|+.|+||||.....-...|.+.+.+|++.|++++++|++++  .++..--+.+|+...
T Consensus         6 ~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~Vi~~SSKT~--aE~~~l~~~l~v~~~   65 (274)
T COG3769           6 MPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVPVILCSSKTR--AEMLYLQKSLGVQGL   65 (274)
T ss_pred             cceEEEEcccCcccCCCCCCCccchHHHHHHHcCCeEEEeccchH--HHHHHHHHhcCCCCC
Confidence            356899999999999666677899999999999999999998764  233233345777743

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=97.02  E-value=0.0017  Score=52.75  Aligned_cols=66  Identities=17%  Similarity=0.092  Sum_probs=47.8

Q ss_pred             cEEEEeccccccCCC-------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhC
Q 025564           31 KAWLLDQFGVLHDGK-------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL   85 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~-------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~   85 (251)
                      ..+++|+|+||....                         ..-||+.|+|+.|.+. +.++|.|++++..  ....++.+
T Consensus         2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y--A~~il~~l   78 (162)
T TIGR02251         2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY--ADPVLDIL   78 (162)
T ss_pred             cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH--HHHHHHHH
Confidence            478999999998532                         1359999999999987 9999999987532  33566777


Q ss_pred             CCCCccccceeech
Q 025564           86 GFDPSLFAGAITSG   99 (251)
Q Consensus        86 Gl~~~~~~~Iits~   99 (251)
                      +.....|+.++...
T Consensus        79 dp~~~~f~~~l~r~   92 (162)
T TIGR02251        79 DRGGKVISRRLYRE   92 (162)
T ss_pred             CcCCCEEeEEEEcc
Confidence            76642145665544

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=97.02  E-value=0.0017  Score=55.14  Aligned_cols=43  Identities=30%  Similarity=0.401  Sum_probs=33.7

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHH-HhHhCCCCCc
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGFDPS   90 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~-~L~~~Gl~~~   90 (251)
                      ..+.||+.++++.++++|.+++++|.+..   .+.+ ..+.+|++..
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~---~lv~~ia~~lg~d~~  119 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFT---FLVEPIAERLGIDYV  119 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChH---HHHHHHHHHhCCchh
Confidence            46789999999999999999999998763   2333 3356888765

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=97.01  E-value=0.00087  Score=55.73  Aligned_cols=54  Identities=17%  Similarity=0.182  Sum_probs=44.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      ++.+++.++|+.|+++|++++++||+++.  .+...|+.+|+... |+.+++++++.
T Consensus       106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~--~~~~~l~~~gl~~~-f~~~~~~~~~~  159 (197)
T TIGR01548       106 ETLLTPKGLLRELHRAPKGMAVVTGRPRK--DAAKFLTTHGLEIL-FPVQIWMEDCP  159 (197)
T ss_pred             ccccCHHHHHHHHHHcCCcEEEECCCCHH--HHHHHHHHcCchhh-CCEEEeecCCC
Confidence            46677899999999999999999998743  35678899999988 78888887743

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]

Probab=97.01  E-value=0.0012  Score=56.56  Aligned_cols=50  Identities=16%  Similarity=0.190  Sum_probs=36.8

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCC-CCCccccceee
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG-FDPSLFAGAIT   97 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~G-l~~~~~~~Iit   97 (251)
                      ..++||+.++++.|+..|++++++||+++..  +..++++++ +... |..++.
T Consensus        91 ~~~~PGa~kLv~~L~~~gip~alat~s~~~~--~~~k~~~~~~~~~~-f~~~v~  141 (222)
T KOG2914|consen   91 SILMPGAEKLVNHLKNNGIPVALATSSTSAS--FELKISRHEDIFKN-FSHVVL  141 (222)
T ss_pred             cccCCcHHHHHHHHHhCCCCeeEEecCCccc--HHHHHHHhhHHHHh-cCCCee
Confidence            4678999999999999999999999987543  345555555 4433 455444

>COG4996 Predicted phosphatase [General function prediction only]

Probab=96.97  E-value=0.0014  Score=51.16  Aligned_cols=63  Identities=21%  Similarity=0.218  Sum_probs=48.9

Q ss_pred             EEEEeccccccCC-------------------------CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCC
Q 025564           32 AWLLDQFGVLHDG-------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG   86 (251)
Q Consensus        32 ~~l~D~DGvL~~g-------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~G   86 (251)
                      +++||.|||+|+.                         .+++|.++++++.++..|+-+..+|=|-  .....+.|+.++
T Consensus         2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~--~~kA~~aLral~   79 (164)
T COG4996           2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF--EDKAIKALRALD   79 (164)
T ss_pred             cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc--hHHHHHHHHHhc
Confidence            6899999999973                         1568999999999999998777777543  223457789999


Q ss_pred             CCCccccceee
Q 025564           87 FDPSLFAGAIT   97 (251)
Q Consensus        87 l~~~~~~~Iit   97 (251)
                      +..+ |..++-
T Consensus        80 ~~~y-Fhy~Vi   89 (164)
T COG4996          80 LLQY-FHYIVI   89 (164)
T ss_pred             hhhh-EEEEEe
Confidence            9988 665443

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=96.77  E-value=0.0027  Score=53.60  Aligned_cols=42  Identities=14%  Similarity=0.057  Sum_probs=33.0

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      ...+.||+.++|+.|+++|++++|+||+.+.  .+...|++++.
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~--~i~~il~~~~~  109 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMDF--FVYPLLEGIVE  109 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcHH--HHHHHHHhhCC
Confidence            4678999999999999999999999998742  23445666543

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=96.73  E-value=0.0023  Score=53.79  Aligned_cols=53  Identities=25%  Similarity=0.448  Sum_probs=45.2

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .+++||+.++|++|+++ ++++++||++..  .+...|+++|+... |+.++++++.
T Consensus        96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~--~~~~~l~~~~l~~~-fd~i~~~~~~  148 (224)
T TIGR02254        96 HQLLPGAFELMENLQQK-FRLYIVTNGVRE--TQYKRLRKSGLFPF-FDDIFVSEDA  148 (224)
T ss_pred             CeeCccHHHHHHHHHhc-CcEEEEeCCchH--HHHHHHHHCCcHhh-cCEEEEcCcc
Confidence            47899999999999999 999999998743  35577899999988 7999988764

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=96.68  E-value=0.0018  Score=54.02  Aligned_cols=54  Identities=22%  Similarity=0.205  Sum_probs=40.5

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh-CCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~-~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++|++|+++|++++++||+++..  ....+.. .++... |+.++++.+..
T Consensus        84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~--~~~~~~~~~~l~~~-fd~v~~s~~~~  138 (199)
T PRK09456         84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH--TTFWPEEYPEVRAA-ADHIYLSQDLG  138 (199)
T ss_pred             ccCHHHHHHHHHHHhCCCcEEEEcCCchhh--HHHHHhhchhHHHh-cCEEEEecccC
Confidence            578999999999999999999999987532  2222333 366666 68888887543

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=96.68  E-value=0.0016  Score=52.35  Aligned_cols=42  Identities=29%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             cEEEEeccccccCCCc--------------------cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           31 KAWLLDQFGVLHDGKK--------------------PYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~~--------------------~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      +.++||+||||+....                    .-||+.+||+.|.+ .+.++|.|++++
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~-~~ev~i~T~~~~   62 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSK-HYEVVIWTSASE   62 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHH-HCEEEEE-SS-H
T ss_pred             CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHH-hceEEEEEeehh
Confidence            5789999999986442                    46999999999955 599999999874

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=96.63  E-value=0.0048  Score=54.24  Aligned_cols=76  Identities=21%  Similarity=0.234  Sum_probs=62.9

Q ss_pred             CccEEEEeccccccCCCc----cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           29 RFKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~----~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      ....++||+|-||.+...    .-|.+.+.|..|++.|.-+++=|-+++  +-+...|++++++.. |+.|++.+..+..
T Consensus       121 ~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~--eHV~~sl~~~~L~~~-Fd~ii~~G~~~~~  197 (297)
T PF05152_consen  121 PPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNR--EHVRHSLKELKLEGY-FDIIICGGNKAGE  197 (297)
T ss_pred             CCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCH--HHHHHHHHHhCCccc-cEEEEeCCccCCc
Confidence            567999999999997654    348999999999999998888887663  446788999999988 8999999987766


Q ss_pred             HHh
Q 025564          105 YLL  107 (251)
Q Consensus       105 ~L~  107 (251)
                      +-.
T Consensus       198 ~~~  200 (297)
T PF05152_consen  198 YNS  200 (297)
T ss_pred             CCc
Confidence            543

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=96.36  E-value=0.0055  Score=59.37  Aligned_cols=101  Identities=17%  Similarity=0.154  Sum_probs=66.6

Q ss_pred             CccEEEEecccccc----CCCccCccHHHHHHHHHHCC-CeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH
Q 025564           29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH  103 (251)
Q Consensus        29 ~~~~~l~D~DGvL~----~g~~~~pGa~e~L~~L~~~G-~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~  103 (251)
                      .+..+.+..||++.    ....++||+.++|++|+++| ++++++||.++..  ....++++|++.. |..+. +.+ ..
T Consensus       363 g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~--a~~i~~~lgi~~~-f~~~~-p~~-K~  437 (556)
T TIGR01525       363 GKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA--AEAVAAELGIDEV-HAELL-PED-KL  437 (556)
T ss_pred             CcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH--HHHHHHHhCCCee-eccCC-HHH-HH
Confidence            45667788887654    46789999999999999999 9999999987532  4567788999876 55542 222 22


Q ss_pred             HHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564          104 QYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus       104 ~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      ..+++...     .|..+..+|.+..+...++..|+
T Consensus       438 ~~v~~l~~-----~~~~v~~vGDg~nD~~al~~A~v  468 (556)
T TIGR01525       438 AIVKELQE-----EGGVVAMVGDGINDAPALAAADV  468 (556)
T ss_pred             HHHHHHHH-----cCCEEEEEECChhHHHHHhhCCE
Confidence            34443321     14567777765433334444443

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=96.31  E-value=0.0076  Score=51.53  Aligned_cols=54  Identities=22%  Similarity=0.241  Sum_probs=38.8

Q ss_pred             hHHHhcccCccEEEEeccccccC--------CCccCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564           21 LRHIAETRRFKAWLLDQFGVLHD--------GKKPYPGAISTLEMLATTGAKMVVISNSSRR   74 (251)
Q Consensus        21 ~~~~~~~~~~~~~l~D~DGvL~~--------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~   74 (251)
                      +.++++.-+....+=.+.|-+|.        ..+++||+.++|++|+++|++++|+||+++.
T Consensus        62 ~~~~~~~d~k~~~lk~lqg~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~  123 (220)
T TIGR01691        62 LHAEMDKDRKATPLKTLQGLIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVP  123 (220)
T ss_pred             HHHHHHcCCCcchHHHHHHHHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHH
Confidence            33444422233555566676664        2368999999999999999999999998853

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=96.30  E-value=0.0094  Score=52.86  Aligned_cols=38  Identities=21%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhC
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL   85 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~   85 (251)
                      .++||+.++|++|+++|++++++||+++.  .+...|+.+
T Consensus       144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~--~~~~~l~~~  181 (286)
T PLN02779        144 PLRPGVLRLMDEALAAGIKVAVCSTSNEK--AVSKIVNTL  181 (286)
T ss_pred             CchhhHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHh
Confidence            68999999999999999999999998743  233455554

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=96.25  E-value=0.0046  Score=59.64  Aligned_cols=98  Identities=15%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             cEEEEeccccc----cCCCccCccHHHHHHHHHHCCC-eEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHH
Q 025564           31 KAWLLDQFGVL----HDGKKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY  105 (251)
Q Consensus        31 ~~~l~D~DGvL----~~g~~~~pGa~e~L~~L~~~G~-~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~  105 (251)
                      ..+.+-.||++    .....++||+.++|++|+++|+ +++++||.+..  .....++++|++.. |..+.. .+ ....
T Consensus       343 ~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~--~a~~i~~~lgi~~~-f~~~~p-~~-K~~~  417 (536)
T TIGR01512       343 TIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRA--VAERVARELGIDEV-HAELLP-ED-KLEI  417 (536)
T ss_pred             eEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHH--HHHHHHHHcCChhh-hhccCc-HH-HHHH
Confidence            33445555544    4567899999999999999999 99999997743  24567788999876 454432 22 2334


Q ss_pred             HhccCchhhhhcCCeEEEeccCCcccccccCCC
Q 025564          106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLG  138 (251)
Q Consensus       106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g  138 (251)
                      +++....     +..+..+|.+..+...++..|
T Consensus       418 i~~l~~~-----~~~v~~vGDg~nD~~al~~A~  445 (536)
T TIGR01512       418 VKELREK-----YGPVAMVGDGINDAPALAAAD  445 (536)
T ss_pred             HHHHHhc-----CCEEEEEeCCHHHHHHHHhCC
Confidence            4433221     456766776533333444444

.

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=96.22  E-value=0.0059  Score=55.58  Aligned_cols=61  Identities=25%  Similarity=0.262  Sum_probs=45.5

Q ss_pred             ccccccCC--------CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhC-C-------CCCccccceeechh
Q 025564           37 QFGVLHDG--------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL-G-------FDPSLFAGAITSGE  100 (251)
Q Consensus        37 ~DGvL~~g--------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~-G-------l~~~~~~~Iits~~  100 (251)
                      .+|.+.+.        ....||+.++|++|+++|++++++||+++..  ....|+.+ |       +... |+.|++++.
T Consensus       167 ~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~y--t~~im~~l~g~~~~~~~w~~y-FD~IIt~a~  243 (343)
T TIGR02244       167 RKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDY--TDKGMKYLLGPFLGEHDWRDY-FDVVIVDAR  243 (343)
T ss_pred             ccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHH--HHHHHHHhhCCcccccchHhh-CcEEEeCCC
Confidence            36777642        2558999999999999999999999998532  33556664 5       6677 687777664

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=96.20  E-value=0.011  Score=49.71  Aligned_cols=58  Identities=22%  Similarity=0.074  Sum_probs=45.5

Q ss_pred             CccEEEEeccccccCCC--------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           29 RFKAWLLDQFGVLHDGK--------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~--------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      ..+.+++|+|+||.+..        ..-|++.+||+.+.+ .+.++|-|.++...  +...+..+|+..
T Consensus        20 ~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y--a~~~l~~l~~~~   85 (195)
T TIGR02245        20 GKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW--IEIKMTELGVLT   85 (195)
T ss_pred             CCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH--HHHHHHHhcccC
Confidence            56899999999999752        235999999999998 79999999877432  345677777643

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=96.13  E-value=0.015  Score=50.20  Aligned_cols=53  Identities=21%  Similarity=0.287  Sum_probs=42.6

Q ss_pred             CCccCccHHHHHHHH--HHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564           44 GKKPYPGAISTLEML--ATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (251)
Q Consensus        44 g~~~~pGa~e~L~~L--~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~   99 (251)
                      +.++-||..++++.+  ++.|..++|+|.+...  -+...|++.|+... |.+|+|..
T Consensus        69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~--fI~~iL~~~gl~~~-f~~I~TNp  123 (234)
T PF06888_consen   69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSF--FIETILEHHGLRDC-FSEIFTNP  123 (234)
T ss_pred             cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHh--HHHHHHHhCCCccc-cceEEeCC
Confidence            456779999999999  4579999999987643  25678899999887 68888764

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=96.12  E-value=0.011  Score=59.22  Aligned_cols=56  Identities=23%  Similarity=0.150  Sum_probs=42.6

Q ss_pred             CccEEEEeccccccCCC------ccCccHHHHHHHHHH-CCCeEEEEeCCCCCchhHHHHhHhCC
Q 025564           29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG   86 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~------~~~pGa~e~L~~L~~-~G~~v~ivTN~s~~~~~~~~~L~~~G   86 (251)
                      +.+.++||+||||....      .+-+.+.++|++|.+ .|..++++|+.+  ...+.+.+..++
T Consensus       491 ~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~--~~~l~~~~~~~~  553 (726)
T PRK14501        491 SRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRD--RDTLERWFGDLP  553 (726)
T ss_pred             cceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC--HHHHHHHhCCCC
Confidence            56899999999999632      355799999999999 599999999765  333545554443

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=96.09  E-value=0.015  Score=56.44  Aligned_cols=100  Identities=17%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             CccEEEEecccccc----CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        29 ~~~~~l~D~DGvL~----~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      ....+.++.||++.    -..++.||+.++|++|+++|++++++||..+..  ....++++|++.  +..+.. . ....
T Consensus       384 g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~--a~~ia~~lgi~~--~~~~~p-~-~K~~  457 (562)
T TIGR01511       384 GSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT--AKAVAKELGINV--RAEVLP-D-DKAA  457 (562)
T ss_pred             CCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHH--HHHHHHHcCCcE--EccCCh-H-HHHH
Confidence            45668888888763    467899999999999999999999999987432  446677889972  233322 1 1222


Q ss_pred             HHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564          105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus       105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      .+++....     +.++..+|.+..+...++..|+
T Consensus       458 ~v~~l~~~-----~~~v~~VGDg~nD~~al~~A~v  487 (562)
T TIGR01511       458 LIKELQEK-----GRVVAMVGDGINDAPALAQADV  487 (562)
T ss_pred             HHHHHHHc-----CCEEEEEeCCCccHHHHhhCCE
Confidence            33322111     4677777865443344555543

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=96.05  E-value=0.0026  Score=52.77  Aligned_cols=49  Identities=22%  Similarity=0.332  Sum_probs=38.7

Q ss_pred             ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      |.+.....+.|++.++|+.|+++|+++.++|+.+...  .....+.+|+..
T Consensus       120 ~~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~--a~~~~~~lgi~~  168 (215)
T PF00702_consen  120 GLFGLRDPLRPGAKEALQELKEAGIKVAILTGDNEST--ASAIAKQLGIFD  168 (215)
T ss_dssp             EEEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHH--HHHHHHHTTSCS
T ss_pred             EEEeecCcchhhhhhhhhhhhccCcceeeeecccccc--cccccccccccc
Confidence            4445667889999999999999999999999866432  445667899953

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>PLN03017 trehalose-phosphatase

Probab=96.03  E-value=0.0091  Score=54.74  Aligned_cols=59  Identities=19%  Similarity=0.107  Sum_probs=42.5

Q ss_pred             chhccCChHHHhccc-C-ccEEEEecccccc---C-CC--ccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           14 LFQTLNGLRHIAETR-R-FKAWLLDQFGVLH---D-GK--KPYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        14 ~~~~~~~~~~~~~~~-~-~~~~l~D~DGvL~---~-g~--~~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      .|.-++.+.++++.- . --++++|+||||.   + ..  .+-|+..++|++|. ++.+++|+|..+.
T Consensus        93 ~psal~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~  159 (366)
T PLN03017         93 HPSALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCI  159 (366)
T ss_pred             CChHHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCH
Confidence            444455555555311 2 2478889999999   3 23  46789999999999 7899999998764

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=96.03  E-value=0.01  Score=49.25  Aligned_cols=33  Identities=27%  Similarity=0.559  Sum_probs=24.9

Q ss_pred             ccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        41 L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      ++.+.+|+|||.|+|++|.+.|....++|..+.
T Consensus        68 ~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~  100 (191)
T PF06941_consen   68 FFSNLPPIPGAVEALKKLRDKGHEIVIITARPP  100 (191)
T ss_dssp             TTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SS
T ss_pred             hhcCCCccHHHHHHHHHHHHcCCcEEEEEecCc
Confidence            566778999999999999999988888887653

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=95.85  E-value=0.018  Score=58.57  Aligned_cols=75  Identities=24%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             ccccCCCchhc-cCChHHHhcccCccEEEEeccccccCCC----ccCccHHHHHHHH-HHCCCeEEEEeCCCCCchhHHH
Q 025564            7 VQSNDPHLFQT-LNGLRHIAETRRFKAWLLDQFGVLHDGK----KPYPGAISTLEML-ATTGAKMVVISNSSRRASTTID   80 (251)
Q Consensus         7 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~DGvL~~g~----~~~pGa~e~L~~L-~~~G~~v~ivTN~s~~~~~~~~   80 (251)
                      +.+.+|..+.. .+.+.+-....+.+++++|+||||....    .+-|+..++|++| ++.|..++++|..++  +.+.+
T Consensus       572 ~~~~~~~~~~l~~~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~--~~L~~  649 (854)
T PLN02205        572 VVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSR--KTLAD  649 (854)
T ss_pred             cccccccccccCHHHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCH--HHHHH
Confidence            44555553332 2233322222256899999999999544    5667999999998 777999999997653  34555


Q ss_pred             HhH
Q 025564           81 KLK   83 (251)
Q Consensus        81 ~L~   83 (251)
                      .+.
T Consensus       650 ~f~  652 (854)
T PLN02205        650 WFS  652 (854)
T ss_pred             HhC
Confidence            553

>PLN02151 trehalose-phosphatase

Probab=95.84  E-value=0.016  Score=52.98  Aligned_cols=58  Identities=22%  Similarity=0.167  Sum_probs=41.3

Q ss_pred             hhccCChHHHhccc--CccEEEEecccccc----C--CCccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           15 FQTLNGLRHIAETR--RFKAWLLDQFGVLH----D--GKKPYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        15 ~~~~~~~~~~~~~~--~~~~~l~D~DGvL~----~--g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      |.-+..+.++++.-  +--++++|+||||.    +  ...+-|+..++|+.|. .+.+++|+|..+.
T Consensus        81 p~a~~~~~~~~~~~~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~  146 (354)
T PLN02151         81 PSALNMFEEILHKSEGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSGRCR  146 (354)
T ss_pred             ChHHHHHHHHHHhhcCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHh-cCCCEEEEECCCH
Confidence            34444555555521  12478999999999    2  3356789999999999 4579999997653

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=95.83  E-value=0.038  Score=43.28  Aligned_cols=89  Identities=7%  Similarity=0.036  Sum_probs=60.9

Q ss_pred             cEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH-HHHhcc
Q 025564           31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH-QYLLRR  109 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~-~~L~~~  109 (251)
                      +...-++++|+..|.++++.+.+.++.|++. ..++++|.....+  +.+.++-.|++.+  .....++.... ..+.+.
T Consensus        15 d~~~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gs--l~~lae~~gi~~~--rv~a~a~~e~K~~ii~eL   89 (152)
T COG4087          15 DSKAGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGS--LVQLAEFVGIPVE--RVFAGADPEMKAKIIREL   89 (152)
T ss_pred             eeecceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchH--HHHHHHHcCCcee--eeecccCHHHHHHHHHHh
Confidence            5667789999999999999999999999999 9999999765433  4455566888764  23333443333 344444


Q ss_pred             CchhhhhcCCeEEEeccCCc
Q 025564          110 DDAWFAALGRSCIHMTWSDR  129 (251)
Q Consensus       110 ~~~~~~~~g~~~~~~g~~~~  129 (251)
                      ..+     +.++..+|.|..
T Consensus        90 kk~-----~~k~vmVGnGaN  104 (152)
T COG4087          90 KKR-----YEKVVMVGNGAN  104 (152)
T ss_pred             cCC-----CcEEEEecCCcc
Confidence            332     356666676543

>PLN02382 probable sucrose-phosphatase

Probab=95.69  E-value=0.022  Score=53.27  Aligned_cols=57  Identities=11%  Similarity=-0.067  Sum_probs=39.7

Q ss_pred             EEEEeccccccCCC--ccC--ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           32 AWLLDQFGVLHDGK--KPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        32 ~~l~D~DGvL~~g~--~~~--pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .++.||||||.++.  +-+  +...+.+++++++|..++++|..+  ...+.+.++.+++...
T Consensus        11 lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~--~~~~~~l~~~~~l~~p   71 (413)
T PLN02382         11 MIVSDLDHTMVDHHDPENLSLLRFNALWEAEYRHDSLLVFSTGRS--PTLYKELRKEKPLLTP   71 (413)
T ss_pred             EEEEcCCCcCcCCCCccchhHHHHHHHHHHhhcCCeeEEEEcCCC--HHHHHHHHHhCCCCCC
Confidence            67889999999763  223  244445588999999999999755  3345555566776543

>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B

Probab=95.63  E-value=0.0096  Score=41.73  Aligned_cols=25  Identities=16%  Similarity=0.032  Sum_probs=20.9

Q ss_pred             EecCCCHHHHHHHHHhcCCc--eEEEE
Q 025564          223 WMGKPDKVVQLLCSLSSSVI--ILFLI  247 (251)
Q Consensus       223 ~~GKP~~~~~~~a~~~l~~~--~~~~~  247 (251)
                      ++|||+|.+|+.|+++++++  ..+||
T Consensus         1 ~~gKP~p~~~~~a~~~~~~~~~~~~~V   27 (75)
T PF13242_consen    1 VCGKPSPGMLEQALKRLGVDPSRCVMV   27 (75)
T ss_dssp             SCSTTSHHHHHHHHHHHTSGGGGEEEE
T ss_pred             CCCCCcHHHHHHHHHHcCCCHHHEEEE
Confidence            47999999999999999874  45555

...

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=95.52  E-value=0.029  Score=49.63  Aligned_cols=49  Identities=10%  Similarity=0.041  Sum_probs=39.2

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccce
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGA   95 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~I   95 (251)
                      ...+.||+.++++.|+++|++++|+|++.+.  .+...|+++|+... +..|
T Consensus       119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~--~Ie~vL~~lgl~~~-~~~I  167 (277)
T TIGR01544       119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGN--VLEEVLRQAGVYHP-NVKV  167 (277)
T ss_pred             CCccCcCHHHHHHHHHHCCCcEEEEeCCcHH--HHHHHHHHcCCCCc-CceE
Confidence            5678999999999999999999999988753  35677888888644 2444

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=95.51  E-value=0.016  Score=48.28  Aligned_cols=76  Identities=11%  Similarity=0.067  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeC-chHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVM-PGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIF  248 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~-~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~  248 (251)
                      ..+..+++.+.++|.++ ++||........   .+. ...+...++.. +......+||+|.+|+.+++++|++|-=.+|
T Consensus        87 ~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~---~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~  163 (199)
T PRK09456         87 PEVIAIMHKLREQGHRVVVLSNTNRLHTTF---WPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF  163 (199)
T ss_pred             HHHHHHHHHHHhCCCcEEEEcCCchhhHHH---HHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence            45677888777788876 667765322110   000 11233344432 4445567899999999999999998865555


Q ss_pred             ec
Q 025564          249 LD  250 (251)
Q Consensus       249 ~~  250 (251)
                      +|
T Consensus       164 vg  165 (199)
T PRK09456        164 FD  165 (199)
T ss_pred             eC
Confidence            53

>PTZ00445 p36-lilke protein; Provisional

Probab=95.24  E-value=0.035  Score=47.02  Aligned_cols=78  Identities=12%  Similarity=0.027  Sum_probs=53.0

Q ss_pred             ChHHHhcccCccEEEEeccccccC-----CCc-----------cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564           20 GLRHIAETRRFKAWLLDQFGVLHD-----GKK-----------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK   83 (251)
Q Consensus        20 ~~~~~~~~~~~~~~l~D~DGvL~~-----g~~-----------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~   83 (251)
                      .+-+++....++++++|+|-||..     ..+           +-|...+++++|++.|++++|+|=+....        
T Consensus        33 ~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~--------  104 (219)
T PTZ00445         33 KFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL--------  104 (219)
T ss_pred             HHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh--------
Confidence            344556656899999999999876     222           46788999999999999999999654210        


Q ss_pred             hCCCCCccccceeechhhHHHHHhc
Q 025564           84 SLGFDPSLFAGAITSGELTHQYLLR  108 (251)
Q Consensus        84 ~~Gl~~~~~~~Iits~~~~~~~L~~  108 (251)
                       ..-+..  +..|++++....-|+.
T Consensus       105 -~~~~~~--~~~Isg~~li~~~lk~  126 (219)
T PTZ00445        105 -IPSENR--PRYISGDRMVEAALKK  126 (219)
T ss_pred             -ccccCC--cceechHHHHHHHHHh
Confidence             111222  4556666666666653

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=95.00  E-value=0.018  Score=50.03  Aligned_cols=65  Identities=22%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             cEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564           31 KAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~   99 (251)
                      ..++.|+||||.++.. ...-..+.++...+.+..++++|.  |+.+.+.+.+++.++...  +.++|+.
T Consensus         3 ~ll~sDlD~Tl~~~~~~~~~~l~~~l~~~~~~~~~~v~~TG--Rs~~~~~~~~~~~~l~~P--d~~I~sv   68 (247)
T PF05116_consen    3 RLLASDLDGTLIDGDDEALARLEELLEQQARPEILFVYVTG--RSLESVLRLLREYNLPQP--DYIITSV   68 (247)
T ss_dssp             EEEEEETBTTTBHCHHHHHHHHHHHHHHHHCCGEEEEEE-S--S-HHHHHHHHHHCT-EE---SEEEETT
T ss_pred             EEEEEECCCCCcCCCHHHHHHHHHHHHHhhCCCceEEEECC--CCHHHHHHHHHhCCCCCC--CEEEecC
Confidence            5789999999994333 222333333323356777788885  445567788888888643  6777764

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>PLN02580 trehalose-phosphatase

Probab=94.99  E-value=0.05  Score=50.28  Aligned_cols=65  Identities=20%  Similarity=0.146  Sum_probs=44.4

Q ss_pred             hhccCChHHHhccc--CccEEEEeccccccC------CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHh
Q 025564           15 FQTLNGLRHIAETR--RFKAWLLDQFGVLHD------GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL   82 (251)
Q Consensus        15 ~~~~~~~~~~~~~~--~~~~~l~D~DGvL~~------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L   82 (251)
                      |.-++++.++.+..  +-.+++||.||||..      ...+-|++.++|+.|.+. .+++|+|..+  .+.+.+.+
T Consensus       102 p~al~~~~~~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~--~~~L~~~l  174 (384)
T PLN02580        102 PSALTSFEQIANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRS--RDKVYELV  174 (384)
T ss_pred             cHHHHHHHHHHHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCC--HHHHHHHh
Confidence            44445555555321  234788999999963      335678999999999988 5899999755  33454444

>TIGR00685 T6PP trehalose-phosphatase

Probab=94.76  E-value=0.06  Score=46.45  Aligned_cols=44  Identities=23%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             CccEEEEeccccccCC------CccCccHHHHHHHHHHC-CCeEEEEeCCC
Q 025564           29 RFKAWLLDQFGVLHDG------KKPYPGAISTLEMLATT-GAKMVVISNSS   72 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g------~~~~pGa~e~L~~L~~~-G~~v~ivTN~s   72 (251)
                      +..+++||.||||..-      ..+-|++.++|+.|.+. +..++|+|..+
T Consensus         2 ~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~   52 (244)
T TIGR00685         2 RKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRK   52 (244)
T ss_pred             CcEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            4578999999999853      23568999999999776 45678999764

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=94.71  E-value=0.11  Score=43.55  Aligned_cols=66  Identities=18%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             ChHHHhcccCccEEEEeccccccC--------------------------------------------------------
Q 025564           20 GLRHIAETRRFKAWLLDQFGVLHD--------------------------------------------------------   43 (251)
Q Consensus        20 ~~~~~~~~~~~~~~l~D~DGvL~~--------------------------------------------------------   43 (251)
                      .+.++..  +.++|+||+|-|+..                                                        
T Consensus         8 e~~~~~~--~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~   85 (227)
T KOG1615|consen    8 ELAKLWR--SADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQ   85 (227)
T ss_pred             HHHHHHH--hcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence            4567777  889999999999975                                                        


Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      -.++-||+.|+..+|+++|.+++++|..=+.-  +.-.-..+|++-
T Consensus        86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~--i~~Va~~Lgi~~  129 (227)
T KOG1615|consen   86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQL--IEPVAEQLGIPK  129 (227)
T ss_pred             CCccCCCHHHHHHHHHHcCCeEEEEcCChHHH--HHHHHHHhCCcH
Confidence            12467999999999999999999999865432  112223477763

>PRK11590 hypothetical protein; Provisional

Probab=94.44  E-value=0.08  Score=44.57  Aligned_cols=50  Identities=18%  Similarity=0.216  Sum_probs=36.3

Q ss_pred             ccCccHHHHH-HHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564           46 KPYPGAISTL-EMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (251)
Q Consensus        46 ~~~pGa~e~L-~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~   99 (251)
                      .++||+.+.| +.|+++|++++++||+++..  +...++.+|+...  ++++.+.
T Consensus        95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~--~~~il~~l~~~~~--~~~i~t~  145 (211)
T PRK11590         95 TAFPVVQERLTTYLLSSDADVWLITGSPQPL--VEQVYFDTPWLPR--VNLIASQ  145 (211)
T ss_pred             cCCccHHHHHHHHHHhCCCEEEEEeCCcHHH--HHHHHHHcccccc--CceEEEE
Confidence            5689999999 67899999999999987532  3456677886432  4555444

>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]

Probab=94.42  E-value=0.059  Score=46.12  Aligned_cols=74  Identities=23%  Similarity=0.291  Sum_probs=47.3

Q ss_pred             HHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHH--hC-CCeEEecCCCHHHHHHHHHhcCCce-E-EEEe
Q 025564          175 EKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK--LG-GEVRWMGKPDKVVQLLCSLSSSVII-L-FLIF  248 (251)
Q Consensus       175 ~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~--~g-~~~~~~GKP~~~~~~~a~~~l~~~~-~-~~~~  248 (251)
                      ++.++.+..+|.|+ ++||.+.-...-.  .=..+.+...+..  .| ...+.-|||+|.+|..|++++|..+ . .+||
T Consensus        98 ~kLv~~L~~~gip~alat~s~~~~~~~k--~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k~lVf  175 (222)
T KOG2914|consen   98 EKLVNHLKNNGIPVALATSSTSASFELK--ISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSKCLVF  175 (222)
T ss_pred             HHHHHHHHhCCCCeeEEecCCcccHHHH--HHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccceEEE
Confidence            67777777889998 6676644322110  1122334444443  22 3447889999999999999999888 3 4555


Q ss_pred             ec
Q 025564          249 LD  250 (251)
Q Consensus       249 ~~  250 (251)
                      -|
T Consensus       176 ed  177 (222)
T KOG2914|consen  176 ED  177 (222)
T ss_pred             CC
Confidence            44

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=94.30  E-value=0.42  Score=38.86  Aligned_cols=65  Identities=15%  Similarity=0.080  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHH-HHhCCCeE-EecCCCHHHHHHHHHhcCCce--EE
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EKLGGEVR-WMGKPDKVVQLLCSLSSSVII--LF  245 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~-~~~g~~~~-~~GKP~~~~~~~a~~~l~~~~--~~  245 (251)
                      |+.+..+++.+..+|.++ ++||.+.            ...+..+ +..+.... -.+||+|.+|+.+++++++++  ++
T Consensus        45 ~pgv~e~L~~Lk~~g~~l~I~Sn~~~------------~~~~~~~~~~~gl~~~~~~~KP~p~~~~~~l~~~~~~~~~~l  112 (170)
T TIGR01668        45 YPALRDWIEELKAAGRKLLIVSNNAG------------EQRAKAVEKALGIPVLPHAVKPPGCAFRRAHPEMGLTSEQVA  112 (170)
T ss_pred             ChhHHHHHHHHHHcCCEEEEEeCCch------------HHHHHHHHHHcCCEEEcCCCCCChHHHHHHHHHcCCCHHHEE
Confidence            566677888877788885 6677652            1122233 33444332 246999999999999999865  44


Q ss_pred             EE
Q 025564          246 LI  247 (251)
Q Consensus       246 ~~  247 (251)
                      ||
T Consensus       113 ~I  114 (170)
T TIGR01668       113 VV  114 (170)
T ss_pred             EE
Confidence            44

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=94.25  E-value=0.024  Score=48.35  Aligned_cols=68  Identities=22%  Similarity=0.211  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhCCCcEEEc-cCCccccccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          174 LEKILEICASKKIPMVVA-NPDYVTVEARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       174 l~~a~~~~~~~g~~li~~-n~D~~~~~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ....++.+..+|.++.++ |..+... ..  .+..-.+...++. ..+..+.-|||+|++|..|+++||+.|-
T Consensus        91 v~~~l~~L~~~~i~~avaS~s~~~~~-~~--~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~  160 (221)
T COG0637          91 VVELLEQLKARGIPLAVASSSPRRAA-ER--VLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPE  160 (221)
T ss_pred             HHHHHHHHHhcCCcEEEecCChHHHH-HH--HHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChH
Confidence            366777766777877554 3332111 11  2222233444554 2455566679999999999999998875

>PRK06769 hypothetical protein; Validated

Probab=94.17  E-value=0.16  Score=41.43  Aligned_cols=69  Identities=10%  Similarity=0.052  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCCeE-----------EecCCCHHHHHHHHHh
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVR-----------WMGKPDKVVQLLCSLS  238 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~-----------~~GKP~~~~~~~a~~~  238 (251)
                      |+.....++.+.++|.++ |+||.........    ..-.+...++..|-...           ...||+|.+|..++++
T Consensus        30 ~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~  105 (173)
T PRK06769         30 FPFTKASLQKLKANHIKIFSFTNQPGIADGIA----TIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK  105 (173)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEECCchhcCCcC----CHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence            355677888877789876 6777654221111    01123333443333221           3469999999999999


Q ss_pred             cCCce
Q 025564          239 SSVII  243 (251)
Q Consensus       239 l~~~~  243 (251)
                      +++++
T Consensus       106 l~~~p  110 (173)
T PRK06769        106 HGLDL  110 (173)
T ss_pred             cCCCH
Confidence            99866

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=94.14  E-value=0.034  Score=45.95  Aligned_cols=74  Identities=16%  Similarity=0.148  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIF  248 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~  248 (251)
                      +....+++.+.++|.++ ++||.+......   .+..-.+...++.. +.+.+-.+||+|.+|+.+++++|++|-=.++
T Consensus        95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~---~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~  170 (198)
T TIGR01428        95 PDVPAGLRALKERGYRLAILSNGSPAMLKS---LVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLF  170 (198)
T ss_pred             CCHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEE
Confidence            34467777777778876 677766543221   11111133344432 3344456899999999999999988754333

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=94.12  E-value=0.016  Score=46.94  Aligned_cols=50  Identities=20%  Similarity=0.306  Sum_probs=38.8

Q ss_pred             cCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        42 ~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      +....++||+.++|+       +++++||+++..  +...++++|+... |+.|++++++
T Consensus        86 ~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~--~~~~l~~~~l~~~-fd~v~~~~~~  135 (175)
T TIGR01493        86 YKNLPPWPDSAAALA-------RVAILSNASHWA--FDQFAQQAGLPWY-FDRAFSVDTV  135 (175)
T ss_pred             HhcCCCCCchHHHHH-------HHhhhhCCCHHH--HHHHHHHCCCHHH-HhhhccHhhc
Confidence            345568999999998       378999987532  4567889999988 6888877754

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>PRK10671 copA copper exporting ATPase; Provisional

Probab=93.77  E-value=0.11  Score=52.96  Aligned_cols=100  Identities=18%  Similarity=0.203  Sum_probs=64.5

Q ss_pred             ccEEEEecccc----ccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHH
Q 025564           30 FKAWLLDQFGV----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY  105 (251)
Q Consensus        30 ~~~~l~D~DGv----L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~  105 (251)
                      ...+.+-.||.    +...+.+.||+.+.|++|++.|++++++|+.+...  ....++++|++.. +..+. +.+ ....
T Consensus       630 ~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~--a~~ia~~lgi~~~-~~~~~-p~~-K~~~  704 (834)
T PRK10671        630 ATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT--ANAIAKEAGIDEV-IAGVL-PDG-KAEA  704 (834)
T ss_pred             CeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHcCCCEE-EeCCC-HHH-HHHH
Confidence            44566666665    45677899999999999999999999999976432  4456678999765 44443 221 3334


Q ss_pred             HhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564          106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus       106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      +++....     |..+..+|.+..+...++..|+
T Consensus       705 i~~l~~~-----~~~v~~vGDg~nD~~al~~Agv  733 (834)
T PRK10671        705 IKRLQSQ-----GRQVAMVGDGINDAPALAQADV  733 (834)
T ss_pred             HHHHhhc-----CCEEEEEeCCHHHHHHHHhCCe
Confidence            4433221     4677777865433334555544

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=93.60  E-value=0.031  Score=48.93  Aligned_cols=70  Identities=16%  Similarity=0.204  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ......++.+..+|.++ |+||........   .+..-.+...+... +.+....+||+|.+|..+++++|+.+-
T Consensus       112 pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~---~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~  183 (260)
T PLN03243        112 PGSREFVQALKKHEIPIAVASTRPRRYLER---AIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPE  183 (260)
T ss_pred             CCHHHHHHHHHHCCCEEEEEeCcCHHHHHH---HHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChH
Confidence            34467777777788886 667765432221   11111233445542 455556799999999999999999874

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=93.52  E-value=0.046  Score=47.22  Aligned_cols=68  Identities=18%  Similarity=0.046  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      .+...++++.++|.++ |+||........   .+..-.+...+... +.+....+||+|.+|+.+++++++++
T Consensus       112 gv~e~L~~L~~~g~~l~I~Tn~~~~~~~~---~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~  181 (248)
T PLN02770        112 GLYKLKKWIEDRGLKRAAVTNAPRENAEL---MISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSK  181 (248)
T ss_pred             cHHHHHHHHHHcCCeEEEEeCCCHHHHHH---HHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCCh
Confidence            3466777766788886 777765543221   11111123334432 44444568999999999999999876

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=93.51  E-value=0.1  Score=43.11  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .++||+.++|+.++++|.+++++||+....  +...++++|++..
T Consensus        87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~--v~~~~~~lg~~~~  129 (202)
T TIGR01490        87 ILYPEARDLIRWHKAEGHTIVLVSASLTIL--VKPLARILGIDNA  129 (202)
T ss_pred             hccHHHHHHHHHHHHCCCEEEEEeCCcHHH--HHHHHHHcCCcce
Confidence            578999999999999999999999987432  4455677888754

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=93.31  E-value=0.11  Score=44.30  Aligned_cols=42  Identities=26%  Similarity=0.329  Sum_probs=28.9

Q ss_pred             HHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           54 TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        54 ~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      +|-.|++++  .++.||+.+..  ..+.|+++|++.- |+.|+.-+.
T Consensus       108 lLL~l~~r~--k~~FTNa~k~H--A~r~Lk~LGieDc-Fegii~~e~  149 (244)
T KOG3109|consen  108 LLLSLKKRR--KWIFTNAYKVH--AIRILKKLGIEDC-FEGIICFET  149 (244)
T ss_pred             HHHhCcccc--EEEecCCcHHH--HHHHHHHhChHHh-ccceeEeec
Confidence            444444332  78889988643  4478999999998 787776553

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=93.16  E-value=0.062  Score=43.34  Aligned_cols=74  Identities=19%  Similarity=0.135  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL  249 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~  249 (251)
                      +.+...++.+.++|.++ ++||..... . .  ....-.+...++. ........+||+|.+|+.+++++++++-=.+++
T Consensus        88 ~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~-~--~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v  163 (183)
T TIGR01509        88 PGVEPLLEALRARGKKLALLTNSPRDH-A-V--LVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV  163 (183)
T ss_pred             cCHHHHHHHHHHCCCeEEEEeCCchHH-H-H--HHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence            34466777766778775 677766543 1 1  0000112223333 123334578999999999999999876545544

HAD subfamilies caused by an overly broad single model.

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=93.13  E-value=0.28  Score=50.25  Aligned_cols=60  Identities=18%  Similarity=0.442  Sum_probs=46.2

Q ss_pred             cccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           38 FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        38 DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      =|.+.-.+++.||+.++++.|+++|+++.++|+....+  .....+++|+... ++.++++.+
T Consensus       520 lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~t--A~~ia~~~Gi~~~-~~~~v~g~~  579 (884)
T TIGR01522       520 LGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQET--AVSIARRLGMPSK-TSQSVSGEK  579 (884)
T ss_pred             EEEEeccCcchhHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCCCC-CCceeEhHH
Confidence            36677788999999999999999999999999987433  3345577899765 355655543

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=92.95  E-value=0.065  Score=45.19  Aligned_cols=69  Identities=20%  Similarity=0.267  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      +.+...++.+.++|.++ +++|........   .+....+...+... +.+....|||+|.+|+.+++++|+.+
T Consensus        95 ~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~---~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  165 (222)
T PRK10826         95 PGVREALALCKAQGLKIGLASASPLHMLEA---VLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDP  165 (222)
T ss_pred             CCHHHHHHHHHHCCCeEEEEeCCcHHHHHH---HHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCH
Confidence            45577777777789886 556644332211   11112233333332 33444579999999999999999976

>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway

Probab=92.86  E-value=0.3  Score=44.80  Aligned_cols=55  Identities=16%  Similarity=0.161  Sum_probs=39.8

Q ss_pred             CccEEEEeccccccCCCccCc---cHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhH
Q 025564           29 RFKAWLLDQFGVLHDGKKPYP---GAISTLEMLATTGAKMVVISNSSR-RASTTIDKLK   83 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~p---Ga~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~   83 (251)
                      +.+.+-||-|+|||....-+.   -+..-|-.|-++|++++|+|.++- ..+.+.++|.
T Consensus       146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~  204 (408)
T PF06437_consen  146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLH  204 (408)
T ss_pred             CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHH
Confidence            457999999999998765542   333444455678999999999873 4455777765

; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=92.83  E-value=0.078  Score=44.42  Aligned_cols=70  Identities=10%  Similarity=0.002  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      +.....++.+.++|.++ ++||.+......   .+..-.+...++.. +......+||+|.+|+.+++++|+++-
T Consensus        97 ~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~  168 (221)
T TIGR02253        97 PGVRDTLMELRESGYRLGIITDGLPVKQWE---KLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPE  168 (221)
T ss_pred             CCHHHHHHHHHHCCCEEEEEeCCchHHHHH---HHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChh
Confidence            34567777777778875 667766432211   11111233444432 344455689999999999999998763

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PLN02811 hydrolase

Probab=92.75  E-value=0.13  Score=43.44  Aligned_cols=71  Identities=18%  Similarity=0.198  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCC--eEEecCCCHHHHHHHHHhcC---CceE
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGE--VRWMGKPDKVVQLLCSLSSS---VIIL  244 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~--~~~~GKP~~~~~~~a~~~l~---~~~~  244 (251)
                      +.....++.+.++|.++ |+||.........  ....+.+...+... +..  ....+||+|.+|..++++++   +++-
T Consensus        81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~--~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~  158 (220)
T PLN02811         81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLK--TQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPG  158 (220)
T ss_pred             ccHHHHHHHHHHCCCcEEEEeCCchhhHHHH--HcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCcc
Confidence            44577777777788887 5566543211100  12223344444442 344  45578999999999999996   7653

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=92.75  E-value=0.051  Score=46.31  Aligned_cols=69  Identities=12%  Similarity=0.048  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .....++.+.++|.++ ++||........   .+..-.+...++.. +......+||+|.+|+.+++++|++|-
T Consensus        97 g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~---~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~  167 (224)
T PRK14988         97 DTVPFLEALKASGKRRILLTNAHPHNLAV---KLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAE  167 (224)
T ss_pred             CHHHHHHHHHhCCCeEEEEeCcCHHHHHH---HHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChH
Confidence            3466777777788875 667744322111   12211233444432 334445689999999999999999874

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=92.62  E-value=0.22  Score=50.08  Aligned_cols=96  Identities=13%  Similarity=0.041  Sum_probs=60.0

Q ss_pred             ccEEEEeccc----cccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHH
Q 025564           30 FKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY  105 (251)
Q Consensus        30 ~~~~l~D~DG----vL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~  105 (251)
                      ...+.+=.||    .+.-.+++.||+.++|++|+++|++++++|+.....  .....+++|++.. ++  .++. -...+
T Consensus       548 ~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~--a~~ia~~lgi~~~-~~--~~p~-~K~~~  621 (741)
T PRK11033        548 KTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRA--AAAIAGELGIDFR-AG--LLPE-DKVKA  621 (741)
T ss_pred             CEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCCee-cC--CCHH-HHHHH
Confidence            4556665555    445678899999999999999999999999976432  4456678999744 22  2222 23334


Q ss_pred             HhccCchhhhhcCCeEEEeccCCcccccccCC
Q 025564          106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGL  137 (251)
Q Consensus       106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~  137 (251)
                      +++...      +..+..+|.|..+...++..
T Consensus       622 v~~l~~------~~~v~mvGDgiNDapAl~~A  647 (741)
T PRK11033        622 VTELNQ------HAPLAMVGDGINDAPAMKAA  647 (741)
T ss_pred             HHHHhc------CCCEEEEECCHHhHHHHHhC
Confidence            444332      23566667543322344333

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=92.45  E-value=0.088  Score=48.68  Aligned_cols=72  Identities=21%  Similarity=0.244  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLI  247 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~  247 (251)
                      .....++.+.++|.++ |+||........   .+..-.+...+... +.+....+||+|.+|..+++++|+++-=.|
T Consensus       220 Ga~ElL~~Lk~~GiklaIaSn~~~~~~~~---~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl  293 (381)
T PLN02575        220 GSQEFVNVLMNYKIPMALVSTRPRKTLEN---AIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI  293 (381)
T ss_pred             CHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence            3467777777789886 666655433221   12222234455543 555556799999999999999998775333

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=92.25  E-value=0.28  Score=41.43  Aligned_cols=28  Identities=21%  Similarity=0.405  Sum_probs=25.2

Q ss_pred             ccCccHHHHHH-HHHHCCCeEEEEeCCCC
Q 025564           46 KPYPGAISTLE-MLATTGAKMVVISNSSR   73 (251)
Q Consensus        46 ~~~pGa~e~L~-~L~~~G~~v~ivTN~s~   73 (251)
                      .++||+.+.|+ .++++|.+++|+||+.+
T Consensus        94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~  122 (210)
T TIGR01545        94 TAFPLVAERLRQYLESSDADIWLITGSPQ  122 (210)
T ss_pred             CCCccHHHHHHHHHHhCCCEEEEEcCCcH
Confidence            57899999996 88999999999999874

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=92.02  E-value=0.42  Score=42.05  Aligned_cols=53  Identities=25%  Similarity=0.202  Sum_probs=38.3

Q ss_pred             CccEEEEeccccccCCC------ccCccHHHHHHHHHHCCC-eEEEEeCCCCCchhHHHHhH
Q 025564           29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLK   83 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~------~~~pGa~e~L~~L~~~G~-~v~ivTN~s~~~~~~~~~L~   83 (251)
                      +..++++|.||||....      .+-++..++|+.|.++.. -++|+|..+  .+++...+.
T Consensus        17 ~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~--~~~l~~~~~   76 (266)
T COG1877          17 RKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRS--LAELERLFG   76 (266)
T ss_pred             cceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCC--HHHHHHhcC
Confidence            55799999999998643      456888999999988744 577888544  444444443

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=91.72  E-value=0.12  Score=43.35  Aligned_cols=66  Identities=15%  Similarity=0.045  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHH--HHHHHh-CCCeEEecCCCHHHHHHHHHhcCCc
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLA--SKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVI  242 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~--~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~  242 (251)
                      ....++.+..+|.++ ++||........   .+..-.+.  ..+... +......+||+|.+|+.+++++++.
T Consensus        92 ~~~~L~~L~~~g~~~~ivT~~~~~~~~~---~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~  161 (220)
T TIGR03351        92 AEEAFRSLRSSGIKVALTTGFDRDTAER---LLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQ  161 (220)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCchHHHHH---HHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCC
Confidence            366777766778875 666655432211   11111122  223322 3344456899999999999999985

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=91.61  E-value=0.29  Score=48.87  Aligned_cols=113  Identities=20%  Similarity=0.269  Sum_probs=71.7

Q ss_pred             EEEEecccc----ccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHh
Q 025564           32 AWLLDQFGV----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (251)
Q Consensus        32 ~~l~D~DGv----L~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~  107 (251)
                      .+++-.||.    +.-.+++.|++.+++++|+++|+++.++|.-.+..  .+..-+++|++.. +.++...+.  .+.++
T Consensus       519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~--A~~iA~~lGId~v-~AellPedK--~~~V~  593 (713)
T COG2217         519 VVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRT--AEAIAKELGIDEV-RAELLPEDK--AEIVR  593 (713)
T ss_pred             EEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHcChHhh-eccCCcHHH--HHHHH
Confidence            588888883    45688999999999999999999999999866433  2344467899766 345443332  33444


Q ss_pred             ccCchhhhhcCCeEEEeccCCcccccc--cCCCceecC----CCCCccEEEEe
Q 025564          108 RRDDAWFAALGRSCIHMTWSDRGAISL--EGLGLKVVE----NVEEADFILAH  154 (251)
Q Consensus       108 ~~~~~~~~~~g~~~~~~g~~~~~~~~l--~~~g~~~~~----~~~~~~~Vvv~  154 (251)
                      +....     |+++..+|.|......|  .+.|+..-.    ..+-+|+|++.
T Consensus       594 ~l~~~-----g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~  641 (713)
T COG2217         594 ELQAE-----GRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMR  641 (713)
T ss_pred             HHHhc-----CCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEec
Confidence            43322     57787778654222233  333443211    13567888874

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=91.40  E-value=0.44  Score=48.30  Aligned_cols=53  Identities=21%  Similarity=0.255  Sum_probs=39.8

Q ss_pred             ccEEEEeccccccCC---------CccCccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHh
Q 025564           30 FKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKS   84 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g---------~~~~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~   84 (251)
                      -.+++||.||||..-         ..+-|+..++|++|.+. +-.++|+|+.+  .+.+.+.|..
T Consensus       507 ~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~--~~~L~~~~~~  569 (797)
T PLN03063        507 NRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSG--KDILDKNFGE  569 (797)
T ss_pred             CeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCC--HHHHHHHhCC
Confidence            368999999999853         23567899999999765 67899999754  4456566644

>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]

Probab=91.37  E-value=0.48  Score=46.27  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=50.5

Q ss_pred             cEEEEeccccccCCC-----------cc-CccHHHHHHHHHHCCCeEEEEeCCCC----CchhHHHHhHhCCCCCcccc-
Q 025564           31 KAWLLDQFGVLHDGK-----------KP-YPGAISTLEMLATTGAKMVVISNSSR----RASTTIDKLKSLGFDPSLFA-   93 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~-----------~~-~pGa~e~L~~L~~~G~~v~ivTN~s~----~~~~~~~~L~~~Gl~~~~~~-   93 (251)
                      +.|+-|+||||+..+           .+ .-|+.++..+.+++||++.++|..+-    .+..+.+-++.-|-.... . 
T Consensus       531 kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPd-GP  609 (738)
T KOG2116|consen  531 KIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPD-GP  609 (738)
T ss_pred             cEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCC-CC
Confidence            689999999999754           22 46999999999999999999998652    234566666666655442 3 


Q ss_pred             ceeechhhHH
Q 025564           94 GAITSGELTH  103 (251)
Q Consensus        94 ~Iits~~~~~  103 (251)
                      -|++++...+
T Consensus       610 ViLSPd~lf~  619 (738)
T KOG2116|consen  610 VILSPDSLFA  619 (738)
T ss_pred             EEeCCCcchH
Confidence            3444444333

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=90.97  E-value=0.49  Score=37.38  Aligned_cols=75  Identities=16%  Similarity=0.008  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCc---eeeCchHHHHHHHHhCCC-------------eEEecCCCHHHHH
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARA---LRVMPGTLASKFEKLGGE-------------VRWMGKPDKVVQL  233 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~---~~~~~G~i~~~~~~~g~~-------------~~~~GKP~~~~~~  233 (251)
                      |+....+++++.++|.++ ++||.+........   ...-.-.+...++..+-.             .....||+|.+|+
T Consensus        29 ~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~  108 (147)
T TIGR01656        29 RPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLIL  108 (147)
T ss_pred             cCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHH
Confidence            345577888877889886 67787543111000   000001122233333321             1123699999999


Q ss_pred             HHHHhcCCceEE
Q 025564          234 LCSLSSSVIILF  245 (251)
Q Consensus       234 ~a~~~l~~~~~~  245 (251)
                      .+++++++++--
T Consensus       109 ~~~~~~~~~~~e  120 (147)
T TIGR01656       109 EALKRLGVDASR  120 (147)
T ss_pred             HHHHHcCCChHH
Confidence            999999988743

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=90.93  E-value=0.34  Score=41.51  Aligned_cols=68  Identities=19%  Similarity=0.072  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564          172 QDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI  247 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~  247 (251)
                      +.....++.+..+....++||.+...        ..-.+...++.. +.+..-.+||+|.+|+.+++++|+.+  ..||
T Consensus       116 ~gv~~~L~~L~~~~~l~i~Tn~~~~~--------~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V  186 (238)
T PRK10748        116 QATHDTLKQLAKKWPLVAITNGNAQP--------ELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV  186 (238)
T ss_pred             ccHHHHHHHHHcCCCEEEEECCCchH--------HHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence            34566777654443334777855431        111234455542 44444578999999999999999877  4444

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=90.93  E-value=0.27  Score=41.20  Aligned_cols=72  Identities=18%  Similarity=0.075  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhCCCc-EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564          173 DLEKILEICASKKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIF  248 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~-li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~  248 (251)
                      .....++.+..+ .+ .+.||.........  .-..| +...+... .....-+.||+|.+|+.+++++|++|-=.+|
T Consensus       103 ~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~--l~~~g-l~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~  176 (229)
T COG1011         103 EALEALKELGKK-YKLGILTNGARPHQERK--LRQLG-LLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF  176 (229)
T ss_pred             hHHHHHHHHHhh-ccEEEEeCCChHHHHHH--HHHcC-ChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence            334455543333 44 47788543222211  11233 55666652 3334447799999999999999998643333

>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=90.86  E-value=0.28  Score=42.37  Aligned_cols=66  Identities=26%  Similarity=0.243  Sum_probs=48.1

Q ss_pred             EEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH
Q 025564           32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH  103 (251)
Q Consensus        32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~  103 (251)
                      .-.||-.+  -..-...++..++++.||++|..+.++||-...   +...+..+|+..+ |+.++.|.++-.
T Consensus       101 ~~~~s~~~--~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r---~~~~l~~~~l~~~-fD~vv~S~e~g~  166 (237)
T KOG3085|consen  101 FRLFSTFA--PSAWKYLDGMQELLQKLRKKGTILGIISNFDDR---LRLLLLPLGLSAY-FDFVVESCEVGL  166 (237)
T ss_pred             hheecccc--ccCceeccHHHHHHHHHHhCCeEEEEecCCcHH---HHHHhhccCHHHh-hhhhhhhhhhcc
Confidence            44455444  223456789999999999999888888886532   3356678999877 799999887554

>PRK11590 hypothetical protein; Provisional

Probab=90.74  E-value=0.24  Score=41.63  Aligned_cols=31  Identities=23%  Similarity=0.124  Sum_probs=20.4

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHH-HHCCC
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEML-ATTGA   63 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L-~~~G~   63 (251)
                      .-+.++||+||||+.+.    -...++..+ ++.|+
T Consensus         5 ~~k~~iFD~DGTL~~~d----~~~~~~~~~~~~~g~   36 (211)
T PRK11590          5 ERRVVFFDLDGTLHQQD----MFGSFLRYLLRRQPL   36 (211)
T ss_pred             cceEEEEecCCCCcccc----hHHHHHHHHHHhcch
Confidence            35799999999999443    334445555 55553

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=90.66  E-value=0.58  Score=48.10  Aligned_cols=55  Identities=18%  Similarity=0.208  Sum_probs=40.0

Q ss_pred             ccEEEEeccccccCC---------------CccCccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHhCC
Q 025564           30 FKAWLLDQFGVLHDG---------------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLG   86 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g---------------~~~~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~~G   86 (251)
                      -.+++||.||||..-               ..+-|+..++|+.|.+. +-.++|+|+.+  .+.+.+.|...+
T Consensus       591 ~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~--~~~Le~~fg~~~  661 (934)
T PLN03064        591 NRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD--RSVLDENFGEFD  661 (934)
T ss_pred             ceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhCCCC
Confidence            468999999999852               12457889999999775 67899999755  444556665433

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=90.63  E-value=0.45  Score=47.29  Aligned_cols=99  Identities=15%  Similarity=0.113  Sum_probs=61.3

Q ss_pred             ccEEEEe----ccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHH
Q 025564           30 FKAWLLD----QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY  105 (251)
Q Consensus        30 ~~~~l~D----~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~  105 (251)
                      ...+.+-    +-|++.-.+.+.||+.+.+++|++.|++++++|......  ....-+++|++.. +.+ .++. -...+
T Consensus       426 ~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~t--a~~iA~~lGI~~v-~a~-~~Pe-dK~~~  500 (675)
T TIGR01497       426 GTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLT--AAAIAAEAGVDDF-IAE-ATPE-DKIAL  500 (675)
T ss_pred             CeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCCEE-EcC-CCHH-HHHHH
Confidence            3445543    446667788999999999999999999999999865322  3355567899754 232 2222 23344


Q ss_pred             HhccCchhhhhcCCeEEEeccCCcccccccCCC
Q 025564          106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLG  138 (251)
Q Consensus       106 L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g  138 (251)
                      +++....     |..+..+|.|......|+..+
T Consensus       501 v~~lq~~-----g~~VamvGDG~NDapAL~~Ad  528 (675)
T TIGR01497       501 IRQEQAE-----GKLVAMTGDGTNDAPALAQAD  528 (675)
T ss_pred             HHHHHHc-----CCeEEEECCCcchHHHHHhCC
Confidence            4433211     556777776543333454443

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=90.57  E-value=0.2  Score=42.80  Aligned_cols=78  Identities=13%  Similarity=0.005  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL  249 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~  249 (251)
                      |+....+++.+.++|.++ |+||.+.......-...+.|.+...+...- ....-+||+|.+|..+++++|++|-=.+|+
T Consensus        97 ypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~f-d~~~g~KP~p~~y~~i~~~lgv~p~e~lfV  175 (220)
T TIGR01691        97 YPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYF-DTTVGLKTEAQSYVKIAGQLGSPPREILFL  175 (220)
T ss_pred             CcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEE-EeCcccCCCHHHHHHHHHHhCcChhHEEEE
Confidence            455677888877889876 667765432111000111223333333210 112347999999999999999988555554

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=90.53  E-value=0.27  Score=38.67  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      +...++.+.++|.++ ++||.+......   ..... +...+... +..... +||+|.+|+.+++++++++
T Consensus        69 ~~e~l~~L~~~g~~~~i~T~~~~~~~~~---~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~  135 (154)
T TIGR01549        69 AADLLKRLKEAGIKLGIISNGSLRAQKL---LLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP  135 (154)
T ss_pred             HHHHHHHHHHCcCeEEEEeCCchHHHHH---HHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC
Confidence            366666666778775 667766543221   11111 22233322 333344 8999999999999999976

HAD subfamilies caused by an overly broad single model.

>COG4850 Uncharacterized conserved protein [Function unknown]

Probab=90.30  E-value=0.61  Score=42.00  Aligned_cols=66  Identities=18%  Similarity=0.161  Sum_probs=50.6

Q ss_pred             HHHhcccCcc-EEEEeccccccC-------------------CCccCccHHHHHHHHHHCC-CeEEEEeCCCC-CchhHH
Q 025564           22 RHIAETRRFK-AWLLDQFGVLHD-------------------GKKPYPGAISTLEMLATTG-AKMVVISNSSR-RASTTI   79 (251)
Q Consensus        22 ~~~~~~~~~~-~~l~D~DGvL~~-------------------g~~~~pGa~e~L~~L~~~G-~~v~ivTN~s~-~~~~~~   79 (251)
                      ...++  ++. +++-|+|-|+..                   ...++||+..+.+.|.+.| -++.++||++. .-..+.
T Consensus       154 ~~v~~--~a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~  231 (373)
T COG4850         154 VPVLN--RAGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQ  231 (373)
T ss_pred             ceeec--ccceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHH
Confidence            34555  554 799999999875                   2368999999999999998 89999999985 334466


Q ss_pred             HHhHhCCCCC
Q 025564           80 DKLKSLGFDP   89 (251)
Q Consensus        80 ~~L~~~Gl~~   89 (251)
                      +.+..-+|+.
T Consensus       232 efi~~~~~P~  241 (373)
T COG4850         232 EFITNRNFPY  241 (373)
T ss_pred             HHHhcCCCCC
Confidence            6666666664

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=90.14  E-value=0.81  Score=37.02  Aligned_cols=76  Identities=13%  Similarity=-0.018  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCc--eeeCch-HHHHHHHHhCCC--eEE-----------ecCCCHHHHHH
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARA--LRVMPG-TLASKFEKLGGE--VRW-----------MGKPDKVVQLL  234 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~--~~~~~G-~i~~~~~~~g~~--~~~-----------~GKP~~~~~~~  234 (251)
                      +....+++++.++|.++ |+||.+-.......  ....+. .+...++..|-.  ..+           ..||+|.+|+.
T Consensus        32 pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~~~~  111 (161)
T TIGR01261        32 KGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKLLEP  111 (161)
T ss_pred             CCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHHHHH
Confidence            44567788877788885 77786422111100  011111 234444443332  122           34999999999


Q ss_pred             HHHhcCCce--EEEE
Q 025564          235 CSLSSSVII--LFLI  247 (251)
Q Consensus       235 a~~~l~~~~--~~~~  247 (251)
                      +++++++.+  .+||
T Consensus       112 ~~~~~~~~~~e~l~I  126 (161)
T TIGR01261       112 YLKKNLIDKARSYVI  126 (161)
T ss_pred             HHHHcCCCHHHeEEE
Confidence            999999876  5554

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=90.13  E-value=0.16  Score=42.17  Aligned_cols=69  Identities=10%  Similarity=0.004  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .....++.+.++|.++ ++||........   .+..-.+...+... +.+....+||+|.+|+.+++++++++-
T Consensus        79 g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~  149 (205)
T TIGR01454        79 GVPELLAELRADGVGTAIATGKSGPRARS---LLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPE  149 (205)
T ss_pred             CHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChh
Confidence            3466777777778765 667754332211   01100111222321 333345689999999999999998763

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=90.11  E-value=0.17  Score=41.67  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHhCC-CeEE----ecCCCHHHHHHHHHhcCCce
Q 025564          171 LQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKLGG-EVRW----MGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~-~~~~----~GKP~~~~~~~a~~~l~~~~  243 (251)
                      +++...+++.+.+.|.+++...-|......           +..+..|- +..+    .|||++.+|..++++|++++
T Consensus       129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~-----------~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~  195 (215)
T PF00702_consen  129 RPGAKEALQELKEAGIKVAILTGDNESTAS-----------AIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKP  195 (215)
T ss_dssp             HTTHHHHHHHHHHTTEEEEEEESSEHHHHH-----------HHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTG
T ss_pred             hhhhhhhhhhhhccCcceeeeecccccccc-----------ccccccccccccccccccccccchhHHHHHHHHhcCC
Confidence            456788888888889876554344332211           12222343 2111    17999999999999998654

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=89.93  E-value=0.84  Score=35.26  Aligned_cols=76  Identities=16%  Similarity=0.134  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccC-CccccccCceeeC-chH---HHHHHHHh-CCCeEEecCCCHHHHHHHHHhcC--C
Q 025564          171 LQDLEKILEICASKKIPM-VVANP-DYVTVEARALRVM-PGT---LASKFEKL-GGEVRWMGKPDKVVQLLCSLSSS--V  241 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~-D~~~~~~~~~~~~-~G~---i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~--~  241 (251)
                      |+.....++.+.++|.++ ++||. ...+....-...+ .|-   +...+... +..    .||.|.+|..+++++|  +
T Consensus        31 ~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~----~~pkp~~~~~a~~~lg~~~  106 (128)
T TIGR01681        31 IKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGY----WLPKSPRLVEIALKLNGVL  106 (128)
T ss_pred             HHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcC----CCcHHHHHHHHHHHhcCCC
Confidence            678888888877889886 56776 3433221100111 111   34445442 222    3699999999999999  9


Q ss_pred             ceEEEEeec
Q 025564          242 IILFLIFLD  250 (251)
Q Consensus       242 ~~~~~~~~~  250 (251)
                      .+-=.+++|
T Consensus       107 ~p~~~l~ig  115 (128)
T TIGR01681       107 KPKSILFVD  115 (128)
T ss_pred             CcceEEEEC
Confidence            887666653

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=89.80  E-value=0.51  Score=38.43  Aligned_cols=22  Identities=14%  Similarity=0.033  Sum_probs=19.1

Q ss_pred             ecCCCHHHHHHHHHhcCCceEE
Q 025564          224 MGKPDKVVQLLCSLSSSVIILF  245 (251)
Q Consensus       224 ~GKP~~~~~~~a~~~l~~~~~~  245 (251)
                      .+||+|.+|..+++++++.+-=
T Consensus       104 ~~KP~p~~~~~a~~~~~~~~~~  125 (176)
T TIGR00213       104 CRKPKPGMLLQARKELHIDMAQ  125 (176)
T ss_pred             CCCCCHHHHHHHHHHcCcChhh
Confidence            5799999999999999987633

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=89.61  E-value=1.2  Score=36.25  Aligned_cols=73  Identities=11%  Similarity=0.115  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCch----HHHHHHHHhCCC--------eEEecCCCHHHHHHHHH
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPG----TLASKFEKLGGE--------VRWMGKPDKVVQLLCSL  237 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G----~i~~~~~~~g~~--------~~~~GKP~~~~~~~a~~  237 (251)
                      |+....+++.+.++|.++ |+||.......    ....-    .+...++..|-.        .....||+|.+|+.+++
T Consensus        44 ~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~----~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~  119 (166)
T TIGR01664        44 YPEIPAKLQELDDEGYKIVIFTNQSGIGRG----KLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQS  119 (166)
T ss_pred             cCCHHHHHHHHHHCCCEEEEEeCCcccccC----cccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHH
Confidence            456678888877889886 66774432110    01111    123344443322        11357999999999999


Q ss_pred             hcC--Cce--EEEE
Q 025564          238 SSS--VII--LFLI  247 (251)
Q Consensus       238 ~l~--~~~--~~~~  247 (251)
                      +++  +++  .+||
T Consensus       120 ~~~~~~~~~~~v~V  133 (166)
T TIGR01664       120 QYNSPIKMTRSFYV  133 (166)
T ss_pred             HcCCCCCchhcEEE
Confidence            998  544  5555

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3

Probab=89.59  E-value=0.76  Score=40.15  Aligned_cols=77  Identities=18%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             EEEEeccccccCCC----------------------c-----cCccHHHHHHHHHHC------CCeEEEEeCCCC-Cchh
Q 025564           32 AWLLDQFGVLHDGK----------------------K-----PYPGAISTLEMLATT------GAKMVVISNSSR-RAST   77 (251)
Q Consensus        32 ~~l~D~DGvL~~g~----------------------~-----~~pGa~e~L~~L~~~------G~~v~ivTN~s~-~~~~   77 (251)
                      -|.||-|+||....                      .     |+....+.|.+|+++      -++++++|..+. ..+.
T Consensus       123 RIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~R  202 (264)
T PF06189_consen  123 RIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHER  202 (264)
T ss_pred             EEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHH
Confidence            58999999998632                      1     222333345555544      457899998663 3356


Q ss_pred             HHHHhHhCCCCCccccceeechhhHHHHHhccC
Q 025564           78 TIDKLKSLGFDPSLFAGAITSGELTHQYLLRRD  110 (251)
Q Consensus        78 ~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~  110 (251)
                      +.+-|+.+|+.+.  +..+.++.....+|+...
T Consensus       203 vI~TLr~Wgv~vD--EafFLgG~~K~~vL~~~~  233 (264)
T PF06189_consen  203 VIRTLRSWGVRVD--EAFFLGGLPKGPVLKAFR  233 (264)
T ss_pred             HHHHHHHcCCcHh--HHHHhCCCchhHHHHhhC
Confidence            7889999999987  577778877777777653

1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional

Probab=89.51  E-value=1.2  Score=40.83  Aligned_cols=49  Identities=16%  Similarity=0.204  Sum_probs=38.2

Q ss_pred             ccCCCcc--CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           41 LHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        41 L~~g~~~--~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      .+.|.+|  .|...++++++++.|+.+.+.||...-.++..+.|.+.|+..
T Consensus        67 ~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~  117 (378)
T PRK05301         67 HFSGGEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDH  117 (378)
T ss_pred             EEECCccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCE
Confidence            3445554  489999999999999999999998764555677888888763

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.47  E-value=0.64  Score=44.03  Aligned_cols=44  Identities=23%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             CccEEEEeccccccCCC-----------------ccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           29 RFKAWLLDQFGVLHDGK-----------------KPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~-----------------~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      ..++.++|+|+|||-|.                 .++-..++.+..|+++|.-.+++|-|.
T Consensus       221 ~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~  281 (574)
T COG3882         221 SKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNT  281 (574)
T ss_pred             ccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCc
Confidence            35899999999999753                 234445778999999999999999765

>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3

Probab=89.10  E-value=0.3  Score=41.71  Aligned_cols=39  Identities=28%  Similarity=0.301  Sum_probs=25.1

Q ss_pred             EEeccccccCC------CccCccHHHHHHHHHHCCC-eEEEEeCCC
Q 025564           34 LLDQFGVLHDG------KKPYPGAISTLEMLATTGA-KMVVISNSS   72 (251)
Q Consensus        34 l~D~DGvL~~g------~~~~pGa~e~L~~L~~~G~-~v~ivTN~s   72 (251)
                      ++|.||||..-      ..+.|++.++|++|.+... .++|+|+.+
T Consensus         1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~   46 (235)
T PF02358_consen    1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRS   46 (235)
T ss_dssp             EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred             CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence            68999999853      2567899999999987644 799999755

1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=89.09  E-value=1.9  Score=43.80  Aligned_cols=117  Identities=16%  Similarity=0.218  Sum_probs=74.0

Q ss_pred             cCccEEEEecccccc----CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH
Q 025564           28 RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH  103 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~----~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~  103 (251)
                      +..-++.+=+||.|.    -.+.+.|++..+++.|++.|++++.+|+..+.+  ....-++.|++.- +.++..++.  .
T Consensus       701 ~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a--A~svA~~VGi~~V-~aev~P~~K--~  775 (951)
T KOG0207|consen  701 KGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA--ARSVAQQVGIDNV-YAEVLPEQK--A  775 (951)
T ss_pred             cCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHH--HHHHHHhhCcceE-EeccCchhh--H
Confidence            356688888888876    477899999999999999999999999866433  2233356787765 355555443  3


Q ss_pred             HHHhccCchhhhhcCCeEEEeccCCcccc--cccCCCceecC----CCCCccEEEEe
Q 025564          104 QYLLRRDDAWFAALGRSCIHMTWSDRGAI--SLEGLGLKVVE----NVEEADFILAH  154 (251)
Q Consensus       104 ~~L~~~~~~~~~~~g~~~~~~g~~~~~~~--~l~~~g~~~~~----~~~~~~~Vvv~  154 (251)
                      +++++....     |..+..+|.|-..-.  ...+.|+.+-.    ..+.+|+|++.
T Consensus       776 ~~Ik~lq~~-----~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmr  827 (951)
T KOG0207|consen  776 EKIKEIQKN-----GGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMR  827 (951)
T ss_pred             HHHHHHHhc-----CCcEEEEeCCCCccHHHHhhccceeeccccHHHHhhCCEEEEc
Confidence            455544322     345666675432222  33445654422    13567777773

>COG0731 Fe-S oxidoreductases [Energy production and conversion]

Probab=88.80  E-value=1.2  Score=39.86  Aligned_cols=63  Identities=16%  Similarity=0.148  Sum_probs=45.8

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCC-CeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G-~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      +++.+.|=++|    .-.++|...|+++.+++.| ++++++||++.  .++   ++++.   . +++++-+-++..+
T Consensus        79 ~pd~vtis~~G----EPTLy~~L~elI~~~k~~g~~~tflvTNgsl--pdv---~~~L~---~-~dql~~sLdA~~~  142 (296)
T COG0731          79 EPDHVTISLSG----EPTLYPNLGELIEEIKKRGKKTTFLVTNGSL--PDV---LEELK---L-PDQLYVSLDAPDE  142 (296)
T ss_pred             CCCEEEEeCCC----CcccccCHHHHHHHHHhcCCceEEEEeCCCh--HHH---HHHhc---c-CCEEEEEeccCCH
Confidence            56677777777    6678999999999999999 79999999986  333   34444   2 2666666555444

>PRK09449 dUMP phosphatase; Provisional

Probab=88.47  E-value=0.37  Score=40.48  Aligned_cols=67  Identities=18%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCc
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVI  242 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~  242 (251)
                      ......++.+. +|.++ ++||........   .+..-.+...++.. +.......||+|.+|+.+++++|+.
T Consensus        98 ~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~---~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~  166 (224)
T PRK09449         98 PGAVELLNALR-GKVKMGIITNGFTELQQV---RLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNP  166 (224)
T ss_pred             ccHHHHHHHHH-hCCeEEEEeCCcHHHHHH---HHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCC
Confidence            34466777655 56665 677754322110   11111233344432 3344456899999999999999974

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=88.28  E-value=0.82  Score=45.46  Aligned_cols=81  Identities=14%  Similarity=0.125  Sum_probs=52.6

Q ss_pred             ccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhh
Q 025564           37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAA  116 (251)
Q Consensus        37 ~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~  116 (251)
                      +-|++.-.+.+.|++++.+++||+.|+++..+|.....+  ....-+++|++.. +.++ ++.+ ...+++.....    
T Consensus       432 ~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T--A~aIA~elGI~~v-~A~~-~Ped-K~~iV~~lQ~~----  502 (673)
T PRK14010        432 ILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELT--AATIAKEAGVDRF-VAEC-KPED-KINVIREEQAK----  502 (673)
T ss_pred             EEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCceE-EcCC-CHHH-HHHHHHHHHhC----
Confidence            345666778999999999999999999999999866432  3344467899754 3333 3333 33344432211    


Q ss_pred             cCCeEEEeccC
Q 025564          117 LGRSCIHMTWS  127 (251)
Q Consensus       117 ~g~~~~~~g~~  127 (251)
                       |+.|-..|.|
T Consensus       503 -G~~VaMtGDG  512 (673)
T PRK14010        503 -GHIVAMTGDG  512 (673)
T ss_pred             -CCEEEEECCC
Confidence             5566666654

>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]

Probab=88.11  E-value=1.2  Score=41.71  Aligned_cols=70  Identities=14%  Similarity=0.142  Sum_probs=48.7

Q ss_pred             CccEEEEeccccccCCCcc------------CccHHHHHHHHHHCCCeEEEEeCCCC----CchhHHHHhHhCCCCCccc
Q 025564           29 RFKAWLLDQFGVLHDGKKP------------YPGAISTLEMLATTGAKMVVISNSSR----RASTTIDKLKSLGFDPSLF   92 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~------------~pGa~e~L~~L~~~G~~v~ivTN~s~----~~~~~~~~L~~~Gl~~~~~   92 (251)
                      ..+.+++|+||||...+-+            .-|+..+.....+.|+++..+|..+-    +++.+....++-|..... 
T Consensus       374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpd-  452 (580)
T COG5083         374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPD-  452 (580)
T ss_pred             CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCC-
Confidence            5689999999999875422            36888888889999999999998762    233444445566665542 


Q ss_pred             cceeech
Q 025564           93 AGAITSG   99 (251)
Q Consensus        93 ~~Iits~   99 (251)
                      .-++.|-
T Consensus       453 gpviLsp  459 (580)
T COG5083         453 GPVILSP  459 (580)
T ss_pred             CCEeecc
Confidence            3344333

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=88.11  E-value=0.26  Score=41.88  Aligned_cols=69  Identities=16%  Similarity=0.099  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .....++.+.++|.++ ++||........   .+..-.+...+... +.+....+||+|.+|..+++++|+++-
T Consensus        99 g~~~~L~~L~~~g~~l~i~Tn~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~  169 (229)
T PRK13226         99 GVEGMLQRLECAGCVWGIVTNKPEYLARL---ILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPT  169 (229)
T ss_pred             CHHHHHHHHHHCCCeEEEECCCCHHHHHH---HHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChh
Confidence            3356676767778776 777764422110   01100112223332 334445689999999999999998774

>TIGR02886 spore_II_AA anti-sigma F factor antagonist

Probab=88.04  E-value=2.4  Score=31.13  Aligned_cols=67  Identities=12%  Similarity=0.124  Sum_probs=50.9

Q ss_pred             ChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        20 ~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .+.+.++..+.+.+++|+-+|=+-+..-+--..++.++++++|.++.++.=    ...+.+.|+..|+...
T Consensus        29 ~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~----~~~v~~~l~~~gl~~~   95 (106)
T TIGR02886        29 KIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNV----SPAVKRLFELSGLFKI   95 (106)
T ss_pred             HHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHhCCceE
Confidence            334444312468999999999998887777777889999999999987763    2346788888998765

The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=87.94  E-value=0.93  Score=45.12  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=63.8

Q ss_pred             ccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhh
Q 025564           37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAA  116 (251)
Q Consensus        37 ~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~  116 (251)
                      +-|++.-.+.+.||+.+.+++|+++|+++..+|.....+  ....-+++|++.. +.+ .++.+ ...++++....    
T Consensus       436 ~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T--A~aIA~elGId~v-~A~-~~Ped-K~~iV~~lQ~~----  506 (679)
T PRK01122        436 VLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLT--AAAIAAEAGVDDF-LAE-ATPED-KLALIRQEQAE----  506 (679)
T ss_pred             EEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCcEE-Ecc-CCHHH-HHHHHHHHHHc----
Confidence            446677788999999999999999999999999866433  2344456899754 222 23332 33344433211    


Q ss_pred             cCCeEEEeccCCcccccccCC--CceecC----CCCCccEEEE
Q 025564          117 LGRSCIHMTWSDRGAISLEGL--GLKVVE----NVEEADFILA  153 (251)
Q Consensus       117 ~g~~~~~~g~~~~~~~~l~~~--g~~~~~----~~~~~~~Vvv  153 (251)
                       |+.|-..|.|-.....|+..  |+..-.    .-+.+|.|++
T Consensus       507 -G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLl  548 (679)
T PRK01122        507 -GRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDL  548 (679)
T ss_pred             -CCeEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEe
Confidence             56666667553322244333  443321    0245666666

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=87.68  E-value=1.8  Score=33.08  Aligned_cols=70  Identities=16%  Similarity=0.119  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCCe---EE---ecCCCHHHHHHHHHhc-CCc
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEV---RW---MGKPDKVVQLLCSLSS-SVI  242 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~---~~---~GKP~~~~~~~a~~~l-~~~  242 (251)
                      |.....+++.+.++|.++ ++||........    .-.-.+.+.++..+...   .+   ..||+|.+|+.+++++ +++
T Consensus        27 ~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~  102 (132)
T TIGR01662        27 YPEVPDALAELKEAGYKVVIVTNQSGIGRGK----FSSGRVARRLEELGVPIDVLYACPHCRKPKPGMFLEALKRFNEID  102 (132)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEECCccccccH----HHHHHHHHHHHHCCCCEEEEEECCCCCCCChHHHHHHHHHcCCCC
Confidence            456677888877788886 556654322110    00112334444433321   12   4699999999999999 586


Q ss_pred             eE
Q 025564          243 IL  244 (251)
Q Consensus       243 ~~  244 (251)
                      +-
T Consensus       103 ~~  104 (132)
T TIGR01662       103 PE  104 (132)
T ss_pred             hh
Confidence            64

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=87.63  E-value=0.18  Score=40.55  Aligned_cols=57  Identities=16%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEE
Q 025564          188 MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLI  247 (251)
Q Consensus       188 li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~  247 (251)
                      .|+||.+......   .+..-.+...++.. +.+....+||+|.+|+.+++++|++|-=.+
T Consensus       103 ~i~Tn~~~~~~~~---~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l  160 (175)
T TIGR01493       103 AILSNASHWAFDQ---FAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVL  160 (175)
T ss_pred             hhhhCCCHHHHHH---HHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeE
Confidence            4677766544321   11111234445542 555556789999999999999999874333

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=87.41  E-value=0.48  Score=38.28  Aligned_cols=71  Identities=15%  Similarity=0.145  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI  247 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~  247 (251)
                      ......++.+.++|.++ ++||.....     ..+..-.+...+... +......+||+|.+|+.+++++++++  ..||
T Consensus        90 pg~~~~L~~L~~~g~~~~i~s~~~~~~-----~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~v  164 (185)
T TIGR01990        90 PGIKNLLDDLKKNNIKIALASASKNAP-----TVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGI  164 (185)
T ss_pred             ccHHHHHHHHHHCCCeEEEEeCCccHH-----HHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence            34466777777788887 455532110     011111122223321 33334568999999999999999875  4444

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=87.39  E-value=0.074  Score=42.00  Aligned_cols=74  Identities=19%  Similarity=0.203  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL  249 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~  249 (251)
                      .+..+++.+.++|.++ ++||.+.......   +..-.+...+... +....-..||+|.+|+.++++++++|-=++|+
T Consensus        81 ~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~---l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~v  156 (176)
T PF13419_consen   81 GVRELLERLKAKGIPLVIVSNGSRERIERV---LERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFV  156 (176)
T ss_dssp             THHHHHHHHHHTTSEEEEEESSEHHHHHHH---HHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEE
T ss_pred             hhhhhhhhcccccceeEEeecCCccccccc---ccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEE
Confidence            3466777766688887 5566654322110   0000011111111 12223347999999999999999887555544

...

>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]

Probab=86.96  E-value=1.8  Score=33.74  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=31.7

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      .++.+...|..|+++|+.++++||+..+ +-..+.|+.+.+..
T Consensus        45 fY~Di~rIL~dLk~~GVtl~~ASRt~ap-~iA~q~L~~fkvk~   86 (144)
T KOG4549|consen   45 FYDDIRRILVDLKKLGVTLIHASRTMAP-QIASQGLETFKVKQ   86 (144)
T ss_pred             eccchhHHHHHHHhcCcEEEEecCCCCH-HHHHHHHHHhccCc
Confidence            5799999999999999999999997642 22334566665553

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=86.81  E-value=0.27  Score=41.10  Aligned_cols=68  Identities=16%  Similarity=0.021  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ....+++.+.++|.++ |+||........   .+..-.+...+... +.+....+||+|.+|+.+++++++++
T Consensus        86 g~~~~l~~L~~~g~~~~i~S~~~~~~~~~---~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~  155 (214)
T PRK13288         86 TVYETLKTLKKQGYKLGIVTTKMRDTVEM---GLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKP  155 (214)
T ss_pred             CHHHHHHHHHHCCCeEEEEeCCCHHHHHH---HHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCH
Confidence            3466777766778876 567654321110   01111122223221 33334458999999999999999876

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=86.34  E-value=2.4  Score=35.32  Aligned_cols=40  Identities=15%  Similarity=0.147  Sum_probs=29.5

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCC
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG   86 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~G   86 (251)
                      ...-||.+++++.+++++.|++++|+....-  +...|++++
T Consensus        72 i~Idp~fKef~e~ike~di~fiVvSsGm~~f--I~~lfe~iv  111 (220)
T COG4359          72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPF--IYPLFEGIV  111 (220)
T ss_pred             cccCccHHHHHHHHHHcCCCEEEEeCCCchH--HHHHHHhhc
Confidence            3556899999999999999999999876432  334455544

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=86.33  E-value=0.27  Score=39.79  Aligned_cols=67  Identities=18%  Similarity=0.128  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .+...++.+.++|.++ ++||. ...   . ..+..-.+...++.. +......+||+|.+|+.+++++++++-
T Consensus        92 g~~~~l~~l~~~g~~i~i~S~~-~~~---~-~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~  160 (185)
T TIGR02009        92 GIENFLKRLKKKGIAVGLGSSS-KNA---D-RILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPN  160 (185)
T ss_pred             CHHHHHHHHHHcCCeEEEEeCc-hhH---H-HHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHH
Confidence            3456666666778887 44544 111   0 011111222333332 333344689999999999999998653

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function

Probab=86.20  E-value=2  Score=33.94  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=34.4

Q ss_pred             EEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCc
Q 025564           32 AWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRA   75 (251)
Q Consensus        32 ~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~   75 (251)
                      .-++|+||.+..-.. --..-.+.++.+.+.|+|++++|.-+..+
T Consensus        45 iAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P   89 (138)
T PF04312_consen   45 IAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPPP   89 (138)
T ss_pred             EEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCCc
Confidence            568999999876432 23467889999999999999999876443

>PRK11587 putative phosphatase; Provisional

Probab=86.18  E-value=0.26  Score=41.43  Aligned_cols=73  Identities=18%  Similarity=0.062  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVIILFLIF  248 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~  248 (251)
                      +.....++.+.++|.++ ++||.........-...+-..    +.. .+.+....+||+|.+|..+++++|++|-=.++
T Consensus        86 pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~----~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~  160 (218)
T PRK11587         86 PGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPA----PEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV  160 (218)
T ss_pred             cCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCC----ccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEE
Confidence            34467777777788886 667754321110000011000    111 12333446799999999999999997744333

>PLN02940 riboflavin kinase

Probab=86.17  E-value=0.47  Score=43.86  Aligned_cols=68  Identities=21%  Similarity=0.313  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeC-chHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVM-PGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~-~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      .....++.+.++|.++ |+||........   .+. .-.+...+... +.+....+||+|.+|..+++++++++
T Consensus        97 Gv~elL~~Lk~~g~~l~IvTn~~~~~~~~---~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p  167 (382)
T PLN02940         97 GANRLIKHLKSHGVPMALASNSPRANIEA---KISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEP  167 (382)
T ss_pred             CHHHHHHHHHHCCCcEEEEeCCcHHHHHH---HHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCCh
Confidence            3466777777788886 777764432110   111 11122333332 44445578999999999999999886

>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria

Probab=85.97  E-value=6.8  Score=33.75  Aligned_cols=70  Identities=16%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             ccCChHHHhcccCccEEEEeccccccCCCccCcc------HHHHHHHHHHCCCeEEEEeCCCC-C--ch---hHHHHhHh
Q 025564           17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPG------AISTLEMLATTGAKMVVISNSSR-R--AS---TTIDKLKS   84 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pG------a~e~L~~L~~~G~~v~ivTN~s~-~--~~---~~~~~L~~   84 (251)
                      ..+.+++++.  +.|..+..+++++.......++      -.+.++.|+..|+.++-+.||.. .  .+   +-.+.|++
T Consensus        26 ~~~~v~~~l~--~aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~  103 (250)
T PF09587_consen   26 IFEDVKPLLQ--SADLVVANLETPVTDSGQPASGYPHFNAPPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDK  103 (250)
T ss_pred             HHHHHHHHHh--hCCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHH
Confidence            3467788899  8899999999999877665554      46789999999999998888853 2  22   23456666


Q ss_pred             CCCC
Q 025564           85 LGFD   88 (251)
Q Consensus        85 ~Gl~   88 (251)
                      .|+.
T Consensus       104 ~gi~  107 (250)
T PF09587_consen  104 AGIP  107 (250)
T ss_pred             CCCc
Confidence            7765

Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].

>TIGR01686 FkbH FkbH-like domain

Probab=85.62  E-value=2.4  Score=38.05  Aligned_cols=76  Identities=11%  Similarity=0.011  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccC-ceeeCchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCceEEEEe
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEAR-ALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIF  248 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~-~~~~~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~  248 (251)
                      |..++..+..+.++|.++ ||+|.+......- ...++.=.+...+..    ...-.||.|..+..+++++++.+-=+||
T Consensus        33 ~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~----~~~~~~pk~~~i~~~~~~l~i~~~~~vf  108 (320)
T TIGR01686        33 HKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDA----RSINWGPKSESLRKIAKKLNLGTDSFLF  108 (320)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeE----EEEecCchHHHHHHHHHHhCCCcCcEEE
Confidence            788999999888899886 6777665322110 000000001111111    1223699999999999999988777777


Q ss_pred             ec
Q 025564          249 LD  250 (251)
Q Consensus       249 ~~  250 (251)
                      +|
T Consensus       109 id  110 (320)
T TIGR01686       109 ID  110 (320)
T ss_pred             EC
Confidence            65

The C-terminal portion of this domain is unique to this family (by BLAST).

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=85.08  E-value=1.2  Score=36.05  Aligned_cols=39  Identities=28%  Similarity=0.435  Sum_probs=30.1

Q ss_pred             ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        49 pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      |++.++|+.++++|.+++|+|.+..  .-+...++.+|++.
T Consensus        92 ~~~~e~i~~~~~~~~~v~IvS~~~~--~~i~~~~~~~~i~~  130 (192)
T PF12710_consen   92 PDAMELIRELKDNGIKVVIVSGSPD--EIIEPIAERLGIDD  130 (192)
T ss_dssp             TTHHHHHHHHHHTTSEEEEEEEEEH--HHHHHHHHHTTSSE
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHcCCCc
Confidence            5556999999999999999998753  22445556788875

>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists

Probab=84.29  E-value=1.2  Score=33.29  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=47.5

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      ++.+++|+.+|-+-+..-+.-..++.+.++++|.++.|+.-    ...+.+.|...|+...
T Consensus        48 ~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~----~~~v~~~l~~~~~~~~  104 (117)
T PF01740_consen   48 IKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGL----NPDVRRILERSGLIDF  104 (117)
T ss_dssp             SSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESH----HHHHHHHHHHTTGHHH
T ss_pred             ceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHcCCChh
Confidence            58999999999988888888889999999999999988773    2346677888888743

It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....

>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]

Probab=84.15  E-value=2  Score=36.31  Aligned_cols=40  Identities=23%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             cEEEEeccccccCCC-ccCccHHHHHHHHHHCCCeEEEEeCC
Q 025564           31 KAWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNS   71 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~-~~~pGa~e~L~~L~~~G~~v~ivTN~   71 (251)
                      -.++||+||||.... ...|...++|+.||+. ..+.++-.+
T Consensus        12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~lr~~-v~ig~Vggs   52 (252)
T KOG3189|consen   12 TLCLFDVDGTLTPPRQKVTPEMLEFLQKLRKK-VTIGFVGGS   52 (252)
T ss_pred             eEEEEecCCccccccccCCHHHHHHHHHHhhh-eEEEEeecH
Confidence            379999999998654 5678999999998764 566666654

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=84.07  E-value=0.51  Score=41.38  Aligned_cols=75  Identities=17%  Similarity=0.189  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL  249 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~  249 (251)
                      +.....++.+..+|.++ ++||........   .+..-.+...+... +.+....+||+|.+|+.+++++|+++--.+++
T Consensus       104 ~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~---~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~I  180 (272)
T PRK13223        104 PGVRDTLKWLKKQGVEMALITNKPERFVAP---LLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFV  180 (272)
T ss_pred             CCHHHHHHHHHHCCCeEEEEECCcHHHHHH---HHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEEE
Confidence            44566777766778775 566643321100   00000011222221 33333458999999999999999987555554

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=83.89  E-value=0.59  Score=40.66  Aligned_cols=66  Identities=9%  Similarity=0.067  Sum_probs=37.2

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHH-HHh-CCCeEEecCCCHHHHHHHHHhcCCc
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EKL-GGEVRWMGKPDKVVQLLCSLSSSVI  242 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~-~~~-g~~~~~~GKP~~~~~~~a~~~l~~~  242 (251)
                      ....++.+.++|.++ |+||........   .+..-.+...+ ... +.+....+||+|.+|..+++++|+.
T Consensus       106 ~~elL~~L~~~g~~l~I~T~~~~~~~~~---~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~  174 (267)
T PRK13478        106 VLEVIAALRARGIKIGSTTGYTREMMDV---VVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVY  174 (267)
T ss_pred             HHHHHHHHHHCCCEEEEEcCCcHHHHHH---HHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCC
Confidence            466677767788876 556544422110   00000011111 111 3344456899999999999999985

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E

Probab=83.79  E-value=1.2  Score=40.52  Aligned_cols=49  Identities=18%  Similarity=0.327  Sum_probs=38.2

Q ss_pred             cccCCCcc--CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           40 VLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        40 vL~~g~~~--~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      +.+.|.+|  .|+..++++.+++.|+.+.+.||...-.++..+.|.+.|+.
T Consensus        57 v~~~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~  107 (358)
T TIGR02109        57 LHFSGGEPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLD  107 (358)
T ss_pred             EEEeCccccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCC
Confidence            33455554  48999999999999999999999876555677788887765

This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.

>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation

Probab=83.57  E-value=3.9  Score=30.17  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=46.2

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      ..+.+++|+-||-+-...-+.-..++.+.++++|.++.++--+    .++.+.|+..|+..
T Consensus        40 ~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~----~~v~~~l~~~gl~~   96 (109)
T cd07041          40 RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIR----PEVAQTLVELGIDL   96 (109)
T ss_pred             CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCC----HHHHHHHHHhCCCh
Confidence            5789999999999988876666777888899999998887633    34678888899876

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=82.94  E-value=0.97  Score=37.62  Aligned_cols=73  Identities=18%  Similarity=0.101  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhCCCc-EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhc-CCceEEEEee
Q 025564          173 DLEKILEICASKKIP-MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSS-SVIILFLIFL  249 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~-li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l-~~~~~~~~~~  249 (251)
                      .....++.+.++ .+ .++||........   .+..-.+...+... +....-..||+|.+|+.+++++ ++++-=+||+
T Consensus       101 g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~---~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~i  176 (224)
T TIGR02254       101 GAFELMENLQQK-FRLYIVTNGVRETQYK---RLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMI  176 (224)
T ss_pred             cHHHHHHHHHhc-CcEEEEeCCchHHHHH---HHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEE
Confidence            345566665556 55 4667754322110   01111122233332 3344456799999999999999 9887444443

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]

Probab=82.65  E-value=4.8  Score=30.36  Aligned_cols=68  Identities=16%  Similarity=0.198  Sum_probs=51.2

Q ss_pred             CChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      +.+.+.+...+.+.+++|+.||=+.+.--.--...+++.++..|..++++..++    ++++.+...|++..
T Consensus        33 e~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p----~v~~~~~~~gl~~~  100 (117)
T COG1366          33 ETLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQP----EVARTLELTGLDKS  100 (117)
T ss_pred             HHHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCH----HHHHHHHHhCchhh
Confidence            344444442345669999999999888777666778889999999988888643    46678888999865

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=82.61  E-value=1.2  Score=36.12  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=25.1

Q ss_pred             HHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          210 LASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       210 i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      +...++.. +.+....+||+|.+|+.+++++++++
T Consensus       125 l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~  159 (188)
T PRK10725        125 LRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQP  159 (188)
T ss_pred             cHhHceEEEehhhccCCCCChHHHHHHHHHcCCCH
Confidence            33444442 44445578999999999999999876

>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation

Probab=82.58  E-value=4.1  Score=28.97  Aligned_cols=65  Identities=17%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             hHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        21 ~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      +.+..+ .+.+.+++|+.++=+-+...+--..++.+.++++|..+.+..-+    .++.+.|+..|+...
T Consensus        30 ~~~~~~-~~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~----~~~~~~l~~~gl~~~   94 (99)
T cd07043          30 LEELLA-EGPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVS----PAVRRVLELTGLDRL   94 (99)
T ss_pred             HHHHHH-cCCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCC----HHHHHHHHHhCccee
Confidence            444444 12589999999999888888888888999999999987766532    346678888888753

Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=82.44  E-value=1.1  Score=37.01  Aligned_cols=66  Identities=17%  Similarity=-0.009  Sum_probs=38.0

Q ss_pred             HHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          175 EKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       175 ~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ...++.+.++|.++ |+||........   .+..-.+...++.. +.+...- ||+|.+|..+++++++++-
T Consensus       112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~---~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~  179 (197)
T TIGR01548       112 KGLLRELHRAPKGMAVVTGRPRKDAAK---FLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEAC  179 (197)
T ss_pred             HHHHHHHHHcCCcEEEECCCCHHHHHH---HHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcc
Confidence            45666666678876 677765543221   01111122333332 3332223 9999999999999998864

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=82.27  E-value=1.4  Score=40.58  Aligned_cols=81  Identities=26%  Similarity=0.322  Sum_probs=54.1

Q ss_pred             CccEEEEeccccccCCC-------------ccCccHHHHHHHHHHCCCeEEEEeCCC---CCc-------hhHHHHhHhC
Q 025564           29 RFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSS---RRA-------STTIDKLKSL   85 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~-------------~~~pGa~e~L~~L~~~G~~v~ivTN~s---~~~-------~~~~~~L~~~   85 (251)
                      ..+.+.||+||||.+..             -.+|.+..=|+.|.+.|+.++|.||..   +..       ..+.....++
T Consensus        74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl  153 (422)
T KOG2134|consen   74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL  153 (422)
T ss_pred             CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc
Confidence            56889999999998743             346778888999999999999999975   211       1233445667


Q ss_pred             CCCCccccceee-----chhhHHHHHhcc
Q 025564           86 GFDPSLFAGAIT-----SGELTHQYLLRR  109 (251)
Q Consensus        86 Gl~~~~~~~Iit-----s~~~~~~~L~~~  109 (251)
                      |++...+..++-     +...+.+|+++.
T Consensus       154 ~vPi~~~~A~~~~~yRKP~tGMwe~~~~~  182 (422)
T KOG2134|consen  154 GVPIQLLAAIIKGKYRKPSTGMWEFLKRL  182 (422)
T ss_pred             CCceEEeeeccCCcccCcchhHHHHHHHH
Confidence            777542222222     234456666643

>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=82.25  E-value=3.3  Score=33.51  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=48.1

Q ss_pred             HHhcccCccEEEEeccccccC--CCccCccHHHHHHHHHHC-C-CeEEEEeCCCCC-----chhHHHHhH-hCCCCCc
Q 025564           23 HIAETRRFKAWLLDQFGVLHD--GKKPYPGAISTLEMLATT-G-AKMVVISNSSRR-----ASTTIDKLK-SLGFDPS   90 (251)
Q Consensus        23 ~~~~~~~~~~~l~D~DGvL~~--g~~~~pGa~e~L~~L~~~-G-~~v~ivTN~s~~-----~~~~~~~L~-~~Gl~~~   90 (251)
                      ++..+..+++++||=|.++.-  ....+|.-..-+++++.. | +.++++||+...     ..+.++.|+ +.|++..
T Consensus        36 ~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVl  113 (190)
T KOG2961|consen   36 EILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVL  113 (190)
T ss_pred             chhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceE
Confidence            444444799999999999985  445678888888888765 4 789999998532     123445553 4788764

>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH

Probab=81.81  E-value=6.4  Score=35.40  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=32.0

Q ss_pred             CCCcc--CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           43 DGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        43 ~g~~~--~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      .|.+|  .|...++++.++++|+.+.+.||.....+. ...+...|.
T Consensus        79 ~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~-~~~l~~~~~  124 (318)
T TIGR03470        79 PGGEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKK-LDKFEPSPY  124 (318)
T ss_pred             eCccccccccHHHHHHHHHHcCCeEEEecCceehHHH-HHHHHhCCC
Confidence            45554  489999999999999999999998754333 344555443

The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=81.74  E-value=1  Score=36.53  Aligned_cols=72  Identities=14%  Similarity=0.065  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEE----ecCCCHHHHHHHHHhcCCceEEE
Q 025564          172 QDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRW----MGKPDKVVQLLCSLSSSVIILFL  246 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~----~GKP~~~~~~~a~~~l~~~~~~~  246 (251)
                      +.+...++.+ + ....++||.........   +..-.+...+... +.+...    ..||+|.+|+.+++++|++|-=.
T Consensus        87 ~g~~~~L~~L-~-~~~~i~Tn~~~~~~~~~---l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~  161 (184)
T TIGR01993        87 PELRNLLLRL-P-GRKIIFTNGDRAHARRA---LNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPERA  161 (184)
T ss_pred             HHHHHHHHhC-C-CCEEEEeCCCHHHHHHH---HHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccce
Confidence            4456666653 2 44567777665422110   1110122233321 222222    25999999999999999887533


Q ss_pred             Ee
Q 025564          247 IF  248 (251)
Q Consensus       247 ~~  248 (251)
                      ++
T Consensus       162 l~  163 (184)
T TIGR01993       162 IF  163 (184)
T ss_pred             EE
Confidence            33

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=81.47  E-value=3.4  Score=33.81  Aligned_cols=49  Identities=22%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             ccccccCCCccC--ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           37 QFGVLHDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        37 ~DGvL~~g~~~~--pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      +.++.+.|.+|.  |...++++.+++.|+.+.+.||...  .+..+.+.+.|+
T Consensus        63 ~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~--~~~l~~l~~~g~  113 (191)
T TIGR02495        63 IDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN--PRVLEELLEEGL  113 (191)
T ss_pred             CCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC--HHHHHHHHhcCC
Confidence            455666676664  6788999999999999999999873  234455555663

This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.

>TIGR00377 ant_ant_sig anti-anti-sigma factor

Probab=80.24  E-value=4.9  Score=29.39  Aligned_cols=68  Identities=15%  Similarity=0.108  Sum_probs=49.9

Q ss_pred             CChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      +.+.+..+....+.+++|+.++=+-+..-+.-..++.+.++++|.++.++.-+    .++.+.|+..|+...
T Consensus        32 ~~l~~~~~~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~----~~~~~~l~~~~l~~~   99 (108)
T TIGR00377        32 EKVTPAAERTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVS----PRVARLLDITGLLRI   99 (108)
T ss_pred             HHHHHHHHhcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCC----HHHHHHHHHhChhhe
Confidence            34445544115789999999999888877777778888899999988777643    346677888888754

This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=80.14  E-value=5.9  Score=36.36  Aligned_cols=77  Identities=13%  Similarity=0.047  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCc-eeeC--chHHHHHHHHhCCC-------------eEEecCCCHHHHH
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARA-LRVM--PGTLASKFEKLGGE-------------VRWMGKPDKVVQL  233 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~-~~~~--~G~i~~~~~~~g~~-------------~~~~GKP~~~~~~  233 (251)
                      |+.+..+++++.++|.++ |+||.+-.-..... ..+.  ...+...++..+-.             ....+||+|.++.
T Consensus        32 ~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~~l~  111 (354)
T PRK05446         32 EPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTGLVE  111 (354)
T ss_pred             CcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHHHHH
Confidence            345577788777788886 77785321100000 0111  22333444433221             1236799999999


Q ss_pred             HHHHhcCCce--EEEE
Q 025564          234 LCSLSSSVII--LFLI  247 (251)
Q Consensus       234 ~a~~~l~~~~--~~~~  247 (251)
                      .+++++++.+  .+||
T Consensus       112 ~a~~~l~v~~~~svmI  127 (354)
T PRK05446        112 EYLAEGAIDLANSYVI  127 (354)
T ss_pred             HHHHHcCCCcccEEEE
Confidence            9999887754  5555

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=80.01  E-value=3.5  Score=42.71  Aligned_cols=59  Identities=14%  Similarity=0.131  Sum_probs=43.5

Q ss_pred             ccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        39 GvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      |.+.-.+++.|++.+++++|+++|+++.++|.....+  ....-+++|+.... ..++++.+
T Consensus       572 Gli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~t--A~~iA~~~GI~~~~-~~vi~G~~  630 (941)
T TIGR01517       572 GVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDT--AKAIARNCGILTFG-GLAMEGKE  630 (941)
T ss_pred             EEeeccCCCchhHHHHHHHHHHCCCEEEEECCCChHH--HHHHHHHcCCCCCC-ceEeeHHH
Confidence            6666778999999999999999999999999876433  22444568887542 44555543

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
2hx1_A	284	Crystal Structure Of Possible Sugar Phosphatase, Ha		2e-06
2cfr_A	298	Crystal Structure Of Human Pyridoxal 5'-Phosphate P		3e-05
2oyc_A	306	Crystal Structure Of Human Pyridoxal Phosphate Phos		3e-05
2cfs_A	298	Crystal Structure Of Human Pyridoxal 5'-Phosphate P		3e-05

>pdb|2HX1|A Chain A, Crystal Structure Of Possible Sugar Phosphatase, Had Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii Atcc 33406 At 2.10 A Resolution Length = 284

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTI-DKLKSLGF 87
           ++K    D FGVL       PG  +T + L   G    +++N + R+   + D    LG 
Sbjct: 13  KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 72
Query: 88  DPSLFAGAITSGELTHQYL-LRRDDAWFAALGR-SCIHMTWSDRGAISLEGLGLKVVE-- 143
                   I+SG +T +Y+ L+ D    A LG  +  +   SD     ++ L +  ++  
Sbjct: 73  FSITADKIISSGXITKEYIDLKVDGGIVAYLGTANSANYLVSD----GIKXLPVSAIDDS 128
Query: 144 NVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVT-VEARA 202
           N+ E + ++    EG              DL K + +   + IP +VAN D    +    
Sbjct: 129 NIGEVNALVLLDDEGFNW---------FHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTD 179
Query: 203 LRVMPGTLASKFEK-LGGEVRWMGKPD 228
           + +  G +A+  E  LG      GKPD
Sbjct: 180 VAIAIGGVATXIESILGRRFIRFGKPD 206

>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate Phosphatase Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 20  RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88  D----PSLFAGAITSGELTHQYL 106
                  LF+ A+ +  L  Q L
Sbjct: 80  GGLRAEQLFSSALCAARLLRQRL 102

>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 20  RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88  D----PSLFAGAITSGELTHQYL 106
                  LF+ A+ +  L  Q L
Sbjct: 80  GGLRAEQLFSSALCAARLLRQRL 102

>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate Phosphatase Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 20  RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88  D----PSLFAGAITSGELTHQYL 106
                  LF+ A+ +  L  Q L
Sbjct: 80  GGLRAEQLFSSALCAARLLRQRL 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	9e-15
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	9e-11
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	9e-10
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	1e-09
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	2e-09
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	2e-09
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	2e-09
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	3e-09
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	8e-09
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	9e-09
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	2e-08
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	2e-07
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	1e-06
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	4e-06
2zg6_A	220	Putative uncharacterized protein ST2620, probable	4e-06
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	6e-06
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	1e-05
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	1e-05
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	1e-05
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	3e-05
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	4e-05
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	1e-04
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	2e-04
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	4e-04
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	4e-04
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	4e-04
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	7e-04

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} Length = 284

 Score = 71.1 bits (175), Expect = 9e-15
 Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 16/218 (7%)

Query: 17  TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRA 75
            +   + +    ++K    D FGVL       PG  +T + L   G    +++N +SR  
Sbjct: 3   QIESFKSLLP--KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSP 60

Query: 76  STTIDKLKSLGFDPSLFAGAITSGELTHQYL-LRRDDAWFAALGRSCIHMTWSDRGAISL 134
               D    LG         I+SG +T +Y+ L+ D    A LG +         G I +
Sbjct: 61  EQLADSYHKLGLFSITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDG-IKM 119

Query: 135 EGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPD 194
             +      N+ E + ++    EG              DL K + +   + IP +VAN D
Sbjct: 120 LPVSAIDDSNIGEVNALVLLDDEGFNWF---------HDLNKTVNLLRKRTIPAIVANTD 170

Query: 195 YVT-VEARALRVMPGTLASKFEK-LGGEVRWMGKPDKV 230
               +    + +  G +A+  E  LG      GKPD  
Sbjct: 171 NTYPLTKTDVAIAIGGVATMIESILGRRFIRFGKPDSQ 208

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A Length = 259

 Score = 59.5 bits (145), Expect = 9e-11
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 25  AETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLK 83
           A  R  KA L+D  G LH      PGA   L+ L  T   +  ++N +       +++LK
Sbjct: 2   AARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLK 61

Query: 84  SLGFDPSLFAGA---ITSGELTHQYLLRRDDA 112
            L F+           TS       + ++   
Sbjct: 62  KLEFE----ISEDEIFTSLTAARNLIEQKQVR 89

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* Length = 306

 Score = 56.9 bits (138), Expect = 9e-10
 Identities = 41/191 (21%), Positives = 60/191 (31%), Gaps = 23/191 (12%)

Query: 28  RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLG 86
            R +  L D  GVL +G++  PGA   LE LA  G   + +SN S R       +   LG
Sbjct: 19  GRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLG 78

Query: 87  FDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVE 146
           F         +S     + L +R      A G   +         +  EGL       + 
Sbjct: 79  FGGLRAEQLFSSALCAARLLRQRLPGPPDAPGAVFV---------LGGEGL----RAELR 125

Query: 147 EADFILAHGTEGMGLPSGDV--------RPMSLQDLEKILEICASKKIPMVVANPDYVTV 198
            A   LA         +  V           S   L +        +  +V  + D    
Sbjct: 126 AAGLRLAGDPSAGDGAAPRVRAVLVGYDEHFSFAKLREACAHLRDPECLLVATDRDPWHP 185

Query: 199 EARALRVMPGT 209
            +      PGT
Sbjct: 186 LSDG-SRTPGT 195

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} Length = 266

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 28  RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLG 86
           + +K +L+D  G +++G +    A   +  L   G   + ++N SSR      DKL S  
Sbjct: 4   KTYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFD 63

Query: 87  FDPSLFAGA---ITSGELTHQYLLRR 109
                 A      T+   T Q++ ++
Sbjct: 64  IP----ATEEQVFTTSMATAQHIAQQ 85

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14 Length = 250

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 30  FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFD 88
            K  + D  GVL       PGA   L  +   G  +V+++N  S+      ++  + G D
Sbjct: 3   IKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVD 62

Query: 89  PSLFAGA---ITSGELTHQYLLRRDDA 112
                      TS   T  +L R++  
Sbjct: 63  ----VPDSVFYTSAMATADFLRRQEGK 85

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A Length = 264

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 27  TRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSL 85
           +  +K +L+D  G ++ GK   P     +E L   G   ++++N ++R   +  + L+  
Sbjct: 2   SLAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGF 61

Query: 86  GFDPSLFAGA---ITSGELTHQYLLRR 109
             +           T+   T  Y+   
Sbjct: 62  NVE----TPLETIYTATMATVDYMNDM 84

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A* Length = 271

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 28  RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLG 86
            + + ++LD  G  +      PG++  LE L     + V  +N SS  A   + KL+++G
Sbjct: 15  DKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMG 74

Query: 87  FDPSLFAGA---ITSGELTHQYLLRR 109
            D          +TSGE+T +++L+R
Sbjct: 75  VD----VPDDAVVTSGEITAEHMLKR 96

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} Length = 268

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 28  RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLG 86
              K +++D  GV+     P P  +  ++ L   G K++ +SN S+R     +++L+S G
Sbjct: 6   PDKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFG 65

Query: 87  FDPSLFAGA---ITSGELTHQYLLRR 109
            +     G    + +   T +++ R 
Sbjct: 66  LE----VGEDEILVATYATARFIARE 87

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens} Length = 271

 Score = 53.7 bits (130), Expect = 8e-09
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 28  RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKL 82
              +  LLD  GVL+     G     G++  +  L  +  K+   +N S+   +  + +L
Sbjct: 10  AGVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESAASRAELVGQL 69

Query: 83  KSLGFDPSLFAGA---ITSGELTHQYLLRRD 110
           + LGFD                  Q L  R 
Sbjct: 70  QRLGFD----ISEQEVTAPAPAACQILKERG 96

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} Length = 263

 Score = 53.7 bits (130), Expect = 9e-09
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 31  KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFDP 89
            A + D  GVL+ G +  PG    +E L   G     ++N S++      +KL  +G D 
Sbjct: 2   VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGID- 60

Query: 90  SLFAGA---ITSGELTHQYLLRR 109
                +   ITSG  T  Y+ + 
Sbjct: 61  ---VSSSIIITSGLATRLYMSKH 80

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A* Length = 352

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 38/251 (15%), Positives = 68/251 (27%), Gaps = 39/251 (15%)

Query: 18  LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRAS 76
           + G R    T +  A+  D  GVL  GKKP  GA   L++L       ++++N       
Sbjct: 1   MIGKRFFQTTSKKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSER 60

Query: 77  TTIDKL-KSLGFDPSLFAGAITSGELTHQYLLRRDDAWF-------AALGRSCIHMTWSD 128
              + +   L  D S     I S       + +                           
Sbjct: 61  ARTEFISSKLDVDVSP-LQIIQSHTPYKSLVNKYSRILAVGTPSVRGVAEGYGFQDVVHQ 119

Query: 129 RGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSL------QDLEKILEICA 182
              +             +E     +     +     D   +         D++ I +   
Sbjct: 120 TDIVRYNRDIAPFSGLSDEQVMEYSRDIPDLTTKKFDAVLVFNDPHDWAADIQIISDAIN 179

Query: 183 S---------------KKIPMVVANPDYVTVEAR--------ALRVMPGTLASKFEKLGG 219
           S                 IP+  +N D +             A R++   L  +      
Sbjct: 180 SENGMLNTLRNEKSGKPSIPIYFSNQDLLWANPYKLNRFGQGAFRLLVRRLYLELNGEPL 239

Query: 220 EVRWMGKPDKV 230
           +   +GKP K+
Sbjct: 240 QDYTLGKPTKL 250

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14 Length = 264

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 27  TRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKL-KS 84
           +  ++ +L+D  G ++ GK+P P     +E L       + ++N +++   T   +L   
Sbjct: 2   SLDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANE 61

Query: 85  LGFDPSLFAGA---ITSGELTHQYLLRR 109
                     A    T+   T  Y+   
Sbjct: 62  FDIH----VPASLVYTATLATIDYMKEA 85

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} Length = 189

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 6/90 (6%)

Query: 13  HLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-S 71
           H+   +    +     R+    LD +  +         A  TLE +   G K  ++SN +
Sbjct: 5   HVIWDMGETLNTVPNTRYDHHPLDTYPEV----VLRKNAKETLEKVKQLGFKQAILSNTA 60

Query: 72  SRRASTTIDKLKSLGFDPSLFAGAITSGEL 101
           +         L + G     F     S   
Sbjct: 61  TSDTEVIKRVLTNFGIID-YFDFIYASNSE 89

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii} Length = 241

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 46  KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104
           +  PGA   L  L   G ++ +I++ +       +K+  L  D   F   I S     +
Sbjct: 94  REVPGARKVLIRLKELGYELGIITDGNPV--KQWEKILRLELDD-FFEHVIISDFEGVK 149

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} Length = 220

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 16/105 (15%)

Query: 8   QSNDPHLFQTLNGLRHIAETRRFKAWL-----------LDQFGVLHDGKKPYPGAISTLE 56
           ++     +   +GL H+ + + F   L           L +  +       Y   +  LE
Sbjct: 47  KAMGMINYPDEDGLEHV-DPKDFLYILGIYPSERLVKELKEADIRDGEAFLYDDTLEFLE 105

Query: 57  MLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101
            L + G K+ ++SN+S R       L+        F     S E+
Sbjct: 106 GLKSNGYKLALVSNASPR---VKTLLEKFDLKK-YFDALALSYEI 146

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii} Length = 235

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 2/71 (2%)

Query: 32  AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFDPS 90
                +  +  D      G    L+ +   G K  VI N      S T   L+  G    
Sbjct: 85  KRATARAILNVDESLVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLME- 143

Query: 91  LFAGAITSGEL 101
                  + E+
Sbjct: 144 FIDKTFFADEV 154

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3 Length = 190

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 9/90 (10%)

Query: 19  NGLRHIAET-----RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73
                  ET       F     +      +    + G    LE ++  G +  ++S+ + 
Sbjct: 50  VSTPFAIETFAPNLENFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHRND 109

Query: 74  RASTTIDKLKSLGFDPSLFAGAITSGELTH 103
           +    ++ L+        F   +TS     
Sbjct: 110 QV---LEILEKTSIAA-YFTEVVTSSSGFK 135

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} Length = 233

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 25  AETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84
            +  R        +  L       PGA+  LE L     K  + ++      T    LK+
Sbjct: 70  EQAERLSEKHAQAYERLQHQIIALPGAVELLETLDKENLKWCIATSGGID--TATINLKA 127

Query: 85  LGFDPSLFAGAITSGELTH 103
           L  D       +T  ++++
Sbjct: 128 LKLDI-NKINIVTRDDVSY 145

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Length = 137

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 30  FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89
            +  ++D  GVL    +      + L      G   V++SN           ++ L  + 
Sbjct: 2   MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGA--APIRELETNG 59

Query: 90  SLFAGAITSGEL 101
            +    + SGEL
Sbjct: 60  -VVDKVLLSGEL 70

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens} Length = 263

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 42  HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101
               +   GA  TL    T G ++ VISN  RR       L  LG     F   +TS   
Sbjct: 102 PCTWQVLDGAEDTLRECRTRGLRLAVISNFDRR---LEGILGGLGLRE-HFDFVLTSEAA 157

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 225

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 12  PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISN 70
              F  L G+    +   F+     +  +  +     +P  + TL  L   G ++ +IS 
Sbjct: 54  EESFSILTGITDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIIST 113

Query: 71  SSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103
             R    +   L++   D   F   I   ++TH
Sbjct: 114 KYRFRILSF--LRNHMPDD-WFDIIIGGEDVTH 143

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* Length = 205

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 21  LRHIA-----ETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA 75
           L H+A     E+    AWLL+    L  G +P PGA+  +  LA  G ++ +++ ++R  
Sbjct: 40  LTHLAALPADESAAKHAWLLEHERDLAQGSRPAPGAVELVRELAGRGYRLGILTRNAREL 99

Query: 76  STTIDKLKSLGFDPSLFAGAITSG 99
                 L+++G     FA A   G
Sbjct: 100 --AHVTLEAIGLAD-CFAEADVLG 120

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Length = 231

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 12  PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71
           P    TL G R    T  ++  L        D      GAI  L+ L      M ++SN 
Sbjct: 71  PKYLITLLGKRWKEATILYENSLEKS--QKSDNFMLNDGAIELLDTLKENNITMAIVSNK 128

Query: 72  SRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103
           +        ++         F   I SG+   
Sbjct: 129 NGER--LRSEIHHKNLTH-YFDSIIGSGDTGT 157

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 207

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 46  KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103
              PGA   L     +G +  + ++    A      LK LG +   F   +TS     
Sbjct: 85  VLMPGAREVLAWADESGIQQFIYTHKGNNA---FTILKDLGVES-YFTEILTSQSGFV 138

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 Length = 384

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 13  HLFQTL-NGLRHIAETRRFKAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVIS 69
            ++Q    G +   +  +  A    + G ++     +P       L  L   G ++ + +
Sbjct: 179 EVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIAT 238

Query: 70  NSSRRASTTIDKLKSLG----FDPSLFAGA 95
                   T+   ++LG    F+    A A
Sbjct: 239 GRPYT--ETVVPFENLGLLPYFEADFIATA 266

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} PDB: 1x42_A Length = 234

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 38  FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97
             +     + YP  +  L+ L      + +I++S       +  L +LG    LF    T
Sbjct: 92  LRMSQRYGELYPEVVEVLKSLK-GKYHVGMITDSD--TEQAMAFLDALGIKD-LFDSITT 147

Query: 98  SGEL 101
           S E 
Sbjct: 148 SEEA 151

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} Length = 240

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 31  KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90
           + +  D F ++       P A   LE LA     + ++SN          K++S G D  
Sbjct: 92  ERFSEDFFAIIPTKSGLMPHAKEVLEYLA-PQYNLYILSNGF--RELQSRKMRSAGVDR- 147

Query: 91  LFAGAITSGEL 101
            F   I S +L
Sbjct: 148 YFKKIILSEDL 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	100.0
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	99.94
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	99.94
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	99.93
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	99.93
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	99.92
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	99.91
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	99.88
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	99.87
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	99.84
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	99.75
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	99.71
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	99.24
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	99.14
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	99.09
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	99.06
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	99.05
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.03
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	98.98
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	98.98
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	98.94
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	98.93
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	98.92
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	98.92
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	98.89
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	98.88
3mn1_A	189	Probable YRBI family phosphatase; structural genom	98.85
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	98.85
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	98.8
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	98.77
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	98.76
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	98.76
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	98.75
3mmz_A	176	Putative HAD family hydrolase; structural genomics	98.75
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	98.74
2o2x_A	218	Hypothetical protein; structural genomics, joint c	98.72
3fvv_A	232	Uncharacterized protein; unknown function, structu	98.71
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	98.71
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	98.7
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	98.69
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	98.69
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.68
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	98.66
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	98.64
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	98.63
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	98.63
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	98.63
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	98.62
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	98.6
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	98.59
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	98.59
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	98.59
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	98.59
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	98.58
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	98.57
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	98.56
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	98.56
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	98.56
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	98.55
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	98.54
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	98.51
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	98.49
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	98.49
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	98.49
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	98.48
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	98.48
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	98.48
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	98.46
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	98.45
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	98.45
2zg6_A	220	Putative uncharacterized protein ST2620, probable	98.45
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	98.45
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	98.43
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	98.43
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	98.43
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	98.43
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	98.4
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	98.39
2hsz_A	243	Novel predicted phosphatase; structural genomics,	98.38
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	98.38
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	98.37
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	98.36
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	98.34
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	98.33
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	98.33
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	98.3
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	98.3
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	98.29
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	98.27
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	98.27
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	98.26
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	98.25
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	98.23
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.21
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	98.21
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	98.2
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	98.2
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	98.19
1te2_A	226	Putative phosphatase; structural genomics, phospha	98.18
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	98.17
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	98.16
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	98.14
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	98.14
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	98.13
3dao_A	283	Putative phosphatse; structural genomics, joint ce	98.11
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	98.1
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	98.1
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	98.09
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	98.08
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	98.08
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	98.08
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	98.05
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	98.05
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	98.04
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	98.03
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	98.03
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	98.02
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	98.02
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	97.99
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	97.96
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	97.93
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	97.91
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	97.89
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	97.89
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.87
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	97.86
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	97.79
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	97.78
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	97.75
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	97.75
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	97.73
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	97.69
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	97.63
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	97.57
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	97.54
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	97.51
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	97.41
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	97.33
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	96.26
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	97.08
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	96.89
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	96.88
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	96.66
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	96.63
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	96.62
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	96.48
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	96.36
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	96.22
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	96.15
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	95.96
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	95.53
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	94.78
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	94.63
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	94.57
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	94.38
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	93.68
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	93.34
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	93.33
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	92.52
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	92.27
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	92.06
2zg6_A	220	Putative uncharacterized protein ST2620, probable	92.02
2kln_A	130	Probable sulphate-transport transmembrane protein;	91.39
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	91.27
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	91.15
4gxt_A	385	A conserved functionally unknown protein; structur	90.92
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	90.11
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	89.81
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	89.74
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	89.32
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	89.15
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	89.07
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	89.05
3llo_A	143	Prestin; STAS domain, cell shape, glycoprotein, me	88.68
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	87.97
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	87.58
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	86.96
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	85.31
4dgh_A	130	Sulfate permease family protein; STAS domain, anio	85.15
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	85.09
3zxn_A	123	RSBS, anti-sigma-factor antagonist (STAS) domain p	84.8
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	83.6
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	83.53
1h4x_A	117	SPOIIAA, anti-sigma F factor antagonist; cell diff	83.3
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	83.15
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	82.63
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	81.95
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	81.42
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	81.25
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	80.97
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	80.64
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	80.56
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	80.1

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=100.00  E-value=7.4e-33  Score=250.39  Aligned_cols=190  Identities=21%  Similarity=0.222  Sum_probs=158.6

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhH-hCCCCCccccceeechhhHHHHH
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLK-SLGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~-~~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      +.++|+||+|||||++.+++||+.++|++|++.|++++|+|||+ ++.+++.++|+ .+|++..+ ++|+||+.+++.|+
T Consensus        12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~~-~~i~ts~~~~~~~~   90 (352)
T 3kc2_A           12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVSP-LQIIQSHTPYKSLV   90 (352)
T ss_dssp             CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCCG-GGEECTTGGGGGGT
T ss_pred             cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCCh-hhEeehHHHHHHHH
Confidence            67899999999999999999999999999999999999999998 46677888998 69999985 99999999998877


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccccccCCCceecC----------------------------C-----CCCccEEEE
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVE----------------------------N-----VEEADFILA  153 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~----------------------------~-----~~~~~~Vvv  153 (251)
                      .   .      ++++|++|.... ..++++.|++.+.                            +     ....++|++
T Consensus        91 ~---~------~~~v~viG~~~l-~~~l~~~G~~~v~~~~d~~~~~~~~~p~~~l~~ee~~~~~d~ipD~~~~~v~AVvv  160 (352)
T 3kc2_A           91 N---K------YSRILAVGTPSV-RGVAEGYGFQDVVHQTDIVRYNRDIAPFSGLSDEQVMEYSRDIPDLTTKKFDAVLV  160 (352)
T ss_dssp             T---T------CSEEEEESSTTH-HHHHHHHTCSEEEEHHHHHHHCGGGCTTCCCCHHHHHHHCCCCTTTTTSCCCEEEE
T ss_pred             h---c------CCEEEEECCHHH-HHHHHhCCCeEecchhHhhhhcccccccccCCHHHHhhhccCcccccccCCCEEEE
Confidence            4   1      468998885422 2367777776441                            0     134588988


Q ss_pred             ecCCCCCCCCCCCccCCHHHHHHHHHHHHh---------------CCCcEEEccCCccccccCc-eeeCchHHHHHHHH-
Q 025564          154 HGTEGMGLPSGDVRPMSLQDLEKILEICAS---------------KKIPMVVANPDYVTVEARA-LRVMPGTLASKFEK-  216 (251)
Q Consensus       154 ~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~---------------~g~~li~~n~D~~~~~~~~-~~~~~G~i~~~~~~-  216 (251)
                                +.|+..+|.+++.++.++..               +|++|++||+|.+||.+.+ +++|+|+|.++++. 
T Consensus       161 ----------~~Dp~d~~~~lq~~~d~L~s~~G~~~~~~~~~~~~~~~~~i~tN~D~~~~~~~~~~r~g~Ga~~~al~~~  230 (352)
T 3kc2_A          161 ----------FNDPHDWAADIQIISDAINSENGMLNTLRNEKSGKPSIPIYFSNQDLLWANPYKLNRFGQGAFRLLVRRL  230 (352)
T ss_dssp             ----------CSCCSCHHHHHHHHHHHHTSBTTBTTCCCSCCCSSCSSCEEESCCCSEECCSSSSCEECHHHHHHHHHHH
T ss_pred             ----------eCCCcchHHHHHHHHHHHHhcCCCcCcccccccCCCCCeEEEECCCcccccCCCCcccCchHHHHHHHHH
Confidence                      78999999999999997542               6899999999999999877 69999998888775 


Q ss_pred             ---h-CCC--eEEecCCCHHHHHHHHHhc
Q 025564          217 ---L-GGE--VRWMGKPDKVVQLLCSLSS  239 (251)
Q Consensus       217 ---~-g~~--~~~~GKP~~~~~~~a~~~l  239 (251)
                         + |++  +.++|||+|.+|++|++++
T Consensus       231 y~~~tg~~~~~~~~GKP~~~~y~~A~~~l  259 (352)
T 3kc2_A          231 YLELNGEPLQDYTLGKPTKLTYDFAHHVL  259 (352)
T ss_dssp             HHHHHSSCCCCEECSTTCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCceEecCCCHHHHHHHHHHH
Confidence               4 665  5899999999999998765

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=99.94  E-value=2.6e-26  Score=198.22  Aligned_cols=199  Identities=20%  Similarity=0.262  Sum_probs=164.2

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhHHHHHhc
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR  108 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~  108 (251)
                      +++|+||+||||+++..++|++.++|++|+++|++++++||++. ....+.++|+++|++.. .++++++..+...|+++
T Consensus         1 ik~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~~-~~~i~~~~~~~~~~l~~   79 (263)
T 1zjj_A            1 MVAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVS-SSIIITSGLATRLYMSK   79 (263)
T ss_dssp             CEEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCCC-GGGEEEHHHHHHHHHHH
T ss_pred             CeEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC-hhhEEecHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999884 55678888999999987 48999999999999987


Q ss_pred             cCchhhhhcCCeEEEeccCCcccccccCCCceecC-CC------CCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHH
Q 025564          109 RDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVE-NV------EEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEIC  181 (251)
Q Consensus       109 ~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~-~~------~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~  181 (251)
                      ...      +.++|++|.... ..++++.|++.+. +.      .++++|++          |+|....|+++..+++.+
T Consensus        80 ~~~------~~~v~viG~~~l-~~~l~~~G~~~~~~~~~~~~~~~~~~~v~~----------g~~~~~~~~~~~~~l~~L  142 (263)
T 1zjj_A           80 HLD------PGKIFVIGGEGL-VKEMQALGWGIVTLDEARQGSWKEVKHVVV----------GLDPDLTYEKLKYATLAI  142 (263)
T ss_dssp             HSC------CCCEEEESCHHH-HHHHHHHTSCBCCHHHHHTTGGGGCCEEEE----------CCCTTCBHHHHHHHHHHH
T ss_pred             hCC------CCEEEEEcCHHH-HHHHHHcCCeeccCCcccccccCCCCEEEE----------ecCCCCCHHHHHHHHHHH
Confidence            654      367888775311 2367777876542 11      12788887          778889999999999976


Q ss_pred             HhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEE
Q 025564          182 ASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLI  247 (251)
Q Consensus       182 ~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~  247 (251)
                      . +|.++++||+|..++.+.+...+.|++..+++.. +.++...|||+|.+|+.+++++.-...+||
T Consensus       143 ~-~g~~~i~tn~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~V  208 (263)
T 1zjj_A          143 R-NGATFIGTNPDATLPGEEGIYPGAGSIIAALKVATNVEPIIIGKPNEPMYEVVREMFPGEELWMV  208 (263)
T ss_dssp             H-TTCEEEESCCCSEEEETTEEEECHHHHHHHHHHHHCCCCEECSTTSHHHHHHHHHHSTTCEEEEE
T ss_pred             H-CCCEEEEECCCccccCCCCCcCCcHHHHHHHHHHhCCCccEecCCCHHHHHHHHHhCCcccEEEE
Confidence            5 8999999999999886666566779999999985 888899999999999999998555566665

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=99.94  E-value=5.8e-26  Score=197.77  Aligned_cols=206  Identities=21%  Similarity=0.374  Sum_probs=166.6

Q ss_pred             cCChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCC-Cccccce
Q 025564           18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFD-PSLFAGA   95 (251)
Q Consensus        18 ~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~-~~~~~~I   95 (251)
                      .++++++++  ++++|+||+||||+++..++|++.++|++|+++|++++++||++ +....+.++++++|++ .. ++++
T Consensus         4 ~~~~~~~~~--~~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~~~~-~~~i   80 (284)
T 2hx1_A            4 IESFKSLLP--KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSIT-ADKI   80 (284)
T ss_dssp             BCCHHHHGG--GCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCTTCC-GGGE
T ss_pred             HHHHHHHHh--cCCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcCCCC-HhhE
Confidence            467889999  99999999999999999999999999999999999999999986 5666788899999998 87 5899


Q ss_pred             eechhhHHHHHhccCchhhhhcCCeEE-EeccCCcccccccCCCceecC----C---CCCccEEEEecCCCCCCCCCCCc
Q 025564           96 ITSGELTHQYLLRRDDAWFAALGRSCI-HMTWSDRGAISLEGLGLKVVE----N---VEEADFILAHGTEGMGLPSGDVR  167 (251)
Q Consensus        96 its~~~~~~~L~~~~~~~~~~~g~~~~-~~g~~~~~~~~l~~~g~~~~~----~---~~~~~~Vvv~~~~~~~~~~g~d~  167 (251)
                      +++..++..||++...      + ++| ++|.... ..++++.|++...    +   .+.+++|++          +.+.
T Consensus        81 i~~~~~~~~~l~~~~~------~-~v~~~lg~~~l-~~~l~~~G~~~~~~~~~~~~~~~~~~avv~----------~~~~  142 (284)
T 2hx1_A           81 ISSGMITKEYIDLKVD------G-GIVAYLGTANS-ANYLVSDGIKMLPVSAIDDSNIGEVNALVL----------LDDE  142 (284)
T ss_dssp             EEHHHHHHHHHHHHCC------S-EEEEEESCHHH-HHTTCBTTEEEEEGGGCCTTTGGGEEEEEE----------CCSS
T ss_pred             EcHHHHHHHHHHhhcC------C-cEEEEecCHHH-HHHHHHCCCeeccCCCCCcccCCCCCEEEE----------eCCC
Confidence            9999999999987543      4 777 7664311 2367888886651    1   135778887          5667


Q ss_pred             cC----CHHHHHHHHHHHHhCCCcEEEccCCcccc-ccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhc--
Q 025564          168 PM----SLQDLEKILEICASKKIPMVVANPDYVTV-EARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSS--  239 (251)
Q Consensus       168 ~~----~~~~l~~a~~~~~~~g~~li~~n~D~~~~-~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l--  239 (251)
                      .+    +|+++..   .+.++|.+.++||++..++ ...+..++.+.+..+++.. +.+....|||+|.+|+.+++++  
T Consensus       143 ~~~~~~~~~~l~~---~L~~~g~~~i~tn~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~KP~p~~~~~a~~~l~~  219 (284)
T 2hx1_A          143 GFNWFHDLNKTVN---LLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDMLRQ  219 (284)
T ss_dssp             SSCHHHHHHHHHH---HHHHCCCCEEEECCCSEEECSSSCEEECHHHHHHHHHHHHCSCEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcCccccHHHHHH---HHhcCCCeEEEECCCccccCcCCCccccCChHHHHHHHHhCCceeEecCCCHHHHHHHHHHHhh
Confidence            77    5555555   4557899999999999887 4444567889999999985 8888999999999999999999  


Q ss_pred             --CCce--EEEE
Q 025564          240 --SVII--LFLI  247 (251)
Q Consensus       240 --~~~~--~~~~  247 (251)
                        |+++  .+||
T Consensus       220 ~~~~~~~~~~~V  231 (284)
T 2hx1_A          220 KMEISKREILMV  231 (284)
T ss_dssp             TSCCCGGGEEEE
T ss_pred             ccCCCcceEEEE
Confidence              9876  4444

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=99.93  E-value=1.9e-25  Score=192.69  Aligned_cols=195  Identities=16%  Similarity=0.240  Sum_probs=164.8

Q ss_pred             cCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhhHHHHH
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      |+||+|+||+||||+++.+.+|++.++|++|+++|++++|+||++ |+...+...|+.+|+... .++++++......++
T Consensus         3 m~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~~~-~~~ii~~~~~~~~~l   81 (264)
T 3epr_A            3 LAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETP-LETIYTATMATVDYM   81 (264)
T ss_dssp             CCCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCCC-GGGEEEHHHHHHHHH
T ss_pred             CCCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC-hhheecHHHHHHHHH
Confidence            469999999999999999999999999999999999999999987 666778899999999987 489999999999998


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCC
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKI  186 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~  186 (251)
                      ++...      +.++++.+.... ..++++.|+.+..  ..++.+++          +.+..++|.++..+++. ++++.
T Consensus        82 ~~~~~------~~~~~~~~~~~l-~~~l~~~g~~~~~--~~~~~v~~----------~~~~~~~~~~~~~~~~~-l~~~~  141 (264)
T 3epr_A           82 NDMNR------GKTAYVIGEEGL-KKAIADAGYVEDT--KNPAYVVV----------GLDWNVTYDKLATATLA-IQNGA  141 (264)
T ss_dssp             HHHTC------CSEEEEESCHHH-HHHHHHTTCEECS--SSCSEEEE----------CCCTTCCHHHHHHHHHH-HHTTC
T ss_pred             HHhCC------CCeEEEECCHHH-HHHHHHcCCcccC--CcCCEEEE----------eCCCCCCHHHHHHHHHH-HHCCC
Confidence            76543      356766553211 2356777876643  56788887          56788999999999986 57899


Q ss_pred             cEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          187 PMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       187 ~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      +++++|+|..++...+..++.|.+...++.. +.++...|||+|.+|+.+++++|+++
T Consensus       142 ~~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  199 (264)
T 3epr_A          142 LFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPR  199 (264)
T ss_dssp             EEEESCCCSEEEETTEEEECHHHHHHHHHHHHSCCCEECSTTSHHHHHHHHHHHTSCG
T ss_pred             eEEEEcCCccccCCCceecCccHHHHHHHHHhCCCcccCCCCCHHHHHHHHHHhCcCc
Confidence            9999999998887776778899999999984 88999999999999999999999865

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=99.93  E-value=7.8e-25  Score=188.52  Aligned_cols=196  Identities=20%  Similarity=0.313  Sum_probs=163.7

Q ss_pred             cCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhhHHHHH
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      |+||+|+||+||||+++.+++|++.++|++|+++|++++|+||++ |+...+.+.|+.+|++.. .++++++......++
T Consensus         6 ~~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~~~-~~~ii~~~~~~~~~~   84 (268)
T 3qgm_A            6 PDKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVG-EDEILVATYATARFI   84 (268)
T ss_dssp             CCCSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCCCC-GGGEEEHHHHHHHHH
T ss_pred             ccCCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCCCC-HHHeeCHHHHHHHHH
Confidence            379999999999999999999999999999999999999999987 566778899999999987 489999999999998


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCC
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKI  186 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~  186 (251)
                      .+...      +.++++++.... ..++.+.|+.+.. ...+++++.          +.+..++|+++..+++. ++++.
T Consensus        85 ~~~~~------~~~~~~~~~~~l-~~~~~~~g~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~-l~~~~  145 (268)
T 3qgm_A           85 AREKP------NAKVFTTGEEGL-IEELRLAGLEIVD-YDEAEYLVV----------GSNRKINFELMTKALRA-CLRGI  145 (268)
T ss_dssp             HHHST------TCEEEECCCHHH-HHHHHHTTCEECC-TTTCSEEEE----------CCCTTCBHHHHHHHHHH-HHHTC
T ss_pred             HhhCC------CCeEEEEcCHHH-HHHHHHcCCeecC-CCCCCEEEE----------ecCCCCCHHHHHHHHHH-HhCCC
Confidence            76543      356776543211 1256677877643 356778877          67788899999999876 55689


Q ss_pred             cEEEccCCccccccCceeeCchHHHHHHHHh-CCCe-EEecCCCHHHHHHHHHhcCCce
Q 025564          187 PMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEV-RWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       187 ~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~-~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      +++++|+|..++...+..++.|.+...++.. +.++ ...|||+|.+|+.+++++|+++
T Consensus       146 ~~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~  204 (268)
T 3qgm_A          146 RYIATNPDRIFPAEDGPIPGTGMIIGALYWMTGREPDVVVGKPSEVIMREALDILGLDA  204 (268)
T ss_dssp             EEEESCCCCEEEETTEEEECTHHHHHHHHHHHSCCCSEECSTTSHHHHHHHHHHHTCCG
T ss_pred             cEEEEeCCCcccCCCCceeChHHHHHHHHHHhCCCcceecCCCCHHHHHHHHHHhCCCc
Confidence            9999999999887766788999999999874 8888 9999999999999999999865

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=99.92  E-value=5.2e-24  Score=187.76  Aligned_cols=217  Identities=21%  Similarity=0.200  Sum_probs=170.2

Q ss_pred             CCchhccCChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCC-C
Q 025564           12 PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFD-P   89 (251)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~-~   89 (251)
                      +-+..+.++++++++  ++++|+||+||||+++..++|++.++|++|+++|++++++||++ ++...+..+|+++|++ .
T Consensus         5 ~~~~~~~~~~~~~~~--~~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~~~   82 (306)
T 2oyc_A            5 RCERLRGAALRDVLG--RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFGGL   82 (306)
T ss_dssp             CCEECCHHHHHHHHH--HCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCCSC
T ss_pred             hhhcCCHHHHHHHHh--hCCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCCcC
Confidence            345556677899999  99999999999999999999999999999999999999999987 5667788899999998 6


Q ss_pred             ccccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecCC-------CCCccEEEEecCCCCCCC
Q 025564           90 SLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVEN-------VEEADFILAHGTEGMGLP  162 (251)
Q Consensus        90 ~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~-------~~~~~~Vvv~~~~~~~~~  162 (251)
                      . .++++++..++..|+.+.... ...-|.++|++|.... ..++.+.|+.....       ...+++|+.         
T Consensus        83 ~-~~~i~~~~~~~~~~l~~~~~~-~~~~~~~v~~~g~~~l-~~~l~~~g~~~~~~~~~~~~~~~~~~~v~~---------  150 (306)
T 2oyc_A           83 R-AEQLFSSALCAARLLRQRLPG-PPDAPGAVFVLGGEGL-RAELRAAGLRLAGDPSAGDGAAPRVRAVLV---------  150 (306)
T ss_dssp             C-GGGEEEHHHHHHHHHHHHCCS-CSSSCCEEEEESCHHH-HHHHHHTTCEETTSCCCC---CCCEEEEEE---------
T ss_pred             C-hhhEEcHHHHHHHHHHhhCCc-cccCCCeEEEECCHHH-HHHHHHCCCEeecccccccccCCCCCEEEE---------
Confidence            6 489999999999999763210 0000356777654211 12556666655421       234566766         


Q ss_pred             CCCCccCCHHHHHHHHHHHHhCCCcEEEccCCccccccC-ceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcC
Q 025564          163 SGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEAR-ALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSS  240 (251)
Q Consensus       163 ~g~d~~~~~~~l~~a~~~~~~~g~~li~~n~D~~~~~~~-~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~  240 (251)
                       |++....|+.+..+++.+.++|..++++|++...+... ......|.+...++.. +.+....|||+|.+|+.+++++|
T Consensus       151 -~~~~~~~~~~~~~~l~~l~~~g~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~KP~~~~~~~~~~~lg  229 (306)
T 2oyc_A          151 -GYDEHFSFAKLREACAHLRDPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYMFECITENFS  229 (306)
T ss_dssp             -CCCTTCCHHHHHHHHHHHTSTTSEEEESCCCCEEECTTSCEEECHHHHHHHHHHHHTCCCEECSTTSTHHHHHHHHHSC
T ss_pred             -eCCCCCCHHHHHHHHHHHHcCCCEEEEEcCCccccCCCCCcCCCCcHHHHHHHHHhCCCceeeCCCCHHHHHHHHHHcC
Confidence             67888899999999988666788889999999887433 4567778888899874 88888999999999999999999


Q ss_pred             Cce
Q 025564          241 VII  243 (251)
Q Consensus       241 ~~~  243 (251)
                      +++
T Consensus       230 i~~  232 (306)
T 2oyc_A          230 IDP  232 (306)
T ss_dssp             CCG
T ss_pred             CCh
Confidence            875

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.91  E-value=2.3e-23  Score=179.27  Aligned_cols=194  Identities=20%  Similarity=0.259  Sum_probs=160.8

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhhHHHHHh
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~  107 (251)
                      ++|+|+||+||||+++.+++|++.++|++|+++|++++++||++ |+...+...|+.+|++... +.++++......++.
T Consensus         5 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~~~~-~~ii~~~~~~~~~~~   83 (266)
T 3pdw_A            5 TYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATE-EQVFTTSMATAQHIA   83 (266)
T ss_dssp             CCSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCCCCG-GGEEEHHHHHHHHHH
T ss_pred             cCCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCH-HHccCHHHHHHHHHH
Confidence            59999999999999998899999999999999999999999976 6667788899999999874 899999999999887


Q ss_pred             ccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCc
Q 025564          108 RRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIP  187 (251)
Q Consensus       108 ~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~  187 (251)
                      +...      +.+++..+.... ...+++.|+.+..  ..++.+++          +.+....|.++..+++. +.++.+
T Consensus        84 ~~~~------~~~~~~~~~~~~-~~~~~~~g~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~-l~~~~~  143 (266)
T 3pdw_A           84 QQKK------DASVYVIGEEGI-RQAIEENGLTFGG--ENADFVVV----------GIDRSITYEKFAVGCLA-IRNGAR  143 (266)
T ss_dssp             HHCT------TCEEEEESCHHH-HHHHHHTTCEECC--TTCSEEEE----------CCCTTCCHHHHHHHHHH-HHTTCE
T ss_pred             hhCC------CCEEEEEeChhH-HHHHHHcCCccCC--CCCCEEEE----------eCCCCCCHHHHHHHHHH-HHCCCe
Confidence            6543      356665543111 2256667776643  56778887          56788899999998875 567889


Q ss_pred             EEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          188 MVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       188 li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ++++|+|..++......++.+.+...++.. +.+....|||++.+|+.+++++|+++
T Consensus       144 ~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~  200 (266)
T 3pdw_A          144 FISTNGDIAIPTERGLLPGNGSLTSVLTVSTGVQPVFIGKPESIIMEQAMRVLGTDV  200 (266)
T ss_dssp             EEESCCCCEEEETTEEEECHHHHHHHHHHHHCCCCEECSTTSSHHHHHHHHHHTCCG
T ss_pred             EEEEcCCceeECCCceEecchHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCh
Confidence            999999998887666677888999999874 88899999999999999999999865

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=99.88  E-value=1.1e-21  Score=168.28  Aligned_cols=194  Identities=17%  Similarity=0.229  Sum_probs=158.8

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHh-CCCCCccccceeechhhHHHHH
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKS-LGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~-~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      .+++|+||+||||+++...++++.++++.|++.|+++.++||++. ...++.+.|.+ +|++... ++++++......|+
T Consensus         4 ~~k~v~fDlDGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~t~~~~~~~~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~   82 (264)
T 1yv9_A            4 DYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPA-SLVYTATLATIDYM   82 (264)
T ss_dssp             SCCEEEECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCCCG-GGEEEHHHHHHHHH
T ss_pred             cCCEEEEeCCCeEEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHhcCCCCCh-hhEEcHHHHHHHHH
Confidence            589999999999999999999999999999999999999999984 55667777877 9999874 89999999988888


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCC
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKI  186 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~  186 (251)
                      .+...      +..++..+.... ..++++.|+....  ..+++++.          +.+....|+.+..+++.+ ++|.
T Consensus        83 ~~~~~------~~~~~~~g~~~l-~~~l~~~g~~~~~--~~~~~v~~----------~~~~~~~~~~~~~~l~~l-~~g~  142 (264)
T 1yv9_A           83 KEANR------GKKVFVIGEAGL-IDLILEAGFEWDE--TNPDYVVV----------GLDTELSYEKVVLATLAI-QKGA  142 (264)
T ss_dssp             HHHCC------CSEEEEESCHHH-HHHHHHTTCEECS--SSCSEEEE----------CCCTTCCHHHHHHHHHHH-HTTC
T ss_pred             HhhCC------CCEEEEEeCHHH-HHHHHHcCCcccC--CCCCEEEE----------ECCCCcCHHHHHHHHHHH-hCCC
Confidence            76643      345665553211 2367778887654  46777776          566778899999999876 5899


Q ss_pred             cEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          187 PMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       187 ~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ++++||.+..++...+..++.|.+...++.. +.+....|||+|.+|+.+++++|+++
T Consensus       143 ~~i~tn~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~  200 (264)
T 1yv9_A          143 LFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEK  200 (264)
T ss_dssp             EEEESCCCSEEEETTEEEECHHHHHHHHHHHHTCCCEECSTTSHHHHHHHHHHHCSCG
T ss_pred             EEEEECCCCcccCCCCcccCCcHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCH
Confidence            9999999998776555567888899999874 77888999999999999999999875

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=99.87  E-value=4.1e-21  Score=165.26  Aligned_cols=199  Identities=23%  Similarity=0.309  Sum_probs=158.1

Q ss_pred             HHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechh
Q 025564           22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        22 ~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .+++.  ++++|+||+||||+++.++.|++.+++++|+++|++++++||++ |....+.+.++.+|++... ++++++..
T Consensus        11 ~~~~~--~~~~v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~~~~-~~ii~~~~   87 (271)
T 1vjr_A           11 HHVLD--KIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPD-DAVVTSGE   87 (271)
T ss_dssp             -CGGG--GCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCCCCG-GGEEEHHH
T ss_pred             ccccc--CCCEEEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCCCCh-hhEEcHHH
Confidence            45677  99999999999999999999999999999999999999999996 6667788899999998774 78999988


Q ss_pred             hHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHH
Q 025564          101 LTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEI  180 (251)
Q Consensus       101 ~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~  180 (251)
                      ....|+.+...      +..++..+.... ...+++.|+....  ..++.++.          +.+....|+.+..+++.
T Consensus        88 ~~~~~~~~~~~------~~~~~~~~~~~~-~~~l~~~g~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~l~~  148 (271)
T 1vjr_A           88 ITAEHMLKRFG------RCRIFLLGTPQL-KKVFEAYGHVIDE--ENPDFVVL----------GFDKTLTYERLKKACIL  148 (271)
T ss_dssp             HHHHHHHHHHC------SCEEEEESCHHH-HHHHHHTTCEECS--SSCSEEEE----------CCCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHhCC------CCeEEEEcCHHH-HHHHHHcCCccCC--CCCCEEEE----------eCCCCcCHHHHHHHHHH
Confidence            88888865432      356665443211 2255666765543  44566766          45567789999988887


Q ss_pred             HHhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCe-EEecCCCHHHHHHHHHhcCCce
Q 025564          181 CASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEV-RWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       181 ~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~-~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      + .++.+++++|++...+...+..+..+.+...++.. +.+. ...|||.+.+|+.+++++|+++
T Consensus       149 l-~~~~~~i~tn~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~lgi~~  212 (271)
T 1vjr_A          149 L-RKGKFYIATHPDINCPSKEGPVPDAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPK  212 (271)
T ss_dssp             H-TTTCEEEESCCCSEECCTTSCEECHHHHHHHHHHHHSCCCSEECSTTSTHHHHHHHHHHTCCG
T ss_pred             H-HCCCeEEEECCCccccCCCCccccccHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHhCCCC
Confidence            6 78999999999988776655567777888888874 7788 8999999999999999999876

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=99.84  E-value=4.1e-19  Score=150.97  Aligned_cols=189  Identities=18%  Similarity=0.233  Sum_probs=144.8

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhhHHHHHh
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~  107 (251)
                      .+++|+||+||||+++...++++.++++.|+++|+++.++||++ ++...+.+.|+.+|++... ++++++......++.
T Consensus         6 ~ik~i~fDlDGTLld~~~~~~~~~~ai~~l~~~G~~~~~~t~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~   84 (259)
T 2ho4_A            6 ALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLKKLEFEISE-DEIFTSLTAARNLIE   84 (259)
T ss_dssp             CCCEEEEESSSSSCC---CCTTHHHHHHHHHTSSCEEEEEECCSSCCHHHHHHHHHHTTCCCCG-GGEEEHHHHHHHHHH
T ss_pred             hCCEEEEeCcCcEEeCCEeCcCHHHHHHHHHHCCCeEEEEeCCCCcCHHHHHHHHHHcCCCccH-HHeecHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999987 4556788889999999874 889998888888876


Q ss_pred             ccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCc
Q 025564          108 RRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIP  187 (251)
Q Consensus       108 ~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~  187 (251)
                      +..        ..+++++.... ..++...+.      ..++++++.         +.+..+.|+.+..+++.+. +|.+
T Consensus        85 ~~~--------~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~---------~~~~~~~~~~~~~~l~~l~-~~~~  139 (259)
T 2ho4_A           85 QKQ--------VRPMLLLDDRA-LPEFTGVQT------QDPNAVVIG---------LAPEHFHYQLLNQAFRLLL-DGAP  139 (259)
T ss_dssp             HHT--------CCEEEESCGGG-GGGGTTCCC------SSCCEEEEC---------CCGGGCBHHHHHHHHHHHH-TTCC
T ss_pred             HcC--------CeEEEEeCHHH-HHHHHHcCC------CCCCEEEEe---------cCCCCCCHHHHHHHHHHHH-CCCE
Confidence            543        23454443211 124444332      245667763         2244567889999998765 8999


Q ss_pred             EEEccCCccccccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          188 MVVANPDYVTVEARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       188 li~~n~D~~~~~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ++++|.+...+.......+.+.+...++. .+.+....|||+|.+|+.+++++|+++
T Consensus       140 ~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~  196 (259)
T 2ho4_A          140 LIAIHKARYYKRKDGLALGPGPFVTALEYATDTKAMVVGKPEKTFFLEALRDADCAP  196 (259)
T ss_dssp             EEESCCCSEEEETTEEEECSHHHHHHHHHHHTCCCEECSTTSHHHHHHHGGGGTCCG
T ss_pred             EEEECCCCcCcccCCcccCCcHHHHHHHHHhCCCceEecCCCHHHHHHHHHHcCCCh
Confidence            99999998877666567788877776665 477888899999999999999999876

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=99.75  E-value=1.1e-16  Score=133.91  Aligned_cols=191  Identities=20%  Similarity=0.287  Sum_probs=141.1

Q ss_pred             cCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhhHHHHH
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      |.+++|+||+||||++....++.+.++++.|++.|+++.++||.+ ++...+.+.+..+|+.... +.++++......|+
T Consensus         1 M~~k~i~fDlDGTLl~~~~~~~~~~~~~~~l~~~g~~~~~~t~~~g~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~   79 (250)
T 2c4n_A            1 MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFL   79 (250)
T ss_dssp             CCCCEEEEECBTTTEETTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCCCCG-GGEEEHHHHHHHHH
T ss_pred             CCccEEEEcCcceEEeCCEeCcCHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHHcCCCCCH-HHeEcHHHHHHHHH
Confidence            568999999999999999999999999999999999999999886 5556677888888987653 67777766566666


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCC
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKI  186 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~  186 (251)
                      +....       .....-+.. .-+..+++.|+.+..  ...+.++.          +.+..++|.++..+... ..+++
T Consensus        80 ~~~~~-------~~~~~~~~~-~~l~~l~~~g~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~  138 (250)
T 2c4n_A           80 RRQEG-------KKAYVVGEG-ALIHELYKAGFTITD--VNPDFVIV----------GETRSYNWDMMHKAAYF-VANGA  138 (250)
T ss_dssp             HTSSC-------CEEEEECCT-HHHHHHHHTTCEECS--SSCSEEEE----------CCCTTCCHHHHHHHHHH-HHTTC
T ss_pred             HhcCC-------CEEEEEcCH-HHHHHHHHcCCcccC--CCCCEEEE----------eCCCCCCHHHHHHHHHH-HHCCC
Confidence            54321       222222211 112356667776653  45677776          45678899999888764 67889


Q ss_pred             cEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          187 PMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       187 ~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      +++++|.+   +.........|.+...++.. +.+....|||.+.+|+.+++++|+++
T Consensus       139 ~~i~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~lgi~~  193 (250)
T 2c4n_A          139 RFIATNPD---THGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHS  193 (250)
T ss_dssp             EEEESCCC---SBSSTTCBCHHHHHHHHHHHHCCCCEECSTTSTHHHHHHHHHHTCCG
T ss_pred             EEEEECCC---CCCCCeeecchHHHHHHHHHhCCCceEeCCCCHHHHHHHHHHcCCCc
Confidence            99999988   22222234456677777764 77888999999999999999999865

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=99.71  E-value=1.9e-15  Score=128.37  Aligned_cols=189  Identities=18%  Similarity=0.218  Sum_probs=137.3

Q ss_pred             CccEEEEeccccccC----CCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhhHH
Q 025564           29 RFKAWLLDQFGVLHD----GKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTH  103 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~----g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~  103 (251)
                      .+++|+||+||||++    +..+.++..++++.|+++|+++.++||++ ++...+...++++|++... +.+++......
T Consensus        11 ~~k~i~fDlDGTLl~s~~~~~~~~~~~~~a~~~l~~~G~~~~~~t~~~gr~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~   89 (271)
T 2x4d_A           11 GVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESAASRAELVGQLQRLGFDISE-QEVTAPAPAAC   89 (271)
T ss_dssp             TCCEEEECCBTTTEECCTTTCEECTTHHHHHHHHHHSSSEEEEECCCCSSCHHHHHHHHHHTTCCCCG-GGEECHHHHHH
T ss_pred             cCCEEEEeCCCeEEecCCCCCccCcCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHCCCCCCH-HHeecHHHHHH
Confidence            689999999999999    56788999999999999999999999986 5556677888889998763 77888777666


Q ss_pred             HHHhccCchhhhhcCCeEEEeccCCcccc-cccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHH
Q 025564          104 QYLLRRDDAWFAALGRSCIHMTWSDRGAI-SLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICA  182 (251)
Q Consensus       104 ~~L~~~~~~~~~~~g~~~~~~g~~~~~~~-~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~  182 (251)
                      .++....        ...+....  .+.. .++....      .....+++.         +.+..+.|..+...++.+.
T Consensus        90 ~~~~~~~--------~~~~~~~~--~~~~~~l~~~~~------~~~~~~~~~---------~~~~~~~~~~~~~~l~~l~  144 (271)
T 2x4d_A           90 QILKERG--------LRPYLLIH--DGVRSEFDQIDT------SNPNCVVIA---------DAGESFSYQNMNNAFQVLM  144 (271)
T ss_dssp             HHHHHHT--------CCEEEECC--GGGGGGGTTSCC------SSCSEEEEC---------CCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHcC--------CEEEEEeC--HHHHHHHHHcCC------CCCCEEEEe---------cCCCCcCHHHHHHHHHHHH
Confidence            6554432        12222221  2222 2333221      234556654         3355667888888888766


Q ss_pred             hC-CCcEEEccCCccccccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          183 SK-KIPMVVANPDYVTVEARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       183 ~~-g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ++ +.+++++|.+...........+.+.+...+.. .+.+....|||.+.+|+.+++++|+++
T Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~lgi~~  207 (271)
T 2x4d_A          145 ELEKPVLISLGKGRYYAATSGLMLDVGPYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEA  207 (271)
T ss_dssp             HCSSCCEEEECCCSEEEETTEEEECHHHHHHHHHHHHTCCCEEESTTCHHHHHHHHHHHTCCG
T ss_pred             hcCCCeEEEEcCCcccccCCCcccChhHHHHHHHHHhCCceeeccCCCHHHHHHHHHHhCCCc
Confidence            66 89999998887665544445666666665554 377888999999999999999999865

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=99.24  E-value=2.2e-11  Score=99.46  Aligned_cols=73  Identities=19%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             cCccEEEEeccccccC---------------CCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCcc
Q 025564           28 RRFKAWLLDQFGVLHD---------------GKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSL   91 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~---------------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~   91 (251)
                      |++++++||+||||++               ...++||+.++|++|+++|++++++||++. ....+...|+++|+... 
T Consensus         1 m~ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~-   79 (189)
T 3ib6_A            1 MSLTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDY-   79 (189)
T ss_dssp             --CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGG-
T ss_pred             CCceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhh-
Confidence            5789999999999944               457899999999999999999999999985 33456788999999988 


Q ss_pred             ccceeechhh
Q 025564           92 FAGAITSGEL  101 (251)
Q Consensus        92 ~~~Iits~~~  101 (251)
                      |+.++++.+.
T Consensus        80 fd~i~~~~~~   89 (189)
T 3ib6_A           80 FDFIYASNSE   89 (189)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEEEEcccc
Confidence            7999988763

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=99.14  E-value=2.2e-11  Score=93.04  Aligned_cols=68  Identities=19%  Similarity=0.248  Sum_probs=58.3

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      +++++||+||||++...++||+.++|++|+++|++++++||++...  ....++++|+... |+.++++.+
T Consensus         2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~--~~~~l~~~~l~~~-f~~i~~~~~   69 (137)
T 2pr7_A            2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGL--GAAPIRELETNGV-VDKVLLSGE   69 (137)
T ss_dssp             CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGG--GGHHHHHHHHTTS-SSEEEEHHH
T ss_pred             CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHHCChHhh-ccEEEEecc
Confidence            6899999999999888899999999999999999999999987543  3356777888877 688888764

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=99.09  E-value=1.3e-10  Score=92.23  Aligned_cols=109  Identities=21%  Similarity=0.246  Sum_probs=74.1

Q ss_pred             hHHHhcccCccEEEEeccccccCCCcc-----------CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           21 LRHIAETRRFKAWLLDQFGVLHDGKKP-----------YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        21 ~~~~~~~~~~~~~l~D~DGvL~~g~~~-----------~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      +.+.+.  .+++++||+||||+++...           .|++.++|++|+++|++++++||++..  .+...++++|+..
T Consensus         2 l~~~~~--~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~--~~~~~l~~~gl~~   77 (162)
T 2p9j_A            2 LRDRVK--KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSA--PLITRLKELGVEE   77 (162)
T ss_dssp             HHHHHH--HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCH--HHHHHHHHTTCCE
T ss_pred             cccccc--ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcH--HHHHHHHHcCCHh
Confidence            456666  7999999999999986532           356889999999999999999998753  3557788899987


Q ss_pred             ccccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564           90 SLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus        90 ~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      . |+.-..........+++.+.+     ...++.+|.+......++..|+
T Consensus        78 ~-~~~~kp~~~~~~~~~~~~~~~-----~~~~~~vGD~~~Di~~a~~ag~  121 (162)
T 2p9j_A           78 I-YTGSYKKLEIYEKIKEKYSLK-----DEEIGFIGDDVVDIEVMKKVGF  121 (162)
T ss_dssp             E-EECC--CHHHHHHHHHHTTCC-----GGGEEEEECSGGGHHHHHHSSE
T ss_pred             h-ccCCCCCHHHHHHHHHHcCCC-----HHHEEEECCCHHHHHHHHHCCC
Confidence            6 555445555555555554432     1356666754333334445555

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=99.06  E-value=1.4e-10  Score=94.35  Aligned_cols=65  Identities=18%  Similarity=0.080  Sum_probs=53.7

Q ss_pred             CccEEEEeccccccCC-------------------------CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH
Q 025564           29 RFKAWLLDQFGVLHDG-------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK   83 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g-------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~   83 (251)
                      .+++++||+|||||..                         ..++||+.++|++|+++|++++++||++. .......++
T Consensus        26 ~~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~-~~~~~~~l~  104 (187)
T 2wm8_A           26 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSE-IEGANQLLE  104 (187)
T ss_dssp             SCSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCSC-HHHHHHHHH
T ss_pred             ccCEEEEcCCCCcchHHHhhccCcchhhhcccchhhccCcccCcchhHHHHHHHHHHCCceEEEEeCCCC-hHHHHHHHH
Confidence            5799999999999942                         35789999999999999999999999873 123556788


Q ss_pred             hCCCCCccccce
Q 025564           84 SLGFDPSLFAGA   95 (251)
Q Consensus        84 ~~Gl~~~~~~~I   95 (251)
                      .+|+... |+.+
T Consensus       105 ~~gl~~~-f~~~  115 (187)
T 2wm8_A          105 LFDLFRY-FVHR  115 (187)
T ss_dssp             HTTCTTT-EEEE
T ss_pred             HcCcHhh-ccee
Confidence            8999887 6765

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=99.05  E-value=7.9e-11  Score=96.82  Aligned_cols=110  Identities=17%  Similarity=0.206  Sum_probs=81.0

Q ss_pred             ChHHHhcccCccEEEEeccccccCCCccC----ccHHHH-------HHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           20 GLRHIAETRRFKAWLLDQFGVLHDGKKPY----PGAIST-------LEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        20 ~~~~~~~~~~~~~~l~D~DGvL~~g~~~~----pGa~e~-------L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      ++.+.+.  ++++++||+||||+++...+    +++.++       |+.|+++|++++++||+++.  .+...++++|+.
T Consensus        11 ~~~~~~~--~ik~vifD~DGtL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~--~~~~~l~~lgl~   86 (191)
T 3n1u_A           11 ELLEKAK--KIKCLICDVDGVLSDGLLHIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQNA--VVDHRMEQLGIT   86 (191)
T ss_dssp             HHHHHHH--TCSEEEECSTTTTBCSCCEECTTCCEECCBCHHHHHHHHHHHHTTCEEEEECSCCSH--HHHHHHHHHTCC
T ss_pred             HHHHHHh--cCCEEEEeCCCCCCCCceeecCCchhhhhccccChHHHHHHHHCCCeEEEEeCcChH--HHHHHHHHcCCc
Confidence            4566777  89999999999999976544    556667       99999999999999998753  356788899999


Q ss_pred             CccccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564           89 PSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus        89 ~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      .. |+.+..........+++.+.+     ...++.+|.+......++..|+
T Consensus        87 ~~-~~~~kpk~~~~~~~~~~~~~~-----~~~~~~vGD~~~Di~~~~~ag~  131 (191)
T 3n1u_A           87 HY-YKGQVDKRSAYQHLKKTLGLN-----DDEFAYIGDDLPDLPLIQQVGL  131 (191)
T ss_dssp             EE-ECSCSSCHHHHHHHHHHHTCC-----GGGEEEEECSGGGHHHHHHSSE
T ss_pred             cc-eeCCCChHHHHHHHHHHhCCC-----HHHEEEECCCHHHHHHHHHCCC
Confidence            87 677777777777777665432     2456667754433334555565

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.03  E-value=1.3e-10  Score=96.13  Aligned_cols=112  Identities=17%  Similarity=0.157  Sum_probs=78.5

Q ss_pred             CChHHHhcccCccEEEEeccccccCCCccC----ccHHHH-------HHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPY----PGAIST-------LEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~----pGa~e~-------L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      +.+.+...  ++++++||+||||+++...+    +.+.++       |+.|+++|++++++||+++.  .....++++|+
T Consensus        16 ~~~~~~~~--~ik~vifD~DGtL~d~~~~~~~~~~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~--~~~~~l~~lgi   91 (195)
T 3n07_A           16 PSLLEIAK--QIKLLICDVDGVFSDGLIYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRSQ--IVENRMKALGI   91 (195)
T ss_dssp             HHHHHHHH--TCCEEEECSTTTTSCSCCEECTTSCEECCCCTTHHHHHHHHHHTTCEEEEECSSCCH--HHHHHHHHTTC
T ss_pred             HHHHHHHh--CCCEEEEcCCCCcCCCcEEEccCchhhheeecccHHHHHHHHHCCCEEEEEECcCHH--HHHHHHHHcCC
Confidence            34556667  89999999999999854322    345555       99999999999999998753  35577889999


Q ss_pred             CCccccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCce
Q 025564           88 DPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLK  140 (251)
Q Consensus        88 ~~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~  140 (251)
                      ... |..+.........++++.+.+     ...++.+|.+..+...++..|+.
T Consensus        92 ~~~-~~~~k~k~~~~~~~~~~~~~~-----~~~~~~vGD~~nDi~~~~~ag~~  138 (195)
T 3n07_A           92 SLI-YQGQDDKVQAYYDICQKLAIA-----PEQTGYIGDDLIDWPVMEKVALR  138 (195)
T ss_dssp             CEE-ECSCSSHHHHHHHHHHHHCCC-----GGGEEEEESSGGGHHHHTTSSEE
T ss_pred             cEE-eeCCCCcHHHHHHHHHHhCCC-----HHHEEEEcCCHHHHHHHHHCCCE
Confidence            977 577666666666666655432     14566677654444455666653

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=98.98  E-value=7.1e-10  Score=92.14  Aligned_cols=79  Identities=22%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             hhccCChHHHhcccCccEEEEeccccccCCC---------ccCccHHHHHHHHHHCCCeEEEEeCCCCC-----------
Q 025564           15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRR-----------   74 (251)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~l~D~DGvL~~g~---------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-----------   74 (251)
                      ...++....+..  ++++++||+||||+++.         .++||+.++|++|+++|++++++||+++.           
T Consensus        12 ~~~~~~~~~m~~--~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~   89 (211)
T 2gmw_A           12 SGLVPRGSHMAK--SVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFE   89 (211)
T ss_dssp             --------------CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHH
T ss_pred             ccccccchhhhh--cCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHH
Confidence            334445555555  78999999999999886         88999999999999999999999998831           


Q ss_pred             --chhHHHHhHhCCCCCccccceeec
Q 025564           75 --ASTTIDKLKSLGFDPSLFAGAITS   98 (251)
Q Consensus        75 --~~~~~~~L~~~Gl~~~~~~~Iits   98 (251)
                        ...+...|+++|+.   |+.++.+
T Consensus        90 ~~~~~~~~~l~~~gl~---f~~~~~~  112 (211)
T 2gmw_A           90 TLTEWMDWSLADRDVD---LDGIYYC  112 (211)
T ss_dssp             HHHHHHHHHHHHTTCC---CSEEEEE
T ss_pred             HHHHHHHHHHHHcCCc---eEEEEEC
Confidence              13355678888987   3555543

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=98.98  E-value=3.6e-10  Score=97.54  Aligned_cols=70  Identities=23%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             CccEEEEeccccccCC--------------------------CccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHH
Q 025564           29 RFKAWLLDQFGVLHDG--------------------------KKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDK   81 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g--------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~   81 (251)
                      ++++|+||+||||+++                          ..++||+.++|+.|+++|++++|+||++. ....+...
T Consensus        58 ~~kavifDlDGTLld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~  137 (258)
T 2i33_A           58 KKPAIVLDLDETVLDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIKN  137 (258)
T ss_dssp             SEEEEEECSBTTTEECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHH
T ss_pred             CCCEEEEeCcccCcCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHH
Confidence            7899999999999998                          67899999999999999999999999874 34456788


Q ss_pred             hHhCCCCC-ccccceeech
Q 025564           82 LKSLGFDP-SLFAGAITSG   99 (251)
Q Consensus        82 L~~~Gl~~-~~~~~Iits~   99 (251)
                      |+.+|+.. . +..++.+.
T Consensus       138 L~~~Gl~~v~-~~~vi~~~  155 (258)
T 2i33_A          138 LERVGAPQAT-KEHILLQD  155 (258)
T ss_dssp             HHHHTCSSCS-TTTEEEEC
T ss_pred             HHHcCCCcCC-CceEEECC
Confidence            99999982 3 24444444

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=98.94  E-value=2.6e-09  Score=88.38  Aligned_cols=86  Identities=19%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH---------HHHHhccCchhhhhc
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT---------HQYLLRRDDAWFAAL  117 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~---------~~~L~~~~~~~~~~~  117 (251)
                      ++||+.++|+.|+++|++++++||+++  ......++++|+... |+.++++.+..         ...+++.+.+     
T Consensus       104 ~~~~~~~~l~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~-f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~-----  175 (231)
T 3kzx_A          104 LNDGAIELLDTLKENNITMAIVSNKNG--ERLRSEIHHKNLTHY-FDSIIGSGDTGTIKPSPEPVLAALTNINIE-----  175 (231)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHTTCGGG-CSEEEEETSSSCCTTSSHHHHHHHHHHTCC-----
T ss_pred             ECcCHHHHHHHHHHCCCeEEEEECCCH--HHHHHHHHHCCchhh-eeeEEcccccCCCCCChHHHHHHHHHcCCC-----
Confidence            468889999999999999999999764  235577889999987 68888876432         2222222221     


Q ss_pred             CC-eEEEeccCCcccccccCCCce
Q 025564          118 GR-SCIHMTWSDRGAISLEGLGLK  140 (251)
Q Consensus       118 g~-~~~~~g~~~~~~~~l~~~g~~  140 (251)
                      -. .++.+|.+..+...++..|+.
T Consensus       176 ~~~~~v~vGD~~~Di~~a~~aG~~  199 (231)
T 3kzx_A          176 PSKEVFFIGDSISDIQSAIEAGCL  199 (231)
T ss_dssp             CSTTEEEEESSHHHHHHHHHTTCE
T ss_pred             cccCEEEEcCCHHHHHHHHHCCCe
Confidence            13 566677544333455666653

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=98.93  E-value=6.4e-10  Score=90.83  Aligned_cols=112  Identities=18%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             CChHHHhcccCccEEEEeccccccCCCccCcc-----------HHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPG-----------AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pG-----------a~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      +.+.+...  .+++++||+||||+++...++.           -..+|++|+++|++++++||+++.  .....++++|+
T Consensus        17 ~~~~~~~~--~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~v~ivT~~~~~--~~~~~l~~lgl   92 (188)
T 2r8e_A           17 ADVMAKAE--NIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAK--LVEDRCATLGI   92 (188)
T ss_dssp             HHHHHHHH--TCSEEEECCCCCCBCSEEEEETTSCEEEEEEHHHHHHHHHHHTTTCEEEEECSSCCH--HHHHHHHHHTC
T ss_pred             HHHHHHHh--cCCEEEEeCCCCcCCCCEEecCCCcEEEEeecccHHHHHHHHHCCCeEEEEeCCChH--HHHHHHHHcCC
Confidence            34567777  8999999999999985433221           123799999999999999998753  35567788899


Q ss_pred             CCccccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCce
Q 025564           88 DPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLK  140 (251)
Q Consensus        88 ~~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~  140 (251)
                      ... |.............+++.+.+     ...++.+|.+......++..|+.
T Consensus        93 ~~~-~~~~kpk~~~~~~~~~~~g~~-----~~~~~~iGD~~~Di~~a~~ag~~  139 (188)
T 2r8e_A           93 THL-YQGQSNKLIAFSDLLEKLAIA-----PENVAYVGDDLIDWPVMEKVGLS  139 (188)
T ss_dssp             CEE-ECSCSCSHHHHHHHHHHHTCC-----GGGEEEEESSGGGHHHHTTSSEE
T ss_pred             cee-ecCCCCCHHHHHHHHHHcCCC-----HHHEEEECCCHHHHHHHHHCCCE
Confidence            866 566556666666666554432     13566677544333345556653

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=98.92  E-value=5.8e-10  Score=88.51  Aligned_cols=105  Identities=15%  Similarity=0.119  Sum_probs=71.6

Q ss_pred             cCccEEEEeccccccCCCccCcc-----------HHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccccee
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYPG-----------AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~pG-----------a~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Ii   96 (251)
                      +.+++++||+||||+++...++.           -..+|+.|+++|++++++||+++.  .....++++|+... |..+-
T Consensus         2 ~~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~--~~~~~~~~~gl~~~-~~~~k   78 (164)
T 3e8m_A            2 KEIKLILTDIDGVWTDGGMFYDQTGNEWKKFNTSDSAGIFWAHNKGIPVGILTGEKTE--IVRRRAEKLKVDYL-FQGVV   78 (164)
T ss_dssp             CCCCEEEECSTTTTSSSEEEECSSSCEEEEEEGGGHHHHHHHHHTTCCEEEECSSCCH--HHHHHHHHTTCSEE-ECSCS
T ss_pred             CcceEEEEcCCCceEcCcEEEcCCCcEEEEecCChHHHHHHHHHCCCEEEEEeCCChH--HHHHHHHHcCCCEe-ecccC
Confidence            47899999999999996532211           122499999999999999998743  35577888999877 57665


Q ss_pred             echhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCce
Q 025564           97 TSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLK  140 (251)
Q Consensus        97 ts~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~  140 (251)
                      .........+++.+.+     ...++.+|.+......++..|+.
T Consensus        79 pk~~~~~~~~~~~~~~-----~~~~~~vGD~~~Di~~~~~ag~~  117 (164)
T 3e8m_A           79 DKLSAAEELCNELGIN-----LEQVAYIGDDLNDAKLLKRVGIA  117 (164)
T ss_dssp             CHHHHHHHHHHHHTCC-----GGGEEEECCSGGGHHHHTTSSEE
T ss_pred             ChHHHHHHHHHHcCCC-----HHHEEEECCCHHHHHHHHHCCCe
Confidence            5566666666655432     14566677554333455566653

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=98.92  E-value=1e-09  Score=88.96  Aligned_cols=104  Identities=15%  Similarity=0.153  Sum_probs=71.7

Q ss_pred             CccEEEEeccccccCCCc-----------cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceee
Q 025564           29 RFKAWLLDQFGVLHDGKK-----------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~-----------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iit   97 (251)
                      .+++++||+||||+++..           ..+...++|++|+++|++++++||++..  .....++++|+... |+....
T Consensus         7 ~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~--~~~~~~~~lgl~~~-~~~~k~   83 (180)
T 1k1e_A            7 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSP--ILRRRIADLGIKLF-FLGKLE   83 (180)
T ss_dssp             GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCH--HHHHHHHHHTCCEE-EESCSC
T ss_pred             CCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcH--HHHHHHHHcCCcee-ecCCCC
Confidence            689999999999998742           3457889999999999999999998753  35567788999876 555545


Q ss_pred             chhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCce
Q 025564           98 SGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLK  140 (251)
Q Consensus        98 s~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~  140 (251)
                      ........+++.+.+     ...++.+|.+......++..|+.
T Consensus        84 k~~~~~~~~~~~~~~-----~~~~~~vGD~~~Di~~~~~ag~~  121 (180)
T 1k1e_A           84 KETACFDLMKQAGVT-----AEQTAYIGDDSVDLPAFAACGTS  121 (180)
T ss_dssp             HHHHHHHHHHHHTCC-----GGGEEEEECSGGGHHHHHHSSEE
T ss_pred             cHHHHHHHHHHcCCC-----HHHEEEECCCHHHHHHHHHcCCe
Confidence            555555555544322     14566677554333345555553

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=98.89  E-value=4.2e-09  Score=88.97  Aligned_cols=120  Identities=16%  Similarity=0.208  Sum_probs=74.2

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH---------HHHhccCchhhhhc
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH---------QYLLRRDDAWFAAL  117 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~---------~~L~~~~~~~~~~~  117 (251)
                      ++||+.++++.|+++|++++++||+.+    ....|+++|+... |+.+++++++..         ..+++.+.+     
T Consensus        96 ~~pg~~~ll~~L~~~g~~i~i~t~~~~----~~~~l~~~gl~~~-fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~-----  165 (243)
T 4g9b_A           96 VLPGIRSLLADLRAQQISVGLASVSLN----APTILAALELREF-FTFCADASQLKNSKPDPEIFLAACAGLGVP-----  165 (243)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEECCCCTT----HHHHHHHTTCGGG-CSEECCGGGCSSCTTSTHHHHHHHHHHTSC-----
T ss_pred             ccccHHHHHHhhhcccccceecccccc----hhhhhhhhhhccc-cccccccccccCCCCcHHHHHHHHHHcCCC-----
Confidence            579999999999999999999998653    2356888999988 799999887542         111111111     


Q ss_pred             CCeEEEeccCCcccccccCCCceec---CCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCCcE
Q 025564          118 GRSCIHMTWSDRGAISLEGLGLKVV---ENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM  188 (251)
Q Consensus       118 g~~~~~~g~~~~~~~~l~~~g~~~~---~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~~l  188 (251)
                      -..|+++|.+..+....+..|+..+   .....++.++=           ....++++++...++. +.+...|
T Consensus       166 p~e~l~VgDs~~di~aA~~aG~~~I~V~~g~~~ad~~~~-----------~~~~l~~~~l~~~~~~-l~~~l~~  227 (243)
T 4g9b_A          166 PQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLP-----------STESLTWPRLSAFWQN-VAENLYF  227 (243)
T ss_dssp             GGGEEEEESSHHHHHHHHHHTCEEEEESTTCCSCSEEES-----------SGGGCCHHHHHHHHHH-HSCCGGG
T ss_pred             hHHEEEEcCCHHHHHHHHHcCCEEEEECCCCCcHHHhcC-----------ChhhcCHHHHHHHHHH-HHHHhhh
Confidence            1356666654333334455565422   11233443321           1245788999988876 3443333

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=98.88  E-value=2.6e-09  Score=85.75  Aligned_cols=57  Identities=23%  Similarity=0.381  Sum_probs=47.1

Q ss_pred             ccEEEEeccccccCCC----------ccCccHHHHHHHHHHCCCeEEEEeCCCCC-----c--------hhHHHHhHhCC
Q 025564           30 FKAWLLDQFGVLHDGK----------KPYPGAISTLEMLATTGAKMVVISNSSRR-----A--------STTIDKLKSLG   86 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~----------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-----~--------~~~~~~L~~~G   86 (251)
                      +|+++||+||||++..          +++||+.++|++|+++|++++++||+++.     .        +.+...|+++|
T Consensus         1 ~k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g   80 (179)
T 3l8h_A            1 MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMG   80 (179)
T ss_dssp             CCEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCC
Confidence            4789999999999764          58999999999999999999999998741     1        23456677888

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=98.85  E-value=1.3e-09  Score=89.24  Aligned_cols=108  Identities=19%  Similarity=0.194  Sum_probs=72.5

Q ss_pred             HHHhcccCccEEEEeccccccCCCccCccH-----------HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGA-----------ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        22 ~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa-----------~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .+-..  ++++++||+||||+++...+...           ..+|++|+++|++++++||+++.  .....++++|+...
T Consensus        13 ~~~~~--~ik~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~~--~~~~~~~~lgl~~~   88 (189)
T 3mn1_A           13 MQRGK--AIKLAVFDVDGVLTDGRLYFMEDGSEIKTFNTLDGQGIKMLIASGVTTAIISGRKTA--IVERRAKSLGIEHL   88 (189)
T ss_dssp             HHHHH--TCCEEEECSTTTTSCSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHHHHHHTCSEE
T ss_pred             HHHHH--hCCEEEEcCCCCcCCccEeeccCCcEeeeeccccHHHHHHHHHCCCEEEEEECcChH--HHHHHHHHcCCHHH
Confidence            44455  89999999999999875432221           13899999999999999998753  35577888999877


Q ss_pred             cccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564           91 LFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus        91 ~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                       |..+....+.....+++.+.+     ...++.+|.+..+...++..|+
T Consensus        89 -f~~~~~K~~~~~~~~~~~g~~-----~~~~~~vGD~~nDi~~~~~ag~  131 (189)
T 3mn1_A           89 -FQGREDKLVVLDKLLAELQLG-----YEQVAYLGDDLPDLPVIRRVGL  131 (189)
T ss_dssp             -ECSCSCHHHHHHHHHHHHTCC-----GGGEEEEECSGGGHHHHHHSSE
T ss_pred             -hcCcCChHHHHHHHHHHcCCC-----hhHEEEECCCHHHHHHHHHCCC
Confidence             577655555455555544432     1456667765443344555554

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=98.85  E-value=5.6e-09  Score=87.09  Aligned_cols=51  Identities=27%  Similarity=0.453  Sum_probs=42.4

Q ss_pred             CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      +||+.++|+.|+++|++++++||+++.  .+...++++|+... |+.++++.++
T Consensus       107 ~~~~~~~l~~l~~~g~~~~i~s~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~~  157 (240)
T 2no4_A          107 YPDAAETLEKLKSAGYIVAILSNGNDE--MLQAALKASKLDRV-LDSCLSADDL  157 (240)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHTTCGGG-CSEEEEGGGT
T ss_pred             CCCHHHHHHHHHHCCCEEEEEcCCCHH--HHHHHHHhcCcHHH-cCEEEEcccc
Confidence            489999999999999999999998742  35567888999887 6888887653

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=98.80  E-value=5.4e-09  Score=86.18  Aligned_cols=65  Identities=25%  Similarity=0.247  Sum_probs=50.4

Q ss_pred             CccEEEEeccccccCCC--------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccc
Q 025564           29 RFKAWLLDQFGVLHDGK--------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG   94 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~--------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~   94 (251)
                      .+++++||+||||.+..              .++||+.++|++|+++|++++++||+++..  . .++.  +  .. |+.
T Consensus         5 ~~kav~fDlDGTL~d~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~--~-~~~~--~--~~-~d~   76 (196)
T 2oda_A            5 TFPALLFGLSGCLVDFGAQAATSDTPDDEHAQLTPGAQNALKALRDQGMPCAWIDELPEAL--S-TPLA--A--PV-NDW   76 (196)
T ss_dssp             CCSCEEEETBTTTBCTTSTTTSCSSCCGGGGSBCTTHHHHHHHHHHHTCCEEEECCSCHHH--H-HHHH--T--TT-TTT
T ss_pred             cCCEEEEcCCCceEeccccccchhhcccccCCcCcCHHHHHHHHHHCCCEEEEEcCChHHH--H-HHhc--C--cc-CCE
Confidence            78999999999998732              678999999999999999999999876422  2 2232  2  23 577


Q ss_pred             eeechhh
Q 025564           95 AITSGEL  101 (251)
Q Consensus        95 Iits~~~  101 (251)
                      +++++++
T Consensus        77 v~~~~~~   83 (196)
T 2oda_A           77 MIAAPRP   83 (196)
T ss_dssp             CEECCCC
T ss_pred             EEECCcC
Confidence            8887764

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=98.77  E-value=1.2e-08  Score=82.53  Aligned_cols=67  Identities=25%  Similarity=0.338  Sum_probs=54.8

Q ss_pred             CccEEEEeccccccCC------------CccCccHHHHHHHHHHCCCeEEEEeCCCC-------------CchhHHHHhH
Q 025564           29 RFKAWLLDQFGVLHDG------------KKPYPGAISTLEMLATTGAKMVVISNSSR-------------RASTTIDKLK   83 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-------------~~~~~~~~L~   83 (251)
                      .+++++||+||||+..            ..++||+.++|+.|+++|++++++||++.             ....+...|+
T Consensus        13 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~   92 (176)
T 2fpr_A           13 SQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFT   92 (176)
T ss_dssp             CCEEEEECSBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHH
T ss_pred             cCcEEEEeCCCCeEcCCCCCcCcCCHHHCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHHH
Confidence            7899999999999865            36799999999999999999999999842             1234556788


Q ss_pred             hCCCCCccccceeec
Q 025564           84 SLGFDPSLFAGAITS   98 (251)
Q Consensus        84 ~~Gl~~~~~~~Iits   98 (251)
                      ++|+.   |+.++.+
T Consensus        93 ~~gl~---fd~v~~s  104 (176)
T 2fpr_A           93 SQGVQ---FDEVLIC  104 (176)
T ss_dssp             HTTCC---EEEEEEE
T ss_pred             HcCCC---eeEEEEc
Confidence            89987   4777654

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=98.76  E-value=1e-08  Score=80.65  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=50.9

Q ss_pred             cCccEEEEeccccccCCC-----ccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGK-----KPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDP   89 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~-----~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~   89 (251)
                      |+++.++||+||||++..     ++.|++.++|++|+++|++++++|+.+ +........|+++|++.
T Consensus         1 m~~k~i~~DlDGTL~~~~~~~i~~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~   68 (142)
T 2obb_A            1 SNAMTIAVDFDGTIVEHRYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEF   68 (142)
T ss_dssp             -CCCEEEECCBTTTBCSCTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCC
T ss_pred             CCCeEEEEECcCCCCCCCCccccccCHHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCe
Confidence            578999999999999865     357999999999999999999999976 33345667788888863

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=98.76  E-value=1.5e-08  Score=83.11  Aligned_cols=54  Identities=19%  Similarity=0.441  Sum_probs=46.0

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++++.|+++|++++++||+++.  .....++.+|+..+ |+.+++++++.
T Consensus        84 ~~~pg~~~~l~~L~~~g~~~~i~tn~~~~--~~~~~l~~~~l~~~-fd~~~~~~~~~  137 (216)
T 3kbb_A           84 KENPGVREALEFVKSKRIKLALATSTPQR--EALERLRRLDLEKY-FDVMVFGDQVK  137 (216)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHTTCGGG-CSEEECGGGSS
T ss_pred             ccCccHHHHHHHHHHcCCCcccccCCcHH--HHHHHHHhcCCCcc-ccccccccccC
Confidence            57899999999999999999999998743  35577889999998 79999887653

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=98.75  E-value=8.1e-09  Score=84.14  Aligned_cols=70  Identities=26%  Similarity=0.511  Sum_probs=56.8

Q ss_pred             cCccEEEEeccccccCC------------------------------------------------CccCccHHHHHHHHH
Q 025564           28 RRFKAWLLDQFGVLHDG------------------------------------------------KKPYPGAISTLEMLA   59 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g------------------------------------------------~~~~pGa~e~L~~L~   59 (251)
                      |++++++||+||||++.                                                ..++||+.++|+.|+
T Consensus         4 ~~~k~iifDlDGTL~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~   83 (205)
T 3m9l_A            4 SEIKHWVFDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLEHERDLAQGSRPAPGAVELVRELA   83 (205)
T ss_dssp             GGCCEEEECTBTTTEEEEECHHHHHHHTTCCTTSCHHHHHHHSCHHHHHHHHHHHHHTHHHHEEEEEECTTHHHHHHHHH
T ss_pred             ccCCEEEEeCCCcCcccHHHHHHHHHHhCCCchHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence            47899999999999862                                                145789999999999


Q ss_pred             HCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc--cceeechh
Q 025564           60 TTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF--AGAITSGE  100 (251)
Q Consensus        60 ~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~--~~Iits~~  100 (251)
                      ++|++++++||+++.  .....++.+|+... |  +.++++..
T Consensus        84 ~~g~~~~i~s~~~~~--~~~~~l~~~~l~~~-f~~~~i~~~~~  123 (205)
T 3m9l_A           84 GRGYRLGILTRNARE--LAHVTLEAIGLADC-FAEADVLGRDE  123 (205)
T ss_dssp             HTTCEEEEECSSCHH--HHHHHHHHTTCGGG-SCGGGEECTTT
T ss_pred             hcCCeEEEEeCCchH--HHHHHHHHcCchhh-cCcceEEeCCC
Confidence            999999999998742  35577888999877 7  66776553

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=98.75  E-value=2.8e-09  Score=86.24  Aligned_cols=102  Identities=15%  Similarity=0.139  Sum_probs=67.5

Q ss_pred             CccEEEEeccccccCCCccC----ccHHH-------HHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceee
Q 025564           29 RFKAWLLDQFGVLHDGKKPY----PGAIS-------TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~----pGa~e-------~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iit   97 (251)
                      ++++++||+||||+++...+    .....       +|++|+++|++++++||+++..  ....++++|++ . +.....
T Consensus        11 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~~~--~~~~~~~lgi~-~-~~~~~~   86 (176)
T 3mmz_A           11 DIDAVVLDFDGTQTDDRVLIDSDGREFVSVHRGDGLGIAALRKSGLTMLILSTEQNPV--VAARARKLKIP-V-LHGIDR   86 (176)
T ss_dssp             GCSEEEECCTTTTSCSCCEECTTCCEEEEEEHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHHHHHTCC-E-EESCSC
T ss_pred             cCCEEEEeCCCCcCcCCEeecCCccHhHhcccccHHHHHHHHHCCCeEEEEECcChHH--HHHHHHHcCCe-e-EeCCCC
Confidence            68999999999999954332    11111       4999999999999999987533  55677888998 5 455555


Q ss_pred             chhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564           98 SGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus        98 s~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      ........+++.+.+     ...++.+|.+..+...++..|+
T Consensus        87 k~~~l~~~~~~~~~~-----~~~~~~vGD~~nD~~~~~~ag~  123 (176)
T 3mmz_A           87 KDLALKQWCEEQGIA-----PERVLYVGNDVNDLPCFALVGW  123 (176)
T ss_dssp             HHHHHHHHHHHHTCC-----GGGEEEEECSGGGHHHHHHSSE
T ss_pred             hHHHHHHHHHHcCCC-----HHHEEEEcCCHHHHHHHHHCCC
Confidence            555555555554432     1456667765443344555554

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=98.74  E-value=1.3e-08  Score=85.03  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=73.8

Q ss_pred             hHHHhcccCccEEEEeccccccCCCccCc---------cH--HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           21 LRHIAETRRFKAWLLDQFGVLHDGKKPYP---------GA--ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        21 ~~~~~~~~~~~~~l~D~DGvL~~g~~~~p---------Ga--~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      +.+-+.  .+++++||+||||.++...+.         +.  ..+|+.|+++|++++++||+++.  .....++++|+..
T Consensus        42 l~~~~~--~ik~viFDlDGTL~Ds~~~~~~~~~~~~~~~~~d~~~L~~L~~~G~~l~I~T~~~~~--~~~~~l~~lgi~~  117 (211)
T 3ij5_A           42 VIQRAA--NIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYGIRCLITSDIDVAIITGRRAK--LLEDRANTLGITH  117 (211)
T ss_dssp             HHHHHT--TCSEEEECCTTTTSSSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHHHHHHTCCE
T ss_pred             HHHHHh--CCCEEEEeCCCCEECCHHHHhhhhHHHHHhccchHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHHHcCCch
Confidence            444445  799999999999998642211         11  12799999999999999998753  3557788899987


Q ss_pred             ccccceeechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCce
Q 025564           90 SLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLK  140 (251)
Q Consensus        90 ~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~  140 (251)
                      . |..+-.........+++.+.+     ...+..+|.+..+...++..|+.
T Consensus       118 ~-f~~~k~K~~~l~~~~~~lg~~-----~~~~~~vGDs~nDi~~~~~ag~~  162 (211)
T 3ij5_A          118 L-YQGQSDKLVAYHELLATLQCQ-----PEQVAYIGDDLIDWPVMAQVGLS  162 (211)
T ss_dssp             E-ECSCSSHHHHHHHHHHHHTCC-----GGGEEEEECSGGGHHHHTTSSEE
T ss_pred             h-hcccCChHHHHHHHHHHcCcC-----cceEEEEcCCHHHHHHHHHCCCE
Confidence            7 577655555555555554432     24566677654444456666654

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=98.72  E-value=7.3e-09  Score=86.14  Aligned_cols=64  Identities=20%  Similarity=0.284  Sum_probs=53.8

Q ss_pred             HHhcccCccEEEEeccccccCC---------CccCccHHHHHHHHHHCCCeEEEEeCCCCCc-------------hhHHH
Q 025564           23 HIAETRRFKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSRRA-------------STTID   80 (251)
Q Consensus        23 ~~~~~~~~~~~l~D~DGvL~~g---------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~-------------~~~~~   80 (251)
                      .+.+  .+++++||+||||+++         .+++||+.++|++|+++|++++++||+++..             ..+..
T Consensus        26 ~~~~--~~k~i~~D~DGtl~~~~~y~~~~~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~  103 (218)
T 2o2x_A           26 VFPP--HLPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLE  103 (218)
T ss_dssp             CCCS--SCCCEEECSBTTTBCCCSCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHH
T ss_pred             chhh--cCCEEEEeCCCCcCCCCcccCCcccCeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHH
Confidence            3455  7899999999999998         7899999999999999999999999987411             24566


Q ss_pred             HhHhCCCC
Q 025564           81 KLKSLGFD   88 (251)
Q Consensus        81 ~L~~~Gl~   88 (251)
                      .|+++|+.
T Consensus       104 ~l~~~gl~  111 (218)
T 2o2x_A          104 LLREEGVF  111 (218)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCc
Confidence            78888875

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=98.71  E-value=4.6e-08  Score=81.01  Aligned_cols=41  Identities=10%  Similarity=0.118  Sum_probs=34.3

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      ++||+.++|+.|+++|++++++||+.+.  .+...++++|++.
T Consensus        93 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~--~~~~~~~~~g~~~  133 (232)
T 3fvv_A           93 LTVQAVDVVRGHLAAGDLCALVTATNSF--VTAPIARAFGVQH  133 (232)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHTTCCE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHHHcCCCE
Confidence            4899999999999999999999998742  3456778899874

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=98.71  E-value=1e-08  Score=84.34  Aligned_cols=50  Identities=24%  Similarity=0.341  Sum_probs=41.4

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~   99 (251)
                      .++||+.++|+.|++ |++++++||+++.  .....|+++|+..+ |+.+++++
T Consensus        84 ~~~~g~~~~l~~L~~-~~~l~i~T~~~~~--~~~~~l~~~gl~~~-f~~i~~~~  133 (210)
T 2ah5_A           84 QLFPQIIDLLEELSS-SYPLYITTTKDTS--TAQDMAKNLEIHHF-FDGIYGSS  133 (210)
T ss_dssp             EECTTHHHHHHHHHT-TSCEEEEEEEEHH--HHHHHHHHTTCGGG-CSEEEEEC
T ss_pred             CCCCCHHHHHHHHHc-CCeEEEEeCCCHH--HHHHHHHhcCchhh-eeeeecCC
Confidence            457999999999999 9999999997642  25567889999988 78888775

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=98.70  E-value=1.8e-08  Score=83.33  Aligned_cols=52  Identities=19%  Similarity=0.363  Sum_probs=42.6

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ++||+.++|+.|+++|++++++||+++.  .....|+++|+... |+.++++.+.
T Consensus        96 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~~  147 (232)
T 1zrn_A           96 PFSEVPDSLRELKRRGLKLAILSNGSPQ--SIDAVVSHAGLRDG-FDHLLSVDPV  147 (232)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHTTCGGG-CSEEEESGGG
T ss_pred             CCccHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHHhcChHhh-hheEEEeccc
Confidence            3589999999999999999999998742  35567888999887 6888887653

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=98.69  E-value=1.6e-08  Score=83.80  Aligned_cols=85  Identities=13%  Similarity=0.184  Sum_probs=56.8

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH---------HHHHhccCchhhhhc
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT---------HQYLLRRDDAWFAAL  117 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~---------~~~L~~~~~~~~~~~  117 (251)
                      ++||+.++|+.|+++|++++++||+.+  ......++++|+... |+.++++..+.         ...+++.+.+     
T Consensus       105 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~lg~~-----  176 (237)
T 4ex6_A          105 LYPGVLEGLDRLSAAGFRLAMATSKVE--KAARAIAELTGLDTR-LTVIAGDDSVERGKPHPDMALHVARGLGIP-----  176 (237)
T ss_dssp             BCTTHHHHHHHHHHTTEEEEEECSSCH--HHHHHHHHHHTGGGT-CSEEECTTTSSSCTTSSHHHHHHHHHHTCC-----
T ss_pred             cCCCHHHHHHHHHhCCCcEEEEcCCCh--HHHHHHHHHcCchhh-eeeEEeCCCCCCCCCCHHHHHHHHHHcCCC-----
Confidence            678999999999999999999999874  235567788899887 68888876532         2222222221     


Q ss_pred             CCeEEEeccCCcccccccCCCc
Q 025564          118 GRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus       118 g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      ...++.+|.+..+...++..|+
T Consensus       177 ~~~~i~vGD~~~Di~~a~~aG~  198 (237)
T 4ex6_A          177 PERCVVIGDGVPDAEMGRAAGM  198 (237)
T ss_dssp             GGGEEEEESSHHHHHHHHHTTC
T ss_pred             HHHeEEEcCCHHHHHHHHHCCC
Confidence            1356667754333334555665

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.68  E-value=1.5e-08  Score=93.02  Aligned_cols=70  Identities=26%  Similarity=0.278  Sum_probs=56.2

Q ss_pred             CccEEEEeccccccCCC-------------ccCccHHHHHHHHHHCCCeEEEEeCCCC------Cch----hHHHHhHhC
Q 025564           29 RFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSR------RAS----TTIDKLKSL   85 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~-------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~------~~~----~~~~~L~~~   85 (251)
                      ++++++||+||||+...             .++||+.++|+.|+++|++++|+||++.      +..    .+...|+++
T Consensus        57 ~~k~v~fD~DGTL~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~l  136 (416)
T 3zvl_A           57 QGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKL  136 (416)
T ss_dssp             CSSEEEECSBTTTEECSSCSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCccccCCCccCCCCHHHhhhhcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHc
Confidence            68999999999998654             3789999999999999999999999761      111    245678889


Q ss_pred             CCCCccccceeechhh
Q 025564           86 GFDPSLFAGAITSGEL  101 (251)
Q Consensus        86 Gl~~~~~~~Iits~~~  101 (251)
                      |+.   |+.++++++.
T Consensus       137 gl~---fd~i~~~~~~  149 (416)
T 3zvl_A          137 GVP---FQVLVATHAG  149 (416)
T ss_dssp             TSC---CEEEEECSSS
T ss_pred             CCC---EEEEEECCCC
Confidence            985   5778887754

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=98.66  E-value=4.7e-08  Score=78.80  Aligned_cols=86  Identities=13%  Similarity=0.182  Sum_probs=58.2

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH---------HHHHhccCchhhhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT---------HQYLLRRDDAWFAA  116 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~---------~~~L~~~~~~~~~~  116 (251)
                      .++||+.++|+.|++.|++++++||+++  ..+...++++|+... |+.++++....         ...+++.+.+    
T Consensus        89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~----  161 (214)
T 3e58_A           89 LIFPDVLKVLNEVKSQGLEIGLASSSVK--ADIFRALEENRLQGF-FDIVLSGEEFKESKPNPEIYLTALKQLNVQ----  161 (214)
T ss_dssp             HBCTTHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEEGGGCSSCTTSSHHHHHHHHHHTCC----
T ss_pred             CcCchHHHHHHHHHHCCCCEEEEeCCcH--HHHHHHHHHcCcHhh-eeeEeecccccCCCCChHHHHHHHHHcCCC----
Confidence            3678999999999999999999999874  335677889999887 68888876532         2222322221    


Q ss_pred             cCCeEEEeccCCcccccccCCCc
Q 025564          117 LGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus       117 ~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                       ...++.+|.+..+...++..|+
T Consensus       162 -~~~~~~iGD~~~Di~~a~~aG~  183 (214)
T 3e58_A          162 -ASRALIIEDSEKGIAAGVAADV  183 (214)
T ss_dssp             -GGGEEEEECSHHHHHHHHHTTC
T ss_pred             -hHHeEEEeccHhhHHHHHHCCC
Confidence             1356667755333334555665

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=98.64  E-value=4.7e-08  Score=80.57  Aligned_cols=51  Identities=20%  Similarity=0.333  Sum_probs=42.7

Q ss_pred             CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      +||+.++|+.|+++|++++++||+++  ......++++|+... |+.++++...
T Consensus       101 ~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  151 (233)
T 3umb_A          101 FPENVPVLRQLREMGLPLGILSNGNP--QMLEIAVKSAGMSGL-FDHVLSVDAV  151 (233)
T ss_dssp             CTTHHHHHHHHHTTTCCEEEEESSCH--HHHHHHHHTTTCTTT-CSEEEEGGGT
T ss_pred             CCCHHHHHHHHHhCCCcEEEEeCCCH--HHHHHHHHHCCcHhh-cCEEEEeccc
Confidence            78999999999999999999999874  235577889999988 6888887643

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=98.63  E-value=8.9e-08  Score=73.41  Aligned_cols=44  Identities=20%  Similarity=0.309  Sum_probs=39.1

Q ss_pred             ccEEEEeccccccCCCc-------cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           30 FKAWLLDQFGVLHDGKK-------PYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~-------~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      +++++||+||||++...       +.|++.++|++|+++|++++++||++.
T Consensus         1 ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~~   51 (126)
T 1xpj_A            1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNM   51 (126)
T ss_dssp             CCEEEECSTTTTBCCCCSCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTTT
T ss_pred             CCEEEEecCCCCCCCCCCccccCCCCHHHHHHHHHHHhCCCeEEEEeCCCh
Confidence            47899999999998653       568999999999999999999999874

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=98.63  E-value=1.5e-07  Score=79.62  Aligned_cols=115  Identities=17%  Similarity=0.252  Sum_probs=70.7

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHH---------HHHhccCchhhhhc
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH---------QYLLRRDDAWFAAL  117 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~---------~~L~~~~~~~~~~~  117 (251)
                      ++||+.++++.|++.|++++++||+.+    ....|+++|+..+ |+.|++++++..         ..+++.+..     
T Consensus       117 ~~p~~~~ll~~Lk~~g~~i~i~~~~~~----~~~~L~~~gl~~~-Fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~-----  186 (250)
T 4gib_A          117 ILPGIESLLIDVKSNNIKIGLSSASKN----AINVLNHLGISDK-FDFIADAGKCKNNKPHPEIFLMSAKGLNVN-----  186 (250)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT----HHHHHHHHTCGGG-CSEECCGGGCCSCTTSSHHHHHHHHHHTCC-----
T ss_pred             cchhHHHHHHHHHhcccccccccccch----hhhHhhhcccccc-cceeecccccCCCCCcHHHHHHHHHHhCCC-----
Confidence            578999999999999999988665432    3467889999998 799999886542         111111111     


Q ss_pred             CCeEEEeccCCcccccccCCCceec-----CCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHH
Q 025564          118 GRSCIHMTWSDRGAISLEGLGLKVV-----ENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICA  182 (251)
Q Consensus       118 g~~~~~~g~~~~~~~~l~~~g~~~~-----~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~  182 (251)
                      -.+++++|.+..+....+.+|+..+     ++...+|.++ .+          =.+++++.+.+.++..+
T Consensus       187 p~e~l~VGDs~~Di~aA~~aG~~~i~v~~~~~~~~ad~vi-~~----------l~eL~~~~i~~~~n~~~  245 (250)
T 4gib_A          187 PQNCIGIEDASAGIDAINSANMFSVGVGNYENLKKANLVV-DS----------TNQLKFEYIQEKYNEYI  245 (250)
T ss_dssp             GGGEEEEESSHHHHHHHHHTTCEEEEESCTTTTTTSSEEE-SS----------GGGCCHHHHHHHHHHHH
T ss_pred             hHHeEEECCCHHHHHHHHHcCCEEEEECChhHhccCCEEE-CC----------hHhCCHHHHHHHHHHHH
Confidence            1356666754333334555666432     1234566553 22          13567788877665433

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=98.63  E-value=6.2e-08  Score=79.55  Aligned_cols=51  Identities=27%  Similarity=0.440  Sum_probs=42.8

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ++||+.++|+.|+++|++++++||+++  ......++++|+... |+.++++..
T Consensus        97 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  147 (230)
T 3um9_A           97 PFADVPQALQQLRAAGLKTAILSNGSR--HSIRQVVGNSGLTNS-FDHLISVDE  147 (230)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHHTCGGG-CSEEEEGGG
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEeCCCH--HHHHHHHHHCCChhh-cceeEehhh
Confidence            479999999999999999999999874  335567888999887 688888765

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=98.62  E-value=6.4e-08  Score=78.08  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             CccEEEEeccccccCCCccCccH-----------HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH--hCCCCCccccce
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGA-----------ISTLEMLATTGAKMVVISNSSRRASTTIDKLK--SLGFDPSLFAGA   95 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa-----------~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~--~~Gl~~~~~~~I   95 (251)
                      +++.++||+||||+++...+...           ...|+.|+++|++++++||+ ..   ....++  ++|+. . +...
T Consensus         8 ~ikliv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~~~L~~Lk~~Gi~~~I~Tg~-~~---~~~~l~~l~lgi~-~-~~g~   81 (168)
T 3ewi_A            8 EIKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISER-AC---SKQTLSALKLDCK-T-EVSV   81 (168)
T ss_dssp             CCCEEEEECCCCCSCSCCBCCSSCCCEEEEEHHHHHHHHHHHHTTCEEEEECSS-CC---CHHHHHTTCCCCC-E-ECSC
T ss_pred             cCcEEEEeCccceECCcEEEcCCCCEEEEEecCcHHHHHHHHHCCCEEEEEeCc-HH---HHHHHHHhCCCcE-E-EECC
Confidence            89999999999999987655322           24799999999999999998 32   335566  56776 4 3333


Q ss_pred             eechhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCce
Q 025564           96 ITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLK  140 (251)
Q Consensus        96 its~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~  140 (251)
                      -........++++.+.+     ...+..+|.+......++..|+.
T Consensus        82 ~~K~~~l~~~~~~~gi~-----~~~~~~vGD~~nDi~~~~~ag~~  121 (168)
T 3ewi_A           82 SDKLATVDEWRKEMGLC-----WKEVAYLGNEVSDEECLKRVGLS  121 (168)
T ss_dssp             SCHHHHHHHHHHHTTCC-----GGGEEEECCSGGGHHHHHHSSEE
T ss_pred             CChHHHHHHHHHHcCcC-----hHHEEEEeCCHhHHHHHHHCCCE
Confidence            33334444455544432     13566667544333345555553

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=98.60  E-value=7.5e-08  Score=78.56  Aligned_cols=48  Identities=21%  Similarity=0.278  Sum_probs=39.0

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccccee
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Ii   96 (251)
                      .++||+.++|+.|+++|++++++||+.+.  .....++++|+... |+.++
T Consensus        75 ~~~~~~~~~l~~l~~~g~~~~i~S~~~~~--~~~~~l~~~gl~~~-f~~~~  122 (217)
T 3m1y_A           75 PLFEGALELVSALKEKNYKVVCFSGGFDL--ATNHYRDLLHLDAA-FSNTL  122 (217)
T ss_dssp             CBCBTHHHHHHHHHTTTEEEEEEEEEEHH--HHHHHHHHHTCSEE-EEEEE
T ss_pred             cCCCCHHHHHHHHHHCCCEEEEEcCCchh--HHHHHHHHcCcchh-cccee
Confidence            36789999999999999999999997642  24567788899877 57665

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=98.59  E-value=9.7e-08  Score=81.19  Aligned_cols=86  Identities=24%  Similarity=0.209  Sum_probs=58.7

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH---------HHHHhccCchhhhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT---------HQYLLRRDDAWFAA  116 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~---------~~~L~~~~~~~~~~  116 (251)
                      .++||+.++|+.|+++|++++++||+.+.   +...|+++|+... |+.++++.+..         ...+++.+.+    
T Consensus       106 ~~~~~~~~~l~~l~~~g~~~~i~tn~~~~---~~~~l~~~gl~~~-f~~~~~~~~~~~~Kp~~~~~~~~~~~~g~~----  177 (263)
T 3k1z_A          106 QVLDGAEDTLRECRTRGLRLAVISNFDRR---LEGILGGLGLREH-FDFVLTSEAAGWPKPDPRIFQEALRLAHME----  177 (263)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEEESCCTT---HHHHHHHTTCGGG-CSCEEEHHHHSSCTTSHHHHHHHHHHHTCC----
T ss_pred             eECcCHHHHHHHHHhCCCcEEEEeCCcHH---HHHHHHhCCcHHh-hhEEEeecccCCCCCCHHHHHHHHHHcCCC----
Confidence            36789999999999999999999996542   5678899999888 78998887542         1112222211    


Q ss_pred             cCCeEEEeccCC-cccccccCCCce
Q 025564          117 LGRSCIHMTWSD-RGAISLEGLGLK  140 (251)
Q Consensus       117 ~g~~~~~~g~~~-~~~~~l~~~g~~  140 (251)
                       ...++++|.+. .+....+..|+.
T Consensus       178 -~~~~~~vGD~~~~Di~~a~~aG~~  201 (263)
T 3k1z_A          178 -PVVAAHVGDNYLCDYQGPRAVGMH  201 (263)
T ss_dssp             -GGGEEEEESCHHHHTHHHHTTTCE
T ss_pred             -HHHEEEECCCcHHHHHHHHHCCCE
Confidence             14577777652 334455666764

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=98.59  E-value=4.5e-08  Score=80.81  Aligned_cols=51  Identities=22%  Similarity=0.229  Sum_probs=41.1

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      ++||+.++|+.|++.|++++++||+++    ....++++|+... |+.++++..+.
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~----~~~~l~~~gl~~~-f~~i~~~~~~~  143 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSRN----APKILRRLAIIDD-FHAIVDPTTLA  143 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT----HHHHHHHTTCTTT-CSEECCC----
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCchh----HHHHHHHcCcHhh-cCEEeeHhhCC
Confidence            589999999999999999999999853    4467888999988 68888887643

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=98.59  E-value=5.5e-08  Score=79.77  Aligned_cols=86  Identities=16%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH---------HHHHhccCchhhhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT---------HQYLLRRDDAWFAA  116 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~---------~~~L~~~~~~~~~~  116 (251)
                      .++||+.++|+.|+++|++++++||+.+  ......++++|+... |+.+++++...         ...+++.+.+    
T Consensus        86 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~----  158 (226)
T 3mc1_A           86 KVYDGIEALLSSLKDYGFHLVVATSKPT--VFSKQILEHFKLAFY-FDAIVGSSLDGKLSTKEDVIRYAMESLNIK----  158 (226)
T ss_dssp             CBCTTHHHHHHHHHHHTCEEEEEEEEEH--HHHHHHHHHTTCGGG-CSEEEEECTTSSSCSHHHHHHHHHHHHTCC----
T ss_pred             ccCcCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHhCCHhh-eeeeeccCCCCCCCCCHHHHHHHHHHhCcC----
Confidence            4679999999999999999999999763  335577888999987 68888876532         1222222221    


Q ss_pred             cCCeEEEeccCCcccccccCCCc
Q 025564          117 LGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus       117 ~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                       ...++.+|.+..+...++..|+
T Consensus       159 -~~~~i~iGD~~~Di~~a~~aG~  180 (226)
T 3mc1_A          159 -SDDAIMIGDREYDVIGALKNNL  180 (226)
T ss_dssp             -GGGEEEEESSHHHHHHHHTTTC
T ss_pred             -cccEEEECCCHHHHHHHHHCCC
Confidence             1356667754333345566665

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=98.59  E-value=8.9e-08  Score=79.45  Aligned_cols=52  Identities=23%  Similarity=0.440  Sum_probs=40.3

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc--cceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF--AGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~--~~Iits~~~  101 (251)
                      .++||+.++|+.|+++|++++++||+.+..  +...|++ |+... |  +.++++..+
T Consensus       108 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~--~~~~l~~-~l~~~-f~~~~~~~~~~~  161 (247)
T 3dv9_A          108 ERMPGALEVLTKIKSEGLTPMVVTGSGQTS--LLDRLNH-NFPGI-FQANLMVTAFDV  161 (247)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSCC-----CHHHHHH-HSTTT-CCGGGEECGGGC
T ss_pred             CCCCCHHHHHHHHHHcCCcEEEEcCCchHH--HHHHHHh-hHHHh-cCCCeEEecccC
Confidence            456899999999999999999999987532  3466777 88877 7  778887653

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=98.58  E-value=1e-08  Score=83.06  Aligned_cols=52  Identities=21%  Similarity=0.215  Sum_probs=37.9

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh-CCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~-~Gl~~~~~~~Iits~~~  101 (251)
                      ++||+.++|+.|+++|++++++||+++...  ...+++ +|+... |+.++++.+.
T Consensus        92 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~--~~~~~~~~~l~~~-f~~~~~~~~~  144 (206)
T 2b0c_A           92 LRPEVIAIMHKLREQGHRVVVLSNTNRLHT--TFWPEEYPEIRDA-ADHIYLSQDL  144 (206)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCCCCTT--SCCGGGCHHHHHH-CSEEEEHHHH
T ss_pred             cCccHHHHHHHHHHCCCeEEEEECCChHHH--HHHHHhccChhhh-eeeEEEeccc
Confidence            468999999999999999999999875321  122333 566666 5788887653

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=98.57  E-value=7.9e-08  Score=80.17  Aligned_cols=52  Identities=21%  Similarity=0.389  Sum_probs=41.2

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc--cceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF--AGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~--~~Iits~~~  101 (251)
                      .++||+.++|+.|+++|++++++||+++..  +...|++ |+... |  +.++++.++
T Consensus       109 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~--~~~~l~~-~l~~~-f~~d~i~~~~~~  162 (243)
T 3qxg_A          109 ERMPGAWELLQKVKSEGLTPMVVTGSGQLS--LLERLEH-NFPGM-FHKELMVTAFDV  162 (243)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECCCCCHH--HHTTHHH-HSTTT-CCGGGEECTTTC
T ss_pred             CCCCCHHHHHHHHHHcCCcEEEEeCCcHHH--HHHHHHH-hHHHh-cCcceEEeHHhC
Confidence            367899999999999999999999987532  4456777 88877 7  778877653

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=98.56  E-value=3e-07  Score=75.66  Aligned_cols=86  Identities=16%  Similarity=0.159  Sum_probs=57.5

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH---------HHHHhccC-chhhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT---------HQYLLRRD-DAWFA  115 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~---------~~~L~~~~-~~~~~  115 (251)
                      .++||+.++|+.|++. ++++++||+.+  ......++++|+... |+.++++....         ...+++.+ .+   
T Consensus       103 ~~~~~~~~~l~~l~~~-~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~---  175 (238)
T 3ed5_A          103 QLIDGAFDLISNLQQQ-FDLYIVTNGVS--HTQYKRLRDSGLFPF-FKDIFVSEDTGFQKPMKEYFNYVFERIPQFS---  175 (238)
T ss_dssp             CBCTTHHHHHHHHHTT-SEEEEEECSCH--HHHHHHHHHTTCGGG-CSEEEEGGGTTSCTTCHHHHHHHHHTSTTCC---
T ss_pred             CCCccHHHHHHHHHhc-CeEEEEeCCCH--HHHHHHHHHcChHhh-hheEEEecccCCCCCChHHHHHHHHHcCCCC---
Confidence            3578999999999999 99999999774  335577888999988 68888876542         11222222 11   


Q ss_pred             hcCCeEEEeccCC-cccccccCCCce
Q 025564          116 ALGRSCIHMTWSD-RGAISLEGLGLK  140 (251)
Q Consensus       116 ~~g~~~~~~g~~~-~~~~~l~~~g~~  140 (251)
                        ...++++|.+. .+...++..|+.
T Consensus       176 --~~~~i~vGD~~~~Di~~a~~aG~~  199 (238)
T 3ed5_A          176 --AEHTLIIGDSLTADIKGGQLAGLD  199 (238)
T ss_dssp             --GGGEEEEESCTTTTHHHHHHTTCE
T ss_pred             --hhHeEEECCCcHHHHHHHHHCCCE
Confidence              13577777653 334445556653

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=98.56  E-value=1.5e-07  Score=77.20  Aligned_cols=53  Identities=25%  Similarity=0.339  Sum_probs=44.2

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|+.|++.|++++++||+..  ......++++|+... |+.++++...
T Consensus        91 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  143 (233)
T 3s6j_A           91 IALPGAVELLETLDKENLKWCIATSGGI--DTATINLKALKLDIN-KINIVTRDDV  143 (233)
T ss_dssp             EECTTHHHHHHHHHHTTCCEEEECSSCH--HHHHHHHHTTTCCTT-SSCEECGGGS
T ss_pred             ccCCCHHHHHHHHHHCCCeEEEEeCCch--hhHHHHHHhcchhhh-hheeeccccC
Confidence            4578999999999999999999999864  335677889999988 6888888654

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=98.56  E-value=6.8e-08  Score=85.53  Aligned_cols=49  Identities=20%  Similarity=0.293  Sum_probs=39.4

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceee
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iit   97 (251)
                      .++||+.++|++|+++|++++++||+.+  ......++++|+... |+.++.
T Consensus       179 ~l~pg~~e~L~~Lk~~G~~v~IvSn~~~--~~~~~~l~~lgl~~~-f~~~l~  227 (317)
T 4eze_A          179 TLSPGLLTILPVIKAKGFKTAIISGGLD--IFTQRLKARYQLDYA-FSNTVE  227 (317)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHHTCSEE-EEECEE
T ss_pred             EECcCHHHHHHHHHhCCCEEEEEeCccH--HHHHHHHHHcCCCeE-EEEEEE
Confidence            4689999999999999999999999764  235567788999876 565543

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=1.1e-07  Score=77.59  Aligned_cols=85  Identities=25%  Similarity=0.228  Sum_probs=55.2

Q ss_pred             cCccHHHHHHHHHHCC-CeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH----HHhccCchhhhhcCCeE
Q 025564           47 PYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ----YLLRRDDAWFAALGRSC  121 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G-~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~----~L~~~~~~~~~~~g~~~  121 (251)
                      ++||+.++|+.|+++| ++++++||+.+  ......++.+|+... |+.+++++.....    .+++.+.+     -..+
T Consensus       106 ~~~~~~~~l~~l~~~g~~~~~i~t~~~~--~~~~~~l~~~~~~~~-f~~~~~~~kpk~~~~~~~~~~lgi~-----~~~~  177 (234)
T 3ddh_A          106 LLPGVKETLKTLKETGKYKLVVATKGDL--LDQENKLERSGLSPY-FDHIEVMSDKTEKEYLRLLSILQIA-----PSEL  177 (234)
T ss_dssp             BCTTHHHHHHHHHHHCCCEEEEEEESCH--HHHHHHHHHHTCGGG-CSEEEEESCCSHHHHHHHHHHHTCC-----GGGE
T ss_pred             cCccHHHHHHHHHhCCCeEEEEEeCCch--HHHHHHHHHhCcHhh-hheeeecCCCCHHHHHHHHHHhCCC-----cceE
Confidence            4788999999999999 99999998763  234567888999887 6888875433222    22332221     1357


Q ss_pred             EEeccCC-cccccccCCCc
Q 025564          122 IHMTWSD-RGAISLEGLGL  139 (251)
Q Consensus       122 ~~~g~~~-~~~~~l~~~g~  139 (251)
                      +++|.+. .....++..|+
T Consensus       178 i~iGD~~~~Di~~a~~aG~  196 (234)
T 3ddh_A          178 LMVGNSFKSDIQPVLSLGG  196 (234)
T ss_dssp             EEEESCCCCCCHHHHHHTC
T ss_pred             EEECCCcHHHhHHHHHCCC
Confidence            7777652 33334444454

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=98.54  E-value=7.9e-08  Score=79.57  Aligned_cols=52  Identities=31%  Similarity=0.404  Sum_probs=42.6

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .++||+.++|+.|+++|++++++||+++.  .....++++|+... |+.++++.+
T Consensus        83 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~--~~~~~l~~~gl~~~-f~~i~~~~~  134 (222)
T 2nyv_A           83 KPYPEIPYTLEALKSKGFKLAVVSNKLEE--LSKKILDILNLSGY-FDLIVGGDT  134 (222)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHTTCGGG-CSEEECTTS
T ss_pred             ccCCCHHHHHHHHHHCCCeEEEEcCCCHH--HHHHHHHHcCCHHH-heEEEecCc
Confidence            35799999999999999999999997642  35567888999877 688888754

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=98.49  E-value=1.8e-07  Score=77.16  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=34.5

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      ++||+.++|+.|+++|++++++||+++.  .....|+++|+..
T Consensus        87 ~~~g~~~~l~~L~~~g~~~~i~T~~~~~--~~~~~l~~~gl~~  127 (225)
T 1nnl_A           87 LTPGIRELVSRLQERNVQVFLISGGFRS--IVEHVASKLNIPA  127 (225)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEEHH--HHHHHHHHTTCCG
T ss_pred             CCccHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHHHcCCCc
Confidence            5799999999999999999999998742  3556788899974

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=98.49  E-value=9e-08  Score=80.58  Aligned_cols=54  Identities=24%  Similarity=0.233  Sum_probs=43.7

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccc-eeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG-AITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~-Iits~~~~  102 (251)
                      .++||+.++|+.|+++|++++++||++.  ......++++|+... |+. ++++....
T Consensus       110 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~i~~~~~~~  164 (259)
T 4eek_A          110 TAIEGAAETLRALRAAGVPFAIGSNSER--GRLHLKLRVAGLTEL-AGEHIYDPSWVG  164 (259)
T ss_dssp             EECTTHHHHHHHHHHHTCCEEEECSSCH--HHHHHHHHHTTCHHH-HCSCEECGGGGT
T ss_pred             CcCccHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHhcChHhh-ccceEEeHhhcC
Confidence            3578999999999999999999999874  235577888999877 688 88776654

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=98.49  E-value=1.7e-07  Score=75.59  Aligned_cols=50  Identities=18%  Similarity=0.302  Sum_probs=40.4

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ++||+.++|+.|+++| +++++||+++.  .....++++|+... |+.++++..
T Consensus        87 ~~~~~~~~l~~l~~~g-~~~i~s~~~~~--~~~~~l~~~~~~~~-f~~~~~~~~  136 (200)
T 3cnh_A           87 PRPEVLALARDLGQRY-RMYSLNNEGRD--LNEYRIRTFGLGEF-LLAFFTSSA  136 (200)
T ss_dssp             BCHHHHHHHHHHTTTS-EEEEEECCCHH--HHHHHHHHHTGGGT-CSCEEEHHH
T ss_pred             cCccHHHHHHHHHHcC-CEEEEeCCcHH--HHHHHHHhCCHHHh-cceEEeecc
Confidence            5788999999999999 99999998742  34566788898877 688888764

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=98.48  E-value=4.3e-07  Score=72.42  Aligned_cols=50  Identities=18%  Similarity=0.367  Sum_probs=41.2

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ++||+.++|+.|+++|++++++||++.   .....++++|+... |+.++++.+
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~~---~~~~~l~~~~~~~~-f~~~~~~~~  132 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRND---QVLEILEKTSIAAY-FTEVVTSSS  132 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSCT---HHHHHHHHTTCGGG-EEEEECGGG
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCcH---HHHHHHHHcCCHhh-eeeeeeccc
Confidence            578999999999999999999998753   35567888999877 688887754

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=98.48  E-value=1.3e-07  Score=80.26  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=55.7

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHHhccCchhhhhcCCeEEEec
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMT  125 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L~~~~~~~~~~~g~~~~~~g  125 (251)
                      .++||+.++|+.|+++|++++++||+++.  .....++++|+... |+.+++++....  ++.....      -.+..+|
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~--~~~~~~~~~gl~~~-f~~~~~~~k~~~--~k~~~~~------~~~~~vG  212 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNRF--VAKWVAEELGLDDY-FAEVLPHEKAEK--VKEVQQK------YVTAMVG  212 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHHTCSEE-ECSCCGGGHHHH--HHHHHTT------SCEEEEE
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHHHcCChhH-hHhcCHHHHHHH--HHHHHhc------CCEEEEe
Confidence            46799999999999999999999998743  35567888999988 688887765433  2221110      1455566


Q ss_pred             cCCcccccccCCCc
Q 025564          126 WSDRGAISLEGLGL  139 (251)
Q Consensus       126 ~~~~~~~~l~~~g~  139 (251)
                      .+..+...++..|+
T Consensus       213 D~~nDi~~~~~Ag~  226 (280)
T 3skx_A          213 DGVNDAPALAQADV  226 (280)
T ss_dssp             CTTTTHHHHHHSSE
T ss_pred             CCchhHHHHHhCCc
Confidence            55443444455554

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=98.48  E-value=4.7e-07  Score=74.42  Aligned_cols=85  Identities=27%  Similarity=0.331  Sum_probs=56.3

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH---------HHHHhccCchhhhhc
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT---------HQYLLRRDDAWFAAL  117 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~---------~~~L~~~~~~~~~~~  117 (251)
                      ++||+.++|+.|+ .|++++++||+++  ......++.+|+... |+.++++....         ...+++.+.+     
T Consensus       108 ~~~~~~~~l~~l~-~g~~~~i~sn~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~-----  178 (240)
T 3qnm_A          108 LMPHAKEVLEYLA-PQYNLYILSNGFR--ELQSRKMRSAGVDRY-FKKIILSEDLGVLKPRPEIFHFALSATQSE-----  178 (240)
T ss_dssp             BSTTHHHHHHHHT-TTSEEEEEECSCH--HHHHHHHHHHTCGGG-CSEEEEGGGTTCCTTSHHHHHHHHHHTTCC-----
T ss_pred             cCccHHHHHHHHH-cCCeEEEEeCCch--HHHHHHHHHcChHhh-ceeEEEeccCCCCCCCHHHHHHHHHHcCCC-----
Confidence            5789999999999 9999999999764  235567888899887 68888876432         1122222221     


Q ss_pred             CCeEEEeccC-CcccccccCCCce
Q 025564          118 GRSCIHMTWS-DRGAISLEGLGLK  140 (251)
Q Consensus       118 g~~~~~~g~~-~~~~~~l~~~g~~  140 (251)
                      -..++.+|.+ ......++..|+.
T Consensus       179 ~~~~~~iGD~~~~Di~~a~~aG~~  202 (240)
T 3qnm_A          179 LRESLMIGDSWEADITGAHGVGMH  202 (240)
T ss_dssp             GGGEEEEESCTTTTHHHHHHTTCE
T ss_pred             cccEEEECCCchHhHHHHHHcCCe
Confidence            1356777765 2444455556653

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=98.46  E-value=1.7e-07  Score=80.74  Aligned_cols=68  Identities=25%  Similarity=0.357  Sum_probs=55.4

Q ss_pred             ccEEEEeccccccCC---------------------------CccCccHHHHHHHHHHCCCeEEEEeCCCC--CchhHHH
Q 025564           30 FKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSR--RASTTID   80 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g---------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~--~~~~~~~   80 (251)
                      -++++||+||||.++                           ..++||+.++|+.|+++|++++|+||++.  .++....
T Consensus        58 ~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~  137 (260)
T 3pct_A           58 KKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVD  137 (260)
T ss_dssp             CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHH
T ss_pred             CCEEEEECCccCcCChhHHHhhcccCCCCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence            359999999999875                           24689999999999999999999999874  4456778


Q ss_pred             HhHhCCCCCcccc-ceeec
Q 025564           81 KLKSLGFDPSLFA-GAITS   98 (251)
Q Consensus        81 ~L~~~Gl~~~~~~-~Iits   98 (251)
                      .|+++|++.. ++ .++..
T Consensus       138 ~L~~lGi~~~-~~~~Lilr  155 (260)
T 3pct_A          138 DMKRLGFTGV-NDKTLLLK  155 (260)
T ss_dssp             HHHHHTCCCC-STTTEEEE
T ss_pred             HHHHcCcCcc-ccceeEec
Confidence            8999999875 22 56544

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=98.45  E-value=2.6e-07  Score=77.77  Aligned_cols=50  Identities=28%  Similarity=0.392  Sum_probs=40.7

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ++||+.++|+.|+  |++++++||+++.  .....++++|+... |+.++++++.
T Consensus        94 ~~~~~~~~l~~l~--g~~~~i~t~~~~~--~~~~~l~~~gl~~~-f~~~~~~~~~  143 (253)
T 1qq5_A           94 PYPDAAQCLAELA--PLKRAILSNGAPD--MLQALVANAGLTDS-FDAVISVDAK  143 (253)
T ss_dssp             BCTTHHHHHHHHT--TSEEEEEESSCHH--HHHHHHHHTTCGGG-CSEEEEGGGG
T ss_pred             CCccHHHHHHHHc--CCCEEEEeCcCHH--HHHHHHHHCCchhh-ccEEEEcccc
Confidence            4689999999999  9999999998742  35567888999887 6888887764

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=98.45  E-value=1.8e-07  Score=78.99  Aligned_cols=53  Identities=13%  Similarity=0.046  Sum_probs=39.2

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .++||+.++|+.|++.|++++++||+++.  .....++.+|+....|+.++++..
T Consensus       111 ~~~~~~~~~l~~l~~~g~~~~i~tn~~~~--~~~~~l~~~~~~~~~~~~~~~~~~  163 (277)
T 3iru_A          111 QLIPGWKEVFDKLIAQGIKVGGNTGYGPG--MMAPALIAAKEQGYTPASTVFATD  163 (277)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHHHHTTCCCSEEECGGG
T ss_pred             ccCcCHHHHHHHHHHcCCeEEEEeCCchH--HHHHHHHhcCcccCCCceEecHHh
Confidence            34789999999999999999999998742  244566667765542366777665

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=98.45  E-value=2.5e-07  Score=76.35  Aligned_cols=53  Identities=25%  Similarity=0.304  Sum_probs=40.5

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++|++|+++|++++++||+++   .+...|+++|+... |+.++++.++.
T Consensus        95 ~~~~~~~~~l~~l~~~g~~~~i~Tn~~~---~~~~~l~~~gl~~~-f~~~~~~~~~~  147 (220)
T 2zg6_A           95 FLYDDTLEFLEGLKSNGYKLALVSNASP---RVKTLLEKFDLKKY-FDALALSYEIK  147 (220)
T ss_dssp             EECTTHHHHHHHHHTTTCEEEECCSCHH---HHHHHHHHHTCGGG-CSEEC------
T ss_pred             eECcCHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHhcCcHhH-eeEEEeccccC
Confidence            4679999999999999999999999853   25678889999988 78999887653

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=98.45  E-value=2.4e-07  Score=77.48  Aligned_cols=50  Identities=18%  Similarity=0.163  Sum_probs=39.1

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh-CCCCCccccceeech
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSG   99 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~-~Gl~~~~~~~Iits~   99 (251)
                      ++||+.++|+.|+++|++++++||+++.  .+...+.+ +|+... |+.++++.
T Consensus       113 ~~~~~~~~l~~l~~~g~~~~i~sn~~~~--~~~~~l~~~~~l~~~-f~~~~~~~  163 (250)
T 3l5k_A          113 LMPGAEKLIIHLRKHGIPFALATSSRSA--SFDMKTSRHKEFFSL-FSHIVLGD  163 (250)
T ss_dssp             BCTTHHHHHHHHHHTTCCEEEECSCCHH--HHHHHTTTCHHHHTT-SSCEECTT
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEeCCCHH--HHHHHHHhccCHHhh-eeeEEecc
Confidence            6789999999999999999999998742  24455644 477766 68888776

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=98.43  E-value=8.6e-08  Score=88.13  Aligned_cols=56  Identities=20%  Similarity=0.176  Sum_probs=38.9

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhC--CCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL--GFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~--Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++|+.|+++|++++++||+..........+...  |+..+ |+.++++.++.
T Consensus       100 ~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~~~-fd~i~~~~~~~  157 (555)
T 3i28_A          100 KINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMH-FDFLIESCQVG  157 (555)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTT-SSEEEEHHHHT
T ss_pred             CcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhhhh-eeEEEeccccC
Confidence            4679999999999999999999999832111111223332  66666 78899887643

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=98.43  E-value=4e-09  Score=90.55  Aligned_cols=72  Identities=6%  Similarity=-0.105  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      |+.+..+++.+.++|.++ |+||.+.......-..++.+.+...++.. +. ... +||+|.+|+.+++++|++|-
T Consensus       132 ~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~~~~l~~~fd~i~~~-~~~-~KP~p~~~~~~~~~lg~~p~  205 (261)
T 1yns_A          132 FADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDT-KIG-HKVESESYRKIADSIGCSTN  205 (261)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBCCGGGCSEEECG-GGC-CTTCHHHHHHHHHHHTSCGG
T ss_pred             CcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhhcccChHhhccEEEec-CCC-CCCCHHHHHHHHHHhCcCcc
Confidence            456678888777789987 58888764322100012223344444442 34 334 99999999999999998763

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=98.43  E-value=3.8e-07  Score=78.01  Aligned_cols=51  Identities=24%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             cCccHHHHHHHHHHCCC--eEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATTGA--KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~--~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ++||+.++|+.|++.|+  +++++||+++.  .....++.+|+... |+.+++++.
T Consensus       143 ~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~--~~~~~l~~~gl~~~-fd~v~~~~~  195 (282)
T 3nuq_A          143 PDIPLRNMLLRLRQSGKIDKLWLFTNAYKN--HAIRCLRLLGIADL-FDGLTYCDY  195 (282)
T ss_dssp             CCHHHHHHHHHHHHSSSCSEEEEECSSCHH--HHHHHHHHHTCTTS-CSEEECCCC
T ss_pred             cChhHHHHHHHHHhCCCCceEEEEECCChH--HHHHHHHhCCcccc-cceEEEecc
Confidence            58999999999999999  99999998742  35567788999888 688887764

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=98.43  E-value=1.4e-07  Score=81.37  Aligned_cols=70  Identities=24%  Similarity=0.323  Sum_probs=56.3

Q ss_pred             CccEEEEeccccccCCC---------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCC--CchhHH
Q 025564           29 RFKAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNSSR--RASTTI   79 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~---------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~--~~~~~~   79 (251)
                      ..++++||+||||.++.                           .++||+.++|+.|+++|++++|+||++.  .++...
T Consensus        57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~  136 (262)
T 3ocu_A           57 KKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTI  136 (262)
T ss_dssp             CEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHHH
T ss_pred             CCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccchHHHHH
Confidence            45799999999999753                           3689999999999999999999999874  345667


Q ss_pred             HHhHhCCCCCccccceeec
Q 025564           80 DKLKSLGFDPSLFAGAITS   98 (251)
Q Consensus        80 ~~L~~~Gl~~~~~~~Iits   98 (251)
                      ..|+++|++...-+.++..
T Consensus       137 ~~L~~lGi~~~~~~~Lilr  155 (262)
T 3ocu_A          137 DDMKRLGFNGVEESAFYLK  155 (262)
T ss_dssp             HHHHHHTCSCCSGGGEEEE
T ss_pred             HHHHHcCcCcccccceecc
Confidence            8899999986411266654

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=98.40  E-value=2.6e-07  Score=76.94  Aligned_cols=45  Identities=16%  Similarity=0.050  Sum_probs=39.5

Q ss_pred             CccEEEEeccccccCCC-----------------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           29 RFKAWLLDQFGVLHDGK-----------------------------------KPYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~-----------------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      .+++++||+||||++..                                   .+.||+.++|++|+++|++++++||+++
T Consensus        36 ~~kaviFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~L~~~G~~l~ivTn~~~  115 (211)
T 2b82_A           36 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSP  115 (211)
T ss_dssp             CCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCC
T ss_pred             CCCEEEEcCCCCCCcCcHHHHHHHHHhhHHHHHHhhhHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence            58999999999999842                                   2456999999999999999999999975

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=98.39  E-value=2.3e-07  Score=75.16  Aligned_cols=51  Identities=22%  Similarity=0.317  Sum_probs=41.0

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.+ |+.|+++ ++++++||+++  ......|+++|+... |+.++++.+.
T Consensus        74 ~~~~~~~~-l~~l~~~-~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  124 (201)
T 2w43_A           74 KAYEDTKY-LKEISEI-AEVYALSNGSI--NEVKQHLERNGLLRY-FKGIFSAESV  124 (201)
T ss_dssp             EECGGGGG-HHHHHHH-SEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEEGGGG
T ss_pred             ccCCChHH-HHHHHhC-CeEEEEeCcCH--HHHHHHHHHCCcHHh-CcEEEehhhc
Confidence            34688999 9999999 99999999874  235567888999887 6888887643

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=98.38  E-value=4.5e-07  Score=76.11  Aligned_cols=50  Identities=26%  Similarity=0.446  Sum_probs=40.7

Q ss_pred             CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      +||+.++|+.|+++|++++++||+++.  .....++++|+... |+.++++.+
T Consensus       116 ~~~~~~~l~~l~~~g~~~~i~t~~~~~--~~~~~l~~~gl~~~-f~~~~~~~~  165 (243)
T 2hsz_A          116 YPNVKETLEALKAQGYILAVVTNKPTK--HVQPILTAFGIDHL-FSEMLGGQS  165 (243)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHTTCGGG-CSEEECTTT
T ss_pred             CCCHHHHHHHHHHCCCEEEEEECCcHH--HHHHHHHHcCchhe-EEEEEeccc
Confidence            488999999999999999999998742  35567888999877 688877654

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=98.38  E-value=1.9e-07  Score=77.30  Aligned_cols=53  Identities=13%  Similarity=0.073  Sum_probs=41.1

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCc-hhHHHHh---HhCCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKL---KSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~-~~~~~~L---~~~Gl~~~~~~~Iits~~~  101 (251)
                      ++||+.++|+.|++. ++++++||+++.. +.+.+.|   +.+|+... |+.++++.++
T Consensus       113 ~~~~~~~~l~~l~~~-~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~-fd~i~~~~~~  169 (229)
T 4dcc_A          113 IPTYKLDLLLKLREK-YVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDY-FEKTYLSYEM  169 (229)
T ss_dssp             CCHHHHHHHHHHTTT-SEEEEEECCCHHHHHHHHHHTSCBTTBCHHHH-CSEEEEHHHH
T ss_pred             ccHHHHHHHHHHHhc-CcEEEEECCChHHHHHHHhhhhhhccCCHHHh-CCEEEeeccc
Confidence            468999999999998 9999999988532 2233566   78898877 6888887653

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=98.37  E-value=6.4e-07  Score=73.49  Aligned_cols=45  Identities=33%  Similarity=0.488  Sum_probs=38.1

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ++||+.++|+.|++. ++++++||++..       ++.+|+... |+.++++..
T Consensus       106 ~~~~~~~~l~~l~~~-~~~~i~t~~~~~-------l~~~~l~~~-f~~~~~~~~  150 (230)
T 3vay_A          106 IFPEVQPTLEILAKT-FTLGVITNGNAD-------VRRLGLADY-FAFALCAED  150 (230)
T ss_dssp             BCTTHHHHHHHHHTT-SEEEEEESSCCC-------GGGSTTGGG-CSEEEEHHH
T ss_pred             cCcCHHHHHHHHHhC-CeEEEEECCchh-------hhhcCcHHH-eeeeEEccc
Confidence            678999999999998 999999998743       677899887 688888764

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=98.36  E-value=8.4e-07  Score=72.82  Aligned_cols=85  Identities=20%  Similarity=0.276  Sum_probs=57.0

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH---------HHHHhccCchhhhhc
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT---------HQYLLRRDDAWFAAL  117 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~---------~~~L~~~~~~~~~~~  117 (251)
                      ++||+.++|+.|++. ++++++||+++.  .....++.+|+... |+.++++....         ...+++.+.+     
T Consensus       101 ~~~~~~~~l~~l~~~-~~~~i~t~~~~~--~~~~~l~~~~~~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~-----  171 (234)
T 3u26_A          101 LYPEVVEVLKSLKGK-YHVGMITDSDTE--QAMAFLDALGIKDL-FDSITTSEEAGFFKPHPRIFELALKKAGVK-----  171 (234)
T ss_dssp             BCTTHHHHHHHHTTT-SEEEEEESSCHH--HHHHHHHHTTCGGG-CSEEEEHHHHTBCTTSHHHHHHHHHHHTCC-----
T ss_pred             cCcCHHHHHHHHHhC-CcEEEEECCCHH--HHHHHHHHcCcHHH-cceeEeccccCCCCcCHHHHHHHHHHcCCC-----
Confidence            578899999999999 999999998742  35577888999887 68888876432         1122222211     


Q ss_pred             CCeEEEeccCC-cccccccCCCce
Q 025564          118 GRSCIHMTWSD-RGAISLEGLGLK  140 (251)
Q Consensus       118 g~~~~~~g~~~-~~~~~l~~~g~~  140 (251)
                      -..++.+|.+. .+...++..|+.
T Consensus       172 ~~~~~~vGD~~~~Di~~a~~aG~~  195 (234)
T 3u26_A          172 GEEAVYVGDNPVKDCGGSKNLGMT  195 (234)
T ss_dssp             GGGEEEEESCTTTTHHHHHTTTCE
T ss_pred             chhEEEEcCCcHHHHHHHHHcCCE
Confidence            14577778653 334456667753

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=98.34  E-value=8.6e-07  Score=72.00  Aligned_cols=50  Identities=20%  Similarity=0.335  Sum_probs=38.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc-cceeech
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF-AGAITSG   99 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~-~~Iits~   99 (251)
                      .++||+.++|+.|+++ ++++++||+++  ......++++|+... | +.++++.
T Consensus        69 ~~~~g~~~~l~~l~~~-~~~~i~s~~~~--~~~~~~l~~~gl~~~-f~~~~~~~~  119 (206)
T 1rku_A           69 KPLEGAVEFVDWLRER-FQVVILSDTFY--EFSQPLMRQLGFPTL-LCHKLEIDD  119 (206)
T ss_dssp             CCCTTHHHHHHHHHTT-SEEEEEEEEEH--HHHHHHHHHTTCCCE-EEEEEEECT
T ss_pred             CCCccHHHHHHHHHhc-CcEEEEECChH--HHHHHHHHHcCCcce-ecceeEEcC
Confidence            3579999999999999 99999999763  235567888999876 5 3555543

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=98.33  E-value=1.6e-07  Score=76.45  Aligned_cols=48  Identities=8%  Similarity=0.185  Sum_probs=36.6

Q ss_pred             ccCccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeech
Q 025564           46 KPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~   99 (251)
                      .++||+.++|+.|+++ |++++++||+++..  ....|+++|+    |+.++++.
T Consensus        73 ~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~--~~~~l~~~gl----f~~i~~~~  121 (193)
T 2i7d_A           73 EPIPGALDAVREMNDLPDTQVFICTSPLLKY--HHCVGEKYRW----VEQHLGPQ  121 (193)
T ss_dssp             CBCTTHHHHHHHHHTSTTEEEEEEECCCSSC--TTTHHHHHHH----HHHHHCHH
T ss_pred             ccCcCHHHHHHHHHhCCCCeEEEEeCCChhh--HHHHHHHhCc----hhhhcCHH
Confidence            4689999999999999 99999999998543  2245666676    36666653

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=98.33  E-value=1.2e-06  Score=70.17  Aligned_cols=53  Identities=9%  Similarity=0.042  Sum_probs=35.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCC-C--chhHHHHhHh-CCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSR-R--ASTTIDKLKS-LGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~--~~~~~~~L~~-~Gl~~~~~~~Iits~~  100 (251)
                      .++||+.++|++|++. ++++++||+++ .  .......|.+ +|.... ++.++++.+
T Consensus        69 ~~~pg~~e~L~~L~~~-~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~~~-~~~i~~~~~  125 (180)
T 3bwv_A           69 DVMPHAQEVVKQLNEH-YDIYIATAAMDVPTSFHDKYEWLLEYFPFLDP-QHFVFCGRK  125 (180)
T ss_dssp             CBCTTHHHHHHHHTTT-SEEEEEECC--CCSHHHHHHHHHHHHCTTSCG-GGEEECSCG
T ss_pred             CCCcCHHHHHHHHHhc-CCEEEEeCCCCcchHHHHHHHHHHHHcCCCCc-ccEEEeCCc
Confidence            5689999999999985 99999999842 1  1222344555 566555 466666665

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=98.30  E-value=1e-06  Score=75.80  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=48.5

Q ss_pred             cCccEEEEeccccccCC-CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDG-KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g-~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |+++.|++|+||||.+. ....+...++|++|+++|++++++|+.+.  ..+...++.+|++
T Consensus         7 m~~~li~~DlDGTLl~~~~~~~~~~~~~l~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~   66 (275)
T 1xvi_A            7 QQPLLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTS--AEMLYLQKTLGLQ   66 (275)
T ss_dssp             CCCEEEEEECTTTTSCSSCCSCCTTHHHHHHHHHTTCCEEEECSSCH--HHHHHHHHHTTCT
T ss_pred             cCceEEEEeCCCCCCCCCCcCCHHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcCCC
Confidence            57899999999999985 45668899999999999999999998663  3355666777775

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=98.30  E-value=5.2e-07  Score=73.24  Aligned_cols=50  Identities=12%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh------CCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS------LGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~------~Gl~~~~~~~Iits~~  100 (251)
                      ++||+.++|+.|++ |++++++||+++.  .....+++      +|+... |+.++++..
T Consensus        90 ~~~~~~~~l~~l~~-g~~~~i~t~~~~~--~~~~~~~~l~~~~~~~l~~~-f~~~~~~~~  145 (211)
T 2i6x_A           90 ISAEKFDYIDSLRP-DYRLFLLSNTNPY--VLDLAMSPRFLPSGRTLDSF-FDKVYASCQ  145 (211)
T ss_dssp             ECHHHHHHHHHHTT-TSEEEEEECCCHH--HHHHHTSTTSSTTCCCGGGG-SSEEEEHHH
T ss_pred             cChHHHHHHHHHHc-CCeEEEEeCCCHH--HHHHHHhhhccccccCHHHH-cCeEEeecc
Confidence            46889999999998 9999999998642  24456666      788877 688888764

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=98.29  E-value=7.3e-07  Score=75.96  Aligned_cols=51  Identities=18%  Similarity=0.322  Sum_probs=41.4

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ++||+.++|+.|++ +++++++||+++.  .....|+++|+... |+.+++++++
T Consensus       122 ~~~g~~~~L~~L~~-~~~l~i~Tn~~~~--~~~~~l~~~gl~~~-f~~i~~~~~~  172 (260)
T 2gfh_A          122 LADDVKAMLTELRK-EVRLLLLTNGDRQ--TQREKIEACACQSY-FDAIVIGGEQ  172 (260)
T ss_dssp             CCHHHHHHHHHHHT-TSEEEEEECSCHH--HHHHHHHHHTCGGG-CSEEEEGGGS
T ss_pred             CCcCHHHHHHHHHc-CCcEEEEECcChH--HHHHHHHhcCHHhh-hheEEecCCC
Confidence            46888899999987 5999999998743  24567888999988 7888888764

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.27  E-value=1.2e-06  Score=71.16  Aligned_cols=50  Identities=24%  Similarity=0.321  Sum_probs=40.0

Q ss_pred             CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .||+.++++.|++.|++++++||+++  ......++++|+... |+.++++..
T Consensus        91 ~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~  140 (225)
T 3d6j_A           91 FPDTLPTLTHLKKQGIRIGIISTKYR--FRILSFLRNHMPDDW-FDIIIGGED  140 (225)
T ss_dssp             CTTHHHHHHHHHHHTCEEEEECSSCH--HHHHHHHHTSSCTTC-CSEEECGGG
T ss_pred             CcCHHHHHHHHHHCCCeEEEEECCCH--HHHHHHHHHcCchhh-eeeeeehhh
Confidence            68899999999999999999999863  235567788999877 677777654

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=98.27  E-value=1.2e-06  Score=73.24  Aligned_cols=58  Identities=12%  Similarity=0.163  Sum_probs=46.3

Q ss_pred             CccEEEEeccccccCCCcc-CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           29 RFKAWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~-~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      .++.++||+||||++.... .+...++|++|+++|++++++|+.+.  ......++.+|++
T Consensus         2 m~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v~i~TGR~~--~~~~~~~~~l~~~   60 (231)
T 1wr8_A            2 KIKAISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTV--QFAEAASILIGTS   60 (231)
T ss_dssp             CCCEEEEESTTTTBCTTSCBCHHHHHHHHHHHHTTCCEEEECSSCH--HHHHHHHHHHTCC
T ss_pred             ceeEEEEECCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCh--hHHHHHHHHcCCC
Confidence            3789999999999987764 48889999999999999999998763  2344445566765

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=98.26  E-value=1.6e-06  Score=74.01  Aligned_cols=60  Identities=18%  Similarity=0.224  Sum_probs=40.2

Q ss_pred             cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      |.+++|+||+||||++... +.+...++|++|+++|++++++|+.+  ...+...++.+|+..
T Consensus         3 m~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~~   63 (279)
T 3mpo_A            3 LTIKLIAIDIDGTLLNEKNELAQATIDAVQAAKAQGIKVVLCTGRP--LTGVQPYLDAMDIDG   63 (279)
T ss_dssp             --CCEEEECC-----------CHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHHHTTCCS
T ss_pred             cceEEEEEcCcCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHcCCCC
Confidence            4689999999999998775 45789999999999999999999755  334556777888864

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=98.25  E-value=2e-06  Score=73.38  Aligned_cols=59  Identities=22%  Similarity=0.278  Sum_probs=48.1

Q ss_pred             cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |++++++||+||||++... +-+...++|++|+++|++++++|+.+  ...+...++.+|+.
T Consensus         3 M~~kli~fDlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~   62 (279)
T 4dw8_A            3 LKYKLIVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRP--TYGIVPLANELRMN   62 (279)
T ss_dssp             -CCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHHHTTGG
T ss_pred             CcceEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCC--hHHHHHHHHHhCCC
Confidence            5799999999999998775 45788999999999999999999765  33355666777874

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=98.23  E-value=1.3e-06  Score=72.51  Aligned_cols=52  Identities=21%  Similarity=0.183  Sum_probs=43.0

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ++||+.++|+.|++.|++++++||+.+  ......++.+|+... |+.+++++..
T Consensus       111 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  162 (240)
T 3sd7_A          111 IYENMKEILEMLYKNGKILLVATSKPT--VFAETILRYFDIDRY-FKYIAGSNLD  162 (240)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHTTCGGG-CSEEEEECTT
T ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCcH--HHHHHHHHHcCcHhh-EEEEEecccc
Confidence            678999999999999999999999753  335577888999887 6888887643

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.21  E-value=1.7e-06  Score=78.86  Aligned_cols=43  Identities=30%  Similarity=0.274  Sum_probs=35.2

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .++||+.++|+.|+++|++++++||+.+.  .....++++|+...
T Consensus       256 ~~~pg~~e~l~~Lk~~G~~~~ivS~~~~~--~~~~~~~~lgl~~~  298 (415)
T 3p96_A          256 ELMPGARTTLRTLRRLGYACGVVSGGFRR--IIEPLAEELMLDYV  298 (415)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEEEEHH--HHHHHHHHTTCSEE
T ss_pred             ccCccHHHHHHHHHHCCCEEEEEcCCcHH--HHHHHHHHcCccce
Confidence            35799999999999999999999997642  34567788999754

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=98.21  E-value=1.7e-06  Score=74.51  Aligned_cols=61  Identities=20%  Similarity=0.165  Sum_probs=47.0

Q ss_pred             cccCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           26 ETRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        26 ~~~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      ..|.++.++||+||||.+... +-+...++|++|+++|++++++|+.+..  .+...++.+|++
T Consensus        17 ~~~~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v~iaTGR~~~--~~~~~~~~l~~~   78 (285)
T 3pgv_A           17 FQGMYQVVASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRHYI--DVGQIRDNLGIR   78 (285)
T ss_dssp             ----CCEEEEECCCCCSCTTSCCCHHHHHHHHHHHTTTCEEEEECSSCGG--GGHHHHHHHCSC
T ss_pred             ccCcceEEEEeCcCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHH--HHHHHHHhcCCC
Confidence            345899999999999999765 4568899999999999999999986632  344556667776

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=98.20  E-value=1.8e-06  Score=73.02  Aligned_cols=59  Identities=22%  Similarity=0.213  Sum_probs=45.0

Q ss_pred             cCccEEEEeccccccCCCcc-CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~-~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |++++++||+||||.+.... -+...++|++|+++|++++++|..+..  .+...++.+|++
T Consensus         1 M~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~~aTGR~~~--~~~~~~~~l~~~   60 (258)
T 2pq0_A            1 MGRKIVFFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVAIATGRAPF--MFEHVRKQLGID   60 (258)
T ss_dssp             -CCCEEEECTBTTTBCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCGG--GSHHHHHHHTCC
T ss_pred             CCceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCEEEEECCCChH--HHHHHHHhcCCC
Confidence            46899999999999987654 467899999999999999999986632  233444555553

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=98.20  E-value=3.4e-06  Score=72.68  Aligned_cols=59  Identities=17%  Similarity=0.202  Sum_probs=47.8

Q ss_pred             CccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      .++.++||+||||.+... +-+...++|++|+++|++++++|+.+.  ..+...++.+|++.
T Consensus         4 m~kli~~DlDGTLl~~~~~i~~~~~~aL~~l~~~Gi~vviaTGR~~--~~~~~~~~~l~l~~   63 (282)
T 1rkq_A            4 AIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPY--AGVHNYLKELHMEQ   63 (282)
T ss_dssp             CCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCG--GGTHHHHHHTTCCS
T ss_pred             cceEEEEeCCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHhCCCC
Confidence            379999999999998765 457899999999999999999998763  23445667777754

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=98.19  E-value=2.3e-06  Score=73.41  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=47.0

Q ss_pred             cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |.++.++||+||||.+... +.+...++|++|+++|++++++|+.+  ...+...++.+|++
T Consensus         4 M~~kli~fDlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~~~~~   63 (290)
T 3dnp_A            4 MSKQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRH--FRSAQKIAKSLKLD   63 (290)
T ss_dssp             --CCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEBCSSC--HHHHHHHHHHTTCC
T ss_pred             CcceEEEEcCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHcCCC
Confidence            6789999999999999775 45788999999999999999999755  33345566677776

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=98.18  E-value=4.2e-06  Score=67.82  Aligned_cols=51  Identities=16%  Similarity=0.191  Sum_probs=40.3

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ++|++.++|+.|++.|++++++||+++.  .....++.+|+... |+.++++..
T Consensus        95 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~--~~~~~l~~~~~~~~-~~~~~~~~~  145 (226)
T 1te2_A           95 LLPGVREAVALCKEQGLLVGLASASPLH--MLEKVLTMFDLRDS-FDALASAEK  145 (226)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHTTCGGG-CSEEEECTT
T ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCcHH--HHHHHHHhcCcHhh-CcEEEeccc
Confidence            4678888999999999999999997632  34567788899877 688877654

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=98.17  E-value=2e-06  Score=72.10  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=48.0

Q ss_pred             cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      |.++.+++|+||||.+... +-|.+.++|++|+++|++++++|+.+.  ..+...++.+|++.
T Consensus         3 mm~kli~~DlDGTLl~~~~~i~~~~~~~l~~l~~~g~~~~i~TGr~~--~~~~~~~~~l~~~~   63 (227)
T 1l6r_A            3 HMIRLAAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVI--PVVYALKIFLGING   63 (227)
T ss_dssp             CCCCEEEEEHHHHSBCTTSCBCHHHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHHTCCS
T ss_pred             cceEEEEEECCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCc--HHHHHHHHHhCCCC
Confidence            3479999999999998665 457899999999999999999998763  33445566677753

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=98.16  E-value=1.4e-06  Score=72.17  Aligned_cols=48  Identities=21%  Similarity=0.318  Sum_probs=36.6

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ++||+.++|+.|++. ++++++||+++.  .....++.+|+.   |+.++++..
T Consensus       117 ~~~~~~~~l~~l~~~-~~~~i~t~~~~~--~~~~~l~~~~~~---f~~~~~~~~  164 (254)
T 3umg_A          117 PWPDSVPGLTAIKAE-YIIGPLSNGNTS--LLLDMAKNAGIP---WDVIIGSDI  164 (254)
T ss_dssp             BCTTHHHHHHHHHHH-SEEEECSSSCHH--HHHHHHHHHTCC---CSCCCCHHH
T ss_pred             CCcCHHHHHHHHHhC-CeEEEEeCCCHH--HHHHHHHhCCCC---eeEEEEcCc
Confidence            478999999999997 999999998742  345667778885   466776654

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=98.14  E-value=1.9e-06  Score=70.21  Aligned_cols=43  Identities=12%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             CccCccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           45 KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      ..++||+.++|+.|+++ |++++++||+++..  ....|+++|+..
T Consensus        74 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~--~~~~l~~~~l~~  117 (197)
T 1q92_A           74 LEPLPGAVEAVKEMASLQNTDVFICTSPIKMF--KYCPYEKYAWVE  117 (197)
T ss_dssp             CCBCTTHHHHHHHHHHSTTEEEEEEECCCSCC--SSHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHhcCCCeEEEEeCCccch--HHHHHHHhchHH
Confidence            35789999999999999 99999999998643  224455566654

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=98.14  E-value=2e-06  Score=72.85  Aligned_cols=56  Identities=20%  Similarity=0.127  Sum_probs=45.5

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      ++.|+||+||||. ....++...++|++|+++|++++++|+.+.  ..+...++.+|++
T Consensus         2 ikli~~DlDGTLl-~~~~~~~~~~~l~~l~~~g~~~~i~Tgr~~--~~~~~~~~~~~~~   57 (249)
T 2zos_A            2 IRLIFLDIDKTLI-PGYEPDPAKPIIEELKDMGFEIIFNSSKTR--AEQEYYRKELEVE   57 (249)
T ss_dssp             EEEEEECCSTTTC-TTSCSGGGHHHHHHHHHTTEEEEEBCSSCH--HHHHHHHHHHTCC
T ss_pred             ccEEEEeCCCCcc-CCCCcHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCC
Confidence            5899999999999 666667799999999999999999998763  2344556666764

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=98.13  E-value=2.8e-06  Score=69.58  Aligned_cols=49  Identities=22%  Similarity=0.360  Sum_probs=36.9

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ++||+.++|+.|++ |++++++||+++.  .....++.  +... |+.++++.++
T Consensus       100 ~~~~~~~~l~~l~~-~~~~~i~tn~~~~--~~~~~l~~--l~~~-fd~i~~~~~~  148 (240)
T 3smv_A          100 AFPDTVEALQYLKK-HYKLVILSNIDRN--EFKLSNAK--LGVE-FDHIITAQDV  148 (240)
T ss_dssp             BCTTHHHHHHHHHH-HSEEEEEESSCHH--HHHHHHTT--TCSC-CSEEEEHHHH
T ss_pred             CCCcHHHHHHHHHh-CCeEEEEeCCChh--HHHHHHHh--cCCc-cCEEEEcccc
Confidence            57899999999999 8999999998742  24455555  4455 6888887753

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=98.11  E-value=3.4e-06  Score=72.59  Aligned_cols=63  Identities=19%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             HhcccCccEEEEeccccccCCCc--cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           24 IAETRRFKAWLLDQFGVLHDGKK--PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        24 ~~~~~~~~~~l~D~DGvL~~g~~--~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      +...+.++.++||+||||.+...  +-+...++|++|+++|++++++|+.+  ...+...++.+|..
T Consensus        15 ~~~~~~~kli~~DlDGTLl~~~~~~i~~~~~~al~~l~~~G~~v~iaTGR~--~~~~~~~~~~l~~~   79 (283)
T 3dao_A           15 LYFQGMIKLIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQ--FSSEFKLFAPIKHK   79 (283)
T ss_dssp             ----CCCCEEEECCBTTTBSTTCSCCCHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHTGGGGGG
T ss_pred             hhhccCceEEEEeCcCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHcCCC
Confidence            34445899999999999998765  56899999999999999999999765  33344556666653

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=98.10  E-value=2.3e-06  Score=73.19  Aligned_cols=58  Identities=22%  Similarity=0.216  Sum_probs=43.8

Q ss_pred             cCccEEEEeccccccCCCccCc-c-HHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYP-G-AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~p-G-a~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      |.++.++||+||||.+....++ . ..++|++|+++|++++++|+.+.  ..+...++.+++
T Consensus         1 m~~kli~~DlDGTLl~~~~~i~~~~~~~al~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~   60 (271)
T 1rlm_A            1 MAVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQY--YQLISFFPELKD   60 (271)
T ss_dssp             -CCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHHHTCEEEEECSSCH--HHHGGGCTTTTT
T ss_pred             CCccEEEEeCCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeCCcH--HHHHHHHHhcCC
Confidence            4689999999999999877665 4 38999999999999999998663  223333444443

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=98.10  E-value=3.2e-06  Score=72.20  Aligned_cols=50  Identities=20%  Similarity=0.207  Sum_probs=39.2

Q ss_pred             cCccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ++||+.++|+.|++. |++++++||+++.  .....|+.+|+..  |+.++++.+
T Consensus       115 ~~~g~~~~L~~l~~~~g~~l~i~T~~~~~--~~~~~l~~~~l~~--f~~i~~~~~  165 (275)
T 2qlt_A          115 EVPGAVKLCNALNALPKEKWAVATSGTRD--MAKKWFDILKIKR--PEYFITAND  165 (275)
T ss_dssp             ECTTHHHHHHHHHTSCGGGEEEECSSCHH--HHHHHHHHHTCCC--CSSEECGGG
T ss_pred             cCcCHHHHHHHHHhccCCeEEEEeCCCHH--HHHHHHHHcCCCc--cCEEEEccc
Confidence            468999999999999 9999999998742  3456777788863  577777665

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=98.09  E-value=2.3e-06  Score=70.54  Aligned_cols=69  Identities=13%  Similarity=-0.003  Sum_probs=55.5

Q ss_pred             CccEEEEeccccccCCC------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh
Q 025564           29 RFKAWLLDQFGVLHDGK------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~   84 (251)
                      +.+++++|+||||++..                        ...||+.++|++|++. ++++|+||+++..  ....++.
T Consensus        27 ~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~-~~i~I~Tss~~~~--a~~vl~~  103 (195)
T 2hhl_A           27 GKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQL-FECVLFTASLAKY--ADPVADL  103 (195)
T ss_dssp             TCCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH--HHHHHHH
T ss_pred             CCeEEEEccccceEcccccCCCCccceeeeecCCceeeEEEEeCcCHHHHHHHHHcC-CeEEEEcCCCHHH--HHHHHHH
Confidence            67899999999998642                        3479999999999998 9999999988533  3456777


Q ss_pred             CCCCCccccceeechhh
Q 025564           85 LGFDPSLFAGAITSGEL  101 (251)
Q Consensus        85 ~Gl~~~~~~~Iits~~~  101 (251)
                      ++.... |+.+++.++.
T Consensus       104 ld~~~~-f~~~l~rd~~  119 (195)
T 2hhl_A          104 LDRWGV-FRARLFRESC  119 (195)
T ss_dssp             HCCSSC-EEEEECGGGC
T ss_pred             hCCccc-EEEEEEcccc
Confidence            888876 6778776654

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=98.08  E-value=3.6e-06  Score=70.28  Aligned_cols=49  Identities=14%  Similarity=0.053  Sum_probs=36.1

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .++||+.++|+.|+++|++++++||+++.  .....++  |+...  +.++++..
T Consensus        77 ~~~pg~~~~l~~L~~~g~~~~ivS~~~~~--~~~~~l~--~l~~~--~~v~~~~~  125 (236)
T 2fea_A           77 KIREGFREFVAFINEHEIPFYVISGGMDF--FVYPLLE--GIVEK--DRIYCNHA  125 (236)
T ss_dssp             CBCTTHHHHHHHHHHHTCCEEEEEEEEHH--HHHHHHT--TTSCG--GGEEEEEE
T ss_pred             CCCccHHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHh--cCCCC--CeEEeeee
Confidence            35799999999999999999999998642  2334454  76443  56777654

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=98.08  E-value=3e-06  Score=70.50  Aligned_cols=48  Identities=15%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ++||+.++|+.|++. ++++++||+.+.  .....++.+|+.   |+.++++..
T Consensus       121 ~~~~~~~~l~~l~~~-~~~~i~s~~~~~--~~~~~l~~~g~~---f~~~~~~~~  168 (254)
T 3umc_A          121 PWPDTLAGMHALKAD-YWLAALSNGNTA--LMLDVARHAGLP---WDMLLCADL  168 (254)
T ss_dssp             ECTTHHHHHHHHTTT-SEEEECCSSCHH--HHHHHHHHHTCC---CSEECCHHH
T ss_pred             CCccHHHHHHHHHhc-CeEEEEeCCCHH--HHHHHHHHcCCC---cceEEeecc
Confidence            368999999999885 999999997642  345667778886   477777654

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=98.08  E-value=2.7e-06  Score=70.60  Aligned_cols=48  Identities=25%  Similarity=0.435  Sum_probs=37.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceee
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iit   97 (251)
                      .++||+.++|+.|+++| +++++||+++..  ....|+++|+... |+.++.
T Consensus        96 ~~~~g~~~~l~~l~~~g-~~~i~Tn~~~~~--~~~~l~~~gl~~~-f~~~~~  143 (231)
T 2p11_A           96 RVYPGALNALRHLGARG-PTVILSDGDVVF--QPRKIARSGLWDE-VEGRVL  143 (231)
T ss_dssp             GBCTTHHHHHHHHHTTS-CEEEEEECCSSH--HHHHHHHTTHHHH-TTTCEE
T ss_pred             CcCccHHHHHHHHHhCC-CEEEEeCCCHHH--HHHHHHHcCcHHh-cCeeEE
Confidence            35799999999999999 999999987543  5577888898766 555443

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=98.05  E-value=4.7e-06  Score=72.76  Aligned_cols=51  Identities=16%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             HHhcccCccEEEEeccccccCC-Cc-cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           23 HIAETRRFKAWLLDQFGVLHDG-KK-PYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        23 ~~~~~~~~~~~l~D~DGvL~~g-~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      .-+++|.++.|+||+||||.+. .. +-+...++|++|+++|++++++|+.+.
T Consensus        20 ~~~~~M~ikli~~DlDGTLl~~~~~~is~~~~~al~~l~~~Gi~v~iaTGR~~   72 (301)
T 2b30_A           20 EALKGADIKLLLIDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSK   72 (301)
T ss_dssp             HHTTTCCCCEEEEETBTTTBCCTTTCSCHHHHHHHHHHHHHTCEEEEECSSCH
T ss_pred             hccccccccEEEEECCCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            3344456899999999999987 54 557899999999999999999998763

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=98.05  E-value=4.8e-06  Score=70.76  Aligned_cols=45  Identities=13%  Similarity=0.054  Sum_probs=40.3

Q ss_pred             cCccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      |.++.++||+||||.+... +-+...++|++|+++|++++++|+.+
T Consensus         2 M~~kli~~DlDGTLl~~~~~i~~~~~~~l~~l~~~g~~~~iaTGR~   47 (246)
T 3f9r_A            2 MKRVLLLFDVDGTLTPPRLCQTDEMRALIKRARGAGFCVGTVGGSD   47 (246)
T ss_dssp             CCSEEEEECSBTTTBSTTSCCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCceEEEEeCcCCcCCCCCccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            6789999999999998775 45788999999999999999999866

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=98.04  E-value=2.8e-06  Score=68.84  Aligned_cols=51  Identities=22%  Similarity=0.373  Sum_probs=41.0

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ++||+.++|+.|+++ ++++++||+++  ......++++|+... |+.++++.+.
T Consensus        84 ~~~~~~~~l~~l~~~-~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  134 (209)
T 2hdo_A           84 LYPGITSLFEQLPSE-LRLGIVTSQRR--NELESGMRSYPFMMR-MAVTISADDT  134 (209)
T ss_dssp             ECTTHHHHHHHSCTT-SEEEEECSSCH--HHHHHHHTTSGGGGG-EEEEECGGGS
T ss_pred             cCCCHHHHHHHHHhc-CcEEEEeCCCH--HHHHHHHHHcChHhh-ccEEEecCcC
Confidence            578999999999999 99999999863  235567888999877 6888887653

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=98.03  E-value=6.4e-06  Score=66.24  Aligned_cols=43  Identities=26%  Similarity=0.306  Sum_probs=32.6

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .+.||+.++|+.|+++|++++++||+...  .....++.+|+...
T Consensus        76 ~l~~~~~~~l~~l~~~g~~~~i~T~~~~~--~~~~~~~~~~~~~~  118 (211)
T 1l7m_A           76 TPTEGAEETIKELKNRGYVVAVVSGGFDI--AVNKIKEKLGLDYA  118 (211)
T ss_dssp             CBCTTHHHHHHHHHHTTEEEEEEEEEEHH--HHHHHHHHHTCSEE
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEcCCcHH--HHHHHHHHcCCCeE
Confidence            45689999999999999999999986632  23345667787644

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=98.03  E-value=8.7e-06  Score=70.19  Aligned_cols=57  Identities=19%  Similarity=0.245  Sum_probs=46.3

Q ss_pred             ccEEEEeccccccCCCcc-CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           30 FKAWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~-~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      +++|+||+||||.+.... .+...++|++|+++|++++++|+.+  ...+...++.+|++
T Consensus         4 ikli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~   61 (288)
T 1nrw_A            4 MKLIAIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTGRA--HFDVMSIFEPLGIK   61 (288)
T ss_dssp             CCEEEEECCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHGGGTCC
T ss_pred             eEEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHcCCC
Confidence            789999999999987654 4788999999999999999999765  33355566777765

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=98.02  E-value=6.7e-06  Score=69.61  Aligned_cols=58  Identities=24%  Similarity=0.280  Sum_probs=46.1

Q ss_pred             CccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      .+++++||+||||.+... ..+...++|++++++|++++++|+.+...  +...++.+|++
T Consensus         4 M~kli~fDlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~--~~~~~~~~~~~   62 (274)
T 3fzq_A            4 LYKLLILDIDGTLRDEVYGIPESAKHAIRLCQKNHCSVVICTGRSMGT--IQDDVLSLGVD   62 (274)
T ss_dssp             CCCEEEECSBTTTBBTTTBCCHHHHHHHHHHHHTTCEEEEECSSCTTT--SCHHHHTTCCS
T ss_pred             cceEEEEECCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEeCCChHH--HHHHHHHcCCC
Confidence            379999999999999875 45788999999999999999999876422  33455666664

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=98.02  E-value=5.2e-06  Score=66.94  Aligned_cols=41  Identities=12%  Similarity=0.077  Sum_probs=33.6

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      ++||+.++|+.|+++|++++++||+.+.  .+...++++|+..
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~--~~~~~~~~~~~~~  123 (219)
T 3kd3_A           83 LTDGIKELVQDLKNKGFEIWIFSGGLSE--SIQPFADYLNIPR  123 (219)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEEHH--HHHHHHHHHTCCG
T ss_pred             CChhHHHHHHHHHHCCCeEEEEcCCcHH--HHHHHHHHcCCCc
Confidence            6789999999999999999999997632  3456778888863

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=97.99  E-value=5.2e-06  Score=72.16  Aligned_cols=58  Identities=17%  Similarity=0.146  Sum_probs=44.8

Q ss_pred             cCccEEEEeccccccCCCccCc-c-HHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYP-G-AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~p-G-a~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      |.++.|+||+||||++....++ . ..++|++|+++|++++++|+.+.  ..+...++.+|+
T Consensus        35 M~iKli~fDlDGTLld~~~~i~~~~~~~al~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~   94 (304)
T 3l7y_A           35 MSVKVIATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSNPY--RQLREHFPDCHE   94 (304)
T ss_dssp             -CCSEEEECCCCCCSCTTSCCCHHHHHHHHHHHHHTTCEEEEECSSCH--HHHHTTCTTTGG
T ss_pred             eeeEEEEEeCCCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHhCC
Confidence            4689999999999999887665 4 57999999999999999997652  233344455554

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=97.96  E-value=5.8e-06  Score=67.22  Aligned_cols=69  Identities=10%  Similarity=-0.028  Sum_probs=54.2

Q ss_pred             CccEEEEeccccccCCC------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh
Q 025564           29 RFKAWLLDQFGVLHDGK------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~   84 (251)
                      +...+++|+|+||++..                        ...||+.++|++|++. ++++|+||+++..  ....++.
T Consensus        14 ~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~-~~i~I~T~~~~~~--a~~vl~~   90 (181)
T 2ght_A           14 DKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAKY--ADPVADL   90 (181)
T ss_dssp             TSCEEEECCBTTTEEEESSCCSSCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH--HHHHHHH
T ss_pred             CCeEEEECCCCCeECCcccCCCCccceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhC-CCEEEEcCCCHHH--HHHHHHH
Confidence            55799999999998642                        3589999999999997 9999999988533  3356677


Q ss_pred             CCCCCccccceeechhh
Q 025564           85 LGFDPSLFAGAITSGEL  101 (251)
Q Consensus        85 ~Gl~~~~~~~Iits~~~  101 (251)
                      ++.... |..+++.++.
T Consensus        91 ld~~~~-f~~~~~rd~~  106 (181)
T 2ght_A           91 LDKWGA-FRARLFRESC  106 (181)
T ss_dssp             HCTTCC-EEEEECGGGS
T ss_pred             HCCCCc-EEEEEeccCc
Confidence            788766 6777776543

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=97.93  E-value=7.3e-06  Score=65.39  Aligned_cols=84  Identities=24%  Similarity=0.127  Sum_probs=51.6

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh----------hHHHHHhccCchhhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE----------LTHQYLLRRDDAWFA  115 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~----------~~~~~L~~~~~~~~~  115 (251)
                      .+.||+.++|+.|+++|++++++||+++...  ... +.+|+... ++.+.+.+.          .....+++. .    
T Consensus        79 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~--~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~l-~----  149 (201)
T 4ap9_A           79 NVSPEARELVETLREKGFKVVLISGSFEEVL--EPF-KELGDEFM-ANRAIFEDGKFQGIRLRFRDKGEFLKRF-R----  149 (201)
T ss_dssp             CCCHHHHHHHHHHHHTTCEEEEEEEEETTTS--GGG-TTTSSEEE-EEEEEEETTEEEEEECCSSCHHHHHGGG-T----
T ss_pred             CCChhHHHHHHHHHHCCCeEEEEeCCcHHHH--HHH-HHcCchhh-eeeEEeeCCceECCcCCccCHHHHHHhc-C----
Confidence            4578999999999999999999999875332  233 66787655 344443331          122333333 2    


Q ss_pred             hcCCeEEEeccCCcccccccCCCce
Q 025564          116 ALGRSCIHMTWSDRGAISLEGLGLK  140 (251)
Q Consensus       116 ~~g~~~~~~g~~~~~~~~l~~~g~~  140 (251)
                        ...++.+|.+..+...++..|+.
T Consensus       150 --~~~~i~iGD~~~Di~~~~~ag~~  172 (201)
T 4ap9_A          150 --DGFILAMGDGYADAKMFERADMG  172 (201)
T ss_dssp             --TSCEEEEECTTCCHHHHHHCSEE
T ss_pred             --cCcEEEEeCCHHHHHHHHhCCce
Confidence              24677777654444455556653

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=97.91  E-value=1.3e-05  Score=67.90  Aligned_cols=56  Identities=21%  Similarity=0.348  Sum_probs=44.4

Q ss_pred             CccEEEEeccccccC-CC-ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           29 RFKAWLLDQFGVLHD-GK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~-g~-~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      .+|.++||+||||.+ .. ..-+...++|++|+++|++++++|+.+...  + ..++.+++
T Consensus        11 miKli~~DlDGTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~--~-~~~~~l~~   68 (268)
T 3r4c_A           11 MIKVLLLDVDGTLLSFETHKVSQSSIDALKKVHDSGIKIVIATGRAASD--L-HEIDAVPY   68 (268)
T ss_dssp             CCCEEEECSBTTTBCTTTCSCCHHHHHHHHHHHHTTCEEEEECSSCTTC--C-GGGTTSCC
T ss_pred             ceEEEEEeCCCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHH--h-HHHHhcCC
Confidence            589999999999998 43 566889999999999999999999876432  2 33455554

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=97.89  E-value=1.2e-05  Score=63.89  Aligned_cols=52  Identities=25%  Similarity=0.346  Sum_probs=40.6

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ..+.||+.++|+.|++.|++++++||+....  .. .++.+|+... |+.++++.+
T Consensus        84 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~--~~-~~~~~~~~~~-f~~~~~~~~  135 (207)
T 2go7_A           84 VVLMPGAREVLAWADESGIQQFIYTHKGNNA--FT-ILKDLGVESY-FTEILTSQS  135 (207)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCTHH--HH-HHHHHTCGGG-EEEEECGGG
T ss_pred             ceeCcCHHHHHHHHHHCCCeEEEEeCCchHH--HH-HHHHcCchhh-eeeEEecCc
Confidence            3467899999999999999999999987432  34 6677888877 677777654

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=97.89  E-value=1.6e-05  Score=67.96  Aligned_cols=16  Identities=25%  Similarity=0.397  Sum_probs=14.2

Q ss_pred             CccEEEEeccccccCC
Q 025564           29 RFKAWLLDQFGVLHDG   44 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g   44 (251)
                      .+++++||+||||++.
T Consensus        30 ~ikaviFDlDGTLvDs   45 (253)
T 2g80_A           30 NYSTYLLDIEGTVCPI   45 (253)
T ss_dssp             CCSEEEECCBTTTBCT
T ss_pred             CCcEEEEcCCCCcccc
Confidence            5899999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.87  E-value=2.9e-05  Score=67.20  Aligned_cols=69  Identities=19%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             ccEEEEeccccccCCC-------------ccCccHHHHHHHHHHCCCeEEEEeCCCCC-chhHHHHhHh--------CCC
Q 025564           30 FKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKS--------LGF   87 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~-------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~~~~~~~L~~--------~Gl   87 (251)
                      .+.+++|+||++....             .++||+.++|+.|+++|++++++||+++. .+.....|++        +|+
T Consensus       159 ~~~i~iD~dgtl~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~~~  238 (301)
T 1ltq_A          159 PKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGV  238 (301)
T ss_dssp             CEEEEEETBTTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCC
T ss_pred             cceEEEeCCCCcccccCCCchhhhhccccCCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHhcccccccccCC
Confidence            4689999999975432             24899999999999999999999999853 2334456777        898


Q ss_pred             CCccccceeechhh
Q 025564           88 DPSLFAGAITSGEL  101 (251)
Q Consensus        88 ~~~~~~~Iits~~~  101 (251)
                        . |+.++++++.
T Consensus       239 --~-~~~~~~~~~~  249 (301)
T 1ltq_A          239 --P-LVMQCQREQG  249 (301)
T ss_dssp             --C-CSEEEECCTT
T ss_pred             --C-chheeeccCC
Confidence              3 5778876653

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=97.86  E-value=1.9e-05  Score=67.44  Aligned_cols=56  Identities=14%  Similarity=0.132  Sum_probs=44.5

Q ss_pred             ccEEEEeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           30 FKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      ++.++||+||||++....+ +...++|++ +++|++++++|+.+.  ..+...++.+|++
T Consensus         2 ikli~~DlDGTLl~~~~~i~~~~~~al~~-~~~Gi~v~iaTGR~~--~~~~~~~~~l~~~   58 (268)
T 1nf2_A            2 YRVFVFDLDGTLLNDNLEISEKDRRNIEK-LSRKCYVVFASGRML--VSTLNVEKKYFKR   58 (268)
T ss_dssp             BCEEEEECCCCCSCTTSCCCHHHHHHHHH-HTTTSEEEEECSSCH--HHHHHHHHHHSSS
T ss_pred             ccEEEEeCCCcCCCCCCccCHHHHHHHHH-HhCCCEEEEECCCCh--HHHHHHHHHhCCC
Confidence            6899999999999876544 778999999 999999999998663  3344556666764

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=97.79  E-value=2.4e-05  Score=66.21  Aligned_cols=42  Identities=24%  Similarity=0.272  Sum_probs=37.8

Q ss_pred             cEEEEeccccccCCCc--cCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           31 KAWLLDQFGVLHDGKK--PYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~~--~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      +.++||+||||.+...  +-+...++|++|+++|++++++|+.+
T Consensus         3 kli~~DlDGTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~   46 (261)
T 2rbk_A            3 KALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRP   46 (261)
T ss_dssp             CEEEECSBTTTBCTTTSSCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEeCCCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            8999999999998775  44788999999999999999999876

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=97.78  E-value=2.8e-05  Score=65.30  Aligned_cols=49  Identities=14%  Similarity=0.053  Sum_probs=29.6

Q ss_pred             CccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc-cceeech
Q 025564           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF-AGAITSG   99 (251)
Q Consensus        48 ~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~-~~Iits~   99 (251)
                      +||+.++++.|++.|++++++||++..  .....++.+|+... | +.+++++
T Consensus       105 ~~~~~~~l~~l~~~g~~~~i~t~~~~~--~~~~~l~~~~~~~~-~~~~~~~~~  154 (267)
T 1swv_A          105 INGVKEVIASLRERGIKIGSTTGYTRE--MMDIVAKEAALQGY-KPDFLVTPD  154 (267)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEBCSSCHH--HHHHHHHHHHHTTC-CCSCCBCGG
T ss_pred             CccHHHHHHHHHHcCCeEEEEcCCCHH--HHHHHHHHcCCccc-ChHheecCC
Confidence            456667777788888888888876532  23344555555544 2 4555544

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=97.75  E-value=2.3e-05  Score=69.13  Aligned_cols=43  Identities=16%  Similarity=0.072  Sum_probs=34.6

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .++||+.++|+.|+++|++++++||+...  .....++++|+...
T Consensus       178 ~~~pg~~~~l~~L~~~g~~~~ivS~~~~~--~~~~~~~~lgl~~~  220 (335)
T 3n28_A          178 PLMPELPELVATLHAFGWKVAIASGGFTY--FSDYLKEQLSLDYA  220 (335)
T ss_dssp             CCCTTHHHHHHHHHHTTCEEEEEEEEEHH--HHHHHHHHHTCSEE
T ss_pred             CcCcCHHHHHHHHHHCCCEEEEEeCCcHH--HHHHHHHHcCCCeE
Confidence            46899999999999999999999997632  24456677898754

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=97.75  E-value=5.8e-05  Score=64.75  Aligned_cols=59  Identities=10%  Similarity=-0.099  Sum_probs=46.4

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHH--------HHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLE--------MLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~--------~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .+++++||+||||.+.. ..|...+.+.        .+++.|.+++++|+.+  ...+...++.+|++..
T Consensus        21 ~~kliifDlDGTLlds~-i~~~~~~~l~~~~~~l~~~~~~~g~~~~~~tGr~--~~~~~~~~~~~g~~~~   87 (289)
T 3gyg_A           21 PQYIVFCDFDETYFPHT-IDEQKQQDIYELEDYLEQKSKDGELIIGWVTGSS--IESILDKMGRGKFRYF   87 (289)
T ss_dssp             CSEEEEEETBTTTBCSS-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEECSSC--HHHHHHHHHHTTCCBC
T ss_pred             CCeEEEEECCCCCcCCC-CCcchHHHHHHHHHHHHHHHhcCCcEEEEEcCCC--HHHHHHHHHhhccCCC
Confidence            57899999999999977 6677777777        5577899999999654  4456677788888654

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=97.73  E-value=2.7e-05  Score=65.45  Aligned_cols=44  Identities=20%  Similarity=0.150  Sum_probs=38.9

Q ss_pred             cCccEEEEeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      |+++.+++|+||||.+....+ +...++|++|+++ ++++++|+.+
T Consensus         4 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~-i~v~iaTGR~   48 (246)
T 2amy_A            4 PGPALCLFDVDGTLTAPRQKITKEMDDFLQKLRQK-IKIGVVGGSD   48 (246)
T ss_dssp             CCSEEEEEESBTTTBCTTSCCCHHHHHHHHHHTTT-SEEEEECSSC
T ss_pred             CCceEEEEECCCCcCCCCcccCHHHHHHHHHHHhC-CeEEEEcCCC
Confidence            578999999999999877644 7889999999999 9999999765

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=97.69  E-value=3.2e-05  Score=65.06  Aligned_cols=53  Identities=17%  Similarity=0.066  Sum_probs=40.5

Q ss_pred             ccEEEEeccccccCC------CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhC
Q 025564           30 FKAWLLDQFGVLHDG------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL   85 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~   85 (251)
                      ++.+++|+||||.+.      ..+-+...++|++|+++| +++++|+.+  ...+...++.+
T Consensus         1 ikli~~DlDGTLl~~~~~~~~~~i~~~~~~al~~l~~~g-~v~iaTGR~--~~~~~~~~~~l   59 (239)
T 1u02_A            1 MSLIFLDYDGTLVPIIMNPEESYADAGLLSLISDLKERF-DTYIVTGRS--PEEISRFLPLD   59 (239)
T ss_dssp             -CEEEEECBTTTBCCCSCGGGCCCCHHHHHHHHHHHHHS-EEEEECSSC--HHHHHHHSCSS
T ss_pred             CeEEEEecCCCCcCCCCCcccCCCCHHHHHHHHHHhcCC-CEEEEeCCC--HHHHHHHhccc
Confidence            478999999999973      356688999999999999 999999765  33344444443

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=97.63  E-value=8.5e-05  Score=64.04  Aligned_cols=100  Identities=14%  Similarity=0.103  Sum_probs=68.5

Q ss_pred             CccEEEEecccccc----CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        29 ~~~~~l~D~DGvL~----~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      ..+.+.+|+|+++.    ....++||+.++|+.|+++|++++++||+++.  .....++++|+... |+.++....  ..
T Consensus       142 g~~~i~~~~d~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~--~~~~~l~~~gl~~~-f~~i~~~~K--~~  216 (287)
T 3a1c_A          142 AKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWR--SAEAISRELNLDLV-IAEVLPHQK--SE  216 (287)
T ss_dssp             TCEEEEEEETTEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHHTCSEE-ECSCCTTCH--HH
T ss_pred             CCeEEEEEECCEEEEEEEeccccchhHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHhCCcee-eeecChHHH--HH
Confidence            45789999999764    35689999999999999999999999998743  24567788899877 677764322  22


Q ss_pred             HHhccCchhhhhcCCeEEEeccCCcccccccCCCc
Q 025564          105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGL  139 (251)
Q Consensus       105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~  139 (251)
                      .+++...     . ..++++|.+..+...++..|+
T Consensus       217 ~~~~l~~-----~-~~~~~vGDs~~Di~~a~~ag~  245 (287)
T 3a1c_A          217 EVKKLQA-----K-EVVAFVGDGINDAPALAQADL  245 (287)
T ss_dssp             HHHHHTT-----T-CCEEEEECTTTCHHHHHHSSE
T ss_pred             HHHHHhc-----C-CeEEEEECCHHHHHHHHHCCe
Confidence            2333221     1 456667765444444444554

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=97.57  E-value=2.7e-05  Score=65.71  Aligned_cols=57  Identities=11%  Similarity=0.028  Sum_probs=42.1

Q ss_pred             cCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      |++ .+++|+||||.+....++...++|++++ +|++++++|..+  ...+...++.+|+.
T Consensus         2 ~~~-li~~DlDGTLl~~~~~~~~~~~~l~~~~-~gi~v~iaTGR~--~~~~~~~~~~l~l~   58 (244)
T 1s2o_A            2 RQL-LLISDLDNTWVGDQQALEHLQEYLGDRR-GNFYLAYATGRS--YHSARELQKQVGLM   58 (244)
T ss_dssp             CSE-EEEECTBTTTBSCHHHHHHHHHHHHTTG-GGEEEEEECSSC--HHHHHHHHHHHTCC
T ss_pred             CCe-EEEEeCCCCCcCCHHHHHHHHHHHHHhc-CCCEEEEEcCCC--HHHHHHHHHHcCCC
Confidence            344 8999999999987766677777787765 589999999765  33455566666664

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=97.54  E-value=5.9e-05  Score=63.79  Aligned_cols=41  Identities=24%  Similarity=0.254  Sum_probs=36.9

Q ss_pred             EEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        32 ~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      .|+||+||||.+.....+...++|++|+++|++++++|..+
T Consensus         2 li~~DlDGTLl~~~~i~~~~~~al~~l~~~Gi~v~iaTGR~   42 (259)
T 3zx4_A            2 IVFTDLDGTLLDERGELGPAREALERLRALGVPVVPVTAKT   42 (259)
T ss_dssp             EEEECCCCCCSCSSSSCSTTHHHHHHHHHTTCCEEEBCSSC
T ss_pred             EEEEeCCCCCcCCCcCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999888666889999999999999999999755

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=97.51  E-value=7.9e-05  Score=63.38  Aligned_cols=43  Identities=21%  Similarity=0.279  Sum_probs=37.3

Q ss_pred             CccEEEEeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           29 RFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      +++.+++|+||||.+....+ +...++|++|+++ ++++++|..+
T Consensus        12 ~~kli~~DlDGTLl~~~~~is~~~~~al~~l~~~-i~v~iaTGR~   55 (262)
T 2fue_A           12 ERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSR-VQIGVVGGSD   55 (262)
T ss_dssp             -CEEEEEESBTTTBSTTSCCCHHHHHHHHHHTTT-SEEEEECSSC
T ss_pred             CeEEEEEeCccCCCCCCCcCCHHHHHHHHHHHhC-CEEEEEcCCC
Confidence            68999999999999877644 7889999999998 9999999754

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=97.41  E-value=0.00015  Score=58.96  Aligned_cols=46  Identities=24%  Similarity=0.283  Sum_probs=26.6

Q ss_pred             ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc-cceeechh
Q 025564           49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF-AGAITSGE  100 (251)
Q Consensus        49 pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~-~~Iits~~  100 (251)
                      ||+.++|+.|+   .+++++||+.+  ..+...++++|+... | +.++++..
T Consensus        90 ~~~~~~l~~l~---~~~~i~s~~~~--~~~~~~l~~~~l~~~-~~~~~~~~~~  136 (229)
T 2fdr_A           90 DGVKFALSRLT---TPRCICSNSSS--HRLDMMLTKVGLKPY-FAPHIYSAKD  136 (229)
T ss_dssp             TTHHHHHHHCC---SCEEEEESSCH--HHHHHHHHHTTCGGG-TTTCEEEHHH
T ss_pred             cCHHHHHHHhC---CCEEEEECCCh--hHHHHHHHhCChHHh-ccceEEeccc
Confidence            44444444443   37788887653  224456677777765 6 56666554

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=97.33  E-value=0.00039  Score=57.40  Aligned_cols=54  Identities=24%  Similarity=0.281  Sum_probs=44.6

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ..++||+.++|+.|+++|++++++||+++.  .....++++|+... |+.+++++.+
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~~  146 (241)
T 2hoq_A           93 LREVPGARKVLIRLKELGYELGIITDGNPV--KQWEKILRLELDDF-FEHVIISDFE  146 (241)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEECSCHH--HHHHHHHHTTCGGG-CSEEEEGGGG
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEECCCch--hHHHHHHHcCcHhh-ccEEEEeCCC
Confidence            357899999999999999999999997632  34567888999887 6888887754

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=96.26  E-value=5.6e-05  Score=64.56  Aligned_cols=56  Identities=18%  Similarity=0.291  Sum_probs=44.7

Q ss_pred             cccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccccee
Q 025564           38 FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (251)
Q Consensus        38 DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Ii   96 (251)
                      .|++.....++||+.++|++|+++|++++++||+++..  ....++++|+... |+.++
T Consensus       128 ~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~--~~~~~~~~gl~~~-f~~~~  183 (263)
T 2yj3_A          128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDK--VKELSKELNIQEY-YSNLS  183 (263)
Confidence            34555667899999999999999999999999987533  4466788899877 56665

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=97.08  E-value=0.00039  Score=63.01  Aligned_cols=55  Identities=18%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccc--ceeechhhH
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA--GAITSGELT  102 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~--~Iits~~~~  102 (251)
                      ..++||+.++|+.|+++|++++++||+++.  .+...|+++|+... |+  .+++++++.
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~--~~~~~L~~lgL~~~-Fd~~~Ivs~ddv~  270 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRPYT--ETVVPFENLGLLPY-FEADFIATASDVL  270 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHHTCGGG-SCGGGEECHHHHH
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCcHH--HHHHHHHHcCChHh-cCCCEEEeccccc
Confidence            467899999999999999999999998743  35577888999887 78  788887754

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=96.89  E-value=0.0017  Score=52.52  Aligned_cols=89  Identities=17%  Similarity=0.132  Sum_probs=58.2

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCCCccccceeechhhH---------HHHHhccCchhhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSLFAGAITSGELT---------HQYLLRRDDAWFA  115 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~~~~~~~Iits~~~~---------~~~L~~~~~~~~~  115 (251)
                      .++||+.++|+.|++.|++++++||+.. ........++.+|+... |+.++++.+..         ...+++.+.+   
T Consensus        99 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~---  174 (235)
T 2om6_A           99 LVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEF-IDKTFFADEVLSYKPRKEMFEKVLNSFEVK---  174 (235)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCGGG-CSEEEEHHHHTCCTTCHHHHHHHHHHTTCC---
T ss_pred             CcCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcHHH-hhhheeccccCCCCCCHHHHHHHHHHcCCC---
Confidence            3589999999999999999999999871 12234567888999887 68888876432         1122222211   


Q ss_pred             hcCCeEEEeccCC-cccccccCCCce
Q 025564          116 ALGRSCIHMTWSD-RGAISLEGLGLK  140 (251)
Q Consensus       116 ~~g~~~~~~g~~~-~~~~~l~~~g~~  140 (251)
                        -..++.+|.+. .+...++..|+.
T Consensus       175 --~~~~~~iGD~~~nDi~~a~~aG~~  198 (235)
T 2om6_A          175 --PEESLHIGDTYAEDYQGARKVGMW  198 (235)
T ss_dssp             --GGGEEEEESCTTTTHHHHHHTTSE
T ss_pred             --ccceEEECCChHHHHHHHHHCCCE
Confidence              13577777654 334445556654

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=96.88  E-value=0.0008  Score=55.68  Aligned_cols=53  Identities=25%  Similarity=0.358  Sum_probs=44.1

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ...++||+.++|+.|+++|++++++||+++  ......|+++|+. . |+.++++++
T Consensus       108 ~~~~~~g~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~-~-f~~~~~~~~  160 (240)
T 2hi0_A          108 KTGPFPGILDLMKNLRQKGVKLAVVSNKPN--EAVQVLVEELFPG-S-FDFALGEKS  160 (240)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHHSTT-T-CSEEEEECT
T ss_pred             cCCcCCCHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCc-c-eeEEEecCC
Confidence            456899999999999999999999999764  2355678888988 7 788888775

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=96.66  E-value=0.0027  Score=53.75  Aligned_cols=52  Identities=12%  Similarity=0.100  Sum_probs=41.4

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH---hCCCCCccccceeec
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK---SLGFDPSLFAGAITS   98 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~---~~Gl~~~~~~~Iits   98 (251)
                      ...++||+.++|+.|+++|++++++||+++..  ....|+   ..|+... |+.++++
T Consensus       128 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~--~~~~l~~~~~~~l~~~-fd~i~~~  182 (261)
T 1yns_A          128 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEA--QKLLFGHSTEGDILEL-VDGHFDT  182 (261)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSCHHH--HHHHHHTBTTBCCGGG-CSEEECG
T ss_pred             ccccCcCHHHHHHHHHhCCCeEEEEeCCCHHH--HHHHHHhhcccChHhh-ccEEEec
Confidence            35789999999999999999999999988532  334555   4568887 7888877

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=96.63  E-value=0.0017  Score=53.68  Aligned_cols=65  Identities=15%  Similarity=0.015  Sum_probs=48.0

Q ss_pred             CccEEEEeccccccCCC---------ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC-ccccceee
Q 025564           29 RFKAWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGAIT   97 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~---------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~-~~~~~Iit   97 (251)
                      +..++++|+|+||.+..         ...||+.++|++|. +++.++|.|++++..  ....++.++... . |...+.
T Consensus        33 ~~~tLVLDLDeTLvh~~~~~~~~~~v~~RPgl~eFL~~l~-~~yeivI~Tas~~~y--a~~vl~~LDp~~~~-f~~rl~  107 (204)
T 3qle_A           33 RPLTLVITLEDFLVHSEWSQKHGWRTAKRPGADYFLGYLS-QYYEIVLFSSNYMMY--SDKIAEKLDPIHAF-VSYNLF  107 (204)
T ss_dssp             CSEEEEEECBTTTEEEEEETTTEEEEEECTTHHHHHHHHT-TTEEEEEECSSCHHH--HHHHHHHTSTTCSS-EEEEEC
T ss_pred             CCeEEEEeccccEEeeeccccCceeEEeCCCHHHHHHHHH-hCCEEEEEcCCcHHH--HHHHHHHhCCCCCe-EEEEEE
Confidence            56799999999998642         45799999999998 789999999887533  334556666653 3 444443

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=96.62  E-value=0.0038  Score=51.59  Aligned_cols=88  Identities=14%  Similarity=0.097  Sum_probs=58.3

Q ss_pred             CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh----HHHHHhccCchhhhhcC
Q 025564           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL----THQYLLRRDDAWFAALG  118 (251)
Q Consensus        43 ~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~----~~~~L~~~~~~~~~~~g  118 (251)
                      ....++||+.++|+.|+ .|++++++||+++.  .....++.+|+... |+.++++...    ....+++.+.+     -
T Consensus       109 ~~~~~~~~~~~~l~~l~-~~~~~~i~t~~~~~--~~~~~l~~~~l~~~-f~~i~~~~kp~~~~~~~~~~~l~~~-----~  179 (251)
T 2pke_A          109 HPVEVIAGVREAVAAIA-ADYAVVLITKGDLF--HQEQKIEQSGLSDL-FPRIEVVSEKDPQTYARVLSEFDLP-----A  179 (251)
T ss_dssp             CCCCBCTTHHHHHHHHH-TTSEEEEEEESCHH--HHHHHHHHHSGGGT-CCCEEEESCCSHHHHHHHHHHHTCC-----G
T ss_pred             ccCCcCccHHHHHHHHH-CCCEEEEEeCCCHH--HHHHHHHHcCcHHh-CceeeeeCCCCHHHHHHHHHHhCcC-----c
Confidence            44578999999999999 99999999998742  34567888899877 6888875432    22222332221     1


Q ss_pred             CeEEEeccCC-cccccccCCCc
Q 025564          119 RSCIHMTWSD-RGAISLEGLGL  139 (251)
Q Consensus       119 ~~~~~~g~~~-~~~~~l~~~g~  139 (251)
                      ..++++|.+. .+...++..|+
T Consensus       180 ~~~i~iGD~~~~Di~~a~~aG~  201 (251)
T 2pke_A          180 ERFVMIGNSLRSDVEPVLAIGG  201 (251)
T ss_dssp             GGEEEEESCCCCCCHHHHHTTC
T ss_pred             hhEEEECCCchhhHHHHHHCCC
Confidence            4577777654 44444555565

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=96.48  E-value=0.0027  Score=50.92  Aligned_cols=50  Identities=22%  Similarity=0.321  Sum_probs=40.8

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .++||+.++|+.|++.|++++++||+ .   .....++++|+... |+.++++..
T Consensus        91 ~~~~~~~~~l~~l~~~g~~~~i~t~~-~---~~~~~l~~~~l~~~-f~~~~~~~~  140 (221)
T 2wf7_A           91 DVYPGILQLLKDLRSNKIKIALASAS-K---NGPFLLERMNLTGY-FDAIADPAE  140 (221)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCCC-T---THHHHHHHTTCGGG-CSEECCTTT
T ss_pred             CCCCCHHHHHHHHHHCCCeEEEEcCc-H---HHHHHHHHcChHHH-cceEecccc
Confidence            57899999999999999999999997 2   23456778898877 677877654

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=96.36  E-value=0.00095  Score=55.37  Aligned_cols=37  Identities=11%  Similarity=-0.041  Sum_probs=29.3

Q ss_pred             CccEEEEeccccccCCCccC-ccHHHHHHHHHHCCCeE
Q 025564           29 RFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKM   65 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v   65 (251)
                      .+++++||+||||++....+ +...++++.+++.|.+.
T Consensus        12 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~l~~~g~~~   49 (251)
T 2pke_A           12 AIQLVGFDGDDTLWKSEDYYRTAEADFEAILSGYLDLG   49 (251)
T ss_dssp             SCCEEEECCBTTTBCCHHHHHHHHHHHHHHHTTTCCC-
T ss_pred             ceeEEEEeCCCCCccCcHhHHHHHHHHHHHHHHhCCch
Confidence            58999999999999987654 44566778888888875

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=96.22  E-value=0.003  Score=51.13  Aligned_cols=59  Identities=15%  Similarity=0.077  Sum_probs=33.3

Q ss_pred             cCccEEEEeccccccCCCccCc-cHHHHHHHHHHCCCeEE--EEeCCCCCchh-HHHHhHhCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYP-GAISTLEMLATTGAKMV--VISNSSRRAST-TIDKLKSLGFD   88 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~p-Ga~e~L~~L~~~G~~v~--ivTN~s~~~~~-~~~~L~~~Gl~   88 (251)
                      |.+++++||+||||++....+. ...++++.+  .|.+..  +....++...+ +...++.+|+.
T Consensus         2 M~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   64 (234)
T 2hcf_A            2 MSRTLVLFDIDGTLLKVESMNRRVLADALIEV--YGTEGSTGSHDFSGKMDGAIIYEVLSNVGLE   64 (234)
T ss_dssp             -CCEEEEECCBTTTEEECTHHHHHHHHHHHHH--HSCCCCC---CCTTCCHHHHHHHHHHTTTCC
T ss_pred             CcceEEEEcCCCCcccCccchHHHHHHHHHHH--hCCCCccchhhhcCCChHHHHHHHHHHcCCC
Confidence            4689999999999999876543 333444432  344322  22222343333 45566777775

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=96.15  E-value=0.0044  Score=55.83  Aligned_cols=70  Identities=11%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             cCccEEEEeccccccCCC-----------------------------------------ccCccHHHHHHHHHHCCCeEE
Q 025564           28 RRFKAWLLDQFGVLHDGK-----------------------------------------KPYPGAISTLEMLATTGAKMV   66 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~-----------------------------------------~~~pGa~e~L~~L~~~G~~v~   66 (251)
                      .+.++++||+||||.+..                                         ...||+.+||+++. .++.++
T Consensus        16 ~~k~~LVlDLD~TLvhS~~~~~~~~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l~-~~yeiv   94 (372)
T 3ef0_A           16 EKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKIS-ELYELH   94 (372)
T ss_dssp             HTCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHH-TTEEEE
T ss_pred             CCCCEEEEcCCCCcccccCcCccchhhccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHHh-cCcEEE
Confidence            377899999999998761                                         11699999999999 789999


Q ss_pred             EEeCCCCCchhHHHHhHhCCCCCcccc-ceeechh
Q 025564           67 VISNSSRRASTTIDKLKSLGFDPSLFA-GAITSGE  100 (251)
Q Consensus        67 ivTN~s~~~~~~~~~L~~~Gl~~~~~~-~Iits~~  100 (251)
                      |.|++++..  ....++.++.....|. .+++..+
T Consensus        95 I~Tas~~~y--A~~vl~~LDp~~~~f~~ri~sr~~  127 (372)
T 3ef0_A           95 IYTMGTKAY--AKEVAKIIDPTGKLFQDRVLSRDD  127 (372)
T ss_dssp             EECSSCHHH--HHHHHHHHCTTSCSSSSCEECTTT
T ss_pred             EEeCCcHHH--HHHHHHHhccCCceeeeEEEEecC
Confidence            999988533  2234445555541134 5665443

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=95.96  E-value=0.0079  Score=48.59  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=43.0

Q ss_pred             CCccCccHHHHHHHHHHC-CCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           44 GKKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~-G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ...++||+.++|+.|+++ |++++++||+++.  .....++.+|+... |+.++++.+
T Consensus        91 ~~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~  145 (234)
T 2hcf_A           91 DITLLEGVRELLDALSSRSDVLLGLLTGNFEA--SGRHKLKLPGIDHY-FPFGAFADD  145 (234)
T ss_dssp             GEEECTTHHHHHHHHHTCTTEEEEEECSSCHH--HHHHHHHTTTCSTT-CSCEECTTT
T ss_pred             CCCcCCCHHHHHHHHHhCCCceEEEEcCCcHH--HHHHHHHHCCchhh-cCcceecCC
Confidence            346789999999999999 9999999998742  34567888999887 676666554

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=95.53  E-value=0.0016  Score=57.15  Aligned_cols=38  Identities=13%  Similarity=-0.036  Sum_probs=31.6

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCC
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS   71 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~   71 (251)
                      .+++|+||+||||.+....     +++.+++..|..++++|..
T Consensus        20 ~~kli~fDlDGTLld~~~~-----~~l~~~~~~g~~~~~~tGR   57 (332)
T 1y8a_A           20 QGHMFFTDWEGPWILTDFA-----LELCMAVFNNARFFSNLSE   57 (332)
T ss_dssp             CCCEEEECSBTTTBCCCHH-----HHHHHHHHCCHHHHHHHHH
T ss_pred             CceEEEEECcCCCcCccHH-----HHHHHHHHCCCEEEEEcCC
Confidence            6899999999999998653     7888888888888777753

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=94.78  E-value=0.037  Score=47.49  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=33.4

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      ++.||+.++++.|+++|++++++|..-.  ..+...++++|+...
T Consensus       141 ~l~~g~~e~i~~l~~~gi~v~ivSgg~~--~~i~~i~~~~g~~~~  183 (297)
T 4fe3_A          141 MLKEGYENFFGKLQQHGIPVFIFSAGIG--DVLEEVIRQAGVYHS  183 (297)
T ss_dssp             CBCBTHHHHHHHHHHTTCCEEEEEEEEH--HHHHHHHHHTTCCCT
T ss_pred             CCCCcHHHHHHHHHHcCCeEEEEeCCcH--HHHHHHHHHcCCCcc
Confidence            4679999999999999999999997643  234456677888654

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=94.63  E-value=0.029  Score=49.43  Aligned_cols=56  Identities=25%  Similarity=0.169  Sum_probs=42.6

Q ss_pred             ccEEEEeccccccCCCc--------cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           30 FKAWLLDQFGVLHDGKK--------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~--------~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      .+.+++|+||||.+...        .-||+.+||+++. ..+.++|.|++.+..  ....++.++..
T Consensus       140 k~tLVLDLDeTLvh~~~~~~~~~~~~RP~l~eFL~~l~-~~yeivIfTas~~~y--a~~vld~Ld~~  203 (320)
T 3shq_A          140 KKLLVLDIDYTLFDHRSPAETGTELMRPYLHEFLTSAY-EDYDIVIWSATSMRW--IEEKMRLLGVA  203 (320)
T ss_dssp             CEEEEECCBTTTBCSSSCCSSHHHHBCTTHHHHHHHHH-HHEEEEEECSSCHHH--HHHHHHHTTCT
T ss_pred             CcEEEEeccccEEcccccCCCcceEeCCCHHHHHHHHH-hCCEEEEEcCCcHHH--HHHHHHHhCCC
Confidence            47999999999998653        4799999999999 579999999887532  22344555543

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=94.57  E-value=0.016  Score=47.65  Aligned_cols=66  Identities=17%  Similarity=0.172  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ....++.+.++|.++ ++||.........-...+   +. .+... +.+....|||+|.+|+.+++++|+++
T Consensus       115 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~---l~-~f~~~~~~~~~~~~Kp~p~~~~~~~~~l~~~~  182 (240)
T 2hi0_A          115 ILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELF---PG-SFDFALGEKSGIRRKPAPDMTSECVKVLGVPR  182 (240)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHS---TT-TCSEEEEECTTSCCTTSSHHHHHHHHHHTCCG
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC---Cc-ceeEEEecCCCCCCCCCHHHHHHHHHHcCCCH
Confidence            456666666788887 777754321110000000   00 11111 22223569999999999999999876

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=94.38  E-value=0.011  Score=47.30  Aligned_cols=23  Identities=13%  Similarity=0.021  Sum_probs=19.3

Q ss_pred             EEecCCCHHHHHHHHHhcCCceE
Q 025564          222 RWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       222 ~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ...+||+|..|+.+++++|+++-
T Consensus       141 ~~~~Kp~~~~~~~~~~~lgi~~~  163 (221)
T 2wf7_A          141 VAASKPAPDIFIAAAHAVGVAPS  163 (221)
T ss_dssp             SSSCTTSSHHHHHHHHHTTCCGG
T ss_pred             CCCCCCChHHHHHHHHHcCCChh
Confidence            45789999999999999998763

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=93.68  E-value=0.019  Score=46.99  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=24.2

Q ss_pred             ccEEEEeccccccCCCccCc-cHHHHHHHHHHCC
Q 025564           30 FKAWLLDQFGVLHDGKKPYP-GAISTLEMLATTG   62 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~p-Ga~e~L~~L~~~G   62 (251)
                      +++++||+||||++....+. ...++++.+...|
T Consensus         2 ~k~iiFDlDGTL~d~~~~~~~~~~~~~~~~~~~~   35 (241)
T 2hoq_A            2 VKVIFFDLDDTLVDTSKLAEIARKNAIENMIRHG   35 (241)
T ss_dssp             CCEEEECSBTTTBCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccEEEEcCCCCCCCChhhHHHHHHHHHHHHHHcc
Confidence            68999999999999876553 3455666665544

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=93.34  E-value=0.043  Score=46.77  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             HHhcccCccEEEEeccccccCCCccC
Q 025564           23 HIAETRRFKAWLLDQFGVLHDGKKPY   48 (251)
Q Consensus        23 ~~~~~~~~~~~l~D~DGvL~~g~~~~   48 (251)
                      +-+.  ++++++||+||||+++...+
T Consensus        27 e~l~--~i~~viFD~dGTL~ds~~~~   50 (287)
T 3a1c_A           27 EVAE--KVTAVIFDKTGTLTKGKPEV   50 (287)
T ss_dssp             HHHH--HCCEEEEECCCCCBCSCCEE
T ss_pred             HHhh--cCCEEEEeCCCCCcCCCEEE
Confidence            4444  68999999999999988655

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=93.33  E-value=0.02  Score=46.02  Aligned_cols=21  Identities=24%  Similarity=-0.108  Sum_probs=18.6

Q ss_pred             EecCCCHHHHHHHHHhcCCce
Q 025564          223 WMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       223 ~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ..+||+|.+|+.+++++|+++
T Consensus       155 ~~~kp~~~~~~~~~~~lgi~~  175 (235)
T 2om6_A          155 LSYKPRKEMFEKVLNSFEVKP  175 (235)
T ss_dssp             TCCTTCHHHHHHHHHHTTCCG
T ss_pred             CCCCCCHHHHHHHHHHcCCCc
Confidence            358999999999999999875

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=92.52  E-value=0.019  Score=42.40  Aligned_cols=61  Identities=10%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh--CC--Ce------EEecCCCHHHHHHHHHhc
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL--GG--EV------RWMGKPDKVVQLLCSLSS  239 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~--g~--~~------~~~GKP~~~~~~~a~~~l  239 (251)
                      ++....+++.+.++|.++ ++||.+.....            ..++..  ..  +.      ...+||+|.+|+.+++++
T Consensus        20 ~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~------------~~l~~~~l~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~   87 (137)
T 2pr7_A           20 QRRWRNLLAAAKKNGVGTVILSNDPGGLGA------------APIRELETNGVVDKVLLSGELGVEKPEEAAFQAAADAI   87 (137)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECSCCGGGG------------HHHHHHHHTTSSSEEEEHHHHSCCTTSHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHCCCEEEEEeCCCHHHHH------------HHHHHCChHhhccEEEEeccCCCCCCCHHHHHHHHHHc
Confidence            345667777777789886 66775543321            112211  11  11      235899999999999999


Q ss_pred             CCce
Q 025564          240 SVII  243 (251)
Q Consensus       240 ~~~~  243 (251)
                      ++++
T Consensus        88 ~~~~   91 (137)
T 2pr7_A           88 DLPM   91 (137)
T ss_dssp             TCCG
T ss_pred             CCCc
Confidence            9875

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=92.27  E-value=0.0075  Score=48.20  Aligned_cols=65  Identities=14%  Similarity=0.116  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCC----------CeE----EecCCCHHHHHHHH
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGG----------EVR----WMGKPDKVVQLLCS  236 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~----------~~~----~~GKP~~~~~~~a~  236 (251)
                      +....+++.+.++|.++ ++||.....+         ..+...++..|-          ...    ..+||+|.+|+.++
T Consensus        37 ~g~~~~L~~L~~~g~~~~i~Tn~~~~~~---------~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~  107 (189)
T 3ib6_A           37 KNAKETLEKVKQLGFKQAILSNTATSDT---------EVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTL  107 (189)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEECCSSCCH---------HHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHH
T ss_pred             cCHHHHHHHHHHCCCEEEEEECCCccch---------HHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHH
Confidence            45577788777889886 6677654211         112233333321          111    46699999999999


Q ss_pred             HhcCCceEE
Q 025564          237 LSSSVIILF  245 (251)
Q Consensus       237 ~~l~~~~~~  245 (251)
                      +++|+++-=
T Consensus       108 ~~~~~~~~~  116 (189)
T 3ib6_A          108 NALQIDKTE  116 (189)
T ss_dssp             HHHTCCGGG
T ss_pred             HHcCCCccc
Confidence            999987643

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=92.06  E-value=0.011  Score=47.60  Aligned_cols=68  Identities=25%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ....++.+.++|.++ ++||.........-...+   +...++.. +.+..-.+||+|.+|+.+++++|++|-
T Consensus        89 ~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~---l~~~fd~~~~~~~~~~~KP~p~~~~~a~~~lg~~p~  158 (216)
T 3kbb_A           89 VREALEFVKSKRIKLALATSTPQREALERLRRLD---LEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPE  158 (216)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTT---CGGGCSEEECGGGSSSCTTSTHHHHHHHHHHTCCGG
T ss_pred             HHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcC---CCccccccccccccCCCcccHHHHHHHHHhhCCCcc
Confidence            355666666788886 566654432110000000   11112211 233445689999999999999999874

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=92.02  E-value=0.011  Score=47.96  Aligned_cols=67  Identities=16%  Similarity=0.002  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      .....++.+.++|.++ ++||.+..  ...  .+..-.+...+... +.+....+||+|.+|+.+++++|+++
T Consensus        99 ~~~~~l~~l~~~g~~~~i~Tn~~~~--~~~--~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  167 (220)
T 2zg6_A           99 DTLEFLEGLKSNGYKLALVSNASPR--VKT--LLEKFDLKKYFDALALSYEIKAVKPNPKIFGFALAKVGYPA  167 (220)
T ss_dssp             THHHHHHHHHTTTCEEEECCSCHHH--HHH--HHHHHTCGGGCSEEC-----------CCHHHHHHHHHCSSE
T ss_pred             CHHHHHHHHHHCCCEEEEEeCCcHH--HHH--HHHhcCcHhHeeEEEeccccCCCCCCHHHHHHHHHHcCCCe
Confidence            4467777767778886 55775431  110  00000011111211 23344579999999999999999999

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}

Probab=91.39  E-value=0.61  Score=34.68  Aligned_cols=76  Identities=9%  Similarity=0.019  Sum_probs=59.0

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc--cceeechhhHHHHHh
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF--AGAITSGELTHQYLL  107 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~--~~Iits~~~~~~~L~  107 (251)
                      .+.+++|+-+|-+-...-+.-..++.+.+++.|.++.++.=+    ..+.+.|+..|+... +  ..++.+-+.+..++.
T Consensus        48 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~~~~~i~~t~~~Al~~~~  122 (130)
T 2kln_A           48 VEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVK----QDLRESLRAASLLDK-IGEDHIFMTLPTAVQAFR  122 (130)
T ss_dssp             CEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCS----SHHHHHHHHCTTHHH-HCTTEEESCHHHHHHHHT
T ss_pred             ceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHHcCChhh-cCcceeECCHHHHHHHHH
Confidence            578999999999999988888899999999999998876532    346788888998643 2  367777777777776


Q ss_pred             ccC
Q 025564          108 RRD  110 (251)
Q Consensus       108 ~~~  110 (251)
                      +++
T Consensus       123 ~~~  125 (130)
T 2kln_A          123 RRH  125 (130)
T ss_dssp             TC-
T ss_pred             hhc
Confidence            554

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=91.27  E-value=0.25  Score=38.34  Aligned_cols=73  Identities=8%  Similarity=-0.025  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCc----hHHHHHHHHhC--CCeE-----------EecCCCHHHH
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMP----GTLASKFEKLG--GEVR-----------WMGKPDKVVQ  232 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~----G~i~~~~~~~g--~~~~-----------~~GKP~~~~~  232 (251)
                      |+....+++.+.++|.++ ++||.......... ....    ..+...++..|  -+..           ..+||+|.+|
T Consensus        29 ~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~KP~~~~~  107 (179)
T 3l8h_A           29 LPGSLQAIARLTQADWTVVLATNQSGLARGLFD-TATLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDGCACRKPLPGMY  107 (179)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSC-HHHHHHHHHHHHHHHHHTTCCCCEEEEECCCTTSCCSSSTTSSHHH
T ss_pred             CcCHHHHHHHHHHCCCEEEEEECCCccccCcCC-HHHHHHHHHHHHHHHHhCCCceeEEEEcCCCCCCCCCCCCCCHHHH
Confidence            345677888888889886 77787642110000 0000    12233444445  2332           3589999999


Q ss_pred             HHHHHhcCCceE
Q 025564          233 LLCSLSSSVIIL  244 (251)
Q Consensus       233 ~~a~~~l~~~~~  244 (251)
                      +.+++++|+++-
T Consensus       108 ~~~~~~~~~~~~  119 (179)
T 3l8h_A          108 RDIARRYDVDLA  119 (179)
T ss_dssp             HHHHHHHTCCCT
T ss_pred             HHHHHHcCCCHH
Confidence            999999998653

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=91.15  E-value=0.071  Score=43.64  Aligned_cols=69  Identities=20%  Similarity=0.252  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCC--eEEecCCCHHHHHHHHHhcCCce
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGE--VRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~--~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ....+++.+.++|.++ ++||.+.......  ......+...+... +.+  ....+||+|.+|+.+++++|+++
T Consensus       116 ~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~--l~~~~~l~~~f~~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~  188 (250)
T 3l5k_A          116 GAEKLIIHLRKHGIPFALATSSRSASFDMK--TSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPP  188 (250)
T ss_dssp             THHHHHHHHHHTTCCEEEECSCCHHHHHHH--TTTCHHHHTTSSCEECTTCTTCCSCTTSTHHHHHHHHTSSSCC
T ss_pred             CHHHHHHHHHhCCCcEEEEeCCCHHHHHHH--HHhccCHHhheeeEEecchhhccCCCCChHHHHHHHHHcCCCC
Confidence            3466777777788886 6677654321110  01122333444432 455  67789999999999999999864

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=90.92  E-value=0.19  Score=45.15  Aligned_cols=44  Identities=11%  Similarity=0.046  Sum_probs=33.5

Q ss_pred             cCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        42 ~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      ..+.+++||+.++++.|+++|++++|+|.+.+.  -+....+++|+
T Consensus       217 ~~gir~~p~~~eLi~~L~~~G~~v~IVSgg~~~--~v~~ia~~lg~  260 (385)
T 4gxt_A          217 FVGIRTLDEMVDLYRSLEENGIDCYIVSASFID--IVRAFATDTNN  260 (385)
T ss_dssp             EECCEECHHHHHHHHHHHHTTCEEEEEEEEEHH--HHHHHHHCTTS
T ss_pred             ccCceeCHHHHHHHHHHHHCCCeEEEEcCCcHH--HHHHHHHHhCc
Confidence            456678999999999999999999999987632  13333455654

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=90.11  E-value=0.32  Score=46.65  Aligned_cols=114  Identities=15%  Similarity=0.124  Sum_probs=68.1

Q ss_pred             CccEEEEeccccc----cCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           29 RFKAWLLDQFGVL----HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        29 ~~~~~l~D~DGvL----~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      ....+.+..||++    ...+++.|++.+++++|+++|++++++|+...  .......+++|++.. +.++...  ....
T Consensus       436 g~~~l~va~~~~~~G~i~~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~--~~a~~ia~~lgi~~~-~~~~~P~--~K~~  510 (645)
T 3j08_A          436 AKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNW--RSAEAISRELNLDLV-IAEVLPH--QKSE  510 (645)
T ss_dssp             TCCCEEEEETTEEEEEEEEECCCTTTHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHHTCSEE-ECSCCTT--CHHH
T ss_pred             CCeEEEEEECCEEEEEEEecCCchhHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCCEE-EEeCCHH--hHHH
Confidence            4566777777665    35678999999999999999999999998763  224455677898865 3444322  2233


Q ss_pred             HHhccCchhhhhcCCeEEEeccCCcccccccCCC--ceecC----CCCCccEEEE
Q 025564          105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLG--LKVVE----NVEEADFILA  153 (251)
Q Consensus       105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g--~~~~~----~~~~~~~Vvv  153 (251)
                      .+++...      ...+..+|.|......++..+  +..-+    ..+.+|+|+.
T Consensus       511 ~v~~l~~------~~~v~~vGDg~ND~~al~~A~vgiamg~g~~~a~~~AD~vl~  559 (645)
T 3j08_A          511 EVKKLQA------KEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLI  559 (645)
T ss_dssp             HHHHHTT------TCCEEEEECSSSCHHHHHHSSEEEEECCCSCCSSCCSSSEES
T ss_pred             HHHHHhh------CCeEEEEeCCHhHHHHHHhCCEEEEeCCCcHHHHHhCCEEEe
Confidence            3333222      134666676543333343333  32211    1245666665

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=89.81  E-value=0.034  Score=50.41  Aligned_cols=67  Identities=12%  Similarity=-0.017  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh--------CCCeEEecCCCHHHHHHHHHhcCCc
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL--------GGEVRWMGKPDKVVQLLCSLSSSVI  242 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~--------g~~~~~~GKP~~~~~~~a~~~l~~~  242 (251)
                      .....+++.+.++|.++ ++||....  ...    ..-.+...+...        ..+.+-.+||+|.+|+.+++++|++
T Consensus       103 ~~~~~~L~~L~~~g~~~~i~Tn~~~~--~~~----~~~~~~~~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~lg~~  176 (555)
T 3i28_A          103 RPMLQAALMLRKKGFTTAILTNTWLD--DRA----ERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKAS  176 (555)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCCCC--CST----THHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHHTCC
T ss_pred             hhHHHHHHHHHHCCCEEEEEeCCCcc--ccc----hhhHHHHHhhhhhhheeEEEeccccCCCCCCHHHHHHHHHHcCCC
Confidence            45567777777889887 67776111  000    011111111111        2223346899999999999999998


Q ss_pred             eE
Q 025564          243 IL  244 (251)
Q Consensus       243 ~~  244 (251)
                      +-
T Consensus       177 p~  178 (555)
T 3i28_A          177 PS  178 (555)
T ss_dssp             GG
T ss_pred             hh
Confidence            64

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=89.74  E-value=0.03  Score=46.35  Aligned_cols=66  Identities=15%  Similarity=0.042  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhCCCcEEEc-cCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          174 LEKILEICASKKIPMVVA-NPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       174 l~~a~~~~~~~g~~li~~-n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ....++.+.++|.++..+ |......     .+..-.+...+... +.+.+-.+||+|.+|+.|++++|++|-
T Consensus       100 ~~~ll~~L~~~g~~i~i~t~~~~~~~-----~l~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~  167 (243)
T 4g9b_A          100 IRSLLADLRAQQISVGLASVSLNAPT-----ILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQ  167 (243)
T ss_dssp             HHHHHHHHHHTTCEEEECCCCTTHHH-----HHHHTTCGGGCSEECCGGGCSSCTTSTHHHHHHHHHHTSCGG
T ss_pred             HHHHHHhhhcccccceecccccchhh-----hhhhhhhccccccccccccccCCCCcHHHHHHHHHHcCCChH
Confidence            355666666788887443 3321100     00000011111221 334456789999999999999999874

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=89.32  E-value=0.13  Score=40.51  Aligned_cols=70  Identities=9%  Similarity=0.022  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCc-hHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMP-GTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~-G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      +.....++.+.++|.++ ++||.+.......   ... -.+...++.. +......+||+|.+|+.+++++|+++-
T Consensus        94 ~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~---~~~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  166 (206)
T 2b0c_A           94 PEVIAIMHKLREQGHRVVVLSNTNRLHTTFW---PEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPS  166 (206)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCCCCTTSCC---GGGCHHHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGG
T ss_pred             ccHHHHHHHHHHCCCeEEEEECCChHHHHHH---HHhccChhhheeeEEEecccCCCCCCHHHHHHHHHHcCCCHH
Confidence            55677787777788885 6677654432211   111 1133333321 222334689999999999999998763

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=89.15  E-value=0.31  Score=47.61  Aligned_cols=99  Identities=15%  Similarity=0.102  Sum_probs=64.0

Q ss_pred             CccEEEEecccccc----CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        29 ~~~~~l~D~DGvL~----~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      ....+.+..||++.    -.+++.|++.+++++|+++|++++++|+.+..  ......+++|++.. +..+ ++.+ ...
T Consensus       533 G~~vl~va~d~~~~G~i~i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~--~a~~ia~~lgi~~v-~a~~-~P~~-K~~  607 (736)
T 3rfu_A          533 GASVMFMAVDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKR--TAEAVAGTLGIKKV-VAEI-MPED-KSR  607 (736)
T ss_dssp             TCEEEEEEETTEEEEEEEEECCBCSSHHHHHHHHHHHTCEEEEECSSCHH--HHHHHHHHHTCCCE-ECSC-CHHH-HHH
T ss_pred             CCeEEEEEECCEEEEEEEeeccchhhHHHHHHHHHHCCCeEEEECCCCHH--HHHHHHHHcCCCEE-EEec-CHHH-HHH
Confidence            46788888888764    46788999999999999999999999986632  23455667898765 3333 2222 223


Q ss_pred             HHhccCchhhhhcCCeEEEeccCCcccccccCC
Q 025564          105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGL  137 (251)
Q Consensus       105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~  137 (251)
                      .+++....     |..+..+|.|......++..
T Consensus       608 ~v~~l~~~-----g~~V~~vGDG~ND~paL~~A  635 (736)
T 3rfu_A          608 IVSELKDK-----GLIVAMAGDGVNDAPALAKA  635 (736)
T ss_dssp             HHHHHHHH-----SCCEEEEECSSTTHHHHHHS
T ss_pred             HHHHHHhc-----CCEEEEEECChHhHHHHHhC
Confidence            33322111     56677778654433344433

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=89.07  E-value=0.041  Score=44.65  Aligned_cols=76  Identities=13%  Similarity=0.007  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceee---CchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEE
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRV---MPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFL  246 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~---~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~  246 (251)
                      +....+++.+.++ .++ ++||.+......-...+   ....+...+... +......+||+|.+|+.+++++|+++-=.
T Consensus       115 ~~~~~~l~~l~~~-~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~g~~~~~~  193 (229)
T 4dcc_A          115 TYKLDLLLKLREK-YVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEPEIFKAVTEDAGIDPKET  193 (229)
T ss_dssp             HHHHHHHHHHTTT-SEEEEEECCCHHHHHHHHHHTSCBTTBCHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             HHHHHHHHHHHhc-CcEEEEECCChHHHHHHHhhhhhhccCCHHHhCCEEEeecccCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            4556777765555 664 67777665432100011   222233333332 33344578999999999999999876433


Q ss_pred             Ee
Q 025564          247 IF  248 (251)
Q Consensus       247 ~~  248 (251)
                      ++
T Consensus       194 ~~  195 (229)
T 4dcc_A          194 FF  195 (229)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=89.05  E-value=0.22  Score=43.81  Aligned_cols=53  Identities=15%  Similarity=0.275  Sum_probs=38.0

Q ss_pred             CCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhH-h--CCCCCccccceeechh
Q 025564           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK-S--LGFDPSLFAGAITSGE  100 (251)
Q Consensus        44 g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~-~--~Gl~~~~~~~Iits~~  100 (251)
                      +...+|++.++++.|+++|++++|+|.+..   .+.+-+. .  .|+.+.+ ++|+.+..
T Consensus       141 ~~~~~~~~~~l~~~l~~~G~~v~ivSas~~---~~v~~~a~~~~~~ygIp~-e~ViG~~~  196 (327)
T 4as2_A          141 PPRVFSGQRELYNKLMENGIEVYVISAAHE---ELVRMVAADPRYGYNAKP-ENVIGVTT  196 (327)
T ss_dssp             CCEECHHHHHHHHHHHHTTCEEEEEEEEEH---HHHHHHHTCGGGSCCCCG-GGEEEECE
T ss_pred             ccccCHHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHhhcccccCCCH-HHeEeeee
Confidence            346899999999999999999999997653   2333332 2  3555554 78887653

>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}

Probab=88.68  E-value=0.98  Score=34.04  Aligned_cols=74  Identities=11%  Similarity=-0.051  Sum_probs=56.5

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc---cceeechhhHHHH
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF---AGAITSGELTHQY  105 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~---~~Iits~~~~~~~  105 (251)
                      ..+.+++|+-+|-+-...-+--..++.+.++++|.++.++.=    ...+.+.|+..|+... +   ..++.+-+.+..+
T Consensus        63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~----~~~v~~~l~~~gl~~~-~~~~~~if~s~~~Al~~  137 (143)
T 3llo_A           63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGC----SAQVVNDLTSNRFFEN-PALKELLFHSIHDAVLG  137 (143)
T ss_dssp             CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESC----CHHHHHHHHHTTTTSS-GGGGGGEESSHHHHHHH
T ss_pred             CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHhCCCeec-cCccceEECcHHHHHHH
Confidence            467899999999988887777778888999999999888642    2346788999999864 2   3677776666655


Q ss_pred             Hh
Q 025564          106 LL  107 (251)
Q Consensus       106 L~  107 (251)
                      +.
T Consensus       138 ~~  139 (143)
T 3llo_A          138 SQ  139 (143)
T ss_dssp             TS
T ss_pred             HH
Confidence            43

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=87.97  E-value=0.13  Score=41.43  Aligned_cols=65  Identities=8%  Similarity=0.012  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      |.....+++.+.++|.++ |+||........   ..+     ..+... +.+....+||+|.+|..+++++++.+
T Consensus        38 ~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~---~~~-----~~~d~v~~~~~~~~~KP~p~~~~~a~~~l~~~~  104 (196)
T 2oda_A           38 TPGAQNALKALRDQGMPCAWIDELPEALSTP---LAA-----PVNDWMIAAPRPTAGWPQPDACWMALMALNVSQ  104 (196)
T ss_dssp             CTTHHHHHHHHHHHTCCEEEECCSCHHHHHH---HHT-----TTTTTCEECCCCSSCTTSTHHHHHHHHHTTCSC
T ss_pred             CcCHHHHHHHHHHCCCEEEEEcCChHHHHHH---hcC-----ccCCEEEECCcCCCCCCChHHHHHHHHHcCCCC
Confidence            355677787777778886 556543321100   000     011221 33445579999999999999999854

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=87.58  E-value=0.052  Score=45.02  Aligned_cols=68  Identities=15%  Similarity=0.134  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .+...++.+.++|.++..++.......    .+..-.+...+... +.+..-.+||+|.+|+.+++++|++|-
T Consensus       120 ~~~~ll~~Lk~~g~~i~i~~~~~~~~~----~L~~~gl~~~Fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~  188 (250)
T 4gib_A          120 GIESLLIDVKSNNIKIGLSSASKNAIN----VLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQ  188 (250)
T ss_dssp             THHHHHHHHHHTTCEEEECCSCTTHHH----HHHHHTCGGGCSEECCGGGCCSCTTSSHHHHHHHHHHTCCGG
T ss_pred             hHHHHHHHHHhcccccccccccchhhh----HhhhcccccccceeecccccCCCCCcHHHHHHHHHHhCCChH
Confidence            346666666778888765543211000    00000011111211 334456789999999999999999873

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=86.96  E-value=0.11  Score=42.35  Aligned_cols=67  Identities=16%  Similarity=0.148  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHH--HHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF--EKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~--~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ....++.+.++|.++ +++|.+.......   +.. .+...+  +.. +.+....|||+|.+|+.+++++|+++-
T Consensus       114 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~---l~~-~l~~~f~~d~i~~~~~~~~~kp~~~~~~~~~~~lg~~~~  184 (243)
T 3qxg_A          114 AWELLQKVKSEGLTPMVVTGSGQLSLLER---LEH-NFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKAD  184 (243)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCCCHHHHTT---HHH-HSTTTCCGGGEECTTTCSSCTTSSHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHcCCcEEEEeCCcHHHHHHH---HHH-hHHHhcCcceEEeHHhCCCCCCChHHHHHHHHHcCCCHH
Confidence            355666666788876 5666654322211   111 222333  332 444556899999999999999998764

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=85.31  E-value=0.095  Score=42.39  Aligned_cols=68  Identities=15%  Similarity=0.101  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHH--HHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF--EKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~--~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .....++.+.++|.++ ++||.+......   .+.. .+...+  +.. +.+....|||+|.+|+.+++++|+++-
T Consensus       112 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~---~l~~-~l~~~f~~~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~  183 (247)
T 3dv9_A          112 GALEVLTKIKSEGLTPMVVTGSGQTSLLD---RLNH-NFPGIFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPN  183 (247)
T ss_dssp             THHHHHHHHHHTTCEEEEECSCC---CHH---HHHH-HSTTTCCGGGEECGGGCSSCTTSSHHHHHHHHHHTCCGG
T ss_pred             CHHHHHHHHHHcCCcEEEEcCCchHHHHH---HHHh-hHHHhcCCCeEEecccCCCCCCCCHHHHHHHHHcCCChh
Confidence            3456666666788876 556655332111   1111 122223  221 334456799999999999999998764

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*

Probab=85.15  E-value=0.91  Score=33.69  Aligned_cols=74  Identities=14%  Similarity=-0.001  Sum_probs=55.0

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccc--cceeechhhHHHHH
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF--AGAITSGELTHQYL  106 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~--~~Iits~~~~~~~L  106 (251)
                      ..+.+++|+-+|-+-...-+--..++.+.++++|.++.++.=    ...+.+.|+..|+... +  +.++.+-+.+..++
T Consensus        48 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~----~~~v~~~l~~~gl~~~-~~~~~i~~s~~~Al~~~  122 (130)
T 4dgh_A           48 TPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGA----NSRVSQKLVKAGIVKL-VGEQNVYPVFEGALSAA  122 (130)
T ss_dssp             CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECC----CHHHHHHHHHTTHHHH-HCGGGEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHcCChhh-cCcccccCCHHHHHHHH
Confidence            568999999999988877777778888999999999887752    2346678888888643 2  25666666665554


Q ss_pred             h
Q 025564          107 L  107 (251)
Q Consensus       107 ~  107 (251)
                      .
T Consensus       123 ~  123 (130)
T 4dgh_A          123 L  123 (130)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=85.09  E-value=0.052  Score=43.68  Aligned_cols=69  Identities=12%  Similarity=0.120  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ....+++.+.++|.++ ++||.+.......-...+   +...+... +.+....+||+|.+|+.+++++|+++-
T Consensus       103 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~---l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~  173 (233)
T 3umb_A          103 ENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAG---MSGLFDHVLSVDAVRLYKTAPAAYALAPRAFGVPAA  173 (233)
T ss_dssp             THHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTT---CTTTCSEEEEGGGTTCCTTSHHHHTHHHHHHTSCGG
T ss_pred             CHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCC---cHhhcCEEEEecccCCCCcCHHHHHHHHHHhCCCcc
Confidence            4466777766778876 566765432110000000   00111111 223345689999999999999998764

>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*

Probab=84.80  E-value=2.2  Score=31.59  Aligned_cols=85  Identities=13%  Similarity=-0.006  Sum_probs=60.0

Q ss_pred             CChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeec
Q 025564           19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS   98 (251)
Q Consensus        19 ~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits   98 (251)
                      +.+.+.+...+.+.+++|+-||=+-.....-......+.++..|.+++++.-    +.++.+.|..+|++... -.++.+
T Consensus        32 ~~ll~~i~~~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi----~p~va~~l~~~G~~l~~-i~~~~~  106 (123)
T 3zxn_A           32 EELLHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGI----KPAVAITLTEMGLDLRG-MATALN  106 (123)
T ss_dssp             HHHHHHHTSSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECC----CHHHHHHHHHTTCCSTT-SEEESS
T ss_pred             HHHHHHHHhcCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHhCCCccc-eEEECC
Confidence            3444555433678999999999887776666667778888889999876653    23577889999998432 356666


Q ss_pred             hhhHHHHHhc
Q 025564           99 GELTHQYLLR  108 (251)
Q Consensus        99 ~~~~~~~L~~  108 (251)
                      -+.+..++.+
T Consensus       107 l~~Al~~l~~  116 (123)
T 3zxn_A          107 LQKGLDKLKN  116 (123)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=83.60  E-value=0.1  Score=42.13  Aligned_cols=69  Identities=20%  Similarity=0.075  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .....++.+.++|.++ ++||.+.......-...+   +...+... +.+....+||+|.+|+.+++++|+++-
T Consensus        87 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~g---l~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  157 (222)
T 2nyv_A           87 EIPYTLEALKSKGFKLAVVSNKLEELSKKILDILN---LSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPE  157 (222)
T ss_dssp             THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTT---CGGGCSEEECTTSSCTTCCTTHHHHHHHHHHTCCGG
T ss_pred             CHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC---CHHHheEEEecCcCCCCCCChHHHHHHHHHhCCCch
Confidence            3466677666788886 667754432110000000   00111111 223344689999999999999998753

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=83.53  E-value=0.99  Score=40.48  Aligned_cols=30  Identities=23%  Similarity=0.220  Sum_probs=23.9

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHHHH
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLA   59 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~   59 (251)
                      +|.++||+|||+....+.++-+.=++..|-
T Consensus         1 ~~~~~fdvdgv~~~~~~~~d~~~ltv~~~l   30 (384)
T 1qyi_A            1 MKKILFDVDGVFLSEERCFDVSALTVYELL   30 (384)
T ss_dssp             CCEEEECSBTTTBCSHHHHHHHHHHHHHHH
T ss_pred             CceEEEecCceeechhhhccHHHHHHHHHH
Confidence            478999999999998888877665565553

>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A

Probab=83.30  E-value=2.1  Score=30.71  Aligned_cols=69  Identities=7%  Similarity=0.065  Sum_probs=51.1

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      ..+.+++|+.+|=+-+..-+--...+.+.++++|.++.++.=    ++.+.+.|+..|+... +  ++.+.+.+..
T Consensus        41 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~----~~~v~~~l~~~gl~~~-~--i~~~~~~Al~  109 (117)
T 1h4x_A           41 AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNP----SPTMRKVFQFSGLGPW-M--MDATEEEAID  109 (117)
T ss_dssp             SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESC----CHHHHHHHHHTTCGGG-E--ECSCHHHHHH
T ss_pred             CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHhCCceE-E--EeCCHHHHHH
Confidence            467899999999988887666667788888999999887642    2346788888999875 5  5555444443

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=83.15  E-value=3.3  Score=31.19  Aligned_cols=58  Identities=14%  Similarity=0.051  Sum_probs=37.2

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCC-eEEecCCCHHHHHHHHHhcCCce
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGE-VRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~-~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ...+++.+.++|.++ ++||....            .+...++..|-. ....+||.|.+|+.+++++++++
T Consensus        41 ~~~~l~~l~~~g~~~~i~T~~~~~------------~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~~~~~~  100 (162)
T 2p9j_A           41 DGIGIKLLQKMGITLAVISGRDSA------------PLITRLKELGVEEIYTGSYKKLEIYEKIKEKYSLKD  100 (162)
T ss_dssp             HHHHHHHHHTTTCEEEEEESCCCH------------HHHHHHHHTTCCEEEECC--CHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCcH------------HHHHHHHHcCCHhhccCCCCCHHHHHHHHHHcCCCH
Confidence            356777777788886 55664432            122344555543 34558999999999999999875

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=82.63  E-value=0.079  Score=44.12  Aligned_cols=59  Identities=20%  Similarity=0.217  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhC----------CCeEEecCCCHHHHHHHHHhcCC
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLG----------GEVRWMGKPDKVVQLLCSLSSSV  241 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g----------~~~~~~GKP~~~~~~~a~~~l~~  241 (251)
                      ....+++.+.++|.++ ++||.+...             ...++..|          ......+||+|.+|+.+++++|+
T Consensus       110 ~~~~~l~~l~~~g~~~~i~tn~~~~~-------------~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~g~  176 (263)
T 3k1z_A          110 GAEDTLRECRTRGLRLAVISNFDRRL-------------EGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLAHM  176 (263)
T ss_dssp             THHHHHHHHHHTTCEEEEEESCCTTH-------------HHHHHHTTCGGGCSCEEEHHHHSSCTTSHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCCcEEEEeCCcHHH-------------HHHHHhCCcHHhhhEEEeecccCCCCCCHHHHHHHHHHcCC
Confidence            4466777777788886 667754321             12233222          12234699999999999999998


Q ss_pred             ceE
Q 025564          242 IIL  244 (251)
Q Consensus       242 ~~~  244 (251)
                      ++-
T Consensus       177 ~~~  179 (263)
T 3k1z_A          177 EPV  179 (263)
T ss_dssp             CGG
T ss_pred             CHH
Confidence            763

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=81.95  E-value=1.1  Score=36.02  Aligned_cols=72  Identities=10%  Similarity=-0.016  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCc-eeeC--chHHHHHHHHhCCC--------------------eEEecCC
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARA-LRVM--PGTLASKFEKLGGE--------------------VRWMGKP  227 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~-~~~~--~G~i~~~~~~~g~~--------------------~~~~GKP  227 (251)
                      +....+++.+.++|.++ ++||.....+.-.. ..+-  ...+...++..|-.                    ....|||
T Consensus        53 pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~f~~~~~~~~~~~~~~~~~~~~~~~~KP  132 (211)
T 2gmw_A           53 DGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKP  132 (211)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECCBTTCSSGGGBSCCSSSTT
T ss_pred             cCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCceEEEEECCcCCCCcccccCccCcCCCC
Confidence            45677788777888886 66776642110000 0000  11222334433321                    1235899


Q ss_pred             CHHHHHHHHHhcCCce
Q 025564          228 DKVVQLLCSLSSSVII  243 (251)
Q Consensus       228 ~~~~~~~a~~~l~~~~  243 (251)
                      +|.+|+.+++++++++
T Consensus       133 ~p~~~~~~~~~lgi~~  148 (211)
T 2gmw_A          133 HPGMLLSARDYLHIDM  148 (211)
T ss_dssp             SCHHHHHHHHHHTBCG
T ss_pred             CHHHHHHHHHHcCCCH
Confidence            9999999999999865

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=81.42  E-value=1.3  Score=43.10  Aligned_cols=98  Identities=13%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             CccEEEEecccccc----CCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHH
Q 025564           29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (251)
Q Consensus        29 ~~~~~l~D~DGvL~----~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~  104 (251)
                      ....+.+..||++.    -.+++.|++.+++++|+++|+++.++|+....  ......+++|++.. +.++...+  ...
T Consensus       514 g~~~~~va~~~~~~G~i~i~D~~~~~~~~~i~~l~~~Gi~v~~~TGd~~~--~a~~ia~~lgi~~~-~~~~~P~~--K~~  588 (723)
T 3j09_A          514 AKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWR--SAEAISRELNLDLV-IAEVLPHQ--KSE  588 (723)
T ss_dssp             TCEEEEEEETTEEEEEEEEECCSCTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHHTCSEE-ECSCCTTC--HHH
T ss_pred             CCeEEEEEECCEEEEEEeecCCcchhHHHHHHHHHHCCCEEEEECCCCHH--HHHHHHHHcCCcEE-EccCCHHH--HHH
Confidence            45677777776654    56789999999999999999999999987632  24455667898765 34443222  233


Q ss_pred             HHhccCchhhhhcCCeEEEeccCCcccccccCC
Q 025564          105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGL  137 (251)
Q Consensus       105 ~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~  137 (251)
                      .+++...      ...+..+|.|......++..
T Consensus       589 ~v~~l~~------~~~v~~vGDg~ND~~al~~A  615 (723)
T 3j09_A          589 EVKKLQA------KEVVAFVGDGINDAPALAQA  615 (723)
T ss_dssp             HHHHHTT------TCCEEEEECSSTTHHHHHHS
T ss_pred             HHHHHhc------CCeEEEEECChhhHHHHhhC
Confidence            3333221      13466667654333334333

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=81.25  E-value=0.12  Score=41.63  Aligned_cols=58  Identities=12%  Similarity=0.094  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh----------CCCeEEecCCCHHHHHHHHHhcCCc
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL----------GGEVRWMGKPDKVVQLLCSLSSSVI  242 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~----------g~~~~~~GKP~~~~~~~a~~~l~~~  242 (251)
                      ....++.+.++|.++ ++||......            ...++..          +.+....+||+|.+|+.+++++|++
T Consensus       100 ~~~~l~~l~~~g~~~~i~t~~~~~~~------------~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  167 (232)
T 1zrn_A          100 VPDSLRELKRRGLKLAILSNGSPQSI------------DAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLD  167 (232)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSCHHHH------------HHHHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCHHHH------------HHHHHhcChHhhhheEEEecccCCCCCCHHHHHHHHHHcCCC
Confidence            356666666788876 5566543321            1222222          1222346899999999999999987


Q ss_pred             e
Q 025564          243 I  243 (251)
Q Consensus       243 ~  243 (251)
                      +
T Consensus       168 ~  168 (232)
T 1zrn_A          168 R  168 (232)
T ss_dssp             G
T ss_pred             c
Confidence            5

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=80.97  E-value=0.11  Score=41.50  Aligned_cols=60  Identities=12%  Similarity=0.045  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh----------CCCeEEecCCCHHHHHHHHHhcCC
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL----------GGEVRWMGKPDKVVQLLCSLSSSV  241 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~----------g~~~~~~GKP~~~~~~~a~~~l~~  241 (251)
                      ....+++.+.++|.++ ++||.+....            ...++..          +.+....+||+|.+|+.+++++|+
T Consensus       100 ~~~~~l~~l~~~g~~~~i~s~~~~~~~------------~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~  167 (230)
T 3um9_A          100 DVPQALQQLRAAGLKTAILSNGSRHSI------------RQVVGNSGLTNSFDHLISVDEVRLFKPHQKVYELAMDTLHL  167 (230)
T ss_dssp             THHHHHHHHHHTTCEEEEEESSCHHHH------------HHHHHHHTCGGGCSEEEEGGGTTCCTTCHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCCeEEEEeCCCHHHH------------HHHHHHCCChhhcceeEehhhcccCCCChHHHHHHHHHhCC
Confidence            4466677767788876 5666553211            1222222          122334689999999999999998


Q ss_pred             ceE
Q 025564          242 IIL  244 (251)
Q Consensus       242 ~~~  244 (251)
                      ++-
T Consensus       168 ~~~  170 (230)
T 3um9_A          168 GES  170 (230)
T ss_dssp             CGG
T ss_pred             Ccc
Confidence            763

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=80.64  E-value=0.14  Score=42.67  Aligned_cols=69  Identities=17%  Similarity=0.155  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      +.....++.+.+ +.++ ++||.+.......-...+-.   ..+... +......+||+|.+|+.+++++|++|-
T Consensus       124 ~g~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l~~~gl~---~~f~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~  194 (260)
T 2gfh_A          124 DDVKAMLTELRK-EVRLLLLTNGDRQTQREKIEACACQ---SYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPG  194 (260)
T ss_dssp             HHHHHHHHHHHT-TSEEEEEECSCHHHHHHHHHHHTCG---GGCSEEEEGGGSSSCTTCHHHHHHHHHHHTCCGG
T ss_pred             cCHHHHHHHHHc-CCcEEEEECcChHHHHHHHHhcCHH---hhhheEEecCCCCCCCCCHHHHHHHHHHcCCChh
Confidence            556677776544 5665 77887654321100000100   011110 112223589999999999999998753

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=80.56  E-value=0.1  Score=40.92  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh----------CCCeEEecCCCHHHHHHHHHhcCC
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL----------GGEVRWMGKPDKVVQLLCSLSSSV  241 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~----------g~~~~~~GKP~~~~~~~a~~~l~~  241 (251)
                      .....++.+.++|.++ ++||.+....            ...++..          +.+....+||+|.+|+.+++++|+
T Consensus        93 ~~~~~l~~l~~~g~~~~i~s~~~~~~~------------~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~  160 (214)
T 3e58_A           93 DVLKVLNEVKSQGLEIGLASSSVKADI------------FRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNV  160 (214)
T ss_dssp             THHHHHHHHHHTTCEEEEEESSCHHHH------------HHHHHHTTCGGGCSEEEEGGGCSSCTTSSHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHCCCCEEEEeCCcHHHH------------HHHHHHcCcHhheeeEeecccccCCCCChHHHHHHHHHcCC
Confidence            3466777767778876 5566543221            1122221          223345689999999999999998


Q ss_pred             ce
Q 025564          242 II  243 (251)
Q Consensus       242 ~~  243 (251)
                      ++
T Consensus       161 ~~  162 (214)
T 3e58_A          161 QA  162 (214)
T ss_dssp             CG
T ss_pred             Ch
Confidence            76

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=80.10  E-value=0.096  Score=41.17  Aligned_cols=60  Identities=13%  Similarity=0.055  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhC----------CCeEEecCCCHHHHHHHHHhc
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLG----------GEVRWMGKPDKVVQLLCSLSS  239 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g----------~~~~~~GKP~~~~~~~a~~~l  239 (251)
                      ++.+...++.+.++| ++ ++||.+.....            ..++..|          ......+||+|.+|+.+++++
T Consensus        88 ~~~~~~~l~~l~~~g-~~~i~s~~~~~~~~------------~~l~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~  154 (200)
T 3cnh_A           88 RPEVLALARDLGQRY-RMYSLNNEGRDLNE------------YRIRTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTLA  154 (200)
T ss_dssp             CHHHHHHHHHHTTTS-EEEEEECCCHHHHH------------HHHHHHTGGGTCSCEEEHHHHSCCTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHcC-CEEEEeCCcHHHHH------------HHHHhCCHHHhcceEEeecccCCCCCCHHHHHHHHHHc
Confidence            356677887766778 65 66776543211            1222211          112346899999999999999


Q ss_pred             CCce
Q 025564          240 SVII  243 (251)
Q Consensus       240 ~~~~  243 (251)
                      |+++
T Consensus       155 ~~~~  158 (200)
T 3cnh_A          155 QVRP  158 (200)
T ss_dssp             TCCG
T ss_pred             CCCH
Confidence            9875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1yv9a1	253	c.108.1.14 (A:4-256) Putative hydrolase EF1188 {En	6e-13
d1vjra_	261	c.108.1.14 (A:) Hypothetical protein TM1742 {Therm	2e-12
d1wvia_	253	c.108.1.14 (A:) Putative phosphatase SMU.1415c {St	2e-12
d2c4na1	250	c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId	1e-09

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.3 bits (155), Expect = 6e-13
 Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 30  FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFD 88
           ++ +L+D  G ++ GK+P P     +E L       + ++N +++   T   +L +    
Sbjct: 2   YQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDI 61

Query: 89  PSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTW 126
               +   T+   T  Y+   +      +      +  
Sbjct: 62  HVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDL 99

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]} Length = 261

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.2 bits (152), Expect = 2e-12
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 20/196 (10%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88
           + + ++LD  G  +      PG++  LE L     + V  +N+S   +    +       
Sbjct: 6   KIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGV 65

Query: 89  PSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEA 148
                  +TSGE+T +++L+R        GR  I +  + +     E  G  + E  E  
Sbjct: 66  DVPDDAVVTSGEITAEHMLKR-------FGRCRIFLLGTPQLKKVFEAYGHVIDE--ENP 116

Query: 149 DFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPG 208
           DF++    + +            +  +  + +   K    +  +PD             G
Sbjct: 117 DFVVLGFDKTL---------TYERLKKACILLRKGK--FYIATHPDINCPSKEGPVPDAG 165

Query: 209 TLASKFEKLGGEVRWM 224
           ++ +  E   G    +
Sbjct: 166 SIMAAIEASTGRKPDL 181

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 15/123 (12%), Positives = 39/123 (31%), Gaps = 8/123 (6%)

Query: 30  FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFD 88
           +K +L+D  G ++ GK   P     ++ L       ++++N ++R      + L +    
Sbjct: 2   YKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNI 61

Query: 89  PSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEA 148
            +      T+   T  Y+                ++        ++   G +        
Sbjct: 62  KTPLETIYTATLATIDYMNDMKRGK-------TAYVIGETGLKKAVAEAGYREDSENPAY 114

Query: 149 DFI 151
             +
Sbjct: 115 VVV 117

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]} Length = 250

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 18/98 (18%), Positives = 33/98 (33%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88
             K  + D  GVL       PGA   L  +   G  +V+++N   +    +    +    
Sbjct: 2   TIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV 61

Query: 89  PSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTW 126
               +   TS   T  +L R++      +G   +    
Sbjct: 62  DVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHEL 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	99.96
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	99.95
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	99.95
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	99.95
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	99.22
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	98.93
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	98.87
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	98.86
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	98.82
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	98.69
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	98.64
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	98.59
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	98.59
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	98.58
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	98.51
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	98.48
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	98.4
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	98.38
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	98.33
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	98.31
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	98.3
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	98.3
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	98.28
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	98.28
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	98.23
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	98.22
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	98.21
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	98.2
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	98.16
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	98.12
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	98.11
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	98.1
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	98.09
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	98.03
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	97.97
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	97.92
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	97.9
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	97.89
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	97.88
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	97.77
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	97.74
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	97.69
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	97.66
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	97.62
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	97.51
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	97.35
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	97.3
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	97.3
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	97.22
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	96.99
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	96.49
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	96.05
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	95.69
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	95.5
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	95.47
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	94.83
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	94.62
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	94.4
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	93.02
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	92.95
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	92.51
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	92.4
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	91.49
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	89.44
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	88.98
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	88.41
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	87.97
d1th8b_	115	Anti-sigma factor antagonist SpoIIaa {Bacillus ste	87.63
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	87.07
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	86.4
d1h4xa_	111	Anti-sigma factor antagonist SpoIIaa {Bacillus sph	85.51
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	84.88
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	83.99
d1vc1a_	110	Anti-sigma factor antagonist SpoIIaa {Thermotoga m	82.86
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	82.42
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	81.04

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=99.96  E-value=8.9e-29  Score=210.96  Aligned_cols=197  Identities=17%  Similarity=0.232  Sum_probs=164.1

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHh-CCCCCccccceeechhhHHHHH
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKS-LGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~-~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      .||+|+||+|||||++..++|+|.++|+.|++.|++++|+|||++ +.+++.++|+. +|+... .++|+++..++..|+
T Consensus         1 tyk~vlFDlDGTL~~~~~~i~~a~e~l~~l~~~g~~~~~~TN~s~~~~~~~~~~l~~~~~~~~~-~~~i~~~~~~~~~~l   79 (253)
T d1wvia_           1 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTP-LETIYTATLATIDYM   79 (253)
T ss_dssp             CCCEEEEECBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHHHHSCCCC-GGGEEEHHHHHHHHH
T ss_pred             CcCEEEEcCcCceEECCCcCccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHhhcCcccc-ccccccHHHHHHHHH
Confidence            489999999999999999999999999999999999999999984 55677788854 788877 489999999999999


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccc-cccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCC
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAI-SLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKK  185 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~-~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g  185 (251)
                      +....      +.++++++.  .++. ++.+.+....  .+.++.+++          +.+..++|.+...+.. +.+.+
T Consensus        80 ~~~~~------~~~~~~~~~--~~l~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~  138 (253)
T d1wvia_          80 NDMKR------GKTAYVIGE--TGLKKAVAEAGYRED--SENPAYVVV----------GLDTNLTYEKLTLATL-AIQKG  138 (253)
T ss_dssp             HHHCC------CSEEEEESC--HHHHHHHHHTTCEEC--SSSCSEEEE----------CCCTTCBHHHHHHHHH-HHHTT
T ss_pred             HHhcc------Cceeeeccc--hHHHHHHHHcCCccc--ccccceEEE----------ecCCCcCHHHHHHHhh-hhhhc
Confidence            87665      467776553  2222 4555665443  356777777          6788899998888876 46778


Q ss_pred             CcEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564          186 IPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI  247 (251)
Q Consensus       186 ~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~  247 (251)
                      .++|+||+|..++...+...++|.+..+++.. ++++..+|||+|.+|+.|++++|++|  ++||
T Consensus       139 ~~~i~tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gKP~p~~~~~al~~l~i~~~~~~mI  203 (253)
T d1wvia_         139 AVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMV  203 (253)
T ss_dssp             CEEEESCCCSEEEETTEEEECHHHHHHHHHHHHCCCCEECSTTSHHHHHHHHHHHTSCGGGEEEE
T ss_pred             cccccCCCCceeEcCCcccccCCcchhcccccccceeEEeccCCcccceehhhhccccccceEEE
Confidence            89999999999999888889999999999974 99999999999999999999999874  4665

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.1e-27  Score=204.26  Aligned_cols=203  Identities=22%  Similarity=0.297  Sum_probs=168.2

Q ss_pred             HHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhh
Q 025564           23 HIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        23 ~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .+++  +||+|+||+|||||++.+++|+|.++|++|+++|++++|+||++ ++..++.++++.+|++... ++|+||++.
T Consensus         2 ~~~~--~ik~vlFDlDGTL~~~~~~i~~a~e~l~~l~~~g~~~~~~TN~~~~~~~~~~~~~~~~g~~~~~-~~v~ts~~~   78 (261)
T d1vjra_           2 HVLD--KIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPD-DAVVTSGEI   78 (261)
T ss_dssp             CGGG--GCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCCCCG-GGEEEHHHH
T ss_pred             chHH--hCCEEEEeCCCeeEECCccCchHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhhcccccc-ceeccHHHH
Confidence            4677  99999999999999999999999999999999999999999987 5667788999999999885 899999999


Q ss_pred             HHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHH
Q 025564          102 THQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEIC  181 (251)
Q Consensus       102 ~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~  181 (251)
                      ...++.+...      +.++++.+.... ..++.+.+....+  .+...+++          |.+..++|.....++. +
T Consensus        79 ~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~-~  138 (261)
T d1vjra_          79 TAEHMLKRFG------RCRIFLLGTPQL-KKVFEAYGHVIDE--ENPDFVVL----------GFDKTLTYERLKKACI-L  138 (261)
T ss_dssp             HHHHHHHHHC------SCEEEEESCHHH-HHHHHHTTCEECS--SSCSEEEE----------CCCTTCCHHHHHHHHH-H
T ss_pred             HHHHHHHhcC------CceEEEecccch-hHHHHhcCcccch--hhcceeEe----------cCCcccchHHHHHHHH-H
Confidence            9999976543      356776553211 2256666665543  55566777          6788899988888876 4


Q ss_pred             HhCCCcEEEccCCccccccCceeeCchHHHHHHHHh-CCCe-EEecCCCHHHHHHHHHhcCCce--EEEEe
Q 025564          182 ASKKIPMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEV-RWMGKPDKVVQLLCSLSSSVII--LFLIF  248 (251)
Q Consensus       182 ~~~g~~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~-~~~GKP~~~~~~~a~~~l~~~~--~~~~~  248 (251)
                      ..++.+++++|+|..++...+...+.|++...+... |+++ ...|||+|.+|+.+++++|+++  ++||-
T Consensus       139 ~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~lmVG  209 (261)
T d1vjra_         139 LRKGKFYIATHPDINCPSKEGPVPDAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERMAMVG  209 (261)
T ss_dssp             HTTTCEEEESCCCSEECCTTSCEECHHHHHHHHHHHHSCCCSEECSTTSTHHHHHHHHHHTCCGGGEEEEE
T ss_pred             hhcCcceecccCCccccCCCCcccccchhhHHHhhhcccccccccCCCcHHHHHHHHhhhccCchhcceec
Confidence            678899999999999999888889999999988874 7765 6789999999999999999887  67763

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.95  E-value=3e-27  Score=201.08  Aligned_cols=198  Identities=17%  Similarity=0.243  Sum_probs=162.1

Q ss_pred             CccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhH-hCCCCCccccceeechhhHHHHH
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLK-SLGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~-~~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      +||+|+||+|||||++.+++|+|.++|++|++.|++++++||++ ++.+++.++|. .+|+.... +.|+++..+...|+
T Consensus         1 ~yk~v~fDlDGTL~~~~~~i~~a~~~i~~l~~~g~~~~~~Tn~s~~~~~~~~~~L~~~~~~~~~~-~~i~~~~~~~~~~l   79 (253)
T d1yv9a1           1 DYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPA-SLVYTATLATIDYM   79 (253)
T ss_dssp             SCCEEEECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCCCG-GGEEEHHHHHHHHH
T ss_pred             CCCEEEEcCCCccEeCCCcCccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHHhcCCcccc-ccccCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999988 56677777775 47888874 89999999999999


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCC
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKI  186 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~  186 (251)
                      ++...      ...++..+.... ..+....+.....  .++++++.          +.+..++|.++..+... ...+.
T Consensus        80 ~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~  139 (253)
T d1yv9a1          80 KEANR------GKKVFVIGEAGL-IDLILEAGFEWDE--TNPDYVVV----------GLDTELSYEKVVLATLA-IQKGA  139 (253)
T ss_dssp             HHHCC------CSEEEEESCHHH-HHHHHHTTCEECS--SSCSEEEE----------CCCTTCCHHHHHHHHHH-HHTTC
T ss_pred             HhccC------CCeEEecccchh-hhhhhhhcccccc--cCcceEEE----------eccCcccHHHhhhhhhh-hcccc
Confidence            87654      356666543211 1233334444432  56778877          67889999999888875 67788


Q ss_pred             cEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564          187 PMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI  247 (251)
Q Consensus       187 ~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~  247 (251)
                      .++++|+|..++...+...++|++...++.. +.++..+|||+|.+|+.+++++|++|  ++||
T Consensus       140 ~~i~~n~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~gi~~~~~l~I  203 (253)
T d1yv9a1         140 LFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMV  203 (253)
T ss_dssp             EEEESCCCSEEEETTEEEECHHHHHHHHHHHHTCCCEECSTTSHHHHHHHHHHHCSCGGGEEEE
T ss_pred             ceeeecCCccccccCceeeecccccccccccccceeeeecccchhHHHHHHHHhCCCccceEEe
Confidence            9999999999999888888999999999985 99999999999999999999999874  5555

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.4e-26  Score=196.79  Aligned_cols=195  Identities=20%  Similarity=0.295  Sum_probs=159.5

Q ss_pred             cCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCC-CCchhHHHHhHhCCCCCccccceeechhhHHHHH
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s-~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      |++|+|+||+|||||++.+++|++.++|++|+++|++++|+||++ ++++++.++|+++|++... ++|+++...+..++
T Consensus         1 M~ik~VifDlDGTL~~~~~~i~~a~e~i~~l~~~g~~~~~~TN~~~~~~~~~~~~l~~~G~~~~~-~~i~~~~~~~~~~l   79 (250)
T d2c4na1           1 MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFL   79 (250)
T ss_dssp             CCCCEEEEECBTTTEETTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCCCCG-GGEEEHHHHHHHHH
T ss_pred             CCCCEEEEECCCeeEECCCcCccHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHhhccccccc-eeEechHHHHHHHH
Confidence            789999999999999999999999999999999999999999998 4667889999999999884 89999999999999


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccccccCCCceecCCCCCccEEEEecCCCCCCCCCCCccCCHHHHHHHHHHHHhCCC
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKI  186 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~~~~~~~~~~Vvv~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~~g~  186 (251)
                      ++..       ++++|+++.... ..++........+  ..+...++          |.+..++|.....+... +.++.
T Consensus        80 ~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~v~----------~~~~~~~~~~~~~~~~~-~~~~~  138 (250)
T d2c4na1          80 RRQE-------GKKAYVVGEGAL-IHELYKAGFTITD--VNPDFVIV----------GETRSYNWDMMHKAAYF-VANGA  138 (250)
T ss_dssp             HTSS-------CCEEEEECCTHH-HHHHHHTTCEECS--SSCSEEEE----------CCCTTCCHHHHHHHHHH-HHTTC
T ss_pred             Hhhh-------cccccccCCHHH-HHHHHHhhhhccc--cccceeec----------cCCcccchHHHHHHHHH-Hhccc
Confidence            8665       467887664321 1245444444433  34555666          56788899988888874 67788


Q ss_pred             cEEEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce--EEEE
Q 025564          187 PMVVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII--LFLI  247 (251)
Q Consensus       187 ~li~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~--~~~~  247 (251)
                      .++++|+|...   .+..++.|++...++.+ ++++...|||+|.+|+.|++++|++|  .+||
T Consensus       139 ~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~lgi~p~e~v~I  199 (250)
T d2c4na1         139 RFIATNPDTHG---RGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIV  199 (250)
T ss_dssp             EEEESCCCSBS---STTCBCHHHHHHHHHHHHCCCCEECSTTSTHHHHHHHHHHTCCGGGEEEE
T ss_pred             ccccccccccc---CceeecCcchHHHHHHhhcccchhcccchhhhHhhhhhhhcCCchheEEe
Confidence            89999999764   33578999999999985 88899999999999999999999886  4555

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=3.6e-11  Score=94.45  Aligned_cols=71  Identities=17%  Similarity=0.057  Sum_probs=55.3

Q ss_pred             ccEEEEeccccccCC-------------------------CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHh
Q 025564           30 FKAWLLDQFGVLHDG-------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g-------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~   84 (251)
                      .|+|+||+|||||++                         .+++||+.++|++|+++|++++++||+++.. .....++.
T Consensus         5 pK~viFDlDGTL~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~-~~~~~l~~   83 (164)
T d1u7pa_           5 PKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQ-GANQLLEL   83 (164)
T ss_dssp             CSEEEECCBTTTBSSCTTTTCCSCEEECTTSCEEETTCCEECCCTTHHHHHHHHHHTTCCEEEEECCSCHH-HHHHHHHH
T ss_pred             CCEEEEcCCCcccCCccccccCccHhHHhcchHhhhhccccccchHHHHHHHHHHHCCCcEEEEeccccch-hhccchhc
Confidence            489999999999863                         2579999999999999999999999987532 22345678


Q ss_pred             CCCCCccccceeechhhH
Q 025564           85 LGFDPSLFAGAITSGELT  102 (251)
Q Consensus        85 ~Gl~~~~~~~Iits~~~~  102 (251)
                      +++... +..+.......
T Consensus        84 ~~~~~~-~~~~~~~~kp~  100 (164)
T d1u7pa_          84 FDLGKY-FIQREIYPGSK  100 (164)
T ss_dssp             TTCGGG-CSEEEESSSCH
T ss_pred             cccccc-ceeeecccCCC
Confidence            898877 56666555433

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.93  E-value=9e-10  Score=87.51  Aligned_cols=53  Identities=17%  Similarity=0.302  Sum_probs=44.7

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ..++||+.++|+.|+++|++++++||++.   ...+.|+++|+... |+.+++++++
T Consensus        78 ~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~---~~~~~l~~~~l~~~-fd~i~~~~~~  130 (187)
T d2fi1a1          78 PILFEGVSDLLEDISNQGGRHFLVSHRND---QVLEILEKTSIAAY-FTEVVTSSSG  130 (187)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCT---HHHHHHHHTTCGGG-EEEEECGGGC
T ss_pred             CcccchhHHHHHHHHhhhccccccccCcc---chhhhhhhhccccc-cccccccccc
Confidence            46789999999999999999999998753   24467899999988 7999988763

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=1.8e-09  Score=87.11  Aligned_cols=53  Identities=17%  Similarity=0.205  Sum_probs=45.9

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|+.|+++|++++++||+++.  .+...++.+|+... |+.+++++++
T Consensus        88 ~~~pg~~~~l~~L~~~g~~~~i~T~~~~~--~~~~~l~~~~l~~~-F~~i~~~~~~  140 (218)
T d1te2a_          88 PLLPGVREAVALCKEQGLLVGLASASPLH--MLEKVLTMFDLRDS-FDALASAEKL  140 (218)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHTTCGGG-CSEEEECTTS
T ss_pred             cccchHHHHHHHhhhcccccccccccccc--cccccccccccccc-cccccccccc
Confidence            47899999999999999999999998743  35678899999988 7999998764

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=98.86  E-value=1.8e-09  Score=86.93  Aligned_cols=52  Identities=27%  Similarity=0.440  Sum_probs=44.9

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ++||+.++|++|++.|++++++||+++.  .+...|+++|+... |+.++++.+.
T Consensus        96 l~~~~~~~L~~L~~~g~~~~i~tn~~~~--~~~~~l~~~gl~~~-f~~~~~~~~~  147 (224)
T d2hsza1          96 LYPNVKETLEALKAQGYILAVVTNKPTK--HVQPILTAFGIDHL-FSEMLGGQSL  147 (224)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHTTCGGG-CSEEECTTTS
T ss_pred             hHHHHHHHHHHHhccCCcccccccccHH--HHHHHHHhcCchhh-cccccccccc
Confidence            6799999999999999999999998743  35678899999988 7999888754

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=98.82  E-value=3.9e-10  Score=90.71  Aligned_cols=52  Identities=21%  Similarity=0.369  Sum_probs=43.6

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      +++||+.++|++|++ +++++++||+.+  ..+...|+++|+... |+.++++.+.
T Consensus        82 ~~~~g~~~~L~~l~~-~~~~~ivT~~~~--~~~~~~l~~~~l~~~-f~~i~~~~~~  133 (207)
T d2hdoa1          82 ELYPGITSLFEQLPS-ELRLGIVTSQRR--NELESGMRSYPFMMR-MAVTISADDT  133 (207)
T ss_dssp             EECTTHHHHHHHSCT-TSEEEEECSSCH--HHHHHHHTTSGGGGG-EEEEECGGGS
T ss_pred             ccccchhhhhhhhcc-cccccccccccc--ccccccccccccccc-cccccccccc
Confidence            578999999999975 799999999874  336688999999988 7898888754

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.69  E-value=7.4e-09  Score=82.68  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=44.1

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      ..++||+.++|+.|+++|++++++||+++.   ....|+++|+..+ |+.++++++.
T Consensus        81 ~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~~---~~~~l~~~gl~~~-f~~i~~s~~~  133 (204)
T d2go7a1          81 VVLMPGAREVLAWADESGIQQFIYTHKGNN---AFTILKDLGVESY-FTEILTSQSG  133 (204)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCTH---HHHHHHHHTCGGG-EEEEECGGGC
T ss_pred             CcccchHHhhhhcccccccchhhhcccchh---hhhhhhhcccccc-cccccccccc
Confidence            356899999999999999999999997642   3457899999998 7999887654

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=6.2e-08  Score=75.72  Aligned_cols=43  Identities=33%  Similarity=0.402  Sum_probs=38.2

Q ss_pred             ccEEEEeccccccCC------------CccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           30 FKAWLLDQFGVLHDG------------KKPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      -|+++||+||||...            .+++||+.++|+.|+++|++++++||.+
T Consensus         2 ~K~i~~D~DGtL~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~i~TNq~   56 (161)
T d2fpwa1           2 QKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQD   56 (161)
T ss_dssp             CEEEEECCBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECT
T ss_pred             CcEEEEeCCCCeEeeCCCCCccCCHHHceECccHHHHHHHHHHcCCceeeecccc
Confidence            379999999999753            2678999999999999999999999975

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.59  E-value=2.9e-08  Score=75.49  Aligned_cols=45  Identities=27%  Similarity=0.282  Sum_probs=39.9

Q ss_pred             CccEEEEeccccccCC-------------CccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           29 RFKAWLLDQFGVLHDG-------------KKPYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g-------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      +.++|+||+||||.+.             ..++||+.++|+.|+++|++++++||.+.
T Consensus         6 kpk~vifDiDgTL~~~~~~~~~~~~~~~~~~~~p~v~~~l~~l~~~G~~Iii~T~R~~   63 (149)
T d1ltqa1           6 KPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRES   63 (149)
T ss_dssp             SCEEEEEETBTTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred             CCcEEEEEcCCCcEeCCCCCcCCccccccCccCHHHHHHHHHHHhccCeEEEEecCcH
Confidence            6789999999999642             36899999999999999999999999873

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=5.4e-08  Score=80.70  Aligned_cols=67  Identities=18%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             cCccEEEEeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceee
Q 025564           28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iit   97 (251)
                      |.+|.++||+||||+...+-+ |.+.++|++|+++|++++++|+.+.  ..+.+.++.+++... ...+++
T Consensus         2 ~~iKli~~DlDGTL~~~~~~i~~~~~~al~~L~~~gi~v~i~TGR~~--~~~~~~~~~l~l~~~-~~~~i~   69 (271)
T d1rkqa_           2 LAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPY--AGVHNYLKELHMEQP-GDYCIT   69 (271)
T ss_dssp             CCCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCG--GGTHHHHHHTTCCST-TCEEEE
T ss_pred             CCeeEEEEeCCccccCCCCccCHHHHHHHHHHHHCCCEEEEECCCCH--HHHHHHHHHhcCcCC-CcEEEE
Confidence            689999999999999776655 7889999999999999999997653  345566778888765 244444

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=3.8e-08  Score=80.51  Aligned_cols=52  Identities=17%  Similarity=0.294  Sum_probs=42.3

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|+.|+ +|++++++||++.  ......++++|+..+ |+.++++.+.
T Consensus       109 ~~~~~~~~~L~~L~-~~~~l~i~Tn~~~--~~~~~~l~~~gl~~~-fd~i~~s~~~  160 (247)
T d2gfha1         109 ILADDVKAMLTELR-KEVRLLLLTNGDR--QTQREKIEACACQSY-FDAIVIGGEQ  160 (247)
T ss_dssp             CCCHHHHHHHHHHH-TTSEEEEEECSCH--HHHHHHHHHHTCGGG-CSEEEEGGGS
T ss_pred             ccCccHHHHHHHhh-cccceEEeecccc--hhhhhhhhhcccccc-cccccccccc
Confidence            45689999999998 5899999999764  235577889999988 7999988764

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=98.51  E-value=4.4e-08  Score=80.78  Aligned_cols=54  Identities=15%  Similarity=0.107  Sum_probs=42.4

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|+.|+++|++++++||+++.  .....|+++|+....++.++++++.
T Consensus        99 ~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~--~~~~~l~~~~l~~~f~d~~~~~d~~  152 (257)
T d1swva_          99 SPINGVKEVIASLRERGIKIGSTTGYTRE--MMDIVAKEAALQGYKPDFLVTPDDV  152 (257)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEBCSSCHH--HHHHHHHHHHHTTCCCSCCBCGGGS
T ss_pred             ccCCcHHHHHHHHHhcccceeecCCCchh--hHHHHHHHHhhcccccccccccccc
Confidence            36899999999999999999999998743  3556778888887623667777654

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.48  E-value=6.5e-08  Score=78.33  Aligned_cols=53  Identities=17%  Similarity=0.198  Sum_probs=44.5

Q ss_pred             ccCccHHHHHHHHHHCC-CeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G-~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|+.|+++| ++++++||+++.  .....|+.+|+..+ |+.++++++.
T Consensus        91 ~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~--~~~~~l~~~gl~~~-fd~i~~~~~~  144 (228)
T d2hcfa1          91 TLLEGVRELLDALSSRSDVLLGLLTGNFEA--SGRHKLKLPGIDHY-FPFGAFADDA  144 (228)
T ss_dssp             EECTTHHHHHHHHHTCTTEEEEEECSSCHH--HHHHHHHTTTCSTT-CSCEECTTTC
T ss_pred             eecCchHHHHhhhhccccccccccCCCcch--hhhhhhhhhccccc-cccccccccc
Confidence            46799999999999987 799999998743  36678899999988 7988887643

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.40  E-value=7.4e-08  Score=76.77  Aligned_cols=52  Identities=23%  Similarity=0.317  Sum_probs=42.4

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ..++||+.++|+.|+..+ +++++||+++.  .....|+++|+... |+.++++.+
T Consensus        83 ~~~~~~~~~~l~~l~~~~-~~~i~t~~~~~--~~~~~l~~~gl~~~-fd~v~~~~~  134 (210)
T d2ah5a1          83 AQLFPQIIDLLEELSSSY-PLYITTTKDTS--TAQDMAKNLEIHHF-FDGIYGSSP  134 (210)
T ss_dssp             CEECTTHHHHHHHHHTTS-CEEEEEEEEHH--HHHHHHHHTTCGGG-CSEEEEECS
T ss_pred             ccchhHHHHHHhhhhccc-chhhcccccch--hhhHHHHhhccccc-ccccccccc
Confidence            357899999999998765 89999998743  35578899999998 788888765

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=1.7e-07  Score=74.14  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=39.2

Q ss_pred             CccEEEEeccccccCC---------CccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           29 RFKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g---------~~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      .+++++||.||||...         .+++||+.++|+.|+++|++++++||.+
T Consensus         1 ~~~Av~~DrDGtl~~~~~y~~~~~~~~~~~gv~e~l~~L~~~g~~~~ivTNq~   53 (182)
T d2gmwa1           1 SVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQS   53 (182)
T ss_dssp             CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred             CCCEEEEeCCCCccCCCCCCCCHHHeeECCCHHHHHHHHhhcCchhhhhhccc
Confidence            3689999999999642         2689999999999999999999999986

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=98.33  E-value=8.3e-07  Score=66.18  Aligned_cols=42  Identities=21%  Similarity=0.286  Sum_probs=37.5

Q ss_pred             cEEEEeccccccC-------CCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           31 KAWLLDQFGVLHD-------GKKPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        31 ~~~l~D~DGvL~~-------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      +.++||+||||..       ...|++++.+.++.|++.|.++++.|..+
T Consensus         2 K~i~~DiDGTI~~~~~~~y~~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~   50 (124)
T d1xpja_           2 KKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARN   50 (124)
T ss_dssp             CEEEECSTTTTBCCCCSCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CEEEEeCCCCeECCCCCCcCccCcCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            6799999999975       23689999999999999999999999875

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=98.31  E-value=4e-07  Score=72.69  Aligned_cols=54  Identities=19%  Similarity=0.347  Sum_probs=44.7

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++|++.++++.|++.|++++++||+...  .....+++.++... |+.++++.+..
T Consensus        93 ~~~~~~~~~l~~l~~~~~~~~i~tn~~~~--~~~~~~~~~~~~~~-fd~~~~s~~~~  146 (220)
T d1zrna_          93 APFSEVPDSLRELKRRGLKLAILSNGSPQ--SIDAVVSHAGLRDG-FDHLLSVDPVQ  146 (220)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHTTCGGG-CSEEEESGGGT
T ss_pred             cccchhHHHHHHHHhcCCeEEeecchHHH--HHHHHHhhcccccc-ccceeeeeeee
Confidence            46789999999999999999999998743  34567788899988 79999988743

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.30  E-value=3.3e-07  Score=74.16  Aligned_cols=52  Identities=25%  Similarity=0.369  Sum_probs=42.7

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|++|+ +|++++++||+++  ......++++|+... |+.++++.+.
T Consensus       100 ~~~p~~~~~L~~l~-~~~~i~i~Sn~~~--~~~~~~l~~~gl~~~-fd~i~~s~~~  151 (230)
T d1x42a1         100 ELYPEVVEVLKSLK-GKYHVGMITDSDT--EYLMAHLDALGIKDL-FDSITTSEEA  151 (230)
T ss_dssp             CBCTTHHHHHHHHB-TTBEEEEEESSCH--HHHHHHHHHHTCGGG-CSEEEEHHHH
T ss_pred             cccccHHHHHHHhh-ccCceeeeecccc--ccchhhhcccccccc-cccccccccc
Confidence            35799999999996 5799999999763  335678889999988 7999988754

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=98.30  E-value=1.2e-07  Score=77.16  Aligned_cols=44  Identities=23%  Similarity=0.347  Sum_probs=38.8

Q ss_pred             CccEEEEeccccccC---------CCccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           29 RFKAWLLDQFGVLHD---------GKKPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~---------g~~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      +.++++||.||||..         ..+++||+.++|++|+++|++++++||.+
T Consensus        22 ~~~Aif~DrDGtl~~~~~y~~~~~~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~   74 (209)
T d2o2xa1          22 HLPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQS   74 (209)
T ss_dssp             SCCCEEECSBTTTBCCCSCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECH
T ss_pred             CCCEEEEeCCCCeECCCCCCCCHHHeEecccHHHHHHHHHhhCCeEEEecccc
Confidence            567999999999965         23689999999999999999999999954

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=98.28  E-value=3.6e-07  Score=73.18  Aligned_cols=51  Identities=22%  Similarity=0.308  Sum_probs=42.3

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~  101 (251)
                      .++||+.++|+.|++.|++++++||+..    ....++.+|+... |+.++++.+.
T Consensus        91 ~~~~g~~~~l~~l~~~~~~i~i~s~~~~----~~~~l~~~~l~~~-f~~i~~~~~~  141 (221)
T d1o08a_          91 DVYPGILQLLKDLRSNKIKIALASASKN----GPFLLERMNLTGY-FDAIADPAEV  141 (221)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCSCTT----HHHHHHHTTCGGG-CSEECCTTTS
T ss_pred             cccCCceeccccccccccceEEEeecch----hhHHHHhhccccc-cccccccccc
Confidence            4789999999999999999999998643    2367788999988 7888887753

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=5.2e-07  Score=73.15  Aligned_cols=65  Identities=17%  Similarity=0.136  Sum_probs=52.4

Q ss_pred             hHHHhcccCccEEEEeccccccCC--------------------------------------------------------
Q 025564           21 LRHIAETRRFKAWLLDQFGVLHDG--------------------------------------------------------   44 (251)
Q Consensus        21 ~~~~~~~~~~~~~l~D~DGvL~~g--------------------------------------------------------   44 (251)
                      +++++-  +.++|+||+||||.++                                                        
T Consensus         3 ~~~~~~--~~~aV~FD~DGTLi~~e~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
T d1nnla_           3 LRKLFY--SADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQP   80 (217)
T ss_dssp             HHHHHH--HCSEEEEETBTTTBSSCHHHHHHHHTTCTTTC------------CHHHHHHHHHHHHCCCHHHHHHHHHHSC
T ss_pred             hhHhhC--CCCEEEEcCccccCCccHHHHHHHHcCChHHHHHHHHHHHcCCCCHHHHHHHHHHhcccchHHHHHHHHhhc
Confidence            566666  7899999999999861                                                        


Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      .+++||+.+++++|+++|++++++|++...  .+...++.+|++.
T Consensus        81 ~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~--~v~~i~~~lgi~~  123 (217)
T d1nnla_          81 PHLTPGIRELVSRLQERNVQVFLISGGFRS--IVEHVASKLNIPA  123 (217)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHH--HHHHHHHHTTCCG
T ss_pred             cccCHHHHHHHHHHHhCCCEEEEECCCchH--HHHHHHHHhCCcc
Confidence            246799999999999999999999987632  2456677899874

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.23  E-value=7.9e-07  Score=66.15  Aligned_cols=57  Identities=18%  Similarity=0.286  Sum_probs=44.8

Q ss_pred             EEEEeccccccCCC-----ccCccHHHHHHHHHHCCCeEEEEeCCCC-CchhHHHHhHhCCCC
Q 025564           32 AWLLDQFGVLHDGK-----KPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFD   88 (251)
Q Consensus        32 ~~l~D~DGvL~~g~-----~~~pGa~e~L~~L~~~G~~v~ivTN~s~-~~~~~~~~L~~~Gl~   88 (251)
                      .++||+||||....     +|+|++.++|+.|+++|..+++.|..+. ..+...+-|++.|++
T Consensus         2 ti~vDiDGTl~~~~~~~~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~   64 (122)
T d2obba1           2 TIAVDFDGTIVEHRYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLE   64 (122)
T ss_dssp             EEEECCBTTTBCSCTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCC
T ss_pred             EEEEEcCCCcCCCCCCccccccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCC
Confidence            47999999997533     6899999999999999999999997653 223344566677776

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.1e-06  Score=70.51  Aligned_cols=47  Identities=11%  Similarity=0.012  Sum_probs=37.2

Q ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccccee
Q 025564           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (251)
Q Consensus        47 ~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Ii   96 (251)
                      ++||+.++|++|+++|++++++||+++..  ....++.+|+... ++...
T Consensus       128 ~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~--~~~~~~~~~~~~~-~~~~~  174 (253)
T d1zs9a1         128 FFADVVPAVRKWREAGMKVYIYSSGSVEA--QKLLFGHSTEGDI-LELVD  174 (253)
T ss_dssp             CCTTHHHHHHHHHHTTCEEEEECSSCHHH--HHHHHHTBTTBCC-GGGCS
T ss_pred             cCCCHHHHHHHHhhccCceeecCCCcHHH--HHHHHHHcCcchh-hhhcc
Confidence            57999999999999999999999988533  4466788888765 34433

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.1e-07  Score=71.01  Aligned_cols=54  Identities=15%  Similarity=0.031  Sum_probs=40.1

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCc-hh-HHHHhHhCCCCCccccceeechh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRA-ST-TIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~-~~-~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      .++||+.++|+.|+++|++++++||+.... .. ........++... |+.|+++.+
T Consensus        99 ~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~-fd~i~~s~~  154 (225)
T d1zd3a1          99 KINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMH-FDFLIESCQ  154 (225)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTT-SSEEEEHHH
T ss_pred             CCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChHhh-ccEEEeccc
Confidence            457888999999999999999999987532 22 2233345677776 688888875

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=1.2e-06  Score=72.66  Aligned_cols=58  Identities=19%  Similarity=0.246  Sum_probs=47.8

Q ss_pred             ccEEEEeccccccCCCccC-ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           30 FKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~-pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      +|.++||+||||.+....+ +.+.++|++|+++|++++++|+.+  ...+...++.+|+..
T Consensus         1 iKli~~DlDGTLl~~~~~i~~~~~~~l~~l~~~Gi~~~i~TGR~--~~~~~~~~~~l~~~~   59 (285)
T d1nrwa_           1 MKLIAIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTGRA--HFDVMSIFEPLGIKT   59 (285)
T ss_dssp             CCEEEEECCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHGGGTCCC
T ss_pred             CeEEEEECCccccCCCCccCHHHHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHhCCCc
Confidence            5789999999999876655 789999999999999999999765  334667777888763

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.16  E-value=1.5e-06  Score=69.34  Aligned_cols=58  Identities=12%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             CccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      ++|.++||+||||.+... +.+.+.++|++|+++|++++++|+.+.  ..+...+...++.
T Consensus         1 kiK~i~~D~DGTL~~~~~~i~~~~~~~l~~l~~~gi~v~~~TGR~~--~~~~~~~~~~~~~   59 (230)
T d1wr8a_           1 KIKAISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTV--QFAEAASILIGTS   59 (230)
T ss_dssp             CCCEEEEESTTTTBCTTSCBCHHHHHHHHHHHHTTCCEEEECSSCH--HHHHHHHHHHTCC
T ss_pred             CceEEEEecCCCCcCCCCccCHHHHHHHHHHHhCCCeEEEEeCCcH--HHHHHHHHhcCCC
Confidence            578999999999998765 567899999999999999999998663  2333444555554

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=2.2e-06  Score=68.31  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=47.6

Q ss_pred             CccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      +.-.|++|+||||++... ..+.+.++|++|+++|++++++|+.+  ...+...++.+|+..
T Consensus         3 ~~~li~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~i~TGR~--~~~~~~~~~~~~~~~   62 (232)
T d1xvia_           3 QPLLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKT--SAEMLYLQKTLGLQG   62 (232)
T ss_dssp             CCEEEEEECTTTTSCSSCCSCCTTHHHHHHHHHTTCCEEEECSSC--HHHHHHHHHHTTCTT
T ss_pred             CCEEEEEECCCCccCCcCcCCHHHHHHHHHHHHCCCEEEEEeCCC--hhhchhHHHHhccCC
Confidence            445788899999997654 56899999999999999999999765  344566777888764

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=1.2e-06  Score=69.73  Aligned_cols=56  Identities=11%  Similarity=0.020  Sum_probs=43.5

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCC-ch-hHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRR-AS-TTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~-~~-~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++||+.++|++|+++|++++++||+... .. .....+...|+..+ |+.+++++++.
T Consensus        97 ~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~~~-fd~i~~s~~~~  154 (222)
T d1cr6a1          97 SINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQH-FDFLIESCQVG  154 (222)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHGGG-CSEEEEHHHHS
T ss_pred             CCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChHhh-hceeeehhhcc
Confidence            56789999999999999999999998642 22 23344667888888 79999887643

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.10  E-value=1.6e-06  Score=69.79  Aligned_cols=57  Identities=21%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      +|.+++|+||||+++..+ +...++|++|+++|++++++|..+  ...+...++.+++..
T Consensus         2 iKli~~DlDGTLl~~~~~-~~~~~ai~~l~~~G~~~~~aTGR~--~~~~~~~~~~~~~~~   58 (243)
T d1wzca1           2 IRLIFLDIDKTLIPGYEP-DPAKPIIEELKDMGFEIIFNSSKT--RAEQEYYRKELEVET   58 (243)
T ss_dssp             EEEEEECCBTTTBSSSCS-GGGHHHHHHHHHTTEEEEEECSSC--HHHHHHHHHHHTCCS
T ss_pred             cEEEEEeCCCCCCCCCCC-HHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHhcccc
Confidence            589999999999987664 678999999999999999999765  334556667777753

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=2.3e-06  Score=68.63  Aligned_cols=44  Identities=14%  Similarity=0.019  Sum_probs=35.6

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .++.||+.++++.|+++|++++++||+.+.  .+...|+++|+...
T Consensus        74 ~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~--~i~~~l~~l~~~~~  117 (226)
T d2feaa1          74 AKIREGFREFVAFINEHEIPFYVISGGMDF--FVYPLLEGIVEKDR  117 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHH--HHHHHHTTTSCGGG
T ss_pred             cchhHHHHHHHHHHHhcccccccCCcchhh--hHHHHHHHcCCccc
Confidence            357899999999999999999999997643  35567788887643

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.7e-06  Score=71.33  Aligned_cols=57  Identities=25%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             ccEEEEeccccccCCCccC--ccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCC
Q 025564           30 FKAWLLDQFGVLHDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~--pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~   88 (251)
                      +|.++||+||||++....+  |.+.++|++|+++|++++++|+.+.  ..+...++++++.
T Consensus         2 IKli~~DlDGTLl~~~~~~~~~~~~~~l~~l~~~gi~~~i~TGR~~--~~~~~~~~~l~~~   60 (269)
T d1rlma_           2 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQY--YQLISFFPELKDE   60 (269)
T ss_dssp             CCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHHHTCEEEEECSSCH--HHHGGGCTTTTTT
T ss_pred             EEEEEEeCCccCcCCCCcCChHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHhCcc
Confidence            6899999999998765543  6789999999999999999997553  3344555666665

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.97  E-value=4.5e-06  Score=66.55  Aligned_cols=50  Identities=30%  Similarity=0.272  Sum_probs=35.6

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechh
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~  100 (251)
                      ..++||+.++|++|   +.+.+++||+++.  .....|+++|+... |+.++++.+
T Consensus        84 ~~~~~g~~~~L~~l---~~~~~i~t~~~~~--~~~~~l~~~~l~~~-f~~~~~~~~  133 (222)
T d2fdra1          84 VKIIDGVKFALSRL---TTPRCICSNSSSH--RLDMMLTKVGLKPY-FAPHIYSAK  133 (222)
T ss_dssp             CCBCTTHHHHHHHC---CSCEEEEESSCHH--HHHHHHHHTTCGGG-TTTCEEEHH
T ss_pred             cchhhhHHHHhhhc---cccceeeeecchh--hhhhhhcccccccc-cceeecccc
Confidence            35677777777665   4577899998743  35677899999988 677665543

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=97.92  E-value=3.8e-06  Score=69.15  Aligned_cols=45  Identities=20%  Similarity=0.211  Sum_probs=38.8

Q ss_pred             CccEEEEeccccccC-CC-ccCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           29 RFKAWLLDQFGVLHD-GK-KPYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~-g~-~~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      ++|.++||+||||+. .. .+-|.+.++|++|+++|.+++++|+.+.
T Consensus         9 ~ikli~~DlDGTLl~~~~~~i~~~~~~al~~l~~~Gi~v~i~TGR~~   55 (283)
T d2b30a1           9 DIKLLLIDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSK   55 (283)
T ss_dssp             CCCEEEEETBTTTBCCTTTCSCHHHHHHHHHHHHHTCEEEEECSSCH
T ss_pred             CccEEEEECCCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            789999999999984 33 4568899999999999999999998663

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.90  E-value=5.6e-06  Score=68.05  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=37.0

Q ss_pred             cEEEEeccccccCCC-c-cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           31 KAWLLDQFGVLHDGK-K-PYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        31 ~~~l~D~DGvL~~g~-~-~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      |+++||+||||++.. . +-+...++|++|+++|++++++|..+.
T Consensus         2 k~if~DlDGTL~~~~~~~i~~~~~~al~~l~~~gi~v~~~TGR~~   46 (260)
T d2rbka1           2 KALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPK   46 (260)
T ss_dssp             CEEEECSBTTTBCTTTSSCCHHHHHHHHHHHHTTCEEEEECSSCG
T ss_pred             eEEEEECCCCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCH
Confidence            789999999998643 3 446899999999999999999998764

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.89  E-value=6.5e-06  Score=66.14  Aligned_cols=44  Identities=18%  Similarity=0.217  Sum_probs=39.0

Q ss_pred             ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCC
Q 025564           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSR   73 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~   73 (251)
                      +|.++||+||||.+... +-+++.++|++|++.|.+++++|..+.
T Consensus         3 iKli~~D~DGTL~~~~~~i~~~~~~al~~l~~~g~~v~~~TGr~~   47 (225)
T d1l6ra_           3 IRLAAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVI   47 (225)
T ss_dssp             CCEEEEEHHHHSBCTTSCBCHHHHHHHHHHHHTTCEEEEECSSCH
T ss_pred             eEEEEEecCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            68999999999997665 568999999999999999999998653

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=97.88  E-value=1e-05  Score=65.15  Aligned_cols=52  Identities=27%  Similarity=0.376  Sum_probs=40.3

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhH
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~  102 (251)
                      .++|++.++|++|+  +++++++||++...  ....+++.|+... |+.+++++++.
T Consensus        93 ~~~~~~~~~L~~l~--~~~~~v~s~~~~~~--~~~~~~~~~~~~~-fd~v~~s~~~~  144 (245)
T d1qq5a_          93 TPYPDAAQCLAELA--PLKRAILSNGAPDM--LQALVANAGLTDS-FDAVISVDAKR  144 (245)
T ss_dssp             CBCTTHHHHHHHHT--TSEEEEEESSCHHH--HHHHHHHTTCGGG-CSEEEEGGGGT
T ss_pred             ccchhhhHHHHHHh--hhceeEEeccchHH--HHHHHhhcccccc-ccccccccccc
Confidence            55677888888774  78999999987533  4567788999988 79999988753

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=2.1e-05  Score=63.32  Aligned_cols=61  Identities=15%  Similarity=0.108  Sum_probs=48.6

Q ss_pred             ccEEEEeccccccCC-----------------------------------CccCccHHHHHHHHHHCCCeEEEEeCCCC-
Q 025564           30 FKAWLLDQFGVLHDG-----------------------------------KKPYPGAISTLEMLATTGAKMVVISNSSR-   73 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g-----------------------------------~~~~pGa~e~L~~L~~~G~~v~ivTN~s~-   73 (251)
                      .-+|+||+|-|+.+.                                   ..++||+.+++++++++|.+++++||.+. 
T Consensus        35 P~AIifDIDETvLdnspy~~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~A~p~pga~~fl~~~~~~Gv~IfyVTnR~~~  114 (209)
T d2b82a1          35 PMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPT  114 (209)
T ss_dssp             CCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCCC
T ss_pred             CceEEEcchhhhhcCcHHHHhhhhhcCcCcccccCCCcchHHHhcccccccCcchhHHHHHHHHHHcCCeEEEEeCCchh
Confidence            349999999999873                                   13678999999999999999999999864 


Q ss_pred             CchhHHHHhH-hCCCCCc
Q 025564           74 RASTTIDKLK-SLGFDPS   90 (251)
Q Consensus        74 ~~~~~~~~L~-~~Gl~~~   90 (251)
                      ..+...+.|+ .+|++..
T Consensus       115 ~~e~T~~nL~K~lG~p~~  132 (209)
T d2b82a1         115 KTETVSKTLADNFHIPAT  132 (209)
T ss_dssp             SSCCHHHHHHHHTTCCTT
T ss_pred             hHHHHHHHHHHHcCCCcc
Confidence            3444566775 4999754

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=97.74  E-value=1.5e-05  Score=62.67  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=70.0

Q ss_pred             CccEEEEeccccccCCCccCcc---------H--HHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceee
Q 025564           29 RFKAWLLDQFGVLHDGKKPYPG---------A--ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~~~pG---------a--~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iit   97 (251)
                      +++.++||+||||++|.-.+..         +  ...++.|++.|+.++++|...  ...+..+.+++++... +.....
T Consensus         4 ~ik~~i~DvDGVlTDG~v~~~~dG~e~k~F~~~Dg~gi~~l~~~gi~~~iis~~~--~~~v~~~~~~l~~~~~-~~~~~~   80 (177)
T d1k1ea_           4 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRD--SPILRRRIADLGIKLF-FLGKLE   80 (177)
T ss_dssp             GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCC--CHHHHHHHHHHTCCEE-EESCSC
T ss_pred             cCeEEEEccCCcccCCeEEEeCCCCEEEEEECcchHHHHHHhhhcEEEEEecCCc--hhHHHHHHhhhccccc-cccccc
Confidence            7899999999999987533221         1  236889999999999999744  3345677788888765 355555


Q ss_pred             chhhHHHHHhccCchhhhhcCCeEEEeccCCcccccccCCCcee
Q 025564           98 SGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKV  141 (251)
Q Consensus        98 s~~~~~~~L~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~g~~~  141 (251)
                      .......++.+.+..+     ..+..+|.+...+..|+..|+.+
T Consensus        81 K~~~l~~~~~~~~i~~-----~~v~~vGDd~nDl~~l~~~g~si  119 (177)
T d1k1ea_          81 KETACFDLMKQAGVTA-----EQTAYIGDDSVDLPAFAACGTSF  119 (177)
T ss_dssp             HHHHHHHHHHHHTCCG-----GGEEEEECSGGGHHHHHHSSEEE
T ss_pred             HHHHHHHHHHHhcCCc-----ceeEEecCCccHHHHHhhCCeEE
Confidence            5555566666555421     45655676544445666666644

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.3e-05  Score=63.90  Aligned_cols=43  Identities=19%  Similarity=0.079  Sum_probs=35.5

Q ss_pred             CccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      ..+.++||+||||++..+ +-|...++|++|+++|+ ++++|..+
T Consensus         2 ~~kl~~fDlDGTLl~~~~~i~~~~~~al~~l~~~g~-~~i~Tgr~   45 (243)
T d2amya1           2 GPALCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIK-IGVVGGSD   45 (243)
T ss_dssp             CSEEEEEESBTTTBCTTSCCCHHHHHHHHHHTTTSE-EEEECSSC
T ss_pred             CCEEEEEcCcCCeeCCCCcCCHHHHHHHHHHHcCCC-EEEEcCCC
Confidence            468899999999997654 55899999999998884 77888654

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=1.2e-05  Score=64.29  Aligned_cols=44  Identities=30%  Similarity=0.379  Sum_probs=37.2

Q ss_pred             CccEEEEeccccccCCC------------c-cCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           29 RFKAWLLDQFGVLHDGK------------K-PYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~------------~-~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      +-+.++||.||||....            . .+|++.++|+.|+++|+.++|+||.+
T Consensus        20 ~~Kia~fDrDGtLik~~~~~~~~~~~~d~~~l~~~v~~~i~~L~~~gy~iiIvTNQ~   76 (195)
T d1yj5a1          20 QGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQM   76 (195)
T ss_dssp             CSCEEEECSBTTTEECSSSCSSCSSTTCCEESCTTHHHHHHHHHHHTCEEEEEEECH
T ss_pred             cCcEEEEECCCceEeeCCCCcCCCChhhceeccCCHHHHHHHHHhCCcEEEEecCcc
Confidence            45889999999997421            1 36999999999999999999999964

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=3.9e-05  Score=63.04  Aligned_cols=55  Identities=16%  Similarity=0.144  Sum_probs=40.6

Q ss_pred             ccEEEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCC
Q 025564           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl   87 (251)
                      ||.|+||+||||.+... +-|...++|++|++.| +++++|..+  ...+...+++++.
T Consensus         2 ~Kli~~DlDGTL~~~~~~i~~~~~~al~~l~~~~-~~~i~TGR~--~~~~~~~~~~~~~   57 (267)
T d1nf2a_           2 YRVFVFDLDGTLLNDNLEISEKDRRNIEKLSRKC-YVVFASGRM--LVSTLNVEKKYFK   57 (267)
T ss_dssp             BCEEEEECCCCCSCTTSCCCHHHHHHHHHHTTTS-EEEEECSSC--HHHHHHHHHHHSS
T ss_pred             eEEEEEeCCccccCCcCccCHHHHHHHHHHHcCC-EEEEECCCC--hHHHHHHHHHhcc
Confidence            68999999999987665 5578899999998755 789998654  3334455555443

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=1.2e-05  Score=61.55  Aligned_cols=53  Identities=23%  Similarity=0.243  Sum_probs=39.7

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhC-CCCCccccceeechhh
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL-GFDPSLFAGAITSGEL  101 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~-Gl~~~~~~~Iits~~~  101 (251)
                      .+.+|+.+++..++++|++++++||+++...+  ..+.++ |+... |+.++++++.
T Consensus        84 ~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~~--~~~~~~~~l~~~-fd~v~~s~~~  137 (197)
T d2b0ca1          84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTT--FWPEEYPEIRDA-ADHIYLSQDL  137 (197)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCTTS--CCGGGCHHHHHH-CSEEEEHHHH
T ss_pred             ccCchhHHHHHHHHhcCCeEEEEeCccHHHHH--HHHHHcccchhh-ccceeecccc
Confidence            56788999999999999999999998754321  234443 66666 6888887653

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.35  E-value=4.6e-05  Score=61.53  Aligned_cols=59  Identities=8%  Similarity=-0.034  Sum_probs=41.6

Q ss_pred             cCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        28 ~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      |+-..+++|+||||.+....+ .....+.+++++|++++++|..+  ...+...++.+++..
T Consensus         1 m~~~li~~DlDGTL~~~~~~~-~~~~~~~~~~~~g~~v~i~TGR~--~~~~~~~~~~~~~~~   59 (244)
T d1s2oa1           1 MRQLLLISDLDNTWVGDQQAL-EHLQEYLGDRRGNFYLAYATGRS--YHSARELQKQVGLME   59 (244)
T ss_dssp             CCSEEEEECTBTTTBSCHHHH-HHHHHHHHTTGGGEEEEEECSSC--HHHHHHHHHHHTCCC
T ss_pred             CCceEEEEECcccCCCCCCCH-HHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHcCCCC
Confidence            455688899999999876544 33445556678899999999765  334556667777754

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=9.5e-05  Score=58.38  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=30.7

Q ss_pred             EEEeccccccCCCc-cCccHHHHHHHHHHCCCeEEEEeCC
Q 025564           33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNS   71 (251)
Q Consensus        33 ~l~D~DGvL~~g~~-~~pGa~e~L~~L~~~G~~v~ivTN~   71 (251)
                      ++||+||||++... +-|...++|++|+++|+ ++++|..
T Consensus         4 ~lFDlDGTLl~~~~~is~~~~~~i~~l~~~g~-~~i~tgr   42 (244)
T d2fuea1           4 CLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQ-IGVVGGS   42 (244)
T ss_dssp             EEEESBTTTBSTTSCCCHHHHHHHHHHTTTSE-EEEECSS
T ss_pred             EEEccccCccCCCCcCCHHHHHHHHHHHhCCC-EEEEecC
Confidence            45799999998765 45899999999999995 5667654

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.30  E-value=0.00032  Score=52.37  Aligned_cols=98  Identities=17%  Similarity=0.182  Sum_probs=62.6

Q ss_pred             CccEEEEeccccccCCC--ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceeechhhHHHHH
Q 025564           29 RFKAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~--~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iits~~~~~~~L  106 (251)
                      +...++||.+|++..+.  .+-|++.++++.|++.|+++.++|......  ....-+++|++.. +..+. +. -...++
T Consensus         2 ~~~~~~~d~~~~~~~g~~D~lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~--a~~ia~~lgI~~v-~~~~~-p~-~k~~~v   76 (135)
T d2b8ea1           2 KVTAVIFDKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRS--AEAISRELNLDLV-IAEVL-PH-QKSEEV   76 (135)
T ss_dssp             HCCEEEEECCCCCBCSCCCCBCTTHHHHHHHHHHTTCEEEEECSSCHHH--HHHHHHHHTCSEE-ECSCC-HH-HHHHHH
T ss_pred             eEEEEEECCceEEEEecCCCCCccHHHHHHHHHHcCCEEEEEcCcchhh--hhHHHhhhhhhhh-ccccc-hh-HHHHHH
Confidence            35689999999998775  478999999999999999999999755322  2233356788765 33332 22 223444


Q ss_pred             hccCchhhhhcCCeEEEeccCCcccccccCC
Q 025564          107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGL  137 (251)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~  137 (251)
                      ++...      |..+..+|.+......|+..
T Consensus        77 ~~~q~------~~~v~~vGDg~nD~~aL~~A  101 (135)
T d2b8ea1          77 KKLQA------KEVVAFVGDGINDAPALAQA  101 (135)
T ss_dssp             HHHTT------TSCEEEEECSSSSHHHHHHS
T ss_pred             HHHHc------CCEEEEEeCCCCcHHHHHhC
Confidence            44333      45565566553333334333

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.22  E-value=0.00012  Score=57.64  Aligned_cols=40  Identities=20%  Similarity=0.159  Sum_probs=32.3

Q ss_pred             EEEEeccccccCC------CccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           32 AWLLDQFGVLHDG------KKPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        32 ~~l~D~DGvL~~g------~~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      .++||+||||.+.      ..+-|.+.++|++|++ +.+++|+|+.+
T Consensus         2 Li~~DlDGTL~~~~~~~~~~~i~~~~~~~l~~l~~-~~~v~i~TGR~   47 (229)
T d1u02a_           2 LIFLDYDGTLVPIIMNPEESYADAGLLSLISDLKE-RFDTYIVTGRS   47 (229)
T ss_dssp             EEEEECBTTTBCCCSCGGGCCCCHHHHHHHHHHHH-HSEEEEECSSC
T ss_pred             EEEEEecCCCCCCCCChhhCCCCHHHHHHHHHHhh-CCCEEEEcCCC
Confidence            6899999999852      2466889999999987 56799998755

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.99  E-value=0.00048  Score=53.05  Aligned_cols=28  Identities=29%  Similarity=0.349  Sum_probs=23.2

Q ss_pred             CccCccHHHHHHHHHHCCCeEEEEeCCC
Q 025564           45 KKPYPGAISTLEMLATTGAKMVVISNSS   72 (251)
Q Consensus        45 ~~~~pGa~e~L~~L~~~G~~v~ivTN~s   72 (251)
                      ..+.+|+.+.++.++++|..++++|++.
T Consensus        74 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~  101 (210)
T d1j97a_          74 ITPTEGAEETIKELKNRGYVVAVVSGGF  101 (210)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEeecccc
Confidence            4567888889999999999999988765

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.49  E-value=0.004  Score=47.83  Aligned_cols=58  Identities=14%  Similarity=0.324  Sum_probs=45.8

Q ss_pred             cEEEEeccccccCC--CccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           31 KAWLLDQFGVLHDG--KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        31 ~~~l~D~DGvL~~g--~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      ..+++|.+|+++-.  +.+.|++.++++.|++.|+++.++|.....+  ....-+++|+...
T Consensus         3 ~~~~~d~~~~~~~~~~Dp~R~~~~~~I~~l~~~GI~v~miTGD~~~t--A~~ia~~~Gi~~~   62 (168)
T d1wpga2           3 SVICSDKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGT--AIAICRRIGIFGE   62 (168)
T ss_dssp             CEEEECCTTTTBCCCECCBCTTHHHHHHHHHHTTCEEEEECSSCHHH--HHHHHHHTTSSCT
T ss_pred             EEEEECCccEEEEEecCCCchhHHHHHHHHHHCcCEEEEECCCCHHH--HHHHHHHcCCCCC
Confidence            36889999999987  5788999999999999999999999876422  2233345788644

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.007  Score=46.88  Aligned_cols=27  Identities=19%  Similarity=0.490  Sum_probs=22.8

Q ss_pred             ccCccHHHHHHHHHHCCC-eEEEEeCCC
Q 025564           46 KPYPGAISTLEMLATTGA-KMVVISNSS   72 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~-~v~ivTN~s   72 (251)
                      .|+|||.+++++|++.|. .+.++|..+
T Consensus        74 ~p~~gA~e~l~~L~~~~~~~v~i~t~~~  101 (195)
T d1q92a_          74 EPLPGAVEAVKEMASLQNTDVFICTSPI  101 (195)
T ss_dssp             CBCTTHHHHHHHHHHSTTEEEEEEECCC
T ss_pred             CcccCHHHHHHHHhhccCccceEEcccc
Confidence            678999999999998665 678888765

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.69  E-value=0.0058  Score=52.75  Aligned_cols=63  Identities=17%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             ccccCCCc--cCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCcccc--ceeechhhHHH
Q 025564           39 GVLHDGKK--PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA--GAITSGELTHQ  104 (251)
Q Consensus        39 GvL~~g~~--~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~--~Iits~~~~~~  104 (251)
                      |-+++...  |.||+.++|+.|+++|++++++||.++.  .....++++|+..+ |+  .+++++++...
T Consensus       206 g~i~~~~~i~p~~~v~~~l~~lk~aGi~v~i~Tg~~~~--~a~~il~~lgl~~~-F~~~~i~~~~d~~~~  272 (380)
T d1qyia_         206 GYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYT--ETVVPFENLGLLPY-FEADFIATASDVLEA  272 (380)
T ss_dssp             CTTTTCCBSSCHHHHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHHHTCGGG-SCGGGEECHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHHHHCCCeEEEECCCCHH--HHHHHHHHcCCccc-CCcceEEecchhhhh
Confidence            44444443  5679999999999999999999998753  35577889999876 44  57777765443

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0021  Score=49.82  Aligned_cols=29  Identities=17%  Similarity=0.290  Sum_probs=22.2

Q ss_pred             CccEEEEeccccccCC----CccCccHHHHHHH
Q 025564           29 RFKAWLLDQFGVLHDG----KKPYPGAISTLEM   57 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g----~~~~pGa~e~L~~   57 (251)
                      +|++||||+||||.+.    ..++|.+.+.+.+
T Consensus         2 ~~~~~lfD~dGTl~d~~~v~d~lfp~~~~~~~~   34 (225)
T d2g80a1           2 NYSTYLLDIEGTVCPISFVKETLFPYFTNKVPQ   34 (225)
T ss_dssp             CCSEEEECCBTTTBCTHHHHHTHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCcccHhhhhhhhHHHHHHHHH
Confidence            7999999999999974    3456766666543

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.47  E-value=0.0011  Score=50.73  Aligned_cols=35  Identities=20%  Similarity=0.117  Sum_probs=27.2

Q ss_pred             ccEEEEeccccccCCCccCccHHHHHHH-HHHCCCeEEEEeCCCC
Q 025564           30 FKAWLLDQFGVLHDGKKPYPGAISTLEM-LATTGAKMVVISNSSR   73 (251)
Q Consensus        30 ~~~~l~D~DGvL~~g~~~~pGa~e~L~~-L~~~G~~v~ivTN~s~   73 (251)
                      +|.++|||||||.+.         .++. .++.|++++++|..+.
T Consensus         2 mkli~fDlDGTLl~e---------~~~~~a~~~Gi~~~~~tgR~~   37 (206)
T d1rkua_           2 MEIACLDLEGVLVPE---------IWIAFAEKTGIDALKATTRDI   37 (206)
T ss_dssp             CEEEEEESBTTTBCC---------HHHHHHHHHTCGGGGCCTTTC
T ss_pred             cEEEEEcCccchHHH---------HHHHHHHHcCCHHHHHHCCCC
Confidence            589999999999862         3444 4678999999998763

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0092  Score=46.14  Aligned_cols=45  Identities=13%  Similarity=0.054  Sum_probs=36.7

Q ss_pred             CccEEEEeccccccCCC------------------------ccCccHHHHHHHHHHCCCeEEEEeCCCCC
Q 025564           29 RFKAWLLDQFGVLHDGK------------------------KPYPGAISTLEMLATTGAKMVVISNSSRR   74 (251)
Q Consensus        29 ~~~~~l~D~DGvL~~g~------------------------~~~pGa~e~L~~L~~~G~~v~ivTN~s~~   74 (251)
                      +...+++|+|+||+...                        ..-||+.+||+.+.+. +.++|-|.+++.
T Consensus        14 ~k~~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-yei~I~Ta~~~~   82 (181)
T d1ta0a_          14 DKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAK   82 (181)
T ss_dssp             TSCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHH
T ss_pred             CCeEEEEeCCCCEEccccCCCCCccceeeecccceeeeeEEecCCCHHHHHHHHHhc-eEEEEEcCCcHH
Confidence            34689999999998522                        2489999999999865 899999988753

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.62  E-value=0.015  Score=48.42  Aligned_cols=42  Identities=12%  Similarity=0.097  Sum_probs=33.3

Q ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCC
Q 025564           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (251)
Q Consensus        46 ~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~   89 (251)
                      .+.||+.++++.|+++|++++++|++-..  -+...|+++|++.
T Consensus       135 ~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~--~ie~vl~~lg~~~  176 (291)
T d2bdua1         135 MLKEGYENFFGKLQQHGIPVFIFSAGIGD--VLEEVIRQAGVYH  176 (291)
T ss_dssp             CBCBTHHHHHHHHHHHTCCEEEEEEEEHH--HHHHHHHHTTCCB
T ss_pred             CcccCHHHHHHHHHHcCCeEEEEcCChHH--HHHHHHHHcCCCc
Confidence            45799999999999999999999986432  3456677788864

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.0017  Score=50.09  Aligned_cols=72  Identities=13%  Similarity=0.038  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhCCCcE-EEccCCccccccC-ceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          172 QDLEKILEICASKKIPM-VVANPDYVTVEAR-ALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       172 ~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~-~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      +.+..++..+..+|.++ ++||......... ........+...++. .+......+||+|.+|+.+++++|++|
T Consensus       102 ~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p  176 (225)
T d1zd3a1         102 RPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASP  176 (225)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHHTCCG
T ss_pred             ccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChHhhccEEEeccccccchhHHHHHHHHhhhcccCc
Confidence            45667777777889887 5566544322110 000111112222222 122345678999999999999999865

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.0029  Score=49.22  Aligned_cols=69  Identities=19%  Similarity=0.254  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ....+++.+.++|.++ ++||........   .+..-.+...+... +.+..-.+||+|.+|+.+++++|++|-
T Consensus        92 g~~~~l~~L~~~g~~~~i~T~~~~~~~~~---~l~~~~l~~~F~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~  162 (218)
T d1te2a_          92 GVREAVALCKEQGLLVGLASASPLHMLEK---VLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPL  162 (218)
T ss_dssp             THHHHHHHHHHTTCEEEEEESSCHHHHHH---HHHHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHHHTSCGG
T ss_pred             hHHHHHHHhhhcccccccccccccccccc---ccccccccccccccccccccccchhhHHHHHHHHHHcCCCch
Confidence            3466777777889886 566654432211   01011111222322 334445799999999999999999774

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.95  E-value=0.0041  Score=48.23  Aligned_cols=73  Identities=14%  Similarity=-0.014  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhCCCcEEE-ccCCccccccCce-eeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          171 LQDLEKILEICASKKIPMVV-ANPDYVTVEARAL-RVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~li~-~n~D~~~~~~~~~-~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      |......++.+..+|.++.. +|.....+..... ......+..+++.. +.+.+..+||+|.+|+.++++++++|
T Consensus        99 ~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~~~fd~i~~s~~~~~~KP~p~~~~~~~~~~~v~p  174 (222)
T d1cr6a1          99 NRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKP  174 (222)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHGGGCSEEEEHHHHSCCTTCHHHHHHHHHHHTSCT
T ss_pred             CccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChHhhhceeeehhhccCCCCChHHHHHHHHHhCCCc
Confidence            35666777777788888744 4433321111000 00011122222321 33345578999999999999999886

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.51  E-value=0.008  Score=45.86  Aligned_cols=70  Identities=13%  Similarity=0.131  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceEEEE
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIILFLI  247 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~  247 (251)
                      ....++.+.++|.++ ++||.+.... ..-...+   +...+... +.+.....||+|.+|+.+++++++++..||
T Consensus        84 v~~~l~~l~~~g~~~~i~Sn~~~~~~-~~l~~~~---l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~l~v  155 (187)
T d2fi1a1          84 VSDLLEDISNQGGRHFLVSHRNDQVL-EILEKTS---IAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISSGLVI  155 (187)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCTHHH-HHHHHTT---CGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTCSSEEEE
T ss_pred             hHHHHHHHHhhhccccccccCccchh-hhhhhhc---cccccccccccccccccCCCHHHHHHHHHHcCCCCeEEE
Confidence            356676666788886 5566433211 1000001   11122221 344455689999999999999999997655

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.0048  Score=48.28  Aligned_cols=78  Identities=8%  Similarity=-0.035  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCCCeEEecCCCHHHHHHHHHhcCCceEEEEee
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGGEVRWMGKPDKVVQLLCSLSSSVIILFLIFL  249 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~  249 (251)
                      |......++.+.++|.++ ++||.+.......-...+.+.+...+. ...+....+||+|.+|+.+++++|++|-=++++
T Consensus       129 ~pg~~e~l~~L~~~g~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~KP~p~~~~~~~~~~~~~p~~~l~v  207 (253)
T d1zs9a1         129 FADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVD-GHFDTKIGHKVESESYRKIADSIGCSTNNILFL  207 (253)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBCCGGGCS-EEECGGGCCTTCHHHHHHHHHHHTSCGGGEEEE
T ss_pred             CCCHHHHHHHHhhccCceeecCCCcHHHHHHHHHHcCcchhhhhcc-eeeccccccCCCcHHHHHHHHHhCCCcCcEEEE
Confidence            456677888777888886 667765432210000011111100000 011223468999999999999999976544443

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.49  E-value=0.0072  Score=47.82  Aligned_cols=69  Identities=19%  Similarity=0.197  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      |+....+++.+. ++.++ ++||.+.......-...|   +...++.. +......+||+|.+|+.+++++|++|
T Consensus       111 ~~~~~~~L~~L~-~~~~l~i~Tn~~~~~~~~~l~~~g---l~~~fd~i~~s~~~~~~KP~p~~~~~~~~~~~~~~  181 (247)
T d2gfha1         111 ADDVKAMLTELR-KEVRLLLLTNGDRQTQREKIEACA---CQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQP  181 (247)
T ss_dssp             CHHHHHHHHHHH-TTSEEEEEECSCHHHHHHHHHHHT---CGGGCSEEEEGGGSSSCTTCHHHHHHHHHHHTCCG
T ss_pred             CccHHHHHHHhh-cccceEEeecccchhhhhhhhhcc---ccccccccccccccccchhhhhhHHHHHHHhhcCH
Confidence            356677887755 55665 678866543221000111   11112211 22234568999999999999999875

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.44  E-value=0.013  Score=44.96  Aligned_cols=67  Identities=9%  Similarity=0.039  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      .+..+++.+.++|.++ |+||..... . .  .+..-.+...++.. +.+....+||+|.+|+.++++++++|
T Consensus        86 gv~~~L~~L~~~g~~~~v~Sn~~~~~-~-~--~l~~~gl~~~f~~i~~s~~~~~~Kp~~~~~~~~~~~~~~~p  154 (204)
T d2go7a1          86 GAREVLAWADESGIQQFIYTHKGNNA-F-T--ILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNS  154 (204)
T ss_dssp             THHHHHHHHHHTTCEEEEECSSCTHH-H-H--HHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHHHTCCG
T ss_pred             hHHhhhhcccccccchhhhcccchhh-h-h--hhhhcccccccccccccccccccchhHHHHHHHHHHhCCCC
Confidence            3466777777788886 556633211 0 0  00000011112221 33445678999999999999999865

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=88.98  E-value=0.025  Score=44.89  Aligned_cols=68  Identities=7%  Similarity=0.029  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHH-HH-hCCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKF-EK-LGGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~-~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      .....++.+.++|.++ ++||.+......   .+..-.+...+ .. .+.+....+||+|.+|..+++++|+.|
T Consensus       103 g~~~~L~~Lk~~g~~i~i~Tn~~~~~~~~---~l~~~~l~~~f~d~~~~~d~~~~~KP~p~~~~~~~~~l~~~p  173 (257)
T d1swva_         103 GVKEVIASLRERGIKIGSTTGYTREMMDI---VAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYP  173 (257)
T ss_dssp             THHHHHHHHHHTTCEEEEBCSSCHHHHHH---HHHHHHHTTCCCSCCBCGGGSSCCTTSSHHHHHHHHHHTCCS
T ss_pred             cHHHHHHHHHhcccceeecCCCchhhHHH---HHHHHhhcccccccccccccccccccChHHHHHHHHHhCCCC
Confidence            4466777777889987 666654432210   00000011111 11 122334568999999999999999854

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=88.41  E-value=0.074  Score=39.16  Aligned_cols=67  Identities=9%  Similarity=-0.006  Sum_probs=39.8

Q ss_pred             HHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCce
Q 025564          175 EKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVII  243 (251)
Q Consensus       175 ~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~  243 (251)
                      ......+..+|.++ +++|.........  ....+.+...++.. +.+....+||+|.+|+.+++++|++|
T Consensus        90 ~~l~~~l~~~~~~~~i~t~~~~~~~~~~--~~~~~~l~~~fd~v~~s~~~~~~Kp~~~~~~~~~~~~~~~~  158 (197)
T d2b0ca1          90 IAIMHKLREQGHRVVVLSNTNRLHTTFW--PEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSP  158 (197)
T ss_dssp             HHHHHHHHHTTCEEEEEECCCCCTTSCC--GGGCHHHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCG
T ss_pred             HHHHHHHHhcCCeEEEEeCccHHHHHHH--HHHcccchhhccceeecccccccccchHHHHHHHHhcCCCC
Confidence            44555556677665 4455443322111  22234455555542 33445678999999999999999975

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.97  E-value=0.011  Score=46.28  Aligned_cols=62  Identities=15%  Similarity=0.164  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhCC----Ce------EEecCCCHHHHHHHHHhcCC
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLGG----EV------RWMGKPDKVVQLLCSLSSSV  241 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g~----~~------~~~GKP~~~~~~~a~~~l~~  241 (251)
                      ....+++.+ +++.++ ++||.+.....            ..++..|-    +.      ...+||+|.+|+.+++++|+
T Consensus       104 ~~~~~L~~l-~~~~~i~i~Sn~~~~~~~------------~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~l~~  170 (230)
T d1x42a1         104 EVVEVLKSL-KGKYHVGMITDSDTEYLM------------AHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGV  170 (230)
T ss_dssp             THHHHHHHH-BTTBEEEEEESSCHHHHH------------HHHHHHTCGGGCSEEEEHHHHTBCTTSHHHHHHHHHHHTC
T ss_pred             cHHHHHHHh-hccCceeeeeccccccch------------hhhcccccccccccccccccccccchhhHHHHHHHhhhcc
Confidence            446677764 567777 56775443221            22333221    12      23689999999999999998


Q ss_pred             ce--EEEE
Q 025564          242 II--LFLI  247 (251)
Q Consensus       242 ~~--~~~~  247 (251)
                      +|  +.||
T Consensus       171 ~p~~~l~v  178 (230)
T d1x42a1         171 KGEEAVYV  178 (230)
T ss_dssp             CGGGEEEE
T ss_pred             ccccccee
Confidence            76  5554

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.63  E-value=0.2  Score=34.64  Aligned_cols=80  Identities=10%  Similarity=0.105  Sum_probs=57.9

Q ss_pred             cCChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCccccceee
Q 025564           18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (251)
Q Consensus        18 ~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~~~~~Iit   97 (251)
                      .+.+.+.++..+.+.+++|+-+|-+-+..-+.-..++.+.++++|.++.++. -   ++.+.+.|+..|+... + .++.
T Consensus        30 ~~~l~~~~~~~~~~~iilDls~v~~iDssg~~~L~~~~~~~~~~g~~l~l~~-~---~~~v~~~l~~~gl~~~-~-~i~~  103 (115)
T d1th8b_          30 REQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCA-V---SPAVKRLFDMSGLFKI-I-RVEA  103 (115)
T ss_dssp             HHHHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEES-C---CHHHHHHHHHHTGGGT-S-EEES
T ss_pred             HHHHHHHHhcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEEEE-C---CHHHHHHHHHcCCCce-e-EEeC
Confidence            3445556552357899999999999888888888889999999998866654 2   2346688889999765 3 4666


Q ss_pred             chhhHH
Q 025564           98 SGELTH  103 (251)
Q Consensus        98 s~~~~~  103 (251)
                      +.+.+.
T Consensus       104 ~~~~Al  109 (115)
T d1th8b_         104 DEQFAL  109 (115)
T ss_dssp             SHHHHH
T ss_pred             CHHHHH
Confidence            555443

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=87.07  E-value=0.021  Score=43.90  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .....++.+..++.++ ++||.+......   ....+.+...++.. +......+||+|.+|+.+++++|++|-
T Consensus        97 ~~~~~l~~l~~~~~~~~i~tn~~~~~~~~---~~~~~~~~~~fd~~~~s~~~~~~KP~p~~~~~~~~~~g~~p~  167 (220)
T d1zrna_          97 EVPDSLRELKRRGLKLAILSNGSPQSIDA---VVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRS  167 (220)
T ss_dssp             THHHHHHHHHHTTCEEEEEESSCHHHHHH---HHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGG
T ss_pred             hhHHHHHHHHhcCCeEEeecchHHHHHHH---HHhhccccccccceeeeeeeeccccHHHHHHHHHHHhCCCCc
Confidence            3455666666778765 556654322110   01111111112221 223346689999999999999998864

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=86.40  E-value=0.021  Score=43.87  Aligned_cols=67  Identities=12%  Similarity=0.121  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHh-CCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          174 LEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKL-GGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       174 l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~-g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      ....++.+ +++.++ ++||........   .+..-.+...+... +......+||+|.+|+.+++++|++|-
T Consensus        87 ~~~~L~~l-~~~~~~~ivT~~~~~~~~~---~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~  155 (207)
T d2hdoa1          87 ITSLFEQL-PSELRLGIVTSQRRNELES---GMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQ  155 (207)
T ss_dssp             HHHHHHHS-CTTSEEEEECSSCHHHHHH---HHTTSGGGGGEEEEECGGGSSCCTTSSHHHHHHHHHTTCCGG
T ss_pred             hhhhhhhh-ccccccccccccccccccc---ccccccccccccccccccccccchhhhhhhcccccceeeecc
Confidence            35566664 445554 777755432211   11111111222322 444456789999999999999998754

>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus sphaericus [TaxId: 1421]

Probab=85.51  E-value=0.68  Score=31.67  Aligned_cols=65  Identities=6%  Similarity=0.041  Sum_probs=50.6

Q ss_pred             HHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        22 ~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      .+.++..+++.+++|+.+|=+-+..-+.-..++.+.++++|.++.++.=    +..+.+.|+..|+...
T Consensus        33 ~~~i~~~~~~~vvlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~----~~~v~~~l~~~gl~~~   97 (111)
T d1h4xa_          33 STAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNP----SPTMRKVFQFSGLGPW   97 (111)
T ss_dssp             HHHHHHTSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESC----CHHHHHHHHHTTCGGG
T ss_pred             HHHHhcCCCcEEEEEEECCcccCchHHHHHHHHHHHHHHCCCEEEEecC----CHHHHHHHHHcCCCeE
Confidence            3434323578999999999999998888889999999999998876552    2346788888998754

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=84.88  E-value=0.049  Score=41.87  Aligned_cols=67  Identities=13%  Similarity=0.086  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhCCCcEEE-ccCCccccccCceeeCchHHHHHHHH-hCCCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          173 DLEKILEICASKKIPMVV-ANPDYVTVEARALRVMPGTLASKFEK-LGGEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       173 ~l~~a~~~~~~~g~~li~-~n~D~~~~~~~~~~~~~G~i~~~~~~-~g~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .....++.+..+|.++.. +|.+.....     +..-.+...+.. .+......|||+|.+|+.+++++|++|-
T Consensus        95 g~~~~l~~l~~~~~~i~i~s~~~~~~~~-----l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~l~~~~i~~~  163 (221)
T d1o08a_          95 GILQLLKDLRSNKIKIALASASKNGPFL-----LERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPS  163 (221)
T ss_dssp             THHHHHHHHHHTTCEEEECCSCTTHHHH-----HHHTTCGGGCSEECCTTTSSSCTTSTHHHHHHHHHTTCCGG
T ss_pred             CceeccccccccccceEEEeecchhhHH-----HHhhccccccccccccccccccccChHHHHHHHHHcCCCCc
Confidence            345566666677877644 444322111     000011112222 1344457799999999999999998864

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=83.99  E-value=0.36  Score=37.50  Aligned_cols=22  Identities=9%  Similarity=0.110  Sum_probs=18.4

Q ss_pred             CCCHHHHHHHHHhcCCc--eEEEE
Q 025564          226 KPDKVVQLLCSLSSSVI--ILFLI  247 (251)
Q Consensus       226 KP~~~~~~~a~~~l~~~--~~~~~  247 (251)
                      ||+|.|+..|+++++++  ..+||
T Consensus       129 KP~p~ml~~a~~~~~i~~~~~~~V  152 (209)
T d2o2xa1         129 KPNPGMLVEAGKRLALDLQRSLIV  152 (209)
T ss_dssp             TTSCHHHHHHHHHHTCCGGGCEEE
T ss_pred             cccchhhhHhHHHhCCCccceEEe
Confidence            99999999999999874  45565

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]

Probab=82.86  E-value=0.46  Score=32.42  Aligned_cols=70  Identities=19%  Similarity=0.102  Sum_probs=51.5

Q ss_pred             ccCChHHHhcccCccEEEEeccccccCCCccCccHHHHHHHHHHCCCeEEEEeCCCCCchhHHHHhHhCCCCCc
Q 025564           17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (251)
Q Consensus        17 ~~~~~~~~~~~~~~~~~l~D~DGvL~~g~~~~pGa~e~L~~L~~~G~~v~ivTN~s~~~~~~~~~L~~~Gl~~~   90 (251)
                      ..+.+.+.++....+.+++|+.++=+-...-+.-..++.+.+++.|.++.++. -   +.++.+.|+..|+...
T Consensus        31 ~~~~l~~~~~~~~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~~~~~l~l~~-~---~~~v~~~l~~~gl~~~  100 (110)
T d1vc1a_          31 LKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSS-L---KESISRILKLTHLDKI  100 (110)
T ss_dssp             HHHHHHHHHHHCCCSEEEEEEEECCCBCHHHHHHHHHHHHHHHHTTCEEEEES-C---CHHHHHHHHHHTGGGT
T ss_pred             HHHHHHHHHhcCCCCEEEEEEECCCccCHHHHHHHHHHHHHHHhCCCEEEEEe-C---CHHHHHHHHHcCCCce
Confidence            33445555543367899999999988877777777888899999999876554 2   2457788888998754

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.42  E-value=0.71  Score=33.74  Aligned_cols=69  Identities=10%  Similarity=0.078  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhCCCcE-EEccCCccccccCceeeCchHHHHHHHHhC-----CCeEEecCCCHHHHHHHHHhcCCceE
Q 025564          171 LQDLEKILEICASKKIPM-VVANPDYVTVEARALRVMPGTLASKFEKLG-----GEVRWMGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       171 ~~~l~~a~~~~~~~g~~l-i~~n~D~~~~~~~~~~~~~G~i~~~~~~~g-----~~~~~~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      |.....+++.+.++|.++ |+||......           ....++..+     .......||.|..|..+++++|+++-
T Consensus        48 ~pgv~e~L~~L~~~G~~~~v~S~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~  116 (164)
T d1u7pa_          48 YPEVPEVLGRLQSLGVPVAAASRTSEIQG-----------ANQLLELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFS  116 (164)
T ss_dssp             CTTHHHHHHHHHHTTCCEEEEECCSCHHH-----------HHHHHHHTTCGGGCSEEEESSSCHHHHHHHHHHHHCCCGG
T ss_pred             chHHHHHHHHHHHCCCcEEEEeccccchh-----------hccchhcccccccceeeecccCCChHHHHHHHHHhCCChH
Confidence            456678888888899886 5565433111           112233322     23467889999999999999999876


Q ss_pred             EEEeec
Q 025564          245 FLIFLD  250 (251)
Q Consensus       245 ~~~~~~  250 (251)
                      =+||++
T Consensus       117 ~~l~ig  122 (164)
T d1u7pa_         117 QMVFFD  122 (164)
T ss_dssp             GEEEEE
T ss_pred             HEEEEc
Confidence            666553

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=81.04  E-value=0.28  Score=37.71  Aligned_cols=21  Identities=19%  Similarity=-0.031  Sum_probs=18.7

Q ss_pred             ecCCCHHHHHHHHHhcCCceE
Q 025564          224 MGKPDKVVQLLCSLSSSVIIL  244 (251)
Q Consensus       224 ~GKP~~~~~~~a~~~l~~~~~  244 (251)
                      .+||+|.+|+.+++++|++|-
T Consensus       145 ~~KP~p~~f~~a~~~lg~~p~  165 (245)
T d1qq5a_         145 VFKPHPDSYALVEEVLGVTPA  165 (245)
T ss_dssp             CCTTSHHHHHHHHHHHCCCGG
T ss_pred             ccCccHHHHHHHHHHhCCChh
Confidence            459999999999999999873