Citrus Sinensis ID: 025589

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MKNGKQSLSSHMESPKLSLFLSLSRKPQLPFVTVATFGDTLINNLVLFFWLSSKIPISFMGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPSVEKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCFG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEccccccccEEEEEccHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccHHHcccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccEEcccc
Coil and Loop (DISEMBL)
mkngkqslsshmespklslflslsrkpqlpfvtvatFGDTLINNLVLFFWLSskipisfmgeedpkkpepagpsttaktieehddpvkedkesvpngnaqrtflnpfaqppqvrdpsveksswdsiDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGkfraagfiprkflscfg
Flexible Loop (DISEMBL)
mkngkqslsshmespKLSLFLSLSRKPQLPFVTVATFGDTLINNLVLFFWLSSKIPISFMgeedpkkpepagpsttaktieehddpvkEDKESVPNGNAQrtflnpfaqppqvrdpsveksswdSIDKGAALEQLEKEKKLALIKAWEenekakadnraykrlsavgsweksKKAAVELQLKKFEEKWEKKKAEYEeriknkvadinmkAEEKRAIIeaqrgedflkVEETAgkfraagfiprkflscfg
Low Complexity Region (SEG)
MKNGKQSLSSHMESPKLSLFLSLSRKPQLPFVTVATFGDTLINNLVLFFWLSSKIPISFMGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPSVEKSSWDSIDKGaaleqlekekklalikaweeNEKAKADNRAYKRLSAVGSWEKSKKAAVELQLkkfeekwekkkaeyeeRIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCFG
Disordered region (IsUnstruct)
******************LFLSLSRKPQLPFVTVATFGDTLINNLVLFFWLSSKIPISF**********************************************************************************ALIKAW********************************************************************IIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSC**
Disordered Region (DISOPRED)
***************KLSLFLSLSRKPQLPFVTVATFGDTLINNLVLFFWLS*********************************************************************************************AWEENEKAKA*NRAYKRLSAVG********************************************************************RAAGFIPRKFLSCFG
Disordered Region (DISEMBL)
***************KLSLFLSLSRKPQLPFVTVATFGDTLINNLVLFFWLSSKIPISFMG***************AKTIE**************NGNAQRTFLNPFAQP**************SIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSA**********AVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCFG
Disordered Region (DISPRO)
*************SPKLSLFLSLSRKPQLPFVTVATFGDTLINNLVLFFWLSSKIPISFMGE*****************************************************************KGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCFG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKNGKQSLSSHMESPKLSLFLSLSRKPQLPFVTVATFGDTLINNLVLFFWLSSKIPISFMGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPSVEKSSWDSIDKGAAxxxxxxxxxxxxxxxxxxxxxAKADNRAYKRLSAVGSWEKSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCFG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q9M2D8	212	Uncharacterized protein A	yes	no	0.548	0.646	0.569	5e-37
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.5	0.631	0.592	5e-35
O80837	190	Remorin OS=Arabidopsis th	no	no	0.52	0.684	0.584	3e-30

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 105/137 (76%)

Query: 113 VRDPSVEKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKS 172
           V +P+  K +  S+D+   L  L KEK+L+ ++AWEE+EK+KA+N+A K+++ V +WE S
Sbjct: 76  VEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENS 135

Query: 173 KKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETA 232
           KKAAVE QLKK EE+ EKKKAEY ER+KNKVA I+ +AEE+RA+IEA+RGED LK EETA
Sbjct: 136 KKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETA 195

Query: 233 GKFRAAGFIPRKFLSCF 249
            K+RA G +P+    CF
Sbjct: 196 AKYRATGIVPKATCGCF 212

Arabidopsis thaliana (taxid: 3702)

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score =  147 bits (372), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 101/125 (80%)

Query: 125 SIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKF 184
           SID+ A L ++  EK+++LIKAWEE+EK+KA+N+A K++SA+G+WE SKKA +E +LKK 
Sbjct: 74  SIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKM 133

Query: 185 EEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRK 244
           EE+ EKKKAEY E++KNK+A ++ +AEEKRA+IEA+RGED LK EE A K+RA G  P+K
Sbjct: 134 EEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKK 193

Query: 245 FLSCF 249
            L  F
Sbjct: 194 ILGIF 198

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.

Solanum tuberosum (taxid: 4113)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 98/130 (75%)

Query: 120 KSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVEL 179
           K+S  S D+   L  LEKEKK + IKAWEE+EK+KA+NRA K++S V +WE SKKAAVE 
Sbjct: 61  KASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEA 120

Query: 180 QLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAG 239
           QL+K EEK EKKKA+Y E++KNKVA I+  AEEKRA++EA++GE+ LK EE   K+RA G
Sbjct: 121 QLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATG 180

Query: 240 FIPRKFLSCF 249
            +P+    CF
Sbjct: 181 VVPKATCGCF 190

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
356495663	191	PREDICTED: remorin-like [Glycine max]	0.756	0.989	0.531	1e-40
224074905	189	predicted protein [Populus trichocarpa]	0.74	0.978	0.515	7e-40
351723711	190	uncharacterized protein LOC100305683 [Gl	0.752	0.989	0.520	2e-39
441481993	181	remorin-5 protein [Dimocarpus longan]	0.716	0.988	0.557	3e-39
432278309	199	remorin [Morus indica]	0.744	0.934	0.477	8e-38
388509254	194	unknown [Lotus japonicus]	0.756	0.974	0.461	2e-37
351721994	183	uncharacterized protein LOC100305679 [Gl	0.536	0.732	0.604	4e-37
449517457	189	PREDICTED: remorin-like [Cucumis sativus	0.548	0.724	0.564	3e-36
351723105	194	uncharacterized protein LOC100527523 [Gl	0.612	0.788	0.525	3e-36
255541538	188	Remorin, putative [Ricinus communis] gi|	0.752	1.0	0.478	3e-36

>gi|356495663|ref|XP_003516694.1| PREDICTED: remorin-like [Glycine max]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 134/192 (69%), Gaps = 3/192 (1%)

Query: 60  MGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNG-NAQRTFLNPFAQPPQVRDPSV 118
           MGEE   K EP      +   EEH+  V+E +   P   N + T  +P A   +V D + 
Sbjct: 1   MGEEVSSKTEPELHCVDS-VPEEHNSSVQEKELEKPEPPNDKVTPPSP-AAAQEVADHAS 58

Query: 119 EKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVE 178
           +K + +S+DK A L ++  EK+LAL+KAWEE+EK KA+NRAYKRLSAVG WE SKKA+VE
Sbjct: 59  KKDTEESLDKDAMLARVVTEKRLALVKAWEESEKTKAENRAYKRLSAVGFWEDSKKASVE 118

Query: 179 LQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAA 238
            QLKK EE  EKKKAEY E++KNKVA I++ AEEKRA++EAQ+ E+F+ +EETA KFR+ 
Sbjct: 119 AQLKKIEENLEKKKAEYVEKMKNKVAKIHLLAEEKRAVVEAQKREEFIDLEETASKFRSR 178

Query: 239 GFIPRKFLSCFG 250
           G  PR+F +CF 
Sbjct: 179 GDTPRRFFACFS 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074905|ref|XP_002304484.1| predicted protein [Populus trichocarpa] gi|222841916|gb|EEE79463.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 133/192 (69%), Gaps = 7/192 (3%)

Query: 60  MGEEDPKKPEPAGPS--TTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPS 117
           MGEE+ +K E    S  T AK   EH  PVKE+KE+  N  A    L P ++       +
Sbjct: 1   MGEEEHEKAESKAVSLPTPAK---EHG-PVKEEKEASLNDAANEKNLVPVSENA-ADTTA 55

Query: 118 VEKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAV 177
            E  S  S ++   L ++E EK+ ALIKAW ENEKAK +N+A+K+LSA+GSWE +KK +V
Sbjct: 56  AENVSGGSNNRDIILSRVETEKRYALIKAWVENEKAKVENKAHKKLSAIGSWETTKKVSV 115

Query: 178 ELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRA 237
           E ++ KFEEK E+KKAEYEE++KNK A+++  AEEK+A+IEA++ E+ LKVEETA KFRA
Sbjct: 116 EAKIMKFEEKLERKKAEYEEKMKNKAAELHKAAEEKKAMIEAKKSEECLKVEETAAKFRA 175

Query: 238 AGFIPRKFLSCF 249
            G+ P+KFL CF
Sbjct: 176 TGYTPKKFLGCF 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723711|ref|NP_001235241.1| uncharacterized protein LOC100305683 [Glycine max] gi|255626299|gb|ACU13494.1| unknown [Glycine max]

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 133/192 (69%), Gaps = 4/192 (2%)

Query: 60  MGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNG-NAQRTFLNPFAQPPQVRDPSV 118
           MGEE   K EP   S      +EH+   +E +   P   N + T  +P A   +V D + 
Sbjct: 1   MGEEVSYKTEPE--SELHSVPQEHNSSAQEKELEKPEPPNDKVTPPSPVA-AQEVADHAS 57

Query: 119 EKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVE 178
           +K + +S+DK A L ++  EK+LALIKAWEE+EK KA+NRAYK+ SAVG WE SKKA+VE
Sbjct: 58  KKDTEESVDKDAMLAKVLTEKRLALIKAWEESEKTKAENRAYKKHSAVGLWEDSKKASVE 117

Query: 179 LQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAA 238
            QLKK EE  EKKKAEY E++KNK+A+I+  AEEK+AI+EAQ+ E+F+ +EE A KFR+ 
Sbjct: 118 AQLKKIEESMEKKKAEYVEKMKNKIAEIHRLAEEKKAIVEAQKREEFIDLEEAASKFRSR 177

Query: 239 GFIPRKFLSCFG 250
           G +PRKF +CFG
Sbjct: 178 GDVPRKFFACFG 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|441481993|gb|AGC39091.1| remorin-5 protein [Dimocarpus longan]

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 138/190 (72%), Gaps = 11/190 (5%)

Query: 60  MGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPSVE 119
           M EED KK E    S+++ + ++H D V        NG  + + LNP AQ  +  DP+  
Sbjct: 1   MAEEDHKKSES--GSSSSVSPDDHHDHV--------NGEEKESNLNPVAQG-EAADPANG 49

Query: 120 KSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVEL 179
           K+S  S D+   L ++E EK+LALIKAWEEN KA  DN+AYK+ SAVG+WE S++A+VE 
Sbjct: 50  KTSEASFDRDTILAKVEMEKRLALIKAWEENAKAIVDNKAYKKHSAVGTWESSRRASVEA 109

Query: 180 QLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAG 239
           QLKKFEEK EKK+A   ER+ NK+A+I+  AEEKRA++EA+RGEDFLK+EETA KFRAAG
Sbjct: 110 QLKKFEEKLEKKRAANAERMNNKIAEIHRAAEEKRAMVEAKRGEDFLKIEETASKFRAAG 169

Query: 240 FIPRKFLSCF 249
           +IPRKFL+CF
Sbjct: 170 YIPRKFLACF 179

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|432278309|gb|AGB07445.1| remorin [Morus indica]

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 17/203 (8%)

Query: 60  MGEEDPKKPEPAGPST------TAKTIEEHDDPVKEDKESVPNG------NAQRTFLNPF 107
           M EE P K EP  PS+        K  EE    V E+K  +P+       +  +      
Sbjct: 1   MAEEQPIKVEPEAPSSEPPTEAKVKPAEEPPKDVTEEKSVIPHPPPEDKPDESKALAVVD 60

Query: 108 AQPPQVRDPSVEKSSWD-SIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAV 166
            +P    +P+ EKSS + SI++ A L ++  EK+L+LI+AWEE+EK+KA+N+A+K +S++
Sbjct: 61  MEP----EPAAEKSSSEGSINRDAVLARVATEKRLSLIRAWEESEKSKAENKAHKNVSSI 116

Query: 167 GSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFL 226
           G+WE SKKA+VE QLKKFEE  EKKKAEY E++KNK+A I+ +AEE++AIIEA+RGE+ L
Sbjct: 117 GAWENSKKASVEAQLKKFEENLEKKKAEYVEKMKNKIALIHKEAEERKAIIEAKRGEELL 176

Query: 227 KVEETAGKFRAAGFIPRKFLSCF 249
           K EE+A K+RA G  P+K L CF
Sbjct: 177 KAEESAAKYRATGTGPKKLLGCF 199

Source: Morus indica

Species: Morus indica

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509254|gb|AFK42693.1| unknown [Lotus japonicus]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 128/195 (65%), Gaps = 6/195 (3%)

Query: 60  MGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQ----RTFLNPFAQPPQVRD 115
           MGEED    +    +    ++ E +  V+E +   P    Q    +   +P  Q   V D
Sbjct: 1   MGEEDSNLNKVESQTEFVDSVSEQEPQVEEKESEKPEAVTQEEPHKEVPSPIVQ--NVAD 58

Query: 116 PSVEKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKA 175
              +K +  S+D+ AAL ++  EK+LALIKAWEE+E+ KA+NRAYK+ SAVG WE+S+KA
Sbjct: 59  DDAKKVTGGSVDRDAALARVVTEKRLALIKAWEESERTKAENRAYKKQSAVGLWEESRKA 118

Query: 176 AVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKF 235
           ++E +LKK EE  E+KKAEY E++KNK+A+I+  AEEKRA +EA + E+FL+VEETA KF
Sbjct: 119 SIEAELKKIEENLERKKAEYAEKMKNKIAEIHQAAEEKRATVEANKKEEFLEVEETAAKF 178

Query: 236 RAAGFIPRKFLSCFG 250
           R+ G  P+K  +CF 
Sbjct: 179 RSRGVAPKKLFACFS 193

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721994|ref|NP_001235181.1| uncharacterized protein LOC100305679 [Glycine max] gi|255626287|gb|ACU13488.1| unknown [Glycine max]

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 108/134 (80%)

Query: 116 PSVEKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKA 175
           P+ ++SS  SID+  AL ++EKEKKL+ +KAWEE+EKAKA+NRA K LSA+ +WE SKKA
Sbjct: 50  PANKQSSRGSIDRDIALAEVEKEKKLSYVKAWEESEKAKAENRAQKHLSAIAAWENSKKA 109

Query: 176 AVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKF 235
           A+E +LKK EE+ EKKKAEY E++KNKVA ++ +AEEKRA+IEA+RGE+ L+ EE A K+
Sbjct: 110 ALEAELKKLEEQLEKKKAEYGEKMKNKVALVHKEAEEKRAMIEAKRGEEILQTEEMAAKY 169

Query: 236 RAAGFIPRKFLSCF 249
           RA G  P+K + CF
Sbjct: 170 RATGTTPKKTIGCF 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517457|ref|XP_004165762.1| PREDICTED: remorin-like [Cucumis sativus]

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 109/140 (77%), Gaps = 3/140 (2%)

Query: 111 PQVRDPSVEKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWE 170
           P+V DP   K++  S+++ A L ++  EK+L+L+KAWEE+EK+KA+N+A+K+LS+V +WE
Sbjct: 52  PEVADP---KTTEGSVNRDAVLAKVATEKRLSLVKAWEESEKSKAENKAHKKLSSVAAWE 108

Query: 171 KSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEE 230
            S+KA+VE  LKK EE  EKKKA+Y E++KNK+A ++  AEEKRAIIEA+RGED LK EE
Sbjct: 109 NSQKASVEADLKKIEESLEKKKAKYIEQMKNKIALLHKSAEEKRAIIEAKRGEDLLKAEE 168

Query: 231 TAGKFRAAGFIPRKFLSCFG 250
           TA K+RA G  P+K L CF 
Sbjct: 169 TAAKYRATGTAPKKLLGCFS 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723105|ref|NP_001237267.1| uncharacterized protein LOC100527523 [Glycine max] gi|255632538|gb|ACU16619.1| unknown [Glycine max]

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 98  NAQRTFLNPFAQPPQVRDPSVEKS-SWDSIDKGAALEQLEKEKKLALIKAWEENEKAKAD 156
           N  R+FL   ++  + + P+  ++ S DS+D+ A L ++E EK+LALI+AWEE+EK KA+
Sbjct: 39  NRFRSFLVILSKKVKKKVPTTTRTDSKDSVDRDAVLARVESEKRLALIRAWEESEKTKAE 98

Query: 157 NRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAI 216
           NRAYKR +AV  WE SKKA+ E  LK+ EEK ++ KA+  E+++N VA+I+  AEEKRA+
Sbjct: 99  NRAYKRHNAVVLWENSKKASAEAHLKRIEEKLDRNKAKCVEKMQNNVAEIHRTAEEKRAM 158

Query: 217 IEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCFG 250
           IEA RGE+FL++EE A KFR  G+ PRK+L CFG
Sbjct: 159 IEANRGEEFLEIEEKAAKFRTRGYSPRKYLPCFG 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541538|ref|XP_002511833.1| Remorin, putative [Ricinus communis] gi|223549013|gb|EEF50502.1| Remorin, putative [Ricinus communis]

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 128/190 (67%), Gaps = 2/190 (1%)

Query: 60  MGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPSVE 119
           M E++ KK E   P   A    + D  V  DK +VP    +       A   +V +   +
Sbjct: 1   MAEQEAKKLEAESPVAPAPAEAKSD--VAHDKATVPTPEEKPDDSKALAVVEKVPESGPK 58

Query: 120 KSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVEL 179
           K+S  S+D+  AL ++EKEK+ + IKAWE++EK+KA+N+A K+LS+V +WE SKKAA+E 
Sbjct: 59  KTSGGSLDRDIALAEVEKEKRNSFIKAWEDSEKSKAENKAQKKLSSVTAWENSKKAALEA 118

Query: 180 QLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAG 239
           +L+K EE+ EKKKAEY E++KNKVA ++ +AEEKRA++EAQRGE+ LK EE A K+RA G
Sbjct: 119 KLRKIEEQLEKKKAEYAEKMKNKVALVHKQAEEKRAMVEAQRGEEVLKAEEMAAKYRATG 178

Query: 240 FIPRKFLSCF 249
             P+K L CF
Sbjct: 179 QTPKKLLGCF 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.792	0.933	0.341	7.8e-23
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.748	0.984	0.329	5.5e-22
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.712	0.898	0.350	7e-22
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.392	0.485	0.489	6.3e-21
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.396	0.565	0.474	9.2e-20
TAIR|locus:2127058	123	AT4G00670 "AT4G00670" [Arabido	0.384	0.780	0.329	3.1e-12
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.396	0.203	0.323	3.2e-06

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 70/205 (34%), Positives = 100/205 (48%)

Query:    51 LSSKIPISFMGEEDPKKPEPAGPSTTAKTIEEHDDPVKED--KESVPNGNAQRTFLNPFA 108
             L S+ P           P PA     A         V +D  +E + N   ++ F +  A
Sbjct:     9 LESESPAKVTTPAPADTPAPAPAEIPAPAPAPTPADVTKDVAEEKIQNPPPEQIFDDSKA 68

Query:   109 ----QPPQVRDPSVEKSSWDSIDKGXXXXXXXXXXXXXXXXXXXXNEKAKADNRAYKRLS 164
                 + P V +P+  K +  S+D+                     +EK+KA+N+A K+++
Sbjct:    69 LTVVEKP-VEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIA 127

Query:   165 AVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKAEEKRAIIEAQRGED 224
              V +WE SKKAAVE QL                R+KNKVA I+ +AEE+RA+IEA+RGED
Sbjct:   128 DVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGED 187

Query:   225 FLKVEETAGKFRAAGFIPRKFLSCF 249
              LK EETA K+RA G +P+    CF
Sbjct:   188 VLKAEETAAKYRATGIVPKATCGCF 212

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 62/188 (32%), Positives = 92/188 (48%)

Query:    62 EEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPSVEKS 121
             E+   K +   P+  A   E    PV+   E + N     +      + P + + + +K+
Sbjct:     4 EQKTSKVDVESPAVLAPAKEPTPAPVEVADEKIHNPPPVESKALAVVEKP-IEEHTPKKA 62

Query:   122 SWDSIDKGXXXXXXXXXXXXXXXXXXXXNEKAKADNRAYKRLSAVGSWEKSKKAAVELQL 181
             S  S D+                     +EK+KA+NRA K++S V +WE SKKAAVE QL
Sbjct:    63 SSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQL 122

Query:   182 XXXXXXXXXXXXXXXXRIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFI 241
                             ++KNKVA I+  AEEKRA++EA++GE+ LK EE   K+RA G +
Sbjct:   123 RKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVV 182

Query:   242 PRKFLSCF 249
             P+    CF
Sbjct:   183 PKATCGCF 190

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 68/194 (35%), Positives = 97/194 (50%)

Query:    64 DPKKPEPAGPSTTAKTIEEHDD--------PVKEDKESVPNGNAQRTFLNPFAQPPQVRD 115
             DP  P P GP    K +   +         P  E+KE  P+ +     +   A  P+   
Sbjct:    13 DPAPPAP-GPVEAPKEVVADEKAIVAPALPPPAEEKEK-PDDSKALVVVETKA--PE--- 65

Query:   116 PSVEKSSWDSIDKGXXXXXXXXXXXXXXXXXXXXNEKAKADNRAYKRLSAVGSWEKSKKA 175
             P+ EK    SID+                     +EK+KA+N+A K++SA+G+WE SKKA
Sbjct:    66 PADEKKE-GSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKA 124

Query:   176 AVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKF 235
              +E +L                ++KNK+A ++ +AEEKRA+IEA+RGED LK EE A K+
Sbjct:   125 NLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKY 184

Query:   236 RAAGFIPRKFLSCF 249
             RA G  P+K L  F
Sbjct:   185 RATGTAPKKILGIF 198

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 48/98 (48%), Positives = 65/98 (66%)

Query:   151 EKAKADNRAYKRLSAVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKA 210
             EK K +N+A K+LS++GSWE +KKAAVE +L                ++KNK+A I+ +A
Sbjct:   104 EKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEA 163

Query:   211 EEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSC 248
             EEKRA+IEA+RGE+ LK EE A K+RA G  P+K   C
Sbjct:   164 EEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGC 201

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 47/99 (47%), Positives = 64/99 (64%)

Query:   151 EKAKADNRAYKRLSAVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKA 210
             EK+K +N+A K++S+VG+WE SKKA+VE +L                ++KNK+A I+ +A
Sbjct:    77 EKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHKEA 136

Query:   211 EEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCF 249
             EEKRA+ EA+RGED LK EE A K+RA G  P K    F
Sbjct:   137 EEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2127058 AT4G00670 "AT4G00670" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/97 (32%), Positives = 55/97 (56%)

Query:   154 KADNRAYKRLSAVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKAEEK 213
             K +N+  K+L  +  WEK K   +E +L                +++N+ A ++ KA++K
Sbjct:    27 KVNNKTQKKLLDISGWEKKKTTKIESELARIQRKMDSKKMEKSEKLRNEKAAVHAKAQKK 86

Query:   214 RAIIEAQRGEDFLKVEETAGKFRAAGFIPRKF-LSCF 249
             +A ++ +R ++ L  EE A +F+AAG IP+K  LSCF
Sbjct:    87 KADVQTRRAQEILDAEEAAARFQAAGKIPKKSSLSCF 123

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 32/99 (32%), Positives = 45/99 (45%)

Query:   151 EKAKADNRAYKRLSAVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKA 210
             EKAK   R  +    + +WE  +KA  E ++                R+  K+A I  KA
Sbjct:   384 EKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQDRLMKKLATIERKA 443

Query:   211 EEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCF 249
             EEKRA  EA++     K E+ A + R  G +P    SCF
Sbjct:   444 EEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCF 482


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       214   0.00085  112 3  11 23  0.44    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  170 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.24u 0.20s 20.44t   Elapsed:  00:00:01
  Total cpu time:  20.24u 0.20s 20.44t   Elapsed:  00:00:01
  Start:  Fri May 10 16:25:20 2013   End:  Fri May 10 16:25:21 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030969 hypothetical protein (189 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	8e-31

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score =  110 bits (276), Expect = 8e-31
 Identities = 54/110 (49%), Positives = 71/110 (64%)

Query: 136 EKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEY 195
           +K +  +   AWEE EKAK +N+  +  + + +WE  KKA  E +LKK E K EKKKAE 
Sbjct: 2   KKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEA 61

Query: 196 EERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKF 245
            E++KNK+A  + KAEEKRA  EA+RGE+  K EE A K RA G +P K 
Sbjct: 62  AEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEKAAKIRATGKLPSKL 111

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	100.0
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	97.0
PF03766	57	Remorin_N: Remorin, N-terminal region ; InterPro:	95.9
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	83.18

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=100.00  E-value=4e-38  Score=252.85  Aligned_cols=110  Identities=48%  Similarity=0.667  Sum_probs=107.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589          137 KEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAI  216 (250)
Q Consensus       137 ~EkreSka~AWEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~  216 (250)
                      .+.++++++|||++|++|+++||+|++++|++|||+||++||++|+++|++||+||++++|||+|+|+.||++||++|++
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHhHHHHHHHHHhhcCCCCCccc
Q 025589          217 IEAQRGEDFLKVEETAGKFRAAGFIPRKFL  246 (250)
Q Consensus       217 AEAkR~ee~lKaeEKA~kiRaTGklPsscf  246 (250)
                      ++++|+++++++.++|++||+||++|++||
T Consensus        82 aea~r~~~~~k~~ekA~~~R~tG~~P~~~f  111 (111)
T PF03763_consen   82 AEARRGEEIAKAEEKAAKIRATGKVPSKCF  111 (111)
T ss_pred             HHHHHhhHHHhHHHHHHHHHhCCCCCcccC
Confidence            999999999999999999999999999875

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=97.00  E-value=0.017  Score=47.03  Aligned_cols=81  Identities=27%  Similarity=0.294  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589          136 EKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRA  215 (250)
Q Consensus       136 e~EkreSka~AWEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA  215 (250)
                      ..++.++.|.+||..+++|+....++.|.++.-=-..---+..-.|..+..+.|.+|+.+..+-.+++..+..+|.-.|+
T Consensus        23 r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~R~  102 (111)
T PF03763_consen   23 RYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKIRA  102 (111)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHh
Confidence            34556899999999999999999999998754222222223444566678899999999999999999999999998886


Q ss_pred             H
Q 025589          216 I  216 (250)
Q Consensus       216 ~  216 (250)
                      .
T Consensus       103 t  103 (111)
T PF03763_consen  103 T  103 (111)
T ss_pred             C
Confidence            4

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides

Probab=95.90  E-value=0.0036  Score=46.48  Aligned_cols=26  Identities=42%  Similarity=0.542  Sum_probs=21.4

Q ss_pred             CCC-CCCCCcccCCCCcchhhHHHHHH
Q 025589          110 PPQ-VRDPSVEKSSWDSIDKGAALEQL  135 (250)
Q Consensus       110 ~~~-~~~~~~~~~~~gS~drDa~LarV  135 (250)
                      +.+ +.+++.+|+++||+|||++|++|
T Consensus        31 Vek~~~epa~eK~s~GS~dRDa~LA~v   57 (57)
T PF03766_consen   31 VEKKVPEPAEEKPSEGSIDRDAALARV   57 (57)
T ss_pred             eeccCCCccccccCCCcchhhhhhhcC
Confidence            344 36788899999999999999985

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=83.18  E-value=32  Score=30.52  Aligned_cols=27  Identities=15%  Similarity=0.279  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589          191 KKAEYEERIKNKVADINMKAEEKRAII  217 (250)
Q Consensus       191 KRA~a~EKmkNKIA~ahKkAEEkRA~A  217 (250)
                      .+..+.+.....++.++..-+..|..+
T Consensus       139 ~~~~a~~ea~~~l~~Ae~~I~~ek~~A  165 (204)
T PRK09174        139 ERAAIEASLEKKLKEAEARIAAIKAKA  165 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444443333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 45/238 (18%), Positives = 74/238 (31%), Gaps = 63/238 (26%)

Query: 9   SSHMESPKLSLFLSLSRKPQLPFVTVATF-GDTLINNLVLFFWLSSKIPISFMGEEDPKK 67
           S    S  L LF +L  K +     V  F  + L  N   + +L S I           K
Sbjct: 57  SKDAVSGTLRLFWTLLSKQE---EMVQKFVEEVLRIN---YKFLMSPI-----------K 99

Query: 68  PEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPSVEKSSWDSID 127
            E   PS   +   E  D +  D +     N  R  L P+ +   +R             
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLK---LRQ------------ 142

Query: 128 KGAALEQLEKEKKLALI------KAW-------EENEKAKADNRAYKRLSAVGSW----E 170
              AL +L   K + +       K W           + K D + +        W     
Sbjct: 143 ---ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--------WLNLKN 191

Query: 171 KSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKV 228
            +    V   L+K   + +       +   N    I+    E R +++++  E+ L V
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 50/312 (16%), Positives = 96/312 (30%), Gaps = 87/312 (27%)

Query: 6   QSLSSHMESPKLSLFLSLSRKPQLPFVTVATFGDTLINN-------LVL----------F 48
           Q L   ++ P  +     S   +L   ++      L+ +       LVL           
Sbjct: 203 QKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 49  FWLSSKIPISFMGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLN--P 106
           F LS KI ++       +  +    +TT     +H        E     +    +L+  P
Sbjct: 262 FNLSCKILLT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRP 315

Query: 107 FAQPPQVRD--P----------SVEKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAK 154
              P +V    P              ++WD+       + +  +K   +I++     +  
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDN------WKHVNCDKLTTIIESSLNVLEPA 369

Query: 155 ADNRAYKRLS----------AVGS--WEKSKKAAVELQLKKFEEK--WEKKKAEYEERIK 200
              + + RLS           + S  W    K+ V + + K  +    EK+  E    I 
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 201 NKVADINMKAEEK----RAIIEAQR------GEDF----------------LKVEETAGK 234
           +   ++ +K E +    R+I++          +D                 LK  E   +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 235 FRAAGFIPRKFL 246
                F    FL
Sbjct: 490 M--TLF-RMVFL 498

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 36/233 (15%), Positives = 77/233 (33%), Gaps = 53/233 (22%)

Query: 11  HMESPKLSLFLSLSRKPQLP------FVTVATF-GDTLINNLVL-FFW--LSSKIPISFM 60
           H+   KL+  +  S     P      F  ++ F     I  ++L   W  +     +  +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 61  GE--------EDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQ 112
            +        + PK+           TI      ++   +        R+ ++ +   P+
Sbjct: 409 NKLHKYSLVEKQPKE----------STISIPSIYLELKVKLENEYALHRSIVDHY-NIPK 457

Query: 113 VRDPSVEKSSWDSIDK------GAALEQLEKEKKLALIK------AWEENEKAKADNRAY 160
             D   +      +D+      G  L+ +E  +++ L +       + E  K + D+ A+
Sbjct: 458 TFDS--DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHDSTAW 514

Query: 161 KRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEK 213
               ++             QLK ++        +YE  + N + D   K EE 
Sbjct: 515 NASGSI--------LNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIEEN 558

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 17/97 (17%)

Query: 130 AALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWE 189
           A  ++L +E +   I+ W E ++        KRL  + +  K  +     + KK  E+W 
Sbjct: 75  AQADRLTQEPES--IRKWREEQR--------KRLQELDAASKVMEQEWREKAKKDLEEWN 124

Query: 190 KKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFL 226
           ++++E  E+ K      N +  +K      Q   D +
Sbjct: 125 QRQSEQVEKNKI-----NNRIADKAFY--QQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	85.6

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=85.60  E-value=17  Score=31.28  Aligned_cols=7  Identities=29%  Similarity=0.705  Sum_probs=5.5

Q ss_pred             CcccccC
Q 025589          243 RKFLSCF  249 (250)
Q Consensus       243 sscfGCF  249 (250)
                      +.|.|||
T Consensus       199 ~~C~GC~  205 (256)
T 3na7_A          199 QACGGCF  205 (256)
T ss_dssp             TBCTTTC
T ss_pred             CccCCCC
Confidence            3599998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00