Citrus Sinensis ID: 025600

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPNTHEQLPSTDF
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcccccccccEEEEEEEEEEEEEEEHEHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
mpgiaignpaeigqpDALRAAVAEFFSMVIFVFAgqgsgmayskltdngaatpaglVSASIAHAFALFVAVSVganisgghvnpavtfgafvgghITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYAtavdpkrgnigiiapIAIGFIVGANilaggafdgasmnpavsfgpavvswtwdnhwvywLGPFIGAAIAAIAYTVAFicpntheqlpstdf
mpgiaignpaeigQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPNTHEQLPSTDF
MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNigiiapiaigfivgaNILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGaaiaaiaYTVAFICPNTHEQLPSTDF
***************DALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPN**********
**G**IGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFIC************
MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPNTHEQLPSTDF
*PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPNT*********
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
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MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPNTHEQLPSTDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query250 2.2.26 [Sep-21-2011]
O82598252 Aquaporin TIP1-3 OS=Arabi yes no 0.988 0.980 0.817 1e-110
P25818251 Aquaporin TIP1-1 OS=Arabi no no 0.984 0.980 0.761 1e-102
Q94CS9252 Probable aquaporin TIP1-2 yes no 0.988 0.980 0.761 1e-100
Q41963253 Aquaporin TIP1-2 OS=Arabi no no 0.988 0.976 0.737 2e-98
Q9ATM0254 Aquaporin TIP1-2 OS=Zea m N/A no 0.98 0.964 0.751 2e-96
P50156250 Probable aquaporin TIP1-1 no no 0.98 0.98 0.736 7e-95
O64964250 Aquaporin TIP1-1 OS=Zea m N/A no 0.98 0.98 0.724 6e-92
Q9FY14250 Probable aquaporin TIP-ty N/A no 0.98 0.98 0.748 1e-89
P42067249 Probable aquaporin TIP-ty N/A no 0.976 0.979 0.740 2e-87
Q41951250 Aquaporin TIP2-1 OS=Arabi no no 1.0 1.0 0.564 1e-72
>sp|O82598|TIP13_ARATH Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1 Back     alignment and function desciption
 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/247 (81%), Positives = 221/247 (89%)

Query: 4   IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAH 63
           IAIG P E  +PDA+RAA AEFFSMVIFVFAGQGSGMAY KLT +G ATPAGLV+AS++H
Sbjct: 6   IAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSH 65

Query: 64  AFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST 123
           AFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+IT +R+ILYWIAQLLG+VVACLLLK ST
Sbjct: 66  AFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVST 125

Query: 124 GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGA 183
           GG+ET+AF+LS GV  WNAVVFEIVMTFGLVYTVYATAVDPK+G+IGIIAP+AIG IVGA
Sbjct: 126 GGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGA 185

Query: 184 NILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPNTHE 243
           NIL GGAFDGASMNPAVSFGPAVVSW W NHWVYW+GPFIGAAIAAI Y   FI  N HE
Sbjct: 186 NILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTIFIGSNGHE 245

Query: 244 QLPSTDF 250
            LPS DF
Sbjct: 246 PLPSNDF 252
Potential aquaporin, which may facilitate the transport of water and small neutral solutes across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|P25818|TIP11_ARATH Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q94CS9|TIP12_ORYSJ Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q41963|TIP12_ARATH Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2 Back     alignment and function description
>sp|Q9ATM0|TIP12_MAIZE Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|P50156|TIP11_ORYSJ Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|O64964|TIP11_MAIZE Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FY14|TIP1_MEDTR Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1 Back     alignment and function description
>sp|P42067|TIP1_MEDSA Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2 Back     alignment and function description
>sp|Q41951|TIP21_ARATH Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
255580588252 tonoplast intrinsic protein, putative [R 0.988 0.980 0.886 1e-120
444300800252 aquaporin protein 6 [Camellia sinensis] 0.988 0.980 0.834 1e-115
351722853255 nodulin-26 [Glycine max] gi|310578|gb|AA 0.984 0.964 0.857 1e-115
224059532252 aquaporin, MIP family, TIP subfamily [Po 0.988 0.980 0.874 1e-113
224106541252 aquaporin, MIP family, TIP subfamily [Po 0.988 0.980 0.862 1e-113
363807926252 uncharacterized protein LOC100777419 [Gl 0.988 0.980 0.829 1e-112
82468912252 tonoplast intrinsic protein [Olea europa 0.976 0.968 0.828 1e-112
260408314252 tonoplast intrinsic protein [Hevea brasi 0.988 0.980 0.817 1e-111
60498697252 tonoplast intrinsic protein 1;2 [Mimosa 0.988 0.980 0.858 1e-109
356542491252 PREDICTED: LOW QUALITY PROTEIN: aquapori 0.988 0.980 0.809 1e-109
>gi|255580588|ref|XP_002531118.1| tonoplast intrinsic protein, putative [Ricinus communis] gi|223529314|gb|EEF31283.1| tonoplast intrinsic protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/247 (88%), Positives = 234/247 (94%)

Query: 4   IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAH 63
           IA G+PAE GQPDAL+AA+AEF SM+IFVFAG+GSGMA++KLT +GA TPAGLV+AS+AH
Sbjct: 6   IAFGSPAEAGQPDALKAALAEFISMLIFVFAGEGSGMAFNKLTSDGATTPAGLVAASLAH 65

Query: 64  AFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST 123
            FALFVAVSVGANISGGHVNPAVTFGAFVGGHITF+RSILYWIAQLLGSVVACLLLKFST
Sbjct: 66  GFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFIRSILYWIAQLLGSVVACLLLKFST 125

Query: 124 GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGA 183
           GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPK+GNIGIIAP+AIGFIVGA
Sbjct: 126 GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGNIGIIAPLAIGFIVGA 185

Query: 184 NILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPNTHE 243
           NILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPF+GA IAAI Y   FI P+THE
Sbjct: 186 NILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFVGAGIAAIVYETFFISPSTHE 245

Query: 244 QLPSTDF 250
           QLPS DF
Sbjct: 246 QLPSADF 252

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|444300800|gb|AGD98709.1| aquaporin protein 6 [Camellia sinensis] Back     alignment and taxonomy information
>gi|351722853|ref|NP_001238026.1| nodulin-26 [Glycine max] gi|310578|gb|AAA02947.1| nodulin-26 [Glycine max] Back     alignment and taxonomy information
>gi|224059532|ref|XP_002299893.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] gi|222847151|gb|EEE84698.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106541|ref|XP_002314201.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] gi|118481766|gb|ABK92822.1| unknown [Populus trichocarpa] gi|222850609|gb|EEE88156.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807926|ref|NP_001242707.1| uncharacterized protein LOC100777419 [Glycine max] gi|255634955|gb|ACU17836.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|82468912|gb|ABB76813.1| tonoplast intrinsic protein [Olea europaea] Back     alignment and taxonomy information
>gi|260408314|gb|ACX37451.1| tonoplast intrinsic protein [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|60498697|dbj|BAD90703.1| tonoplast intrinsic protein 1;2 [Mimosa pudica] Back     alignment and taxonomy information
>gi|356542491|ref|XP_003539700.1| PREDICTED: LOW QUALITY PROTEIN: aquaporin TIP1-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
TAIR|locus:2116987252 TIP1;3 "tonoplast intrinsic pr 0.988 0.980 0.740 3.7e-96
TAIR|locus:2057906251 GAMMA-TIP "gamma tonoplast int 0.996 0.992 0.694 1.5e-90
TAIR|locus:2088867253 TIP2 "tonoplast intrinsic prot 1.0 0.988 0.671 4.7e-87
TAIR|locus:2197279268 TIP3;1 [Arabidopsis thaliana ( 0.944 0.880 0.522 3.2e-65
TAIR|locus:2094977250 DELTA-TIP "delta tonoplast int 1.0 1.0 0.516 2.3e-64
TAIR|locus:2030968267 BETA-TIP "beta-tonoplast intri 0.944 0.883 0.504 9.7e-64
TAIR|locus:2168953250 TIP2;3 "tonoplast intrinsic pr 0.948 0.948 0.518 9e-61
TAIR|locus:2130883250 TIP2;2 "tonoplast intrinsic pr 0.988 0.988 0.497 1.9e-60
TAIR|locus:2043505249 TIP4;1 "tonoplast intrinsic pr 0.912 0.915 0.491 5.9e-57
TAIR|locus:2099595256 TIP5;1 "tonoplast intrinsic pr 0.864 0.843 0.400 2.4e-37
TAIR|locus:2116987 TIP1;3 "tonoplast intrinsic protein 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 183/247 (74%), Positives = 201/247 (81%)

Query:     4 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAH 63
             IAIG P E  +PDA+RAA AEFFSMVIFVFAGQGSGMAY KLT +G ATPAGLV+AS++H
Sbjct:     6 IAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSH 65

Query:    64 AFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST 123
             AFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+IT +R+ILYWIAQLLG+VVACLLLK ST
Sbjct:    66 AFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVST 125

Query:   124 GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXX 183
             GG+ET+AF+LS GV  WNAVVFEIVMTFGLVYTVYATAVDPK+G+               
Sbjct:   126 GGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGA 185

Query:   184 NILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYTVAFICPNTHE 243
             NIL GGAFDGASMNPAVSFGPAVVSW W NHWVYW+GPFIG       Y   FI  N HE
Sbjct:   186 NILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTIFIGSNGHE 245

Query:   244 QLPSTDF 250
              LPS DF
Sbjct:   246 PLPSNDF 252
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;IDA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0015204 "urea transmembrane transporter activity" evidence=IDA
GO:0015840 "urea transport" evidence=IDA
TAIR|locus:2057906 GAMMA-TIP "gamma tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088867 TIP2 "tonoplast intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094977 DELTA-TIP "delta tonoplast integral protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030968 BETA-TIP "beta-tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168953 TIP2;3 "tonoplast intrinsic protein 2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130883 TIP2;2 "tonoplast intrinsic protein 2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043505 TIP4;1 "tonoplast intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099595 TIP5;1 "tonoplast intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P50156TIP11_ORYSJNo assigned EC number0.73680.980.98nono
P25818TIP11_ARATHNo assigned EC number0.76110.9840.9800nono
P42067TIP1_MEDSANo assigned EC number0.74080.9760.9799N/Ano
Q84RL6TIP23_MAIZENo assigned EC number0.58790.9160.9233N/Ano
P33560TIP_ANTMANo assigned EC number0.56620.9880.988N/Ano
P23958TIPA_PHAVUNo assigned EC number0.5320.9840.9609N/Ano
Q41963TIP12_ARATHNo assigned EC number0.73790.9880.9762nono
P24422TIP2_TOBACNo assigned EC number0.57140.960.96N/Ano
Q9ATL7TIP31_MAIZENo assigned EC number0.54980.9760.9312N/Ano
Q9FY14TIP1_MEDTRNo assigned EC number0.74890.980.98N/Ano
Q9ATL9TIP21_MAIZENo assigned EC number0.5560.9920.9959N/Ano
Q9ATL8TIP22_MAIZENo assigned EC number0.5520.9960.996N/Ano
P29975AQP1_RATNo assigned EC number0.37440.8840.8215yesno
O82598TIP13_ARATHNo assigned EC number0.81780.9880.9801yesno
Q02013AQP1_MOUSENo assigned EC number0.37440.8840.8215yesno
P21653TIP1_TOBACNo assigned EC number0.56620.9880.988N/Ano
O64964TIP11_MAIZENo assigned EC number0.72460.980.98N/Ano
Q94CS9TIP12_ORYSJNo assigned EC number0.76110.9880.9801yesno
Q9ATM0TIP12_MAIZENo assigned EC number0.75100.980.9645N/Ano
Q9AT75TIP32_MAIZENo assigned EC number0.54360.980.9210N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00011653
aquaporin, MIP family, TIP subfamily (252 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-151
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-81
pfam00230218 pfam00230, MIP, Major intrinsic protein 7e-77
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-66
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 3e-60
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 8e-49
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-28
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 5e-23
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-21
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 8e-21
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 8e-20
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 4e-19
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 9e-16
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information 
 Score =  420 bits (1082), Expect = e-151
 Identities = 202/247 (81%), Positives = 223/247 (90%)

Query: 4   IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAH 63
           IAIG P E   PDAL+AA+AEF S +IFVFAG+GSGMA++KLTDNG+ TPAGLV+A++AH
Sbjct: 6   IAIGTPGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAH 65

Query: 64  AFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST 123
           AFALFVAVSVGANISGGHVNPAVTFGAF+GG+IT +R ILYWIAQLLGSVVACLLLKFST
Sbjct: 66  AFALFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFST 125

Query: 124 GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGA 183
           GGLETSAF+LSSGVG WNA VFEIVMTFGLVYTVYATAVDPK+G++GIIAPIAIGFIVGA
Sbjct: 126 GGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGA 185

Query: 184 NILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPNTHE 243
           NILAGGAFDGASMNPAVSFGPAVVSWTW NHWVYW GP IG  IA + Y + FI   THE
Sbjct: 186 NILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGSTTHE 245

Query: 244 QLPSTDF 250
           QLP+TD+
Sbjct: 246 QLPTTDY 252

Length = 252
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.68
PLN00184 296 aquaporin NIP1; Provisional 99.67
PLN00167 256 aquaporin TIP5; Provisional 99.61
PLN00183 274 putative aquaporin NIP7; Provisional 99.58
PLN00166 250 aquaporin TIP2; Provisional 99.58
PLN00182 283 putative aquaporin NIP4; Provisional 99.56
PRK05420 231 aquaporin Z; Provisional 99.55
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.54
PLN00027 252 aquaporin TIP; Provisional 99.53
PTZ00016 294 aquaglyceroporin; Provisional 99.52
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.44
TIGR00861 216 MIP MIP family channel proteins. processes. Some m 99.43
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.42
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.36
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.29
PRK11562268 nitrite transporter NirC; Provisional 89.13
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-55  Score=366.58  Aligned_cols=232  Identities=48%  Similarity=0.805  Sum_probs=209.5

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhccccccccchHHHH
Q 025600            9 PAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTF   88 (250)
Q Consensus         9 ~~~~~~~~~~r~~~~EfigT~llvf~~~g~~~~~~~~~~~~~~~~~~~~~~a~~~g~~l~~~i~~~~~iSGah~NPavTl   88 (250)
                      .++..+++.+|++++||+||++++|++|++.+...+     ...+.+.+.+++.+|+.+++.++.++++||||+|||||+
T Consensus         2 ~~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~-----~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~   76 (238)
T KOG0223|consen    2 SGELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK-----YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTL   76 (238)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHH
Confidence            456778999999999999999999999999976543     123567899999999999999999999999999999999


Q ss_pred             HHHHhcCCCchhHHHHHHHHhhhHHHHHHHHHHHhCCC----cccceeccCCCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 025600           89 GAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGL----ETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDP  164 (250)
Q Consensus        89 a~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~v~~~~~~~  164 (250)
                      ++++.|++++.+++.|+.+|++|+++|+.+++.+.+++    ......++++.+..|++..|++.||.|+++++.+++|+
T Consensus        77 a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~  156 (238)
T KOG0223|consen   77 AFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDP  156 (238)
T ss_pred             HHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecC
Confidence            99999999999999999999999999999999999873    33445678889999999999999999999999977888


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHcccCCCceeecchhHHHHHHHHHHHHHHHhcCCCCCCC
Q 025600          165 KRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFICPNTHEQ  244 (250)
Q Consensus       165 ~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~vy~~ap~~Ga~~a~~~~~~l~~~~~~~~~  244 (250)
                      |+.   .+.|+.||+++.+.+++.+++||++|||||+|||++..+.|+++|+||++|++|+++++++|+.++.++ .++.
T Consensus       157 ~~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~-~~~~  232 (238)
T KOG0223|consen  157 RRS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD-ESEP  232 (238)
T ss_pred             CCc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc-cccc
Confidence            775   579999999999999999999999999999999999999999999999999999999999999999884 4454


Q ss_pred             CCCCC
Q 025600          245 LPSTD  249 (250)
Q Consensus       245 ~~~~~  249 (250)
                      +++.|
T Consensus       233 ~~~~~  237 (238)
T KOG0223|consen  233 TKSAD  237 (238)
T ss_pred             cCccC
Confidence            44443

>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 8e-28
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 9e-28
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 9e-28
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 8e-27
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 1e-26
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-26
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 3e-26
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 6e-26
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 6e-26
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-25
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-24
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-24
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-24
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-24
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-24
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 9e-21
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 1e-13
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-12
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 3e-07
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 4e-06
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 4e-06
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 4e-06
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 5e-06
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 6e-06
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-05
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 3e-05
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 4e-04
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 19  RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
           +A  AEF +M+IFV    GS + +   ++N    P  +V  S+    ++   V    +IS
Sbjct: 14  KAVTAEFLAMLIFVLLSVGSTINWGG-SEN--PLPVDMVLISLCFGLSIATMVQCFGHIS 70
Query: 79  GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFAL 133
           GGH+NPAVT        I+  +S+ Y  AQ LG+++   +L   T     GGL  +   +
Sbjct: 71  GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT--V 128
Query: 134 SSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDG 193
              + A + ++ E+++TF LV+T++A+  D KR +                 L    + G
Sbjct: 129 HGNLTAGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALAIGFSVAIGHLFAINYTG 187
Query: 194 ASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYTVAFICPNTH 242
           ASMNPA SFGPAV+   W+NHW+YW+GP IG       Y   F CP+  
Sbjct: 188 ASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF-CPDVE 235
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-88
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 3e-86
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 2e-85
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-85
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 3e-84
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 3e-83
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 3e-82
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 7e-81
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-74
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-71
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 6e-63
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 1e-36
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 8e-34
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  264 bits (677), Expect = 2e-88
 Identities = 78/251 (31%), Positives = 123/251 (49%), Gaps = 8/251 (3%)

Query: 2   PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASI 61
               +     +      +A  AEF +M+IFV    GS + +    +     P  +V  S+
Sbjct: 36  SRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSEN---PLPVDMVLISL 92

Query: 62  AHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF 121
               ++   V    +ISGGH+NPAVT        I+  +S+ Y  AQ LG+++   +L  
Sbjct: 93  CFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYL 152

Query: 122 STGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIG 178
            T            +   + A + ++ E+++TF LV+T++A+  D KR ++     +AIG
Sbjct: 153 VTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALAIG 211

Query: 179 FIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFIC 238
           F V    L    + GASMNPA SFGPAV+   W+NHW+YW+GP IGA +A   Y   F  
Sbjct: 212 FSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFC- 270

Query: 239 PNTHEQLPSTD 249
           P+   +    +
Sbjct: 271 PDVELKRRLKE 281
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.6
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.53
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.52
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.51
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.51
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.48
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.48
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.47
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.46
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.46
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.45
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.44
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.44
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 89.2
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.8e-55  Score=368.02  Aligned_cols=220  Identities=35%  Similarity=0.610  Sum_probs=193.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHhc
Q 025600           15 PDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGG   94 (250)
Q Consensus        15 ~~~~r~~~~EfigT~llvf~~~g~~~~~~~~~~~~~~~~~~~~~~a~~~g~~l~~~i~~~~~iSGah~NPavTla~~l~g   94 (250)
                      ++++|++++||+||++|+++|+++++..   .++++.++.+++.++++||+++++.+++++++||||+|||||+++++.|
T Consensus         1 ~~~~r~~~aEfiGT~~lv~~g~g~~~~~---~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g   77 (223)
T 3gd8_A            1 QAFWKAVTAEFLAMLIFVLLSLGSTINW---GGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTR   77 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCT---TTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcC
Confidence            4689999999999999999999998643   1122223468999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHhhhHHHHHHHHHHHhCCCc---ccceeccCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc
Q 025600           95 HITFVRSILYWIAQLLGSVVACLLLKFSTGGLE---TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGI  171 (250)
Q Consensus        95 ~~~~~~~~~yi~aQ~~Ga~~g~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~  171 (250)
                      +++|+|++.|+++|++|+++|+.+++.++++..   ...+.+.++.+..++++.|+++|++|+++++.. .|+++.....
T Consensus        78 ~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~-~~~~~~~~~~  156 (223)
T 3gd8_A           78 KISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFAS-CDSKRTDVTG  156 (223)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-TCTTCSCCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHH-hccccCCccC
Confidence            999999999999999999999999999886431   234556677899999999999999999999984 6666544445


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHcccCCCceeecchhHHHHHHHHHHHHHHHhcC
Q 025600          172 IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFIC  238 (250)
Q Consensus       172 ~~~~~ig~~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~vy~~ap~~Ga~~a~~~~~~l~~~  238 (250)
                      ..|+.||+.+...+..++++||+++||||||+||++.++|+++|+||++|++|+++++++|++++.|
T Consensus       157 ~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p  223 (223)
T 3gd8_A          157 SIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP  223 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence            6899999999888888888999999999999999999999999999999999999999999998754
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 250
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-37
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-32
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-26
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 4e-26
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  130 bits (327), Expect = 1e-37
 Identities = 83/232 (35%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 10  AEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFV 69
           +E  +    RA VAEF +M++F+F   GS + +     +   T A   +  ++ AF L +
Sbjct: 3   SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62

Query: 70  AVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLE 127
           A    +  +ISG H+NPAVT G  +   I+ +R+I+Y IAQ +G++VA  +L   T  L 
Sbjct: 63  ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122

Query: 128 TSA---FALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGAN 184
            ++    AL+ GV +   +  EI+ T  LV  V AT  D +R ++G   P+AIGF V   
Sbjct: 123 DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALG 181

Query: 185 ILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAF 236
            L    + G  +NPA SFG +V++  + +HW++W+GPFIGAA+A + Y    
Sbjct: 182 HLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFIL 233
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.58
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.46
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.39
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.33
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-52  Score=352.20  Aligned_cols=217  Identities=36%  Similarity=0.622  Sum_probs=193.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHh
Q 025600           14 QPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVG   93 (250)
Q Consensus        14 ~~~~~r~~~~EfigT~llvf~~~g~~~~~~~~~~~~~~~~~~~~~~a~~~g~~l~~~i~~~~~iSGah~NPavTla~~l~   93 (250)
                      +.+++|++++||+||++++|+++++++...       .++.+.+.+++++|++++.+++.++++||||+|||||+++++.
T Consensus         1 s~s~~r~~laEf~GT~~lvf~g~gs~~~~~-------~~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~   73 (234)
T d1ymga1           1 SASFWRAICAEFFASLFYVFFGLGASLRWA-------PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVG   73 (234)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHCSCC--------CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhc
Confidence            467999999999999999999999875321       1235788899999999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHhhhHHHHHHHHHHHhCCCc---ccceeccCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 025600           94 GHITFVRSILYWIAQLLGSVVACLLLKFSTGGLE---TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIG  170 (250)
Q Consensus        94 g~~~~~~~~~yi~aQ~~Ga~~g~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~  170 (250)
                      |+++|++++.|+++|++||++|+++++.++++..   .....+.++.+..++++.|++.|+++++.++.. .|+++....
T Consensus        74 g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~-~~~~~~~~~  152 (234)
T d1ymga1          74 SQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRL  152 (234)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCTTSCSCC
T ss_pred             cCCChhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheee-ecCCccCcC
Confidence            9999999999999999999999999999987542   223455677889999999999999999999985 565554444


Q ss_pred             chhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHcccCCCceeecchhHHHHHHHHHHHHHHHhcC
Q 025600          171 IIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYTVAFIC  238 (250)
Q Consensus       171 ~~~~~~ig~~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~vy~~ap~~Ga~~a~~~~~~l~~~  238 (250)
                      ...++.+|+.+.+.....++.||+++|||||++|++.+++|+++|+||++|++|+++|+++|++++.+
T Consensus       153 ~~~~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~  220 (234)
T d1ymga1         153 GSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP  220 (234)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             cceeEeehHHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcC
Confidence            56799999999999999999999999999999999999999999999999999999999999999877
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure