Citrus Sinensis ID: 025565

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVEELIDKLKNEARVI
cEEEEEEEccccccccEEEEccccEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEcccEEccccccHHHHHHHHHccccEEEEEEEEEEccccEEEEEEEEcccEEEEEEcccEEEEEccccccccccccHHHHHcccccccccccccccccccccEEEEEEEcccccccEEEEccHHHHHHHHHHHcccc
cEEEEEccEEEcccccccEccccccEccccccEEEcHHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHcccEEEEEEHHccccHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHcccEEEEEEEEEEEccEcEEEEEEEEccEEEEEEEEccEEEEEcHHHcccccccHHHHHHcccccEEEEcHHHHcccccccEEEEEEEccccccccEEcccHHHHHHHHHHccccc
MKIMVAIKRVVDYAVKIRVksdrtgvetnnvkmsmNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGlamgadrgvhveaagqlyPLTVAKILKSLVEVekpgliilgkqaidddcnQTGQMVAGllswpqgtfaskVVLDKEKQLAMVEREVDGgletleldlpavittdlrlnqpryatlpnimkakskpikkytpqelnvdvksdleviqvteppkrkaGVILSSVEELIDKLKNEARVI
mkimvaikrvvdyavkirvksdrtgvetnnvkmsmNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREvdggletleldlpavittdlrlnqpryatlpnimkakskpikkytpqelnvdvksdleviqvteppkrkagvilssveelidklknearvi
MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVEELIDKLKNEARVI
**IMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMK**************NVDVKSDLEVIQV*********VIL*****************
MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEV***************SSVEELIDKLKNEARVI
MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVEELIDKLKNEARVI
MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVEELIDKLKNE****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVEELIDKLKNEARVI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query251 2.2.26 [Sep-21-2011]
Q9LSW8251 Electron transfer flavopr yes no 1.0 1.0 0.804 1e-118
Q7F9U3253 Electron transfer flavopr yes no 0.992 0.984 0.756 1e-110
A2XQV4253 Electron transfer flavopr N/A no 0.992 0.984 0.756 1e-110
Q54YZ4250 Electron transfer flavopr yes no 0.988 0.992 0.636 2e-88
P38117255 Electron transfer flavopr yes no 0.988 0.972 0.637 3e-88
Q5RFK0255 Electron transfer flavopr yes no 0.988 0.972 0.637 9e-88
P53575249 Electron transfer flavopr yes no 0.992 1.0 0.653 3e-87
Q2TBV3255 Electron transfer flavopr yes no 0.988 0.972 0.622 3e-86
Q9DCW4255 Electron transfer flavopr yes no 0.988 0.972 0.618 1e-85
Q6UAQ8255 Electron transfer flavopr yes no 0.988 0.972 0.614 5e-85
>sp|Q9LSW8|ETFB_ARATH Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1 Back     alignment and function desciption
 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/251 (80%), Positives = 228/251 (90%)

Query: 1   MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
           MKI+VA+KRVVDYAVKIRVK D+TGVET NVKMSMNPFCEIALEEALRIKE+G A EV+A
Sbjct: 1   MKILVAVKRVVDYAVKIRVKPDKTGVETQNVKMSMNPFCEIALEEALRIKEAGFAKEVIA 60

Query: 61  VSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAI 120
           VS+GP+QCVDTLRTGLAMGADRG+HVE      PLT+AKILKSL +VE PGLI LGKQAI
Sbjct: 61  VSIGPSQCVDTLRTGLAMGADRGIHVETNSIFLPLTIAKILKSLADVENPGLIFLGKQAI 120

Query: 121 DDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDL 180
           DDDCNQTGQMVA LL WPQ TFASKVVLDK+K +A V+REVDGGLETL +DLPAVITTDL
Sbjct: 121 DDDCNQTGQMVAALLGWPQATFASKVVLDKDKNVATVDREVDGGLETLNVDLPAVITTDL 180

Query: 181 RLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVEEL 240
           RLNQPRYA+LPNIMKAKSKPIKK T Q+L VD+KSD+E+++VTEPPKRK+GV++SSV+EL
Sbjct: 181 RLNQPRYASLPNIMKAKSKPIKKMTVQDLKVDIKSDIEILEVTEPPKRKSGVMVSSVDEL 240

Query: 241 IDKLKNEARVI 251
           IDKLKNEA V+
Sbjct: 241 IDKLKNEAHVV 251
The electron transfer flavoprotein serves as a specific electron acceptor for several dehydrogenases, including five acyl-CoA dehydrogenases, glutaryl-CoA and sarcosine dehydrogenase. It transfers the electrons to the main mitochondrial respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). Involved in leucine catabolism and in phytol degradation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7F9U3|ETFB_ORYSJ Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ETFB PE=3 SV=1 Back     alignment and function description
>sp|A2XQV4|ETFB_ORYSI Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza sativa subsp. indica GN=ETFB PE=3 SV=1 Back     alignment and function description
>sp|Q54YZ4|ETFB_DICDI Electron transfer flavoprotein subunit beta OS=Dictyostelium discoideum GN=etfb PE=3 SV=1 Back     alignment and function description
>sp|P38117|ETFB_HUMAN Electron transfer flavoprotein subunit beta OS=Homo sapiens GN=ETFB PE=1 SV=3 Back     alignment and function description
>sp|Q5RFK0|ETFB_PONAB Electron transfer flavoprotein subunit beta OS=Pongo abelii GN=ETFB PE=2 SV=3 Back     alignment and function description
>sp|P53575|ETFB_BRAJA Electron transfer flavoprotein subunit beta OS=Bradyrhizobium japonicum (strain USDA 110) GN=etfB PE=3 SV=2 Back     alignment and function description
>sp|Q2TBV3|ETFB_BOVIN Electron transfer flavoprotein subunit beta OS=Bos taurus GN=ETFB PE=2 SV=3 Back     alignment and function description
>sp|Q9DCW4|ETFB_MOUSE Electron transfer flavoprotein subunit beta OS=Mus musculus GN=Etfb PE=1 SV=3 Back     alignment and function description
>sp|Q6UAQ8|ETFB_PIG Electron transfer flavoprotein subunit beta OS=Sus scrofa GN=ETFB PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
225433053251 PREDICTED: electron transfer flavoprotei 1.0 1.0 0.880 1e-126
449432564251 PREDICTED: electron transfer flavoprotei 1.0 1.0 0.884 1e-125
118489488251 unknown [Populus trichocarpa x Populus d 1.0 1.0 0.880 1e-125
388495932251 unknown [Lotus japonicus] 1.0 1.0 0.872 1e-125
255576816251 electron transfer flavoprotein beta-subu 1.0 1.0 0.872 1e-124
356535428253 PREDICTED: electron transfer flavoprotei 1.0 0.992 0.852 1e-123
356576466253 PREDICTED: electron transfer flavoprotei 1.0 0.992 0.836 1e-121
388504796251 unknown [Medicago truncatula] 1.0 1.0 0.836 1e-120
297795077251 hypothetical protein ARALYDRAFT_494654 [ 1.0 1.0 0.804 1e-117
21537123251 electron transfer flavoprotein beta-subu 1.0 1.0 0.804 1e-117
>gi|225433053|ref|XP_002284752.1| PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Vitis vinifera] gi|296083620|emb|CBI23609.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/251 (88%), Positives = 243/251 (96%)

Query: 1   MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
           MKIMVAIKRVVDYAVKIRVKSD++GVET+NVKMSMNPFCEI LEEALRIKESGLASEV+A
Sbjct: 1   MKIMVAIKRVVDYAVKIRVKSDKSGVETSNVKMSMNPFCEIGLEEALRIKESGLASEVIA 60

Query: 61  VSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAI 120
           VS+GP+QCVDTLRTGLAMGADR +HVEA+  LYPL+VAK+LK+LV+VEKPGL+ILGKQAI
Sbjct: 61  VSVGPSQCVDTLRTGLAMGADRAIHVEASATLYPLSVAKLLKALVDVEKPGLLILGKQAI 120

Query: 121 DDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDL 180
           DDDCNQTGQMVAGLL+WPQGTFASKVVLDKEK++A VEREVDGGLETL LDLPAVITTDL
Sbjct: 121 DDDCNQTGQMVAGLLNWPQGTFASKVVLDKEKEVATVEREVDGGLETLCLDLPAVITTDL 180

Query: 181 RLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVEEL 240
           RLNQPRYATLPNIMKAKSK IKK+TPQELNVD+KSDLEV+QVTEPPKRKAGVI+SSV+EL
Sbjct: 181 RLNQPRYATLPNIMKAKSKVIKKFTPQELNVDIKSDLEVVQVTEPPKRKAGVIVSSVDEL 240

Query: 241 IDKLKNEARVI 251
           ID+LKNEA VI
Sbjct: 241 IDQLKNEAHVI 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449432564|ref|XP_004134069.1| PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial-like [Cucumis sativus] gi|449525930|ref|XP_004169969.1| PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118489488|gb|ABK96546.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|388495932|gb|AFK36032.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255576816|ref|XP_002529294.1| electron transfer flavoprotein beta-subunit, putative [Ricinus communis] gi|223531218|gb|EEF33063.1| electron transfer flavoprotein beta-subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356535428|ref|XP_003536247.1| PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|356576466|ref|XP_003556352.1| PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|388504796|gb|AFK40464.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297795077|ref|XP_002865423.1| hypothetical protein ARALYDRAFT_494654 [Arabidopsis lyrata subsp. lyrata] gi|297311258|gb|EFH41682.1| hypothetical protein ARALYDRAFT_494654 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21537123|gb|AAM61464.1| electron transfer flavoprotein beta-subunit-like [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
TAIR|locus:2176446251 ETFBETA "electron transfer fla 1.0 1.0 0.804 4e-106
UNIPROTKB|P38117255 ETFB "Electron transfer flavop 0.988 0.972 0.637 3.2e-81
DICTYBASE|DDB_G0277991250 etfb "electron transfer flavop 0.988 0.992 0.636 8.5e-81
UNIPROTKB|Q2TBV3255 ETFB "Electron transfer flavop 0.988 0.972 0.622 3.3e-79
UNIPROTKB|E2QYD2380 ETFB "Uncharacterized protein" 0.988 0.652 0.614 5.4e-79
MGI|MGI:106098255 Etfb "electron transferring fl 0.988 0.972 0.618 6.8e-79
ZFIN|ZDB-GENE-040426-1931254 etfb "electron-transfer-flavop 0.984 0.972 0.628 1.4e-78
RGD|1303312255 Etfb "electron-transfer-flavop 0.988 0.972 0.614 2.3e-78
UNIPROTKB|Q6UAQ8255 ETFB "Electron transfer flavop 0.988 0.972 0.614 4.8e-78
UNIPROTKB|Q4KFP4249 etfB "Electron transfer flavop 0.992 1.0 0.597 1.3e-75
TAIR|locus:2176446 ETFBETA "electron transfer flavoprotein beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 202/251 (80%), Positives = 228/251 (90%)

Query:     1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
             MKI+VA+KRVVDYAVKIRVK D+TGVET NVKMSMNPFCEIALEEALRIKE+G A EV+A
Sbjct:     1 MKILVAVKRVVDYAVKIRVKPDKTGVETQNVKMSMNPFCEIALEEALRIKEAGFAKEVIA 60

Query:    61 VSMGPAQCVDTLRTGLAMGADRGVHVEAAGQLYPLTVAKILKSLVEVEKPGLIILGKQAI 120
             VS+GP+QCVDTLRTGLAMGADRG+HVE      PLT+AKILKSL +VE PGLI LGKQAI
Sbjct:    61 VSIGPSQCVDTLRTGLAMGADRGIHVETNSIFLPLTIAKILKSLADVENPGLIFLGKQAI 120

Query:   121 DDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITTDL 180
             DDDCNQTGQMVA LL WPQ TFASKVVLDK+K +A V+REVDGGLETL +DLPAVITTDL
Sbjct:   121 DDDCNQTGQMVAALLGWPQATFASKVVLDKDKNVATVDREVDGGLETLNVDLPAVITTDL 180

Query:   181 RLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSSVEEL 240
             RLNQPRYA+LPNIMKAKSKPIKK T Q+L VD+KSD+E+++VTEPPKRK+GV++SSV+EL
Sbjct:   181 RLNQPRYASLPNIMKAKSKPIKKMTVQDLKVDIKSDIEILEVTEPPKRKSGVMVSSVDEL 240

Query:   241 IDKLKNEARVI 251
             IDKLKNEA V+
Sbjct:   241 IDKLKNEAHVV 251
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0009055 "electron carrier activity" evidence=IEA
GO:0006552 "leucine catabolic process" evidence=IMP
GO:0015996 "chlorophyll catabolic process" evidence=IMP
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
UNIPROTKB|P38117 ETFB "Electron transfer flavoprotein subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277991 etfb "electron transfer flavoprotein beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBV3 ETFB "Electron transfer flavoprotein subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYD2 ETFB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:106098 Etfb "electron transferring flavoprotein, beta polypeptide" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1931 etfb "electron-transfer-flavoprotein, beta polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1303312 Etfb "electron-transfer-flavoprotein, beta polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6UAQ8 ETFB "Electron transfer flavoprotein subunit beta" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KFP4 etfB "Electron transfer flavoprotein, beta subunit" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q68FU3ETFB_RATNo assigned EC number0.61410.98800.9725yesno
Q6UAQ8ETFB_PIGNo assigned EC number0.61410.98800.9725yesno
P52040ETFB_CLOABNo assigned EC number0.32240.82860.8030yesno
Q54YZ4ETFB_DICDINo assigned EC number0.6360.98800.992yesno
P38117ETFB_HUMANNo assigned EC number0.63770.98800.9725yesno
Q9HZP6ETFB_PSEAENo assigned EC number0.59360.99201.0yesno
Q2TBV3ETFB_BOVINNo assigned EC number0.62200.98800.9725yesno
P42940ETFB_YEASTNo assigned EC number0.49010.95610.9195yesno
P97089ETFB_THETCNo assigned EC number0.33200.96810.9346yesno
Q7F9U3ETFB_ORYSJNo assigned EC number0.75680.99200.9841yesno
Q9LSW8ETFB_ARATHNo assigned EC number0.80471.01.0yesno
A2XQV4ETFB_ORYSINo assigned EC number0.75680.99200.9841N/Ano
P94550ETFB_BACSUNo assigned EC number0.31290.98000.9571yesno
Q9DCW4ETFB_MOUSENo assigned EC number0.61810.98800.9725yesno
P38975ETFB_PARDENo assigned EC number0.58430.98800.9841yesno
P53575ETFB_BRAJANo assigned EC number0.65330.99201.0yesno
Q9UTH2ETFB_SCHPONo assigned EC number0.44750.96810.9566yesno
O85691ETFB_MEGELNo assigned EC number0.33460.91230.8481yesno
Q5RFK0ETFB_PONABNo assigned EC number0.63770.98800.9725yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020216001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (251 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00027378001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (347 aa)
••••••• 0.999
GSVIVG00010287001
SubName- Full=Chromosome chr5 scaffold_253, whole genome shotgun sequence; (536 aa)
• •• •• 0.987
GSVIVG00024504001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (403 aa)
• ••  • 0.954
GSVIVG00027718001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (296 aa)
•  •  • 0.853
GSVIVG00023836001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (316 aa)
•     • 0.790
GSVIVG00004614001
SubName- Full=Chromosome undetermined scaffold_752, whole genome shotgun sequence; (229 aa)
•  •  • 0.726
GSVIVG00028552001
SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_44, whole genome shotg [...] (423 aa)
•  •  • 0.688
GSVIVG00025731001
SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (475 aa)
   •  • 0.661
GSVIVG00038876001
SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa)
•  •  • 0.645
nad9
SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence;; Core subunit [...] (190 aa)
   •  • 0.642

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
COG2086260 COG2086, FixA, Electron transfer flavoprotein, bet 7e-94
cd01714202 cd01714, ETF_beta, The electron transfer flavoprot 3e-87
smart00893185 smart00893, ETF, Electron transfer flavoprotein do 4e-46
cd01985181 cd01985, ETF, The electron transfer flavoprotein ( 3e-42
pfam01012160 pfam01012, ETF, Electron transfer flavoprotein dom 5e-26
PRK12342254 PRK12342, PRK12342, hypothetical protein; Provisio 8e-15
PRK03359256 PRK03359, PRK03359, putative electron transfer fla 2e-14
>gnl|CDD|224997 COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information 
 Score =  276 bits (707), Expect = 7e-94
 Identities = 122/261 (46%), Positives = 169/261 (64%), Gaps = 11/261 (4%)

Query: 1   MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
           MKI+V IK+VVD   KIRV  D   ++ + V +S+NPF   A+EEALR+KE G   EV  
Sbjct: 1   MKILVLIKKVVDDESKIRVDPDTGTLDRSGVPLSINPFDLNAVEEALRLKEKGYGGEVTV 60

Query: 61  VSMGPAQCVDTLRTGLAMGADRGVHVE--AAGQLYPLTVAKILKSLVEVEKPGLIILGKQ 118
           ++MGP Q  + LR  LAMGADR + +   A     PL  AK L + V+   P L++ GKQ
Sbjct: 61  LTMGPPQAEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQ 120

Query: 119 AIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVITT 178
           AID D  Q G ++A LL WPQ T+ SK+ +    ++  VERE++GGLET+E  LPAV+T 
Sbjct: 121 AIDGDTGQVGPLLAELLGWPQVTYVSKIEIVDGGKVT-VERELEGGLETVEAPLPAVVTV 179

Query: 179 DLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVK---SDLEVIQVTEPPKRKAGVILS 235
           DLR+N+PRY +LP IM AK KP+KK++  +L ++V    S L+V++VT PP+RKAGV + 
Sbjct: 180 DLRINEPRYPSLPGIMAAKKKPVKKWSLADLGLNVGLAGSPLKVVKVTPPPERKAGVKVK 239

Query: 236 S-----VEELIDKLKNEARVI 251
                   EL++KLK E  ++
Sbjct: 240 DGPEEIAAELVEKLKEEGVIL 260

Length = 260
>gnl|CDD|238847 cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>gnl|CDD|214890 smart00893, ETF, Electron transfer flavoprotein domain Back     alignment and domain information
>gnl|CDD|238943 cd01985, ETF, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>gnl|CDD|216243 pfam01012, ETF, Electron transfer flavoprotein domain Back     alignment and domain information
>gnl|CDD|183455 PRK12342, PRK12342, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|179569 PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 251
PRK03359256 putative electron transfer flavoprotein FixA; Revi 100.0
PRK12342254 hypothetical protein; Provisional 100.0
COG2086260 FixA Electron transfer flavoprotein, beta subunit 100.0
KOG3180254 consensus Electron transfer flavoprotein, beta sub 100.0
cd01714202 ETF_beta The electron transfer flavoprotein (ETF) 100.0
cd01985181 ETF The electron transfer flavoprotein (ETF) serve 100.0
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 99.97
cd01715168 ETF_alpha The electron transfer flavoprotein (ETF) 99.91
PLN00022 356 electron transfer flavoprotein subunit alpha; Prov 99.85
PRK03363313 fixB putative electron transfer flavoprotein FixB; 99.81
PRK11916312 electron transfer flavoprotein subunit YdiR; Provi 99.8
COG2025313 FixB Electron transfer flavoprotein, alpha subunit 99.8
KOG3954336 consensus Electron transfer flavoprotein, alpha su 99.23
cd00293130 USP_Like Usp: Universal stress protein family. The 96.24
cd01987124 USP_OKCHK USP domain is located between the N-term 95.55
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 95.53
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 94.6
PF00582140 Usp: Universal stress protein family; InterPro: IP 92.8
PRK15118144 universal stress global response regulator UspA; P 92.7
PRK10116142 universal stress protein UspC; Provisional 92.14
PRK15005144 universal stress protein F; Provisional 91.32
PRK09982142 universal stress protein UspD; Provisional 91.15
PRK15456142 universal stress protein UspG; Provisional 91.06
PF07355 349 GRDB: Glycine/sarcosine/betaine reductase selenopr 90.36
PRK07199301 phosphoribosylpyrophosphate synthetase; Provisiona 89.99
PRK11175305 universal stress protein UspE; Provisional 89.85
PRK02269320 ribose-phosphate pyrophosphokinase; Provisional 88.91
PRK10481224 hypothetical protein; Provisional 88.87
TIGR01918 431 various_sel_PB selenoprotein B, glycine/betaine/sa 88.74
PRK03092304 ribose-phosphate pyrophosphokinase; Provisional 88.28
KOG0081219 consensus GTPase Rab27, small G protein superfamil 88.11
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 87.48
PF07287362 DUF1446: Protein of unknown function (DUF1446); In 87.24
PRK11175305 universal stress protein UspE; Provisional 87.13
TIGR01917 431 gly_red_sel_B glycine reductase, selenoprotein B. 87.09
PRK01259309 ribose-phosphate pyrophosphokinase; Provisional 87.09
TIGR01860461 VNFD nitrogenase vanadium-iron protein, alpha chai 86.83
COG0299200 PurN Folate-dependent phosphoribosylglycinamide fo 86.34
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 86.12
TIGR01284457 alt_nitrog_alph nitrogenase alpha chain. This mode 86.03
PF02585128 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR0037 85.85
PRK10490 895 sensor protein KdpD; Provisional 85.84
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 85.59
PLN03159832 cation/H(+) antiporter 15; Provisional 85.54
PRK02458323 ribose-phosphate pyrophosphokinase; Provisional 84.26
cd07941273 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 83.31
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 83.18
cd03466429 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup 82.74
PRK02910519 light-independent protochlorophyllide reductase su 82.61
cd01977415 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: 82.07
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 81.92
CHL00076513 chlB photochlorophyllide reductase subunit B 81.88
TIGR01278511 DPOR_BchB light-independent protochlorophyllide re 81.13
COG1922253 WecG Teichoic acid biosynthesis proteins [Cell env 80.98
PF04007 335 DUF354: Protein of unknown function (DUF354); Inte 80.78
TIGR01251308 ribP_PPkin ribose-phosphate pyrophosphokinase. In 80.63
PF00731150 AIRC: AIR carboxylase; InterPro: IPR000031 Phospho 80.28
TIGR03446283 mycothiol_Mca mycothiol conjugate amidase Mca. Myc 80.21
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1e-65  Score=452.51  Aligned_cols=244  Identities=25%  Similarity=0.368  Sum_probs=227.4

Q ss_pred             CeEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhH--HHHHHHHHC
Q 025565            1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCV--DTLRTGLAM   78 (251)
Q Consensus         1 M~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~--~~l~~~la~   78 (251)
                      |||+||+|||||+. ++++++.+++++|++++++|||||++|||+|+||+|++.|++|++++|||++++  ..+|+|++|
T Consensus         1 M~IvVcvKqVPD~~-~~~~~~~~~~l~r~~~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAm   79 (256)
T PRK03359          1 MKIITCYKCVPDEQ-DIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSR   79 (256)
T ss_pred             CEEEEEEEECcCCc-ceEEeCCCCeEEcCCCccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHc
Confidence            99999999999986 899998888999999999999999999999999999843479999999998865  679999999


Q ss_pred             CCCEEEEEeeCC--CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEE-EecCCCeE
Q 025565           79 GADRGVHVEAAG--QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVV-LDKEKQLA  155 (251)
Q Consensus        79 GaD~vi~v~~~~--~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~-~~~~~~~l  155 (251)
                      |||++|+++|+.  ..|++++|++||+++++.+|||||||.+|+|++++|+||+||++||||++|+|.+++ ++  ++.+
T Consensus        80 GaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l~~~~--~~~v  157 (256)
T PRK03359         80 GPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKIISLT--DDTL  157 (256)
T ss_pred             CCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEEEEec--CCEE
Confidence            999999999774  579999999999999999999999999999999999999999999999999999994 67  8899


Q ss_pred             EEEEEeCCeEEEEEECCCEEEEEeCCCCCCCCCChHHHHHhcCCCceeecCCccCCCCCCCeEEEEEeCCCCCcCeeEe-
Q 025565          156 MVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVIL-  234 (251)
Q Consensus       156 ~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l~~i~~A~k~~i~~~~~~dl~~~~~~~~~v~~~~~p~~~~~~~~~-  234 (251)
                      +++|..++|.+++++++|+|+||..++|+||||||++||+|+||||++|+++|||+++.+++++.++++|+.++++.++ 
T Consensus       158 ~v~r~~e~g~e~ve~~lPavvtV~~~~n~PR~psl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~~~~~~p~~~~~~~~i~  237 (256)
T PRK03359        158 TVERELEDEVETLSIPLPAVIAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEPAWSEQQVAAPKQRERQRIVI  237 (256)
T ss_pred             EEEEEcCCeEEEEEEcCCEEEEEeCCCCCCCCCCHHHHHHhcCCCceEeCHHHcCCCcCCCcEEEEEecCCCCcCcEEEe
Confidence            9999999999999999999999999999999999999999999999999999999986678888899999988778775 


Q ss_pred             c-----hHHHHHHHhhhc
Q 025565          235 S-----SVEELIDKLKNE  247 (251)
Q Consensus       235 e-----~~~~l~~~L~~~  247 (251)
                      +     .+++|++.|+++
T Consensus       238 ~g~~~e~a~~lv~~L~~~  255 (256)
T PRK03359        238 EGDGEEQIAAFAENLRKI  255 (256)
T ss_pred             cCCcHHHHHHHHHHHHhh
Confidence            4     378999999874

>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional Back     alignment and domain information
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional Back     alignment and domain information
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional Back     alignment and domain information
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion] Back     alignment and domain information
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion] Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others Back     alignment and domain information
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional Back     alignment and domain information
>PRK10481 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family Back     alignment and domain information
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional Back     alignment and domain information
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B Back     alignment and domain information
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional Back     alignment and domain information
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain Back     alignment and domain information
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain Back     alignment and domain information
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3 Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional Back     alignment and domain information
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE Back     alignment and domain information
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional Back     alignment and domain information
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>CHL00076 chlB photochlorophyllide reductase subunit B Back     alignment and domain information
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit Back     alignment and domain information
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase Back     alignment and domain information
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE Back     alignment and domain information
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
1efv_B255 Three-Dimensional Structure Of Human Electron Trans 3e-89
2a1t_S255 Structure Of The Human Mcad:etf E165betaa Complex L 1e-88
1efp_B252 Electron Transfer Flavoprotein (Etf) From Paracoccu 7e-76
1o94_C264 Ternary Complex Between Trimethylamine Dehydrogenas 4e-26
>pdb|1EFV|B Chain B, Three-Dimensional Structure Of Human Electron Transfer Flavoprotein To 2.1 A Resolution Length = 255 Back     alignment and structure 
Iteration: 1

 Score =  324 bits (831), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 162/254 (63%), Positives = 197/254 (77%), Gaps = 6/254 (2%)
Query: 1   MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
           ++++VA+KRV+DYAVKIRVK DRTGV T+ VK SMNPFCEIA+EEA+R+KE  L  EV+A
Sbjct: 4   LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIA 63
Query: 61  VSMGPAQCVDTLRTGLAMGADRGVHVEA----AGQLYPLTVAKILKSLVEVEKPGLIILG 116
           VS GPAQC +T+RT LAMGADRG+HVE     A +L PL VA++L  L E EK  L++LG
Sbjct: 64  VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLG 123
Query: 117 KQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVI 176
           KQAIDDDCNQTGQM AG L WPQGTFAS+V L+ +K    VERE+DGGLETL L LPAV+
Sbjct: 124 KQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--LKVEREIDGGLETLRLKLPAVV 181
Query: 177 TTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSS 236
           T DLRLN+PRYATLPNIMKAK K I+   P +L VD+ S L VI V +PP+R AGV + +
Sbjct: 182 TADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVET 241
Query: 237 VEELIDKLKNEARV 250
            E+L+ KLK   R+
Sbjct: 242 TEDLVAKLKEIGRI 255
>pdb|2A1T|S Chain S, Structure Of The Human Mcad:etf E165betaa Complex Length = 255 Back     alignment and structure
>pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) From Paracoccus Denitrificans Length = 252 Back     alignment and structure
>pdb|1O94|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And Electron Transferring Flavoprotein Length = 264 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
1efv_B255 Electron transfer flavoprotein; electron transport 1e-140
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 1e-137
1o97_C264 Electron transferring flavoprotein beta-subunit; F 1e-133
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Length = 255 Back     alignment and structure
 Score =  392 bits (1010), Expect = e-140
 Identities = 162/254 (63%), Positives = 197/254 (77%), Gaps = 6/254 (2%)

Query: 1   MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
           ++++VA+KRV+DYAVKIRVK DRTGV T+ VK SMNPFCEIA+EEA+R+KE  L  EV+A
Sbjct: 4   LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIA 63

Query: 61  VSMGPAQCVDTLRTGLAMGADRGVHVE----AAGQLYPLTVAKILKSLVEVEKPGLIILG 116
           VS GPAQC +T+RT LAMGADRG+HVE     A +L PL VA++L  L E EK  L++LG
Sbjct: 64  VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLG 123

Query: 117 KQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVI 176
           KQAIDDDCNQTGQM AG L WPQGTFAS+V L+ +K    VERE+DGGLETL L LPAV+
Sbjct: 124 KQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--LKVEREIDGGLETLRLKLPAVV 181

Query: 177 TTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSS 236
           T DLRLN+PRYATLPNIMKAK K I+   P +L VD+ S L VI V +PP+R AGV + +
Sbjct: 182 TADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVET 241

Query: 237 VEELIDKLKNEARV 250
            E+L+ KLK   R+
Sbjct: 242 TEDLVAKLKEIGRI 255
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Length = 252 Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Length = 264 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query251
1efv_B255 Electron transfer flavoprotein; electron transport 100.0
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 100.0
1o97_C264 Electron transferring flavoprotein beta-subunit; F 100.0
3ih5_A217 Electron transfer flavoprotein alpha-subunit; alph 99.96
1o97_D320 Electron transferring flavoprotein alpha-subunit; 99.95
1efv_A315 Electron transfer flavoprotein; electron transport 99.94
1efp_A307 ETF, protein (electron transfer flavoprotein); ele 99.93
3fet_A166 Electron transfer flavoprotein subunit alpha RELA 99.9
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 96.54
3dlo_A155 Universal stress protein; unknown function, struct 96.1
3fg9_A156 Protein of universal stress protein USPA family; A 95.92
2z08_A137 Universal stress protein family; uncharacterized c 95.8
3s3t_A146 Nucleotide-binding protein, universal stress PROT 95.75
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 95.58
3tnj_A150 Universal stress protein (USP); structural genomic 95.29
3fdx_A143 Putative filament protein / universal stress PROT; 95.13
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 94.8
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 94.37
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 94.31
3loq_A294 Universal stress protein; structural genomics, PSI 94.19
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 93.87
3mt0_A290 Uncharacterized protein PA1789; structural genomic 93.72
1q77_A138 Hypothetical protein AQ_178; structural genomics, 92.77
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 91.37
3mt0_A290 Uncharacterized protein PA1789; structural genomic 91.2
3olq_A319 Universal stress protein E; structural genomics, P 91.11
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 90.49
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 90.42
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 88.54
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 88.53
2ixd_A242 LMBE-related protein; hexamer, deacetylase, rossma 88.47
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 87.95
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 87.72
1uan_A227 Hypothetical protein TT1542; rossmann-like, struct 87.24
3u7q_B523 Nitrogenase molybdenum-iron protein beta chain; mu 85.75
3olq_A319 Universal stress protein E; structural genomics, P 85.74
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 85.66
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 84.39
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 84.21
3loq_A294 Universal stress protein; structural genomics, PSI 83.7
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 82.63
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 81.56
1o4v_A183 Phosphoribosylaminoimidazole mutase PURE; structur 81.08
2xdq_B511 Light-independent protochlorophyllide reductase S; 80.51
3ble_A337 Citramalate synthase from leptospira interrogans; 80.4
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Back     alignment and structure
Probab=100.00  E-value=1e-64  Score=446.14  Aligned_cols=246  Identities=65%  Similarity=1.015  Sum_probs=234.7

Q ss_pred             CeEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCc--eEEEEeeCCchhHHHHHHHHHC
Q 025565            1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLAS--EVVAVSMGPAQCVDTLRTGLAM   78 (251)
Q Consensus         1 M~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~--~V~al~~G~~~~~~~l~~~la~   78 (251)
                      |||+||+|||||+..++++++++++++|++++++|||+|++|||+|++|+|+  |+  +|++++||++.+++.++++++|
T Consensus         4 M~I~V~vK~Vpd~~~~~~~~~~~~~~~~~~~~~~lnp~d~~Ale~A~~Lke~--g~~~~V~av~~G~~~a~~~lr~ala~   81 (255)
T 1efv_B            4 LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEK--KLVKEVIAVSCGPAQCQETIRTALAM   81 (255)
T ss_dssp             CEEEEECCEEECTTSCCCBCTTSSSBCCTTCCEEECHHHHHHHHHHHHHHHT--TSCSEEEEEEEESTTHHHHHHHHHHH
T ss_pred             CEEEEEEeEccCCCceeEEcCCCCeEEccCCCccCCHHHHHHHHHHHHHHhc--CCCceEEEEEeCChhHHHHHHHHHhc
Confidence            8999999999998878999988877999999999999999999999999996  55  9999999997788999999999


Q ss_pred             CCCEEEEEe-eC---CCCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCe
Q 025565           79 GADRGVHVE-AA---GQLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQL  154 (251)
Q Consensus        79 GaD~vi~v~-~~---~~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~  154 (251)
                      |||++|+++ ++   ..+++++||++|++++++.+||+||||.++.|++++|++||||++||||++|+|++++++  ++.
T Consensus        82 GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~l~~~--~~~  159 (255)
T 1efv_B           82 GADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLE--GDK  159 (255)
T ss_dssp             TCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEEEE--TTE
T ss_pred             CCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEEEEEc--CCe
Confidence            999999998 65   478999999999999999999999999999999999999999999999999999999998  899


Q ss_pred             EEEEEEeCCeEEEEEECCCEEEEEeCCCCCCCCCChHHHHHhcCCCceeecCCccCCCCCCCeEEEEEeCCCCCcCeeEe
Q 025565          155 AMVEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVIL  234 (251)
Q Consensus       155 l~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l~~i~~A~k~~i~~~~~~dl~~~~~~~~~v~~~~~p~~~~~~~~~  234 (251)
                      ++++|+.|+|.+++++++|+|+|+++++|+||||+|++||+|+||||++|+++|||++..|++++.++++|++|+.++++
T Consensus       160 ~~v~R~i~gG~~~v~~~~P~VvTv~~~~~~pR~~sl~~im~A~kk~i~~~~~~dl~~~~~~~~~v~~~~~p~~~~~~~~i  239 (255)
T 1efv_B          160 LKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKV  239 (255)
T ss_dssp             EEEEEEETTEEEEEEEESSEEEEECGGGCCCCCCCHHHHHHTTTSCEEEECHHHHTCCCCCSEEEEEEECCCCCCCCEEC
T ss_pred             EEEEEEcCCcEEEEEECCCEEEEEeCCCCCcCCCCHHHHHHhccCCeeEecHHHcCCCCCCCeEEEEEecCCCCcCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999988899999999999988889999


Q ss_pred             chHHHHHHHhhhcCCc
Q 025565          235 SSVEELIDKLKNEARV  250 (251)
Q Consensus       235 e~~~~l~~~L~~~~~~  250 (251)
                      ++.++|+++|++++.+
T Consensus       240 ~~~~~l~~~L~~~~~~  255 (255)
T 1efv_B          240 ETTEDLVAKLKEIGRI  255 (255)
T ss_dssp             SSHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhcCC
Confidence            9999999999998864
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Back     alignment and structure
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* Back     alignment and structure
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* Back     alignment and structure
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2 Back     alignment and structure
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1 Back     alignment and structure
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Back     alignment and structure
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Back     alignment and structure
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus} Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 251
d1efvb_252 c.26.2.3 (B:) Small, beta subunit of electron tran 2e-84
d1efpb_246 c.26.2.3 (B:) Small, beta subunit of electron tran 2e-83
d3clsc1262 c.26.2.3 (C:1-262) Small, beta subunit of electron 7e-68
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  250 bits (639), Expect = 2e-84
 Identities = 161/254 (63%), Positives = 196/254 (77%), Gaps = 6/254 (2%)

Query: 1   MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVA 60
           ++++VA+KRV+DYAVKIRVK DRTGV T+ VK SMNPFCEIA+EEA+R+KE  L  EV+A
Sbjct: 1   LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIA 60

Query: 61  VSMGPAQCVDTLRTGLAMGADRGVHVEAAG----QLYPLTVAKILKSLVEVEKPGLIILG 116
           VS GPAQC +T+RT LAMGADRG+HVE       +L PL VA++L  L E EK  L++LG
Sbjct: 61  VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLG 120

Query: 117 KQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAMVEREVDGGLETLELDLPAVI 176
           KQAIDDDCNQTGQM AG L WPQGTFAS+V L+ +K    VERE+DGGLETL L LPAV+
Sbjct: 121 KQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDK--LKVEREIDGGLETLRLKLPAVV 178

Query: 177 TTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSS 236
           T DLRLN+PRYATLPNIMKAK K I+   P +L VD+ S L VI V +PP+R AGV + +
Sbjct: 179 TADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVET 238

Query: 237 VEELIDKLKNEARV 250
            E+L+ KLK   R+
Sbjct: 239 TEDLVAKLKEIGRI 252
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Length = 246 Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query251
d1efvb_252 Small, beta subunit of electron transfer flavoprot 100.0
d1efpb_246 Small, beta subunit of electron transfer flavoprot 100.0
d3clsc1262 Small, beta subunit of electron transfer flavoprot 100.0
d3clsd1192 Large, alpha subunit of electron transfer flavopro 99.94
d1efva1188 Large, alpha subunit of electron transfer flavopro 99.85
d1efpa1183 Large, alpha subunit of electron transfer flavopro 99.73
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 94.75
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 94.35
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 94.31
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 93.93
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 90.69
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 88.57
d1rqba2303 Transcarboxylase 5S subunit, N-terminal domain {Pr 88.29
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 86.03
d1gu7a2189 2,4-dienoyl-CoA reductase {Yeast (Candida tropical 85.65
d1uana_227 Hypothetical protein TT1542 {Thermus thermophilus 85.34
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 84.83
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 83.17
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 83.0
d1a9xa3127 Carbamoyl phosphate synthetase (CPS), large subuni 82.51
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-68  Score=466.03  Aligned_cols=248  Identities=65%  Similarity=1.013  Sum_probs=237.6

Q ss_pred             CeEEEEEEeeccCCCceEEecCCCeEEccCCccCCCHHhHHHHHHHHHhhhhCCCceEEEEeeCCchhHHHHHHHHHCCC
Q 025565            1 MKIMVAIKRVVDYAVKIRVKSDRTGVETNNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPAQCVDTLRTGLAMGA   80 (251)
Q Consensus         1 M~IvV~~K~Vpd~~~~~~~~~~~~~~~~~~~~~~in~~d~~Ale~A~~lae~~~g~~V~al~~G~~~~~~~l~~~la~Ga   80 (251)
                      |||+||+|||||++.+++++++++++++++++++|||||++|||+|+||+|++.|..|++++|||+.+++.+|++++||+
T Consensus         1 M~I~VcvKqVPD~~~~i~i~~~~~~l~~~~~~~~iNp~D~~AlE~Al~lke~~gg~~v~v~~~gp~~a~~~lr~ala~Ga   80 (252)
T d1efvb_           1 LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGA   80 (252)
T ss_dssp             CEEEEECCEEECTTSCCCBCTTSSSBCCTTCCEEECHHHHHHHHHHHHHHHTTSCSEEEEEEEESTTHHHHHHHHHHHTC
T ss_pred             CEEEEEEEecCCCCCceEEcCCCCeEEecCCccccCcccHHHHHHHHHHhhhcCCceEEEEEecchhHHHHHHHHHhcCC
Confidence            99999999999998789999999899999999999999999999999999984455799999999999999999999999


Q ss_pred             CEEEEEeeCC----CCCHHHHHHHHHHHHHHhCCCEEEEcceeecCCcCcHHHHHHHHcCCCcccceeeEEEecCCCeEE
Q 025565           81 DRGVHVEAAG----QLYPLTVAKILKSLVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLSWPQGTFASKVVLDKEKQLAM  156 (251)
Q Consensus        81 D~vi~v~~~~----~~d~~a~a~~La~~ik~~~~dlIl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~l~  156 (251)
                      |++++++++.    ..|+.+++.++++++++.+|||||||.+|+|++++|+|++||++||||++|+|.+++++  ++.++
T Consensus        81 d~avli~~~~~~~~~~~~~~~a~~~a~~~~~~~~DLIl~G~~s~D~~tgqVg~~lAe~Lg~P~vt~v~~i~~~--~~~i~  158 (252)
T d1efvb_          81 DRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLE--GDKLK  158 (252)
T ss_dssp             SEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEEEE--TTEEE
T ss_pred             cceEEEEecccccccccHHHHHHHHHHHHhccCCCEEEEeccchhccCCcHHHHHHHhcCCCceeEEEEEEEE--CCEEE
Confidence            9999998653    46899999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             EEEEeCCeEEEEEECCCEEEEEeCCCCCCCCCChHHHHHhcCCCceeecCCccCCCCCCCeEEEEEeCCCCCcCeeEech
Q 025565          157 VEREVDGGLETLELDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKYTPQELNVDVKSDLEVIQVTEPPKRKAGVILSS  236 (251)
Q Consensus       157 ~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p~l~~i~~A~k~~i~~~~~~dl~~~~~~~~~v~~~~~p~~~~~~~~~e~  236 (251)
                      ++|..++|.+++++++|||+||.++.|+||||+|+++|+|+||+|++|+++|||++..|++++.++++|+.|++++++|+
T Consensus       159 v~R~~e~g~e~ve~~lPavitv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~~~~s~~~v~~~~~p~~~~~g~~ie~  238 (252)
T d1efvb_         159 VEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVET  238 (252)
T ss_dssp             EEEEETTEEEEEEEESSEEEEECGGGCCCCCCCHHHHHHTTTSCEEEECHHHHTCCCCCSEEEEEEECCCCCCCCEECSS
T ss_pred             EEEEcCCcEEEEEecCCEEEEeecCcCccCccchhhHHHhccCCcEEeCHHHcCCCcCCCcEEEEEEcCCCCCCCeEeeC
Confidence            99999999999999999999999999999999999999999999999999999999899999999999999999999999


Q ss_pred             HHHHHHHhhhcCCc
Q 025565          237 VEELIDKLKNEARV  250 (251)
Q Consensus       237 ~~~l~~~L~~~~~~  250 (251)
                      +++|+++|+++|+|
T Consensus       239 ~~~lv~~L~e~g~i  252 (252)
T d1efvb_         239 TEDLVAKLKEIGRI  252 (252)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhcCC
Confidence            99999999999986
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1efva1 c.26.2.3 (A:20-207) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1efpa1 c.26.2.3 (A:2-184) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure