Citrus Sinensis ID: 025607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHcccccEEcccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHHccccHHccccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHHHccccccEEEcccccccccccccccHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEccccccEEEEccccHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccccEEEEccccEcccccccccccEEEHHHcHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHcccccEEEEEc
Coil and Loop (DISEMBL)
mlisnyikiplepyvyvhghsdkQLTRILKISLSLSRGSIRTLIFHFNlyvsddqltytaercpqlkrLVMPAWNRIKKTGICKAIRMWRdlesltmpsianppyLMEEIAQNCRNFrelkimgpfdLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGlqnlevlnishcllidvplapapkkIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEeglwkddevlpaIVLCI
Flexible Loop (DISEMBL)
MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPqlkrlvmpawnrikKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLtcmedscimcqrtkndegIMRWYKYeeglwkddevlpaiVLCI
Low Complexity Region (SEG)
MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVplapapkkiikklDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Disordered region (IsUnstruct)
**ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLC*
Disordered Region (DISOPRED)
*L*SNY*KIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Disordered Region (DISEMBL)
MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Disordered Region (DISPRO)
*LISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q9M2Z5	309	F-box/LRR-repeat protein	yes	no	0.956	0.773	0.692	3e-97
Q9T0C6	333	Putative F-box protein At	no	no	0.792	0.594	0.284	4e-19
Q9S9V9	449	Putative F-box/LRR-repeat	no	no	0.52	0.289	0.268	0.0001
E6ZHJ8	292	F-box/LRR-repeat protein	N/A	no	0.528	0.452	0.286	0.0002
Q6NW95	296	F-box/LRR-repeat protein	yes	no	0.492	0.415	0.277	0.0007

>sp|Q9M2Z5|FBL53_ARATH F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana GN=At3g48880 PE=2 SV=1

 Score =  354 bits (908), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 167/241 (69%), Positives = 208/241 (86%), Gaps = 2/241 (0%)

Query: 4   SNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERC 63
           S++IKIPLEPYVYV   SD+ LTRILK+S++LS GS RTLIFHFNL++SDDQLTYTAERC
Sbjct: 64  SSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERC 123

Query: 64  PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIM 123
           P L+R+V+PAWNRIKKTGICKAIR+W+DLESLTMPSIANPPYL+ EIA+NC+NF+ELKIM
Sbjct: 124 PGLRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIM 183

Query: 124 GPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP-LA 182
           GPF++ FA+TL   LP +K LS+RC+ + R+AL+ ILDGL +LEVLNISH  L++     
Sbjct: 184 GPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSGWQ 243

Query: 183 PAPKKIIKKLDRTILQKAARLRKFLTCMED-SCIMCQRTKNDEGIMRWYKYEEGLWKDDE 241
           P  K I+++LD+TI++K ARL+KFLTCM+  +C+MCQRT+NDEGI+RWYKYEEG WK DE
Sbjct: 244 PQQKVIVRELDKTIMEKTARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWKVDE 303

Query: 242 V 242
           V
Sbjct: 304 V 304

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0C6|FB230_ARATH Putative F-box protein At4g11580 OS=Arabidopsis thaliana GN=At4g11580 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 13/211 (6%)

Query: 35  LSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLES 94
           LSR + + L F+FN Y+ ++ L + AE+ P +++L +P W    +  +  A   W++L++
Sbjct: 128 LSRMAPKNLFFNFNSYIQENGLKFAAEKMPNIEKLALPIWCYQNEKSLRFAFSQWKNLKT 187

Query: 95  LTMPS--IANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLN 152
           L +      +  +  + + ++C N   LK +G  +   +  +  YL  LK LSLRC  ++
Sbjct: 188 LIIAHEHSFSGRFDFKAVGESCSNLTNLKYLGRLEEYTSREIVSYLHSLKRLSLRCFLVS 247

Query: 153 RDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAA-RLRKFLTCME 211
             A+   + GL NL +LN+SHC        P    I K +D  ++  A  +L KF+TC  
Sbjct: 248 SIAVYRFITGLPNLTILNVSHCKNPYDYFLP----IAKSIDNYVITAATQKLEKFITCPH 303

Query: 212 DSCIMCQRTKNDEGIMRWYKYEEGLWKDDEV 242
           D C++C+     +       Y   +W++DE+
Sbjct: 304 D-CMICK-----DRCRYSLSYLAEVWRNDEI 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=4 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 50  YVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEE 109
           Y ++D + Y A+R   LK L +     I   G+ KA+     LE L +         + +
Sbjct: 263 YGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRD 322

Query: 110 IAQNCRNFRELKIMGPFDLLF--------ASTLNMYLPKLKVLSLRCTTLNRDALILILD 161
           I ++C N + LK+    +++F        A  +   +P+L+ L L    L    L  ILD
Sbjct: 323 IGRSCPNLKTLKLNRAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILD 382

Query: 162 GLQNLEVLNISHCLLIDV 179
           G  +LE L++  C  I++
Sbjct: 383 GCPHLEHLDLRQCFNINL 400

Arabidopsis thaliana (taxid: 3702)

>sp|E6ZHJ8|FXL15_DICLA F-box/LRR-repeat protein 15 OS=Dicentrarchus labrax GN=fbxl15 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 25  LTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICK 84
           LTR   +++SLS   ++ L      +V    L   A+ C  L+ + + A  ++K   IC 
Sbjct: 120 LTRHSLVAVSLSCMHLQHLGLAHCEWVDSLSLRSLADHCGGLQSIDLTACRQLKDDAICY 179

Query: 85  AIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFAS--TLNMYLPKL 141
             +    L SL++   AN     +EE+A+NCR   +L + G   +   S  TL  Y PKL
Sbjct: 180 LAKKCLKLRSLSLAVNANITDESVEEVAKNCRGLEQLDLTGCLRVRNQSIRTLAEYCPKL 239

Query: 142 KVLSL-RCTTLNRDAL 156
           + L +  C  +   +L
Sbjct: 240 QSLKVNHCHNVTESSL 255

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Acts as a positive regulator of the BMP signaling pathway). Required for dorsal/ventral pattern formation (By similarity.

Dicentrarchus labrax (taxid: 13489)

>sp|Q6NW95|FXL15_DANRE F-box/LRR-repeat protein 15 OS=Danio rerio GN=fbxl15 PE=2 SV=2

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 24  QLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGIC 83
           QL+R   +++SLS   ++ L      +V    L   A+ CP L+ L + A  ++K   +C
Sbjct: 123 QLSRRALVAVSLSCPRLQHLSLAHCEWVDSLALRSLADHCPMLRSLDLTACRQLKDPAVC 182

Query: 84  KAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFAS--TLNMYLPK 140
                  +L +L++   AN     +EE+A+ CR    L + G   +   +  TL  Y PK
Sbjct: 183 YLAGKCPELRALSVAVNANITDTAVEEVAKKCREMERLDLTGCLRVRNEAIRTLAEYCPK 242

Query: 141 LKVLSL 146
           L+ L +
Sbjct: 243 LQSLKV 248

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Acts as a positive regulator of the BMP signaling pathway (By similarity). Required for dorsal/ventral pattern formation.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
255539483	316	conserved hypothetical protein [Ricinus	0.968	0.765	0.814	1e-114
356575953	305	PREDICTED: F-box/LRR-repeat protein At3g	0.968	0.793	0.743	1e-104
388512841	305	unknown [Medicago truncatula]	0.968	0.793	0.747	1e-104
217074224	305	unknown [Medicago truncatula]	0.968	0.793	0.743	1e-103
356535883	304	PREDICTED: F-box/LRR-repeat protein At3g	0.968	0.796	0.743	1e-103
224122416	291	predicted protein [Populus trichocarpa]	0.964	0.828	0.739	1e-103
224134733	291	predicted protein [Populus trichocarpa]	0.964	0.828	0.714	1e-100
225470694	321	PREDICTED: F-box/LRR-repeat protein At3g	0.96	0.747	0.712	1e-100
297741053	310	unnamed protein product [Vitis vinifera]	0.96	0.774	0.712	1e-99
15229043	309	F-box/LRR-repeat protein [Arabidopsis th	0.956	0.773	0.692	2e-95

>gi|255539483|ref|XP_002510806.1| conserved hypothetical protein [Ricinus communis] gi|223549921|gb|EEF51408.1| conserved hypothetical protein [Ricinus communis]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/242 (81%), Positives = 225/242 (92%)

Query: 1   MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 60
           ML SN+IKIPLEPYVYV G SDK LTR+LKISL+LS+G+I +LIFHFNLYVSD+QLTYTA
Sbjct: 70  MLKSNFIKIPLEPYVYVDGRSDKTLTRVLKISLNLSQGNITSLIFHFNLYVSDEQLTYTA 129

Query: 61  ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 120
           ERCP+L+RLV+PAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL+EEIA NCRNF EL
Sbjct: 130 ERCPRLRRLVLPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLIEEIANNCRNFSEL 189

Query: 121 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 180
           KIMGPF++ FASTL  YLPKL+VLSLRC+ L +DALILILD LQ+LEVLNISHCLLI+VP
Sbjct: 190 KIMGPFEIFFASTLAAYLPKLRVLSLRCSMLIKDALILILDSLQSLEVLNISHCLLIEVP 249

Query: 181 LAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDD 240
             PAPK+II++LD TIL+KA+RLR+FLTCM++SCIMCQRTK+DEG+MRWYKYEEGLWK D
Sbjct: 250 APPAPKRIIRELDHTILEKASRLREFLTCMDESCIMCQRTKSDEGLMRWYKYEEGLWKTD 309

Query: 241 EV 242
           EV
Sbjct: 310 EV 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575953|ref|XP_003556100.1| PREDICTED: F-box/LRR-repeat protein At3g48880-like [Glycine max]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/242 (74%), Positives = 215/242 (88%)

Query: 1   MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 60
           ML SN+IKIPLEP+VYV G SD+ LTRILKISLSLS+ SI TLIFHFNLYVSD+QLTYTA
Sbjct: 59  MLRSNFIKIPLEPFVYVDGRSDRTLTRILKISLSLSQQSIMTLIFHFNLYVSDEQLTYTA 118

Query: 61  ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 120
           ERCPQL+RLV+PAWNRIKK G+CKAIR W++LESLTMPSIANPPY++EEI+ +C+NF EL
Sbjct: 119 ERCPQLRRLVLPAWNRIKKPGMCKAIRGWKELESLTMPSIANPPYILEEISTHCKNFSEL 178

Query: 121 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 180
           KIMGP D+ FAS+L  +LPKL++LSLRC+ L +D LILILD LQ+LEVLNISHC+L++  
Sbjct: 179 KIMGPCDIFFASSLAAFLPKLRILSLRCSMLYKDVLILILDNLQHLEVLNISHCVLMEAL 238

Query: 181 LAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDD 240
            AP  K+IIK++D TI QKA+RLR+FLTCMEDSC+MCQRT+ DEG++RWYKYEEGLWK D
Sbjct: 239 PAPQQKRIIKEIDVTIRQKASRLREFLTCMEDSCVMCQRTRTDEGLIRWYKYEEGLWKTD 298

Query: 241 EV 242
           EV
Sbjct: 299 EV 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512841|gb|AFK44482.1| unknown [Medicago truncatula]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/242 (74%), Positives = 212/242 (87%)

Query: 1   MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 60
           ML SN+IKIPLEP+VYV   SDK+LTR+LKISL+LSR SI TLIFHFNLYVSDDQLTYTA
Sbjct: 59  MLRSNFIKIPLEPFVYVDERSDKKLTRLLKISLNLSRMSIVTLIFHFNLYVSDDQLTYTA 118

Query: 61  ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 120
           ERCP LKRLV+PAWNRIK+TG+CKAIR W++LESLTMPSIANPPY +EEIA NC+NF EL
Sbjct: 119 ERCPHLKRLVLPAWNRIKRTGMCKAIRCWKELESLTMPSIANPPYFLEEIATNCKNFSEL 178

Query: 121 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 180
           KIMGP D+ FASTL  ++PKL+ LSLRC+TL RD LILILD L++LEVLNISHC+L++  
Sbjct: 179 KIMGPCDIFFASTLAAFVPKLRFLSLRCSTLYRDVLILILDSLEHLEVLNISHCILMECL 238

Query: 181 LAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDD 240
             P  KKII ++D TI QKA+RLR+F+TCM+DSCIMCQRT+ DEGI+RWYKYEEG WK+D
Sbjct: 239 PPPQHKKIINEIDSTIRQKASRLREFITCMDDSCIMCQRTRTDEGIVRWYKYEEGFWKED 298

Query: 241 EV 242
           EV
Sbjct: 299 EV 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074224|gb|ACJ85472.1| unknown [Medicago truncatula]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/242 (74%), Positives = 211/242 (87%)

Query: 1   MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 60
           ML SN+IKIPLEP+VYV   SDK+LTR+LKISL+LSR SI TLIFHFNLYVSDDQLTYTA
Sbjct: 59  MLRSNFIKIPLEPFVYVDERSDKKLTRLLKISLNLSRMSIVTLIFHFNLYVSDDQLTYTA 118

Query: 61  ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 120
           ERCP LKRLV+PAWNRIK+TG+CKAIR W++LESLTMPSIANPPY +EEIA NC+NF EL
Sbjct: 119 ERCPHLKRLVLPAWNRIKRTGMCKAIRCWKELESLTMPSIANPPYFLEEIATNCKNFSEL 178

Query: 121 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 180
           KIMGP D+ FASTL  ++PKL+ LSLRC+TL RD LILILD L++LEV NISHC+L++  
Sbjct: 179 KIMGPCDIFFASTLAAFVPKLRFLSLRCSTLYRDVLILILDSLEHLEVFNISHCILMECL 238

Query: 181 LAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDD 240
             P  KKII ++D TI QKA+RLR+F+TCM+DSCIMCQRT+ DEGI+RWYKYEEG WK+D
Sbjct: 239 PPPQHKKIINEIDSTIRQKASRLREFITCMDDSCIMCQRTRTDEGIVRWYKYEEGFWKED 298

Query: 241 EV 242
           EV
Sbjct: 299 EV 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535883|ref|XP_003536472.1| PREDICTED: F-box/LRR-repeat protein At3g48880-like [Glycine max]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/242 (74%), Positives = 214/242 (88%)

Query: 1   MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 60
           ML SN+IKIPLEP+VYV G SD+ LTRILKISLSLS+ SI TLIFHFNLYVSD+QLTYTA
Sbjct: 58  MLRSNFIKIPLEPFVYVDGRSDRTLTRILKISLSLSQQSIMTLIFHFNLYVSDEQLTYTA 117

Query: 61  ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 120
           ERCPQL+RLV+PAWNRIKK G+CKAIR W++LESLTMP IANPPY++EEI+ +C+NF EL
Sbjct: 118 ERCPQLRRLVLPAWNRIKKPGMCKAIRGWKELESLTMPCIANPPYILEEISTHCKNFSEL 177

Query: 121 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 180
           KIMGP D+ FAS+L  +LPKL+VLSLRC+ L +D LILILD LQ+LEVLNISHC+L++  
Sbjct: 178 KIMGPCDIFFASSLAAFLPKLRVLSLRCSMLYKDVLILILDSLQHLEVLNISHCVLMEAL 237

Query: 181 LAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDD 240
            AP  K+IIK++D TI QKA+RLR+FLTCMEDSC+MCQRT+ DEG++RWYKYEEGLWK D
Sbjct: 238 PAPQQKRIIKEIDVTIRQKASRLREFLTCMEDSCVMCQRTRTDEGLIRWYKYEEGLWKTD 297

Query: 241 EV 242
           EV
Sbjct: 298 EV 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122416|ref|XP_002318828.1| predicted protein [Populus trichocarpa] gi|222859501|gb|EEE97048.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/242 (73%), Positives = 213/242 (88%), Gaps = 1/242 (0%)

Query: 1   MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 60
           ML SN+IKIPLEPYVYVHGHSDK LTRILKISLSLSRG+I +L FHFNLYVS+D LTYTA
Sbjct: 46  MLESNFIKIPLEPYVYVHGHSDKTLTRILKISLSLSRGNITSLFFHFNLYVSEDHLTYTA 105

Query: 61  ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 120
           +RCP+L+RLV+PAWNR++ T + KAI +W+DLESLTMPSI N P L++ IA NCRNFREL
Sbjct: 106 QRCPRLRRLVLPAWNRVE-TVMIKAIDLWKDLESLTMPSIVNSPRLVQAIATNCRNFREL 164

Query: 121 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 180
           KIMGPFD+ FAS+L  YLP LKVLSLRC+ L +D LI ILD L+ L+VLNISHCLLI +P
Sbjct: 165 KIMGPFDIYFASSLATYLPTLKVLSLRCSKLYKDTLIFILDNLRCLDVLNISHCLLIQIP 224

Query: 181 LAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDD 240
             PAP +I+++LD+TIL+KA+RLRKFLTCM D+CIMCQRT+NDEG+MRWYKYE+GLWK+D
Sbjct: 225 PPPAPGRIVRRLDKTILEKASRLRKFLTCMRDTCIMCQRTRNDEGLMRWYKYEKGLWKED 284

Query: 241 EV 242
           EV
Sbjct: 285 EV 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134733|ref|XP_002321893.1| predicted protein [Populus trichocarpa] gi|222868889|gb|EEF06020.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/242 (71%), Positives = 207/242 (85%), Gaps = 1/242 (0%)

Query: 1   MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 60
           ML SN+IKIPLEPYVYVHGHSDK LTR LKISLSLSRG+I +L FHFNLYVS+D LTYTA
Sbjct: 46  MLKSNFIKIPLEPYVYVHGHSDKTLTRFLKISLSLSRGNITSLFFHFNLYVSEDHLTYTA 105

Query: 61  ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 120
           +RCP+LKRLV+PAWNR++ T + KAI +W+DLESLTMPSI N P L++ IA NCR F EL
Sbjct: 106 QRCPRLKRLVLPAWNRVE-TVMIKAIELWKDLESLTMPSIVNSPRLVQAIATNCRKFSEL 164

Query: 121 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 180
           KIMGPFD+ FAS+L  YLP LKVLSLRC+ L +D LI +LD L  LEVLNISHCLLI+VP
Sbjct: 165 KIMGPFDIYFASSLVTYLPTLKVLSLRCSMLYKDTLIFVLDNLCCLEVLNISHCLLIEVP 224

Query: 181 LAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDD 240
             PAP++I+++LD+TIL+KA+ L  FL CM D+CIMCQ+T+NDEG+MRWYKY+EGLWK+D
Sbjct: 225 PPPAPRRIVRQLDKTILEKASHLHDFLACMSDTCIMCQKTRNDEGLMRWYKYDEGLWKED 284

Query: 241 EV 242
           EV
Sbjct: 285 EV 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470694|ref|XP_002262912.1| PREDICTED: F-box/LRR-repeat protein At3g48880 [Vitis vinifera] gi|147841766|emb|CAN62210.1| hypothetical protein VITISV_008091 [Vitis vinifera]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/247 (71%), Positives = 214/247 (86%), Gaps = 7/247 (2%)

Query: 2   LISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAE 61
           L S++IKIPLEPYVYV   SDK LTR+LKISL+LS+G+IR+LIFHFNLY++DDQLTY AE
Sbjct: 71  LESHFIKIPLEPYVYVSDQSDKSLTRLLKISLNLSQGNIRSLIFHFNLYLNDDQLTYIAE 130

Query: 62  RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELK 121
           RCP+L+RLV+PAWNRIKK+GICKAIRMW+DLESLTMPSI NPPYLMEEI++NC NFRELK
Sbjct: 131 RCPRLRRLVLPAWNRIKKSGICKAIRMWKDLESLTMPSIENPPYLMEEISKNCNNFRELK 190

Query: 122 IMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV-- 179
           IMGP  + FA+TL  +LP+LK+LSLRC+ L ++AL+ IL+GL++LEVLNISHCLLID   
Sbjct: 191 IMGPCHVFFANTLVAFLPRLKILSLRCSVLLKEALLSILEGLKHLEVLNISHCLLIDSQR 250

Query: 180 ----PLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEG 235
               PL P  K+++K+LD +IL+ A+RLR+FLTCM DSC MC+RT NDEG+MRWYKYEEG
Sbjct: 251 MNAQPLPPM-KRVMKELDESILKAASRLREFLTCMNDSCTMCERTINDEGLMRWYKYEEG 309

Query: 236 LWKDDEV 242
           LWK DE 
Sbjct: 310 LWKTDEA 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741053|emb|CBI31784.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 176/247 (71%), Positives = 214/247 (86%), Gaps = 7/247 (2%)

Query: 2   LISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAE 61
           L S++IKIPLEPYVYV   SDK LTR+LKISL+LS+G+IR+LIFHFNLY++DDQLTY AE
Sbjct: 60  LESHFIKIPLEPYVYVSDQSDKSLTRLLKISLNLSQGNIRSLIFHFNLYLNDDQLTYIAE 119

Query: 62  RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELK 121
           RCP+L+RLV+PAWNRIKK+GICKAIRMW+DLESLTMPSI NPPYLMEEI++NC NFRELK
Sbjct: 120 RCPRLRRLVLPAWNRIKKSGICKAIRMWKDLESLTMPSIENPPYLMEEISKNCNNFRELK 179

Query: 122 IMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV-- 179
           IMGP  + FA+TL  +LP+LK+LSLRC+ L ++AL+ IL+GL++LEVLNISHCLLID   
Sbjct: 180 IMGPCHVFFANTLVAFLPRLKILSLRCSVLLKEALLSILEGLKHLEVLNISHCLLIDSQR 239

Query: 180 ----PLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEG 235
               PL P  K+++K+LD +IL+ A+RLR+FLTCM DSC MC+RT NDEG+MRWYKYEEG
Sbjct: 240 MNAQPLPPM-KRVMKELDESILKAASRLREFLTCMNDSCTMCERTINDEGLMRWYKYEEG 298

Query: 236 LWKDDEV 242
           LWK DE 
Sbjct: 299 LWKTDEA 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229043|ref|NP_190457.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|30693105|ref|NP_850671.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75264627|sp|Q9M2Z5.1|FBL53_ARATH RecName: Full=F-box/LRR-repeat protein At3g48880 gi|7576226|emb|CAB87916.1| putative protein [Arabidopsis thaliana] gi|15028347|gb|AAK76650.1| unknown protein [Arabidopsis thaliana] gi|19310705|gb|AAL85083.1| unknown protein [Arabidopsis thaliana] gi|332644947|gb|AEE78468.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|332644948|gb|AEE78469.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 167/241 (69%), Positives = 208/241 (86%), Gaps = 2/241 (0%)

Query: 4   SNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERC 63
           S++IKIPLEPYVYV   SD+ LTRILK+S++LS GS RTLIFHFNL++SDDQLTYTAERC
Sbjct: 64  SSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERC 123

Query: 64  PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIM 123
           P L+R+V+PAWNRIKKTGICKAIR+W+DLESLTMPSIANPPYL+ EIA+NC+NF+ELKIM
Sbjct: 124 PGLRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIM 183

Query: 124 GPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP-LA 182
           GPF++ FA+TL   LP +K LS+RC+ + R+AL+ ILDGL +LEVLNISH  L++     
Sbjct: 184 GPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSGWQ 243

Query: 183 PAPKKIIKKLDRTILQKAARLRKFLTCMED-SCIMCQRTKNDEGIMRWYKYEEGLWKDDE 241
           P  K I+++LD+TI++K ARL+KFLTCM+  +C+MCQRT+NDEGI+RWYKYEEG WK DE
Sbjct: 244 PQQKVIVRELDKTIMEKTARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWKVDE 303

Query: 242 V 242
           V
Sbjct: 304 V 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2099443	309	AT3G48880 "AT3G48880" [Arabido	0.956	0.773	0.676	2.3e-87
TAIR|locus:2139697	333	AT4G11580 [Arabidopsis thalian	0.812	0.609	0.278	5.7e-20
ZFIN|ZDB-GENE-040426-2440	310	fbxl15 "F-box and leucine-rich	0.532	0.429	0.270	0.00023
UNIPROTKB|E6ZHJ8	292	fbxl15 "F-box/LRR-repeat prote	0.524	0.448	0.291	0.00027
UNIPROTKB|Q58DG6	436	FBXL20 "F-box/LRR-repeat prote	0.56	0.321	0.256	0.00055
UNIPROTKB|Q96IG2	436	FBXL20 "F-box/LRR-repeat prote	0.56	0.321	0.256	0.00055
MGI|MGI:1919444	436	Fbxl20 "F-box and leucine-rich	0.56	0.321	0.256	0.00055

TAIR|locus:2099443 AT3G48880 "AT3G48880" [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 163/241 (67%), Positives = 201/241 (83%)

Query:     4 SNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERC 63
             S++IKIPLEPYVYV   SD+ LTRILK+S++LS GS RTLIFHFNL++SDDQLTYTAERC
Sbjct:    64 SSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERC 123

Query:    64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIM 123
             P L+R+V+PAWNRIKKTGICKAIR+W+DLESLTMPSIANPPYL+ EIA+NC+NF+ELKIM
Sbjct:   124 PGLRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIM 183

Query:   124 GPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVXXXX 183
             GPF++ FA+TL   LP +K LS+RC+ + R+AL+ ILDGL +LEVLNISH  L++     
Sbjct:   184 GPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSGWQ 243

Query:   184 -XXXXXXXXXDRTILQKAARLRKFLTCMED-SCIMCQRTKNDEGIMRWYKYEEGLWKDDE 241
                       D+TI++K ARL+KFLTCM+  +C+MCQRT+NDEGI+RWYKYEEG WK DE
Sbjct:   244 PQQKVIVRELDKTIMEKTARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWKVDE 303

Query:   242 V 242
             V
Sbjct:   304 V 304

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139697 AT4G11580 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 61/219 (27%), Positives = 111/219 (50%)

Query:    28 ILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIR 87
             +++IS  LSR + + L F+FN Y+ ++ L + AE+ P +++L +P W    +  +  A  
Sbjct:   122 LVEIS-KLSRMAPKNLFFNFNSYIQENGLKFAAEKMPNIEKLALPIWCYQNEKSLRFAFS 180

Query:    88 MWRDLESLTMPS--IANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLS 145
              W++L++L +      +  +  + + ++C N   LK +G  +   +  +  YL  LK LS
Sbjct:   181 QWKNLKTLIIAHEHSFSGRFDFKAVGESCSNLTNLKYLGRLEEYTSREIVSYLHSLKRLS 240

Query:   146 LRCTTLNRDALILILDGLQNLEVLNISHCLLIDVXXXXXXXXXXXXXDRTILQKAA-RLR 204
             LRC  ++  A+   + GL NL +LN+SHC                  D  ++  A  +L 
Sbjct:   241 LRCFLVSSIAVYRFITGLPNLTILNVSHCK----NPYDYFLPIAKSIDNYVITAATQKLE 296

Query:   205 KFLTCMEDSCIMCQRTKNDEGIMRW-YKYEEGLWKDDEV 242
             KF+TC  D C++C+    D    R+   Y   +W++DE+
Sbjct:   297 KFITCPHD-CMICK----DR--CRYSLSYLAEVWRNDEI 328

GO:0005634 "nucleus" evidence=ISM

ZFIN|ZDB-GENE-040426-2440 fbxl15 "F-box and leucine-rich repeat protein 15" [Danio rerio (taxid:7955)]

 Score = 114 (45.2 bits), Expect = 0.00023, P = 0.00023
 Identities = 37/137 (27%), Positives = 64/137 (46%)

Query:    24 QLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGIC 83
             QL+R   +++SLS   ++ L      +V    L   A+ CP L+ L + A  ++K   +C
Sbjct:   137 QLSRRALVAVSLSCPRLQHLSLAHCEWVDSLALRSLADHCPMLRSLDLTACRQLKDPAVC 196

Query:    84 KAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFAS--TLNMYLPK 140
                    +L +L++   AN     +EE+A+ CR    L + G   +   +  TL  Y PK
Sbjct:   197 YLAGKCPELRALSVAVNANITDTAVEEVAKKCREMERLDLTGCLRVRNEAIRTLAEYCPK 256

Query:   141 LKVLSLR-CTTLNRDAL 156
             L+ L +  C  +   +L
Sbjct:   257 LQSLKVNHCHNVTESSL 273

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0030282 "bone mineralization" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

UNIPROTKB|E6ZHJ8 fbxl15 "F-box/LRR-repeat protein 15" [Dicentrarchus labrax (taxid:13489)]

 Score = 113 (44.8 bits), Expect = 0.00027, P = 0.00027
 Identities = 40/137 (29%), Positives = 66/137 (48%)

Query:    25 LTRILKISLSLSRGSIRTL-IFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGIC 83
             LTR   +++SLS   ++ L + H   +V    L   A+ C  L+ + + A  ++K   IC
Sbjct:   120 LTRHSLVAVSLSCMHLQHLGLAHCE-WVDSLSLRSLADHCGGLQSIDLTACRQLKDDAIC 178

Query:    84 KAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFAS--TLNMYLPK 140
                +    L SL++   AN     +EE+A+NCR   +L + G   +   S  TL  Y PK
Sbjct:   179 YLAKKCLKLRSLSLAVNANITDESVEEVAKNCRGLEQLDLTGCLRVRNQSIRTLAEYCPK 238

Query:   141 LKVLSLR-CTTLNRDAL 156
             L+ L +  C  +   +L
Sbjct:   239 LQSLKVNHCHNVTESSL 255

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0030282 "bone mineralization" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
 Identities = 37/144 (25%), Positives = 61/144 (42%)

Query:    38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTM 97
             G ++ L       + D+ L Y    CP+L  L +    +I   G+    R    L+SL  
Sbjct:   195 GGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA 254

Query:    98 PSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFA--STLNMYLPKLKVLSLR-CTTLNR 153
                +N    ++  + QNC   R L++     L     +TL     +L+ + L  C  +  
Sbjct:   255 SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITD 314

Query:   154 DALILILDGLQNLEVLNISHCLLI 177
               LI +      L+VL++SHC LI
Sbjct:   315 STLIQLSIHCPRLQVLSLSHCELI 338

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
 Identities = 37/144 (25%), Positives = 61/144 (42%)

Query:    38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTM 97
             G ++ L       + D+ L Y    CP+L  L +    +I   G+    R    L+SL  
Sbjct:   195 GGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA 254

Query:    98 PSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFA--STLNMYLPKLKVLSLR-CTTLNR 153
                +N    ++  + QNC   R L++     L     +TL     +L+ + L  C  +  
Sbjct:   255 SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITD 314

Query:   154 DALILILDGLQNLEVLNISHCLLI 177
               LI +      L+VL++SHC LI
Sbjct:   315 STLIQLSIHCPRLQVLSLSHCELI 338

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]

 Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
 Identities = 37/144 (25%), Positives = 61/144 (42%)

Query:    38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTM 97
             G ++ L       + D+ L Y    CP+L  L +    +I   G+    R    L+SL  
Sbjct:   195 GGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA 254

Query:    98 PSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFA--STLNMYLPKLKVLSLR-CTTLNR 153
                +N    ++  + QNC   R L++     L     +TL     +L+ + L  C  +  
Sbjct:   255 SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITD 314

Query:   154 DALILILDGLQNLEVLNISHCLLI 177
               LI +      L+VL++SHC LI
Sbjct:   315 STLIQLSIHCPRLQVLSLSHCELI 338


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.141   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       237   0.00090  113 3  11 22  0.48    32
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  198 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:16
  No. of threads or processors used:  24
  Search cpu time:  20.01u 0.06s 20.07t   Elapsed:  00:00:14
  Total cpu time:  20.01u 0.06s 20.07t   Elapsed:  00:00:30
  Start:  Fri May 10 18:01:31 2013   End:  Fri May 10 18:02:01 2013

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2Z5	FBL53_ARATH	No assigned EC number	0.6929	0.956	0.7734	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XII001171 hypothetical protein (291 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
KOG4341	483	consensus F-box protein containing LRR [General fu	99.82
KOG4341	483	consensus F-box protein containing LRR [General fu	99.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.65
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.41
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.34
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.82
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.71
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.71
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.4
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.28
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.12
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.08
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.91
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.59
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.55
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.5
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.43
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.42
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.17
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.15
PLN03150	623	hypothetical protein; Provisional	97.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.48
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.4
KOG4308	478	consensus LRR-containing protein [Function unknown	96.34
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.22
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.13
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.02
PLN03150	623	hypothetical protein; Provisional	95.93
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.59
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.54
KOG4308	478	consensus LRR-containing protein [Function unknown	95.19
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.06
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	94.55
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	94.12
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	94.05
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.9
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	93.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	92.55
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	92.27
PRK15386	426	type III secretion protein GogB; Provisional	92.13
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	92.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	90.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	90.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	89.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	89.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	88.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	87.94
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	87.9
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	87.64
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	86.45
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	83.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	83.09
KOG0617	264	consensus Ras suppressor protein (contains leucine	82.41
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	81.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	81.49
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	80.54

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.82  E-value=2.2e-21  Score=171.93  Aligned_cols=174  Identities=19%  Similarity=0.292  Sum_probs=160.6

Q ss_pred             CCCcC----CcceeeecCCCchHHHHHHHH--HHHhcCCCccEEE-ecCCCCCCHHHHHHHHhhCC-CCcEEEcCCCCCC
Q 025607            6 YIKIP----LEPYVYVHGHSDKQLTRILKI--SLSLSRGSIRTLI-FHFNLYVSDDQLTYTAERCP-QLKRLVMPAWNRI   77 (250)
Q Consensus         6 ~~~~p----l~if~~l~~~~~~~l~~v~~~--~~~~~~~~l~~L~-l~~~~~i~d~~L~~i~~~c~-~L~~L~L~~c~~i   77 (250)
                      -..+|    +++|+|||..++++++++|+.  ..+.+++.|++++ +.+...+...++..+..+|. .|+.|++.||..+
T Consensus        72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v  151 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAV  151 (483)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccC
Confidence            34566    899999999999999999999  5778999999995 56677888889999999996 4999999999999


Q ss_pred             CHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCH
Q 025607           78 KKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNR  153 (250)
Q Consensus        78 td~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd  153 (250)
                      .+..+..+..+||++++|++.+| ++||..+..+++.|++|++|++.+|  +|+..+..+++.||+|++|++ +|..|++
T Consensus       152 ~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~  231 (483)
T KOG4341|consen  152 GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG  231 (483)
T ss_pred             CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence            99999999999999999999999 9999999999999999999999998  899999999999999999999 8999999


Q ss_pred             HHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          154 DALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       154 ~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      .|+..+.+||..|+.+-.+||....+
T Consensus       232 ~gv~~~~rG~~~l~~~~~kGC~e~~l  257 (483)
T KOG4341|consen  232 NGVQALQRGCKELEKLSLKGCLELEL  257 (483)
T ss_pred             CcchHHhccchhhhhhhhcccccccH
Confidence            99999999999999999999988763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.73  E-value=4e-19  Score=157.66  Aligned_cols=144  Identities=22%  Similarity=0.289  Sum_probs=95.8

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNC  114 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c  114 (250)
                      .|++++.+.+.+++.+||+.+..+++.|++|+.|+|..|..+|+..+..++..||+|++|++++| .+++..++++.+.|
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            34555555555555555555555555555555555555555555555555555555555555555 55555555555555


Q ss_pred             CCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          115 RNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       115 ~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      .+++.+.+.||  ..++.+..++.+++.+.++++ .|+.+||.++..+..+|..|+.|+.++|..+++
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d  309 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD  309 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence            55555555556  566677777777788888888 888888888888888888888888888888774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.1e-16  Score=137.11  Aligned_cols=171  Identities=18%  Similarity=0.163  Sum_probs=134.3

Q ss_pred             CCCcC----CcceeeecCCCchHHHHHHHHH--HHhcCCCccEEEecCC-------------------------------
Q 025607            6 YIKIP----LEPYVYVHGHSDKQLTRILKIS--LSLSRGSIRTLIFHFN-------------------------------   48 (250)
Q Consensus         6 ~~~~p----l~if~~l~~~~~~~l~~v~~~~--~~~~~~~l~~L~l~~~-------------------------------   48 (250)
                      |-.+|    +.||++|-..++.+++.||+.+  ++++.+.|+.+++.+.                               
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prla  177 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLA  177 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhh
Confidence            45677    8999999999999999999984  4466677777766421                               


Q ss_pred             ------------------------------------------CCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH
Q 025607           49 ------------------------------------------LYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI   86 (250)
Q Consensus        49 ------------------------------------------~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~   86 (250)
                                                                ..++|.+...||+ ..+|+.|+|++|+.+|..++..++
T Consensus       178 e~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~  256 (419)
T KOG2120|consen  178 EHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLL  256 (419)
T ss_pred             hhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHH
Confidence                                                      1233444444443 457888999999999999999999


Q ss_pred             hcCCCCCEEEecCCCCCHHHHHH-HHHhCCCCceeEecCC---CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHh
Q 025607           87 RMWRDLESLTMPSIANPPYLMEE-IAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILD  161 (250)
Q Consensus        87 ~~c~~L~~L~Ls~c~~~d~~l~~-i~~~c~~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~  161 (250)
                      .+|..|.+|+|++|..+.+.+.+ ++.--++|+.|+++|+   +.+..+..+++.||+|.+||| .++.+++ ++...+.
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~  335 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFF  335 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHH
Confidence            99999999999999554444444 4555689999999998   777888899999999999999 7888998 5555566


Q ss_pred             cCCCCcEEeeeCCCCcC
Q 025607          162 GLQNLEVLNISHCLLID  178 (250)
Q Consensus       162 ~c~~L~~Ldls~C~~i~  178 (250)
                      ..+.|++|.++.|..+.
T Consensus       336 kf~~L~~lSlsRCY~i~  352 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYDII  352 (419)
T ss_pred             hcchheeeehhhhcCCC
Confidence            78999999999998875

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.54  E-value=2.6e-14  Score=132.08  Aligned_cols=160  Identities=24%  Similarity=0.371  Sum_probs=121.6

Q ss_pred             CCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecC-C-CC--CHHHHHHHHHhCCCCceeEecC
Q 025607           49 LYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-I-AN--PPYLMEEIAQNCRNFRELKIMG  124 (250)
Q Consensus        49 ~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~-c-~~--~d~~l~~i~~~c~~L~~L~L~~  124 (250)
                      ..+++..+..+...+|+|+.|.+.+|..+++.++..++..|++|++|++++ + ..  .......++..|++|++|+++.
T Consensus       173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  252 (482)
T KOG1947|consen  173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG  252 (482)
T ss_pred             ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence            356677777888788999999999999999888888888999999999987 3 32  2333555788889999999988


Q ss_pred             C--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhHHHHHHHH
Q 025607          125 P--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAA  201 (250)
Q Consensus       125 ~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~~i~~~~~  201 (250)
                      +  ++|.++.+++..||+|+.|.+ .|..+|++|+.+++.+||.|++|++++|..+++.          .+ ..+...++
T Consensus       253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~----------~l-~~~~~~c~  321 (482)
T KOG1947|consen  253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS----------GL-EALLKNCP  321 (482)
T ss_pred             hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH----------HH-HHHHHhCc
Confidence            7  789999999988999999998 5666899999999999999999999999888642          23 33355566


Q ss_pred             hhhhhhcccccccccccc
Q 025607          202 RLRKFLTCMEDSCIMCQR  219 (250)
Q Consensus       202 ~L~~l~~c~~~~c~~c~~  219 (250)
                      ++++|....-.+|....+
T Consensus       322 ~l~~l~~~~~~~c~~l~~  339 (482)
T KOG1947|consen  322 NLRELKLLSLNGCPSLTD  339 (482)
T ss_pred             chhhhhhhhcCCCccHHH
Confidence            677665443333443333

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.51  E-value=6e-14  Score=129.67  Aligned_cols=140  Identities=21%  Similarity=0.270  Sum_probs=121.0

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCC-CCCCCHHH--HHHHHhcCCCCCEEEecCC-CCCHHHHHHHH
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPA-WNRIKKTG--ICKAIRMWRDLESLTMPSI-ANPPYLMEEIA  111 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~-c~~itd~~--l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~  111 (250)
                      .++.++.+.+..+..+++..+..++..||+|+.|++++ |..++..+  .......|++|++|++++| .++|.++..++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            47888999888888999999999999999999999998 45555443  4457788999999999999 49999999999


Q ss_pred             HhCCCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          112 QNCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       112 ~~c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      ..||+|++|.+.+|  ++|+++.++++.||+|++|++ .|..++|.++..++.+||+|+.|.+..+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN  332 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence            99999999998888  799999999999999999999 78889999999999999988876655554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=3e-13  Score=116.25  Aligned_cols=141  Identities=15%  Similarity=0.218  Sum_probs=121.4

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC--CCCHHHHHHHHHh
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQN  113 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c--~~~d~~l~~i~~~  113 (250)
                      -..++++++++.+..++...+..+...|..|..|+|+.|...++.--..+..--++|..|+|+||  ++.+..+..+++.
T Consensus       232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            35688999999999999999999999999999999999987777633333344589999999999  7788899999999


Q ss_pred             CCCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          114 CRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       114 c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      ||+|.+|+|+.+  +++..+.++. .++.|++|.+ +|..|..+.+.. +...|.|.+||+.||..-+
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~vsdt  377 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCVSDT  377 (419)
T ss_pred             CCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeee-eccCcceEEEEeccccCch
Confidence            999999999998  7887777776 7999999999 888888887765 4678999999999997643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.34  E-value=4.9e-11  Score=104.84  Aligned_cols=136  Identities=24%  Similarity=0.255  Sum_probs=94.1

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHh---hC-CCCcEEEcCCCCCCCHH---HHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAE---RC-PQLKRLVMPAWNRIKKT---GICKAIRMWRDLESLTMPSIANPPYLMEEI  110 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~---~c-~~L~~L~L~~c~~itd~---~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i  110 (250)
                      ++++.|+++.+. +++..+..+..   .+ ++|+.|++++|. ++..   .+...+..+++|++|++++|.+++..+..+
T Consensus       108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  185 (319)
T cd00116         108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL  185 (319)
T ss_pred             CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence            668888887654 56555554432   34 778888888774 5533   344455667788888888888777666665


Q ss_pred             HHh---CCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHHhcC----CCCcEEeeeCCC
Q 025607          111 AQN---CRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILILDGL----QNLEVLNISHCL  175 (250)
Q Consensus       111 ~~~---c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~~~c----~~L~~Ldls~C~  175 (250)
                      +..   +++|++|+++++ +++..+..++   ..+++|++|+++++.+++.++..+...+    ++|++|++++|.
T Consensus       186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            543   358888888877 7666555443   3567888888877888888887777664    688888888884

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.28  E-value=8.6e-11  Score=103.27  Aligned_cols=137  Identities=19%  Similarity=0.160  Sum_probs=98.1

Q ss_pred             CCCccEEEecCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHH---HHhcC-CCCCEEEecCCCCCHHHHHHH
Q 025607           37 RGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICK---AIRMW-RDLESLTMPSIANPPYLMEEI  110 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i--~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~---~~~~c-~~L~~L~Ls~c~~~d~~l~~i  110 (250)
                      .++++.+.++++...  ....+..+... ++|++|++++| .+++.++..   .+..+ ++|++|++++|.++...+..+
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            678888888876543  23344444444 67999999876 577655544   34556 888999999998875544443


Q ss_pred             ---HHhCCCCceeEecCC-CCHHHHHHHHhc---CCCccEEEeecCCCCHHHHHHH---HhcCCCCcEEeeeCCC
Q 025607          111 ---AQNCRNFRELKIMGP-FDLLFASTLNMY---LPKLKVLSLRCTTLNRDALILI---LDGLQNLEVLNISHCL  175 (250)
Q Consensus       111 ---~~~c~~L~~L~L~~~-i~d~~~~~i~~~---~~~L~~L~L~~~~itd~~l~~i---~~~c~~L~~Ldls~C~  175 (250)
                         ...+++|++|+++++ +++.++..+++.   +++|++|+++++.+++.++..+   +..+|+|++|++++|.
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence               345678999999888 887776666543   4599999998888888876655   3457889999999985

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.82  E-value=1.9e-08  Score=97.70  Aligned_cols=166  Identities=19%  Similarity=0.201  Sum_probs=119.9

Q ss_pred             HHHHHHH-HHHhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 025607           25 LTRILKI-SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP  103 (250)
Q Consensus        25 l~~v~~~-~~~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~  103 (250)
                      ++.+.+. .-+.+..+|+.|++++...++..-...++..+|+|++|.+++= .+..+.|..+..++|+|.+||+|+++++
T Consensus       108 i~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  108 IISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCcc
Confidence            4445555 4456788999999999989999999999999999999999864 4444558889999999999999999887


Q ss_pred             HHHHHHHHHhCCCCceeEecCC-CC-HHHHHHHHhcCCCccEEEeecCCCCHHH--HHHHH---hcCCCCcEEeeeCCCC
Q 025607          104 PYLMEEIAQNCRNFRELKIMGP-FD-LLFASTLNMYLPKLKVLSLRCTTLNRDA--LILIL---DGLQNLEVLNISHCLL  176 (250)
Q Consensus       104 d~~l~~i~~~c~~L~~L~L~~~-i~-d~~~~~i~~~~~~L~~L~L~~~~itd~~--l~~i~---~~c~~L~~Ldls~C~~  176 (250)
                      +-  ..|+ +.+||+.|.+..- +. ...+..+. .+.+|+.||++...-.+..  +...+   ..+|+|+.||.|+-  
T Consensus       187 nl--~GIS-~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT--  260 (699)
T KOG3665|consen  187 NL--SGIS-RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT--  260 (699)
T ss_pred             Cc--HHHh-ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc--
Confidence            54  3333 4688998888665 43 35666676 7899999999554433322  33322   23799999999842  


Q ss_pred             cCCCCCCChhHHHhhhhHHHHHHHHhhhhhh
Q 025607          177 IDVPLAPAPKKIIKKLDRTILQKAARLRKFL  207 (250)
Q Consensus       177 i~~~~~~~~~~~i~~~~~~i~~~~~~L~~l~  207 (250)
                        +..        .++.+.+++.-++|+.+.
T Consensus       261 --di~--------~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  261 --DIN--------EEILEELLNSHPNLQQIA  281 (699)
T ss_pred             --chh--------HHHHHHHHHhCccHhhhh
Confidence              211        455566666666777754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.71  E-value=1e-07  Score=83.78  Aligned_cols=140  Identities=22%  Similarity=0.239  Sum_probs=88.5

Q ss_pred             cCCCccEEEecCCCCCC--HHHHHHHHhhCCCCcEEEcCCCCCCCHHHH---HHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 025607           36 SRGSIRTLIFHFNLYVS--DDQLTYTAERCPQLKRLVMPAWNRIKKTGI---CKAIRMWRDLESLTMPSIANPPYLMEEI  110 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~--d~~L~~i~~~c~~L~~L~L~~c~~itd~~l---~~~~~~c~~L~~L~Ls~c~~~d~~l~~i  110 (250)
                      +.+.++.+....++.-+  -..+..+.+.+|.|+.+.++.. .|..+|+   ...+.+||+|+.|||..|.++..+=.++
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            45566666554433222  2234444556778888877743 4544443   3346678888888888776666555555


Q ss_pred             HH---hCCCCceeEecCC-CCHHHHHHHH----hcCCCccEEEeecCCCCHHHHHHHHhc---CCCCcEEeeeCCCC
Q 025607          111 AQ---NCRNFRELKIMGP-FDLLFASTLN----MYLPKLKVLSLRCTTLNRDALILILDG---LQNLEVLNISHCLL  176 (250)
Q Consensus       111 ~~---~c~~L~~L~L~~~-i~d~~~~~i~----~~~~~L~~L~L~~~~itd~~l~~i~~~---c~~L~~Ldls~C~~  176 (250)
                      ++   ..|+|++|+++.| +.+.++.+++    +..|+|+.|.+.+|.||.++...+...   -|.|+.|+|++|..
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            53   3467778888887 6665555544    356788888887788887776555432   47788888888875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=5.5e-09  Score=94.11  Aligned_cols=138  Identities=18%  Similarity=0.172  Sum_probs=94.6

Q ss_pred             CccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCc
Q 025607           39 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  118 (250)
Q Consensus        39 ~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~  118 (250)
                      .|+.+.+.. ..+.+......++.||+++.|+|++.---....+.+++..+|+|+.|+|+.+.+....=.......++|+
T Consensus       122 kL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  122 KLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             hhhheeecC-ccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            455666653 3455544446677899999999997655577888999999999999999998432111111112568899


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCccEEEeecC-CCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          119 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCT-TLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       119 ~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~-~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      .|.+++| ++.+.+..++..+|+|+.|.|..| .+.-.....  +-...|+.|||++...++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~  261 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDF  261 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccc
Confidence            9999999 999999999999999999999555 332222111  1234567777777666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.65  E-value=1.8e-07  Score=82.28  Aligned_cols=142  Identities=18%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             CCCccEEEecCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHH------------HHHHHhcCCCCCEEEecCCCC
Q 025607           37 RGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTG------------ICKAIRMWRDLESLTMPSIAN  102 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i--~d~~L~~i~~~c~~L~~L~L~~c~~itd~~------------l~~~~~~c~~L~~L~Ls~c~~  102 (250)
                      ++.++.|+|+.+.+=  ..+.|..+..+|.+|+.|.|.+| .+...+            ....+..-+.|+.+...+|.+
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            336666666554321  12334444445666666666655 222211            001112223444444444422


Q ss_pred             CHH---HHHHHHHhCCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHH---hcCCCCcEEeee
Q 025607          103 PPY---LMEEIAQNCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNIS  172 (250)
Q Consensus       103 ~d~---~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~---~~c~~L~~Ldls  172 (250)
                      .+.   .+....+.+|.|+++++... +..+++.+++   .+||+|+.|+|+.|..|.+|=.+++   ...|+|+.|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            222   22222344555555555544 3333332222   3566777777766666666644443   334666667777


Q ss_pred             CCCCcCC
Q 025607          173 HCLLIDV  179 (250)
Q Consensus       173 ~C~~i~~  179 (250)
                      .|-.-+.
T Consensus       250 dcll~~~  256 (382)
T KOG1909|consen  250 DCLLENE  256 (382)
T ss_pred             ccccccc
Confidence            7755443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=2.7e-07  Score=83.39  Aligned_cols=126  Identities=19%  Similarity=0.225  Sum_probs=98.8

Q ss_pred             CCCCHHHHHHHHhhC---CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC-CHHHHHHHHHhCCCCceeEecC
Q 025607           49 LYVSDDQLTYTAERC---PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMG  124 (250)
Q Consensus        49 ~~i~d~~L~~i~~~c---~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~-~d~~l~~i~~~c~~L~~L~L~~  124 (250)
                      +.+.--++..|+++-   .+|+.+.|..| .+.+.+....++.||+++.||||++-+ .=..+..|+...|+|+.|+++.
T Consensus       103 K~vE~iGfDki~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~  181 (505)
T KOG3207|consen  103 KQVEFIGFDKIAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS  181 (505)
T ss_pred             ceeEEecHHHHHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc
Confidence            344444556666654   45777888876 677777667889999999999999944 4467888999999999999987


Q ss_pred             C----CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          125 P----FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       125 ~----i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      .    .++....   ..++.|+.|.|+.|.++...+..++..+|+|+.|.+.+...+.
T Consensus       182 Nrl~~~~~s~~~---~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~  236 (505)
T KOG3207|consen  182 NRLSNFISSNTT---LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL  236 (505)
T ss_pred             ccccCCccccch---hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc
Confidence            6    2222221   1678999999999999999999999999999999999986443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.32  E-value=8.7e-08  Score=77.93  Aligned_cols=111  Identities=22%  Similarity=0.237  Sum_probs=37.9

Q ss_pred             HHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHH
Q 025607           58 YTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLN  135 (250)
Q Consensus        58 ~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~  135 (250)
                      .++..+.+|+.|+|+++.--+-++    +..++.|+.|++++|.+++-. ..+.+.+|+|++|.+++. +.+ ..+..++
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~  110 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLS  110 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGG
T ss_pred             chhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHH
Confidence            333344566666666542222122    334566666666666554311 123345666666666655 322 2233333


Q ss_pred             hcCCCccEEEeecCCCCHHH--HHHHHhcCCCCcEEeeeCC
Q 025607          136 MYLPKLKVLSLRCTTLNRDA--LILILDGLQNLEVLNISHC  174 (250)
Q Consensus       136 ~~~~~L~~L~L~~~~itd~~--l~~i~~~c~~L~~Ldls~C  174 (250)
                       .+|+|+.|++.+|.+++..  -..++..+|+|+.||-...
T Consensus       111 -~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  111 -SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             -cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence             5666666666555555332  2234455666666655443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.28  E-value=1.6e-07  Score=76.42  Aligned_cols=141  Identities=17%  Similarity=0.191  Sum_probs=54.4

Q ss_pred             CHHHHHHHHh--hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH
Q 025607           52 SDDQLTYTAE--RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL  128 (250)
Q Consensus        52 ~d~~L~~i~~--~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d  128 (250)
                      |-+.++.++.  .+-+++.|+|.++ .|+.  +..+...+.+|+.|++++|.++.  +..+. .+++|++|++++. +++
T Consensus         5 t~~~i~~~~~~~n~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen    5 TANMIEQIAQYNNPVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S
T ss_pred             ccccccccccccccccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCCCCCc
Confidence            3444444443  3456899999976 4443  33333467899999999997653  22332 3699999999988 554


Q ss_pred             HHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhHHHHHHHHhhhhhhc
Q 025607          129 LFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLT  208 (250)
Q Consensus       129 ~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~~i~~~~~~L~~l~~  208 (250)
                      -. ..+.+.+|+|++|.++.|+|.+-+-..-+..+|+|+.|++.+++--..          ..+-..++...++|+.+..
T Consensus        79 i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----------~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   79 IS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK----------KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS----------TTHHHHHHHH-TT-SEETT
T ss_pred             cc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch----------hhHHHHHHHHcChhheeCC
Confidence            21 134457899999999999987743333456799999999999986543          2355667888888888765


Q ss_pred             c
Q 025607          209 C  209 (250)
Q Consensus       209 c  209 (250)
                      .
T Consensus       148 ~  148 (175)
T PF14580_consen  148 Q  148 (175)
T ss_dssp             E
T ss_pred             E
Confidence            4

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.16  E-value=2.1e-06  Score=86.74  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=18.6

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      .+++|+.|+++.+.++.... .-+.++++|++|++++|.
T Consensus       210 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        210 QMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             CcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCce
Confidence            34555555554444443211 123455666666666664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.12  E-value=3.6e-06  Score=81.99  Aligned_cols=112  Identities=25%  Similarity=0.220  Sum_probs=53.9

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccE
Q 025607           65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV  143 (250)
Q Consensus        65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~  143 (250)
                      +|++|+++|-..++..-..++...+|.|++|.+++-.+..+-+..+.++.|||..|+++++ +++-  ..|+ ++++|+.
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNLQV  199 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh-ccccHHH
Confidence            3444444443333333334444444555555544443333334444444455555555444 3321  2222 4444444


Q ss_pred             EEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          144 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       144 L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      |.+.+-.+....-..-+.+.++|+.||+|.-.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~  235 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD  235 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccc
Confidence            444443333322112245689999999998877664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.08  E-value=2e-06  Score=83.94  Aligned_cols=119  Identities=24%  Similarity=0.280  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHhhCCCCcEEEcCCC--CCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-
Q 025607           49 LYVSDDQLTYTAERCPQLKRLVMPAW--NRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-  125 (250)
Q Consensus        49 ~~i~d~~L~~i~~~c~~L~~L~L~~c--~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-  125 (250)
                      .+++|..+..+. ..++||.|+|++-  ..+.+.    .+.+++.||+|+|||+.++.-. ..++ .|+.|++|...+. 
T Consensus       369 N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~~Lp-~tva-~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  369 NHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLTTLP-DTVA-NLGRLHTLRAHSNQ  441 (1081)
T ss_pred             Ccccccchhhhc-cccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhhhhh-HHHH-hhhhhHHHhhcCCc
Confidence            457777776664 5788999999864  234443    3567899999999999665333 3333 4788999988765 


Q ss_pred             CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          126 FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       126 i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +.-  +..++ ..|+|+.+|++||.++.-.+...... |+|++||++|.....
T Consensus       442 l~~--fPe~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  442 LLS--FPELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV  490 (1081)
T ss_pred             eee--chhhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence            221  11344 68999999999999998777765544 899999999998643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.05  E-value=4.4e-06  Score=84.52  Aligned_cols=86  Identities=17%  Similarity=0.108  Sum_probs=35.5

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      .+++|+.|+|+++. ++. .+...+.++++|+.|++++|.++......++ .+++|+.|+++++ ++......+. .+++
T Consensus       162 ~l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~-~l~~  237 (968)
T PLN00113        162 SFSSLKVLDLGGNV-LVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIG-GLTS  237 (968)
T ss_pred             cCCCCCEEECccCc-ccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHh-cCCC
Confidence            35566666665542 111 0111234455555555555543322222222 2345555555444 2222222222 3444


Q ss_pred             ccEEEeecCCC
Q 025607          141 LKVLSLRCTTL  151 (250)
Q Consensus       141 L~~L~L~~~~i  151 (250)
                      |++|++.++.+
T Consensus       238 L~~L~L~~n~l  248 (968)
T PLN00113        238 LNHLDLVYNNL  248 (968)
T ss_pred             CCEEECcCcee
Confidence            55555544433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=1.3e-05  Score=66.04  Aligned_cols=85  Identities=21%  Similarity=0.303  Sum_probs=67.4

Q ss_pred             CCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcE
Q 025607           92 LESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEV  168 (250)
Q Consensus        92 L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~  168 (250)
                      ++.++-+++.+..++++.+.. ++.++.|.+..|  ++|.++..|+.-.|+|+.|+| .|..||+.|+..+. ..++|+.
T Consensus       103 IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence            577777777788888877754 688888888888  888888888887889999999 58889999988764 5788888


Q ss_pred             EeeeCCCCcC
Q 025607          169 LNISHCLLID  178 (250)
Q Consensus       169 Ldls~C~~i~  178 (250)
                      |.+.+=..+.
T Consensus       181 L~l~~l~~v~  190 (221)
T KOG3864|consen  181 LHLYDLPYVA  190 (221)
T ss_pred             HHhcCchhhh
Confidence            8877655544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=2.7e-05  Score=64.08  Aligned_cols=79  Identities=18%  Similarity=0.204  Sum_probs=63.8

Q ss_pred             CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHHHHhcCCCcc
Q 025607           66 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        66 L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~  142 (250)
                      ++.++-+++ .|..+|+.. +..++.++.|.+..| .+.|..++.++.-.|+|+.|++++|  ||+.++..+. .+++|+
T Consensus       103 IeaVDAsds-~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr  179 (221)
T KOG3864|consen  103 IEAVDASDS-SIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR  179 (221)
T ss_pred             EEEEecCCc-hHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence            555666654 677778766 578888888888888 7888889888888889999999888  8888888887 688888


Q ss_pred             EEEee
Q 025607          143 VLSLR  147 (250)
Q Consensus       143 ~L~L~  147 (250)
                      .|.|.
T Consensus       180 ~L~l~  184 (221)
T KOG3864|consen  180 RLHLY  184 (221)
T ss_pred             HHHhc
Confidence            88883

>PLN03210 Resistant to P

Probab=97.66  E-value=4.3e-05  Score=78.92  Aligned_cols=106  Identities=19%  Similarity=0.304  Sum_probs=59.2

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  139 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~  139 (250)
                      .+++|+.|++++|..++.  +...+ .+++|+.|++++| .+.     .+....++|++|++++. ++. ....+ ..++
T Consensus       800 ~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~-----~~p~~~~nL~~L~Ls~n~i~~-iP~si-~~l~  869 (1153)
T PLN03210        800 NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLR-----TFPDISTNISDLNLSRTGIEE-VPWWI-EKFS  869 (1153)
T ss_pred             CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccc-----cccccccccCEeECCCCCCcc-ChHHH-hcCC
Confidence            456666666666654432  11111 3566666666666 221     11122356777777665 331 11122 2677


Q ss_pred             CccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          140 KLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       140 ~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      +|+.|++ .|+.++.  +..-...++.|+.|++++|..++.
T Consensus       870 ~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        870 NLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             CCCEEECCCCCCcCc--cCcccccccCCCeeecCCCccccc
Confidence            8888888 6666664  333345678888888888887763

syringae 6; Provisional

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.59  E-value=0.0014  Score=56.64  Aligned_cols=65  Identities=26%  Similarity=0.354  Sum_probs=43.3

Q ss_pred             CCCceeEecCC-CCHHHHHHHH----hcCCCccEEEeecCCCCHHHHHHHHh---cCCCCcEEeeeCCCCcCC
Q 025607          115 RNFRELKIMGP-FDLLFASTLN----MYLPKLKVLSLRCTTLNRDALILILD---GLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       115 ~~L~~L~L~~~-i~d~~~~~i~----~~~~~L~~L~L~~~~itd~~l~~i~~---~c~~L~~Ldls~C~~i~~  179 (250)
                      .+|+++++... +-.+++..++    .++++|+.|+|..|..|-.|-..++.   ..|.|+.|.+..|..-+.
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence            46666666555 5555544443    36788888888878888777555543   357788888888876554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.55  E-value=9.1e-05  Score=40.68  Aligned_cols=24  Identities=25%  Similarity=0.564  Sum_probs=17.3

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHH
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAI   86 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~   86 (250)
                      ||+|+.|+|++|..+||.++..++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            567777777777777777776654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.50  E-value=5.6e-05  Score=71.11  Aligned_cols=86  Identities=22%  Similarity=0.279  Sum_probs=55.5

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-----CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCC
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-----FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ  164 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-----i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~  164 (250)
                      .+|++|+|+.+.++. .-+..-...++|++|+|.+.     +.| +..+.. .+|.|++|+|.+|++-.-.=.+ ..+.+
T Consensus       341 ~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~-gl~~LrkL~l~gNqlk~I~krA-fsgl~  416 (873)
T KOG4194|consen  341 SQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFN-GLPSLRKLRLTGNQLKSIPKRA-FSGLE  416 (873)
T ss_pred             HHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhc-cchhhhheeecCceeeecchhh-hccCc
Confidence            555555555553321 11111234578999998765     455 333444 6999999999888765543333 46899


Q ss_pred             CCcEEeeeCCCCcCC
Q 025607          165 NLEVLNISHCLLIDV  179 (250)
Q Consensus       165 ~L~~Ldls~C~~i~~  179 (250)
                      .||+||+.+....+.
T Consensus       417 ~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  417 ALEHLDLGDNAIASI  431 (873)
T ss_pred             ccceecCCCCcceee
Confidence            999999999876553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.43  E-value=0.0022  Score=55.46  Aligned_cols=40  Identities=15%  Similarity=0.227  Sum_probs=33.0

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHH----hcCCCCcEEeeeCCCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILIL----DGLQNLEVLNISHCLL  176 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~----~~c~~L~~Ldls~C~~  176 (250)
                      .-.+|+.+.+..|.|..+|+.+++    ..|.+|+.||++....
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence            336888999988999999988774    5589999999998763

>PLN03210 Resistant to P

Probab=97.42  E-value=0.00012  Score=75.59  Aligned_cols=108  Identities=20%  Similarity=0.285  Sum_probs=72.8

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCCCCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~i~d~~~~~i~~~~~~L  141 (250)
                      +++|+.|+|++|..+..  +...+.++++|+.|+|++| .++. ....+  .+++|+.|++++|-.-.   .+....++|
T Consensus       777 ~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~-LP~~~--~L~sL~~L~Ls~c~~L~---~~p~~~~nL  848 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET-LPTGI--NLESLESLDLSGCSRLR---TFPDISTNI  848 (1153)
T ss_pred             cccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe-eCCCC--CccccCEEECCCCCccc---ccccccccc
Confidence            46788888877754432  3334678889999999888 3331 11111  46889999998882111   122234689


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCC
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP  180 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~  180 (250)
                      +.|+|.++.++.  +..-+..+++|+.|++++|.+++..
T Consensus       849 ~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        849 SDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             CEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCcc
Confidence            999998888874  3334567999999999999998753

syringae 6; Provisional

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.24  E-value=0.00032  Score=38.49  Aligned_cols=24  Identities=13%  Similarity=0.166  Sum_probs=17.0

Q ss_pred             CCCCCEEEecCC-CCCHHHHHHHHH
Q 025607           89 WRDLESLTMPSI-ANPPYLMEEIAQ  112 (250)
Q Consensus        89 c~~L~~L~Ls~c-~~~d~~l~~i~~  112 (250)
                      ||+|++|+|++| .+||.++.++++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            567777777777 677777777664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.00021  Score=62.42  Aligned_cols=108  Identities=19%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH-HHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccE
Q 025607           66 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV  143 (250)
Q Consensus        66 L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~-~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~  143 (250)
                      +.-|.+.+|..-+...+..+...|..+++|||.++.++|- -+.+|..+.|.|+.|+++.. ++.. +..+..-..+|+.
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEE
Confidence            3345556664334445566677777888888888777663 35566777788888888766 3221 1112113447788


Q ss_pred             EEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607          144 LSLRCTTLNRDALILILDGLQNLEVLNISHC  174 (250)
Q Consensus       144 L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C  174 (250)
                      |-|++..++...+...+...|.++.|++|..
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            8778888888777777777888888877766

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.00021  Score=61.83  Aligned_cols=98  Identities=22%  Similarity=0.256  Sum_probs=58.2

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcCCCcc
Q 025607           65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLPKLK  142 (250)
Q Consensus        65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~~~L~  142 (250)
                      +.+.|+..|| .++|-.+   ..+.|.||.|.||-|.|+  ++..+ ..|++|++|.|..+ +.+ +.+..+ +++|+|+
T Consensus        20 ~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvNkIs--sL~pl-~rCtrLkElYLRkN~I~sldEL~YL-knlpsLr   91 (388)
T KOG2123|consen   20 NVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVNKIS--SLAPL-QRCTRLKELYLRKNCIESLDELEYL-KNLPSLR   91 (388)
T ss_pred             HhhhhcccCC-CccHHHH---HHhcccceeEEeeccccc--cchhH-HHHHHHHHHHHHhcccccHHHHHHH-hcCchhh
Confidence            5677777777 5666543   446677888777776554  22222 35777888777554 554 334333 4777787


Q ss_pred             EEEe---ecCCCCHHHHH-HHHhcCCCCcEEe
Q 025607          143 VLSL---RCTTLNRDALI-LILDGLQNLEVLN  170 (250)
Q Consensus       143 ~L~L---~~~~itd~~l~-~i~~~c~~L~~Ld  170 (250)
                      .|.|   -|+.-...-.+ .+++-.|+|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777   23332222233 3455677777774

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.00023  Score=62.17  Aligned_cols=157  Identities=12%  Similarity=0.140  Sum_probs=102.7

Q ss_pred             ccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCce
Q 025607           40 IRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRE  119 (250)
Q Consensus        40 l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~  119 (250)
                      +.-+.++++.-=+......++..|..++.++|.+...-.++.+..++.+.|.|+.|+|+.+.+... +..+..--.||++
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEE
Confidence            334455555444556777889999999999998653335578888999999999999998855432 1222223479999


Q ss_pred             eEecCC-CCHHHHHHHHhcCCCccEEEeecC-----CCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhh
Q 025607          120 LKIMGP-FDLLFASTLNMYLPKLKVLSLRCT-----TLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLD  193 (250)
Q Consensus       120 L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~-----~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~  193 (250)
                      |-|+|. ++-.......+..|+++.|.++-|     .+.|+..+.   --|.++.|...+|.-..          +.+ .
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~----------w~~-~  191 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQL----------WLN-K  191 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHH----------HHH-H
Confidence            999998 777777788888999999988544     234433332   23566677777775321          111 1


Q ss_pred             HHHHHHHHhhhhhhcccc
Q 025607          194 RTILQKAARLRKFLTCME  211 (250)
Q Consensus       194 ~~i~~~~~~L~~l~~c~~  211 (250)
                      ..+....+++..++.|++
T Consensus       192 ~~l~r~Fpnv~sv~v~e~  209 (418)
T KOG2982|consen  192 NKLSRIFPNVNSVFVCEG  209 (418)
T ss_pred             HhHHhhcccchheeeecC
Confidence            223344556666666754

>PLN03150 hypothetical protein; Provisional

Probab=97.04  E-value=0.00073  Score=65.55  Aligned_cols=108  Identities=15%  Similarity=0.162  Sum_probs=70.5

Q ss_pred             CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEE
Q 025607           66 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVL  144 (250)
Q Consensus        66 L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L  144 (250)
                      ++.|+|+++ .++. .+...+.++++|+.|+|++|.++......+ ..+++|+.|+|+++ ++...-..+. .+++|+.|
T Consensus       420 v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLG-QLTSLRIL  495 (623)
T ss_pred             EEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEE
Confidence            677888765 3321 223346678999999999987765444444 45789999999887 5543333444 78899999


Q ss_pred             EeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          145 SLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       145 ~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +|++|.++..--..+.....++..+++.++..+
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCccc
Confidence            998887775433333333456677777765543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.82  E-value=5.9e-05  Score=50.13  Aligned_cols=11  Identities=45%  Similarity=0.706  Sum_probs=4.2

Q ss_pred             CCCCcEEeeeC
Q 025607          163 LQNLEVLNISH  173 (250)
Q Consensus       163 c~~L~~Ldls~  173 (250)
                      +|+|++|++++
T Consensus        48 l~~L~~L~l~~   58 (61)
T PF13855_consen   48 LPNLRYLDLSN   58 (61)
T ss_dssp             STTESEEEETS
T ss_pred             CCCCCEEeCcC
Confidence            33333333333

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.72  E-value=6.2e-05  Score=50.03  Aligned_cols=60  Identities=22%  Similarity=0.249  Sum_probs=40.9

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCC
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTL  151 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~i  151 (250)
                      |+|+.|++++|.++.- .......+++|++|+++++ ++.-...+ ...+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcCCcC
Confidence            6899999999965421 1122346799999999987 43211112 24899999999977653

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.56  E-value=0.0025  Score=39.56  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=21.6

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP  103 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~  103 (250)
                      |+|++|+++++ .+++  +...+.++++|+.|++++|.++
T Consensus         1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCC
Confidence            46777777654 4543  3333566777777777776554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.48  E-value=0.0021  Score=39.91  Aligned_cols=35  Identities=34%  Similarity=0.381  Sum_probs=25.3

Q ss_pred             CCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          139 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       139 ~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      ++|++|++..++|++  +...+.++++|+.|+++++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578888888888885  45546778888888888885

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.0017  Score=55.45  Aligned_cols=85  Identities=20%  Similarity=0.290  Sum_probs=44.2

Q ss_pred             CCCceeEecCC--CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHH--HhcCCCCcEEeeeCCCCcCCCCCCChhHHHh
Q 025607          115 RNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILI--LDGLQNLEVLNISHCLLIDVPLAPAPKKIIK  190 (250)
Q Consensus       115 ~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i--~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~  190 (250)
                      |+|+.|.++..  -...++..++..+|+|++|++++|+|.+  +..+  ++..++|..||+..|.-...          .
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l----------~  132 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNL----------D  132 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcccc----------c
Confidence            45555555444  2223344455555666666666666654  2222  33455666666666654432          1


Q ss_pred             hhhHHHHHHHHhhhhhhcccc
Q 025607          191 KLDRTILQKAARLRKFLTCME  211 (250)
Q Consensus       191 ~~~~~i~~~~~~L~~l~~c~~  211 (250)
                      ..-+.+....++|+.+-+|..
T Consensus       133 dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  133 DYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             cHHHHHHHHhhhhcccccccc
Confidence            233445556666666665533

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.40  E-value=0.0022  Score=56.29  Aligned_cols=106  Identities=19%  Similarity=0.187  Sum_probs=63.9

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLP  139 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~~  139 (250)
                      -.|.++.|++++. .++.-+  . +..+++|++||||++.++  .+.-+-...-|++.|.+++. +.+ .++.    .+-
T Consensus       305 L~Pkir~L~lS~N-~i~~v~--n-La~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIKtL~La~N~iE~LSGL~----KLY  374 (490)
T KOG1259|consen  305 LAPKLRRLILSQN-RIRTVQ--N-LAELPQLQLLDLSGNLLA--ECVGWHLKLGNIKTLKLAQNKIETLSGLR----KLY  374 (490)
T ss_pred             hccceeEEecccc-ceeeeh--h-hhhcccceEeecccchhH--hhhhhHhhhcCEeeeehhhhhHhhhhhhH----hhh
Confidence            3577788887754 333211  1 456678888888877443  22223334467777777655 221 2222    345


Q ss_pred             CccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       140 ~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      .|..|++++|+|..-.-..-+.+.|-|+.|.+.+.+.-
T Consensus       375 SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  375 SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            78888888888875433333456888999888887653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.34  E-value=0.002  Score=60.45  Aligned_cols=143  Identities=16%  Similarity=0.135  Sum_probs=96.1

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCC----CcEEEcCCCCCCCHHHHHH---HHhcCCCCCEEEecCCCCCHHHHH
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQ----LKRLVMPAWNRIKKTGICK---AIRMWRDLESLTMPSIANPPYLME  108 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~----L~~L~L~~c~~itd~~l~~---~~~~c~~L~~L~Ls~c~~~d~~l~  108 (250)
                      ....+..++++++. ++|+....+.+..+.    |+.|.+..| .+++++...   .+.+++.|+.++++.|.+.+.+..
T Consensus       113 t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~  190 (478)
T KOG4308|consen  113 TLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL  190 (478)
T ss_pred             ccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence            35567778888754 558888888765443    677888877 566655444   345577888888888865454444


Q ss_pred             HHHHh-------CCCCceeEecCC-CCHHHHHHHHh---cCCC-ccEEEeecCCCCHHHHHHHHhcC----CCCcEEeee
Q 025607          109 EIAQN-------CRNFRELKIMGP-FDLLFASTLNM---YLPK-LKVLSLRCTTLNRDALILILDGL----QNLEVLNIS  172 (250)
Q Consensus       109 ~i~~~-------c~~L~~L~L~~~-i~d~~~~~i~~---~~~~-L~~L~L~~~~itd~~l~~i~~~c----~~L~~Ldls  172 (250)
                      .+.+.       -.++++|++++| +++.....+..   ..+. +..|++.++.+.|.|+..+....    +.++.++++
T Consensus       191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~  270 (478)
T KOG4308|consen  191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS  270 (478)
T ss_pred             HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence            44332       356888999888 77665555443   3344 66678888889988888776664    345888999


Q ss_pred             CCCCcCCC
Q 025607          173 HCLLIDVP  180 (250)
Q Consensus       173 ~C~~i~~~  180 (250)
                      .|...+.+
T Consensus       271 ~nsi~~~~  278 (478)
T KOG4308|consen  271 RNSITEKG  278 (478)
T ss_pred             cCCccccc
Confidence            88876644

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.22  E-value=0.0036  Score=33.40  Aligned_cols=22  Identities=18%  Similarity=0.149  Sum_probs=9.7

Q ss_pred             CCCCEEEecCCCCCHHHHHHHH
Q 025607           90 RDLESLTMPSIANPPYLMEEIA  111 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~  111 (250)
                      ++|++|+|++|.++++++.+|+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhC
Confidence            4445555555555554444443

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.16  E-value=0.0025  Score=60.38  Aligned_cols=14  Identities=29%  Similarity=0.463  Sum_probs=7.6

Q ss_pred             hcCCCCcEEeeeCC
Q 025607          161 DGLQNLEVLNISHC  174 (250)
Q Consensus       161 ~~c~~L~~Ldls~C  174 (250)
                      ++.|+|+.||+...
T Consensus       218 k~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  218 KRLPKLESLDLNRN  231 (873)
T ss_pred             hhcchhhhhhcccc
Confidence            34555666655544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.13  E-value=0.0022  Score=54.74  Aligned_cols=110  Identities=18%  Similarity=0.092  Sum_probs=67.5

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcCC
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA-NPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLP  139 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~-~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~~  139 (250)
                      .-+|+.|++.++...|-..    +..+|+|+.|.++.+. -....+..++..||+|++|+++++ +.+ ..+..+. .++
T Consensus        42 ~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-~l~  116 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-ELE  116 (260)
T ss_pred             ccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh-hhc
Confidence            3456666665554333322    2456788888888872 234466777788899999999887 543 2333333 677


Q ss_pred             CccEEEeecCCCCH--HHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          140 KLKVLSLRCTTLNR--DALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       140 ~L~~L~L~~~~itd--~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +|..|+++.+..|.  +-=..+..-.|+|++||--.+...
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence            88888885555443  111334555788888865555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.02  E-value=0.0013  Score=62.89  Aligned_cols=57  Identities=25%  Similarity=0.264  Sum_probs=36.2

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhHHHHHHHHhhhhhhcc
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTC  209 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~~i~~~~~~L~~l~~c  209 (250)
                      .+++|+.|+|++|.||.-  .+-.....+|+.||+|.......              ...+.+.+||+++...
T Consensus       243 ~l~~LrrLNLS~N~iteL--~~~~~~W~~lEtLNlSrNQLt~L--------------P~avcKL~kL~kLy~n  299 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITEL--NMTEGEWENLETLNLSRNQLTVL--------------PDAVCKLTKLTKLYAN  299 (1255)
T ss_pred             hhhhhheeccCcCceeee--eccHHHHhhhhhhccccchhccc--------------hHHHhhhHHHHHHHhc
Confidence            567888888888888763  22334467888888888765433              2334455566666544

>PLN03150 hypothetical protein; Provisional

Probab=95.93  E-value=0.0062  Score=59.18  Aligned_cols=83  Identities=19%  Similarity=0.313  Sum_probs=61.6

Q ss_pred             CCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEE
Q 025607           91 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL  169 (250)
Q Consensus        91 ~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~L  169 (250)
                      .++.|+|+++.++......++ .+++|+.|+|+++ ++...-..+. .+++|+.|+|+.|.++... ...+.++++|++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSI-PESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCC-chHHhcCCCCCEE
Confidence            378899998877654444554 4799999999988 5433333344 7899999999888887543 3335689999999


Q ss_pred             eeeCCCC
Q 025607          170 NISHCLL  176 (250)
Q Consensus       170 dls~C~~  176 (250)
                      +++++..
T Consensus       496 ~Ls~N~l  502 (623)
T PLN03150        496 NLNGNSL  502 (623)
T ss_pred             ECcCCcc
Confidence            9999864

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.82  E-value=0.0055  Score=32.66  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=11.2

Q ss_pred             CCccEEEeecCCCCHHHHHHHH
Q 025607          139 PKLKVLSLRCTTLNRDALILIL  160 (250)
Q Consensus       139 ~~L~~L~L~~~~itd~~l~~i~  160 (250)
                      ++|++|+|+.+.|+++|+.+|.
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhC
Confidence            4555666655556666555543

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=0.0052  Score=53.42  Aligned_cols=100  Identities=14%  Similarity=0.072  Sum_probs=74.6

Q ss_pred             HHhcCC---CCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHH
Q 025607           85 AIRMWR---DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILIL  160 (250)
Q Consensus        85 ~~~~c~---~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~  160 (250)
                      +-.+|.   +.+.|+..+|.++|-.   |.+..|.|+.|.|+-+ |+.  +..+ ..|.+|++|.|+-|.|.+-.=..-+
T Consensus        11 ~raK~sdl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIss--L~pl-~rCtrLkElYLRkN~I~sldEL~YL   84 (388)
T KOG2123|consen   11 IRAKCSDLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISS--LAPL-QRCTRLKELYLRKNCIESLDELEYL   84 (388)
T ss_pred             HHHHhhHHHHhhhhcccCCCccHHH---HHHhcccceeEEeecccccc--chhH-HHHHHHHHHHHHhcccccHHHHHHH
Confidence            344554   5678899999988854   4457899999999855 432  2233 3799999999988888876655567


Q ss_pred             hcCCCCcEEeeeCCCCcCCCCCCChhHHHh
Q 025607          161 DGLQNLEVLNISHCLLIDVPLAPAPKKIIK  190 (250)
Q Consensus       161 ~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~  190 (250)
                      ++.|+|+.|.|...+-...++..+++++++
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR  114 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLR  114 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHH
Confidence            899999999999888777777566655554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.60  E-value=0.00079  Score=65.04  Aligned_cols=102  Identities=19%  Similarity=0.232  Sum_probs=45.9

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH-HhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA-QNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~-~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      |.|++|+|++. ++++-.   .+..|+.|++|||++|.++.  +..++ ..|. |..|++.++ ++  .+..|. ++.+|
T Consensus       187 ~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~-L~~L~lrnN~l~--tL~gie-~LksL  256 (1096)
T KOG1859|consen  187 PALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCK-LQLLNLRNNALT--TLRGIE-NLKSL  256 (1096)
T ss_pred             HHhhhhccchh-hhhhhH---HHHhcccccccccccchhcc--ccccchhhhh-heeeeecccHHH--hhhhHH-hhhhh
Confidence            45566666542 343322   34556666666666653221  11111 1233 555555444 22  122222 45566


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      +.||++.|-+++..=...+.....|+.|++.|.+
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            6666655555544322223333445555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.59  E-value=0.0051  Score=50.97  Aligned_cols=88  Identities=17%  Similarity=0.180  Sum_probs=61.5

Q ss_pred             HhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CC-HHHHHHHHhcCCCccEEEeecCCCCHHH-HH-HHHh
Q 025607           86 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FD-LLFASTLNMYLPKLKVLSLRCTTLNRDA-LI-LILD  161 (250)
Q Consensus        86 ~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~-d~~~~~i~~~~~~L~~L~L~~~~itd~~-l~-~i~~  161 (250)
                      +.+.+.|..|.++.+.++.-. ..+....|+|+.|.+.+. +. -..+..++ .||+|++|.+-++.+++.. .+ .++.
T Consensus        60 lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yvl~  137 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYVLY  137 (233)
T ss_pred             CCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccCceeEEEE
Confidence            567788889999988765321 233445688999999776 32 23355566 7899999999888888764 22 3455


Q ss_pred             cCCCCcEEeeeCCC
Q 025607          162 GLQNLEVLNISHCL  175 (250)
Q Consensus       162 ~c~~L~~Ldls~C~  175 (250)
                      ..|+|+.||.+.-.
T Consensus       138 klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  138 KLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCcceEeehhhhh
Confidence            67999999988643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.54  E-value=0.00091  Score=63.82  Aligned_cols=22  Identities=23%  Similarity=0.156  Sum_probs=12.0

Q ss_pred             cCCCccEEEeecCCCCHHHHHH
Q 025607          137 YLPKLKVLSLRCTTLNRDALIL  158 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~  158 (250)
                      .+++|+.|.+..|+++-+|+..
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCcc
Confidence            3456666666556655555443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.19  E-value=0.017  Score=54.33  Aligned_cols=141  Identities=15%  Similarity=0.088  Sum_probs=81.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHh-------hCCCCcEEEcCCCCCCCHHHHHH---HHhcCCC-CCEEEecCCCCCHH
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAE-------RCPQLKRLVMPAWNRIKKTGICK---AIRMWRD-LESLTMPSIANPPY  105 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~-------~c~~L~~L~L~~c~~itd~~l~~---~~~~c~~-L~~L~Ls~c~~~d~  105 (250)
                      ...++.+++..+... +.....+..       .-.++++|+|++| .+|......   .+..-+. +.+|++..|.+.|.
T Consensus       171 ~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  171 NEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             ccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            555665555444433 222222221       2345777888777 455443333   3444455 66677777777777


Q ss_pred             HHHHHHHhC----CCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHHhc---CCCCcEEeeeCC
Q 025607          106 LMEEIAQNC----RNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILILDG---LQNLEVLNISHC  174 (250)
Q Consensus       106 ~l~~i~~~c----~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~~~---c~~L~~Ldls~C  174 (250)
                      .+..+.+..    +.++++++..+ +++.+...++   ..+++++.|.++++.+++.+...+++.   ...+.++-+.++
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~  328 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT  328 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence            666665444    34477777777 6655544433   356788888888888888877766544   345555556655


Q ss_pred             CCcCC
Q 025607          175 LLIDV  179 (250)
Q Consensus       175 ~~i~~  179 (250)
                      ...+.
T Consensus       329 ~~~~~  333 (478)
T KOG4308|consen  329 GKGTR  333 (478)
T ss_pred             Cccch
Confidence            55543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.06  E-value=0.031  Score=56.43  Aligned_cols=132  Identities=21%  Similarity=0.223  Sum_probs=78.0

Q ss_pred             hcCCCccEEEecCCC----CCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 025607           35 LSRGSIRTLIFHFNL----YVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEI  110 (250)
Q Consensus        35 ~~~~~l~~L~l~~~~----~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i  110 (250)
                      ..++.++.|.+-.+.    .++.+.    ..+.|.|+.|+|++|...+  .+...++.+-+|+.|+++++.++ .....+
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~f----f~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~-~LP~~l  614 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEF----FRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGIS-HLPSGL  614 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHH----HhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCcc-ccchHH
Confidence            445567777654432    122222    3457899999999875543  34555777888999999998765 111222


Q ss_pred             HHhCCCCceeEecCCCCHHHHHHHHhcCCCccEEEeecCCCC-HHHHHHHHhcCCCCcEEeeeCC
Q 025607          111 AQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLN-RDALILILDGLQNLEVLNISHC  174 (250)
Q Consensus       111 ~~~c~~L~~L~L~~~i~d~~~~~i~~~~~~L~~L~L~~~~it-d~~l~~i~~~c~~L~~Ldls~C  174 (250)
                       ...+.|.+|++...-.-..+..+...+++|++|.+.+...+ +.....-+....+|+.+.+..+
T Consensus       615 -~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  615 -GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             -HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence             23467888888754211122445556899999999444322 2223333455666666666443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.87  E-value=0.0048  Score=61.10  Aligned_cols=109  Identities=22%  Similarity=0.233  Sum_probs=67.4

Q ss_pred             hcCCCCCEEEecCCCC---CH-------HHHHHHHHhCCC--------------CceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           87 RMWRDLESLTMPSIAN---PP-------YLMEEIAQNCRN--------------FRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        87 ~~c~~L~~L~Ls~c~~---~d-------~~l~~i~~~c~~--------------L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .+.+.|++|+|..+.+   .+       ..+..+...+..              |+.|.+.+. ++|+.+..+. ++++|
T Consensus       307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hL  385 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHL  385 (1081)
T ss_pred             cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccce
Confidence            3466788999988743   22       223333333333              344444444 7888887777 89999


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhHHHHHHHHhhhhhhcccc
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCME  211 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~~i~~~~~~L~~l~~c~~  211 (250)
                      |.|+|++|+++.-. ..-+.+.+.|++|++||...-+.              ..-+..+.+|+.++.+++
T Consensus       386 KVLhLsyNrL~~fp-as~~~kle~LeeL~LSGNkL~~L--------------p~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  386 KVLHLSYNRLNSFP-ASKLRKLEELEELNLSGNKLTTL--------------PDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             eeeeecccccccCC-HHHHhchHHhHHHhcccchhhhh--------------hHHHHhhhhhHHHhhcCC
Confidence            99999877655221 11234678899999999876443              233345556666665544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=94.55  E-value=0.024  Score=56.24  Aligned_cols=74  Identities=23%  Similarity=0.199  Sum_probs=37.7

Q ss_pred             CCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEE
Q 025607           91 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL  169 (250)
Q Consensus        91 ~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~L  169 (250)
                      +|+.|++++|.++.     +....++|+.|+++++ ++.     +.....+|+.|+++.|.++.  +..-+.++++|+.|
T Consensus       383 ~L~~LdLs~N~Lt~-----LP~l~s~L~~LdLS~N~Lss-----IP~l~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~L  450 (788)
T PRK15387        383 GLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTR--LPESLIHLSSETTV  450 (788)
T ss_pred             ccceEEecCCcccC-----CCCcccCCCEEEccCCcCCC-----CCcchhhhhhhhhccCcccc--cChHHhhccCCCeE
Confidence            45666666554431     1111245666666655 321     11112355666665566552  32224457778888


Q ss_pred             eeeCCCC
Q 025607          170 NISHCLL  176 (250)
Q Consensus       170 dls~C~~  176 (250)
                      +++++..
T Consensus       451 dLs~N~L  457 (788)
T PRK15387        451 NLEGNPL  457 (788)
T ss_pred             ECCCCCC
Confidence            8877753

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=94.12  E-value=0.066  Score=29.71  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=17.8

Q ss_pred             CCccEEEeecCCCCHHHHHHHHhc
Q 025607          139 PKLKVLSLRCTTLNRDALILILDG  162 (250)
Q Consensus       139 ~~L~~L~L~~~~itd~~l~~i~~~  162 (250)
                      ++|++|+|+.|.++++|..++.+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            567778887788888887777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=94.05  E-value=0.051  Score=54.00  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=19.8

Q ss_pred             CCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCH
Q 025607          115 RNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNR  153 (250)
Q Consensus       115 ~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd  153 (250)
                      ++|+.|+++++ ++     .+....++|+.|+++.|.++.
T Consensus       282 ~~L~~L~Ls~N~Lt-----~LP~~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        282 SGLCKLWIFGNQLT-----SLPVLPPGLQELSVSDNQLAS  316 (788)
T ss_pred             hhcCEEECcCCccc-----cccccccccceeECCCCcccc
Confidence            44555555554 32     122234688888887777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.90  E-value=0.022  Score=55.54  Aligned_cols=23  Identities=13%  Similarity=0.171  Sum_probs=14.9

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHH
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKA   85 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~   85 (250)
                      +..|+.|-|.+|+.-+-.|+..+
T Consensus       108 F~sLr~LElrg~~L~~~~GL~~l  130 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTAKGLQEL  130 (1096)
T ss_pred             ccceeeEEecCcchhhhhhhHHH
Confidence            45678888887765555555443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=93.81  E-value=0.11  Score=48.91  Aligned_cols=44  Identities=11%  Similarity=0.152  Sum_probs=20.1

Q ss_pred             HHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 025607           57 TYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI  100 (250)
Q Consensus        57 ~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c  100 (250)
                      ..+....|.+.+++|+.-....-+++..+....|+|..|+|+++
T Consensus       211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            33444444555555543333333444444444555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=92.55  E-value=0.048  Score=48.09  Aligned_cols=58  Identities=21%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             cCCCCCEEEecCCCCC--HHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCC
Q 025607           88 MWRDLESLTMPSIANP--PYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN  152 (250)
Q Consensus        88 ~c~~L~~L~Ls~c~~~--d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~it  152 (250)
                      .|.-|++||||++.++  |+++.    -.|+++.|+++.. +..  +..++ .+++|..|+|++|.++
T Consensus       282 TWq~LtelDLS~N~I~~iDESvK----L~Pkir~L~lS~N~i~~--v~nLa-~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVK----LAPKLRRLILSQNRIRT--VQNLA-ELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhh----hccceeEEeccccceee--ehhhh-hcccceEeecccchhH
Confidence            3556667777766432  33332    2366666666655 221  11122 4566666666555544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=92.27  E-value=0.23  Score=27.46  Aligned_cols=23  Identities=13%  Similarity=0.050  Sum_probs=12.1

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHH
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQ  112 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~  112 (250)
                      +.|++|+|++|.+++++..++++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            34555555555555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.13  E-value=0.097  Score=48.21  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=15.6

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 025607           65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI  100 (250)
Q Consensus        65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c  100 (250)
                      +|++|.+++|..++.  +...+  .++|++|++++|
T Consensus        73 sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCccc--CCchh--hhhhhheEccCc
Confidence            466666666655422  11111  145666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=92.06  E-value=0.19  Score=49.91  Aligned_cols=99  Identities=14%  Similarity=0.123  Sum_probs=49.4

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      ++|+.|++++|. ++.  +...  -+++|+.|++++|.++. ....+   .++|++|+++++ ++. ....+.   +.|+
T Consensus       325 ~sL~~L~Ls~N~-Lt~--LP~~--l~~sL~~L~Ls~N~L~~-LP~~l---p~~L~~LdLs~N~Lt~-LP~~l~---~sL~  391 (754)
T PRK15370        325 PGLKTLEAGENA-LTS--LPAS--LPPELQVLDVSKNQITV-LPETL---PPTITTLDVSRNALTN-LPENLP---AALQ  391 (754)
T ss_pred             ccceeccccCCc-ccc--CChh--hcCcccEEECCCCCCCc-CChhh---cCCcCEEECCCCcCCC-CCHhHH---HHHH
Confidence            456666665542 221  1111  12567777777775541 11111   256777777766 331 000111   2466


Q ss_pred             EEEeecCCCCH--HHHHHHHhcCCCCcEEeeeCCC
Q 025607          143 VLSLRCTTLNR--DALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       143 ~L~L~~~~itd--~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      .|++++|+++.  .++......+|++..|++.+..
T Consensus       392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            66665566552  2344445556777777777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=90.38  E-value=0.12  Score=40.71  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEE
Q 025607           66 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVL  144 (250)
Q Consensus        66 L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L  144 (250)
                      +..++|+.|...--.....-+.+-..|...+|+++.+.+ ....+....|-++.|+++.. ++|--.. ++ .+|.|+.|
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhc
Confidence            566777777433222222223444556666777764322 12234444567777777666 5543333 44 67788888


Q ss_pred             EeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          145 SLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       145 ~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      +++.|.+... .+-++. ..+|-.||..+...
T Consensus       106 Nl~~N~l~~~-p~vi~~-L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  106 NLRFNPLNAE-PRVIAP-LIKLDMLDSPENAR  135 (177)
T ss_pred             ccccCccccc-hHHHHH-HHhHHHhcCCCCcc
Confidence            8877766643 233333 55556665555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.08  E-value=0.28  Score=44.96  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      .+.+|..|+|..+.+-.  +..++.+|.+|++|++.|.+.
T Consensus       503 nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             hhhhcceeccCCCchhh--CChhhccccceeEEEecCCcc
Confidence            68899999998777654  677889999999999999764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=89.46  E-value=0.16  Score=40.01  Aligned_cols=94  Identities=15%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             HHHHHHhcCC---CCCEEEecCCCCC--HHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHH
Q 025607           81 GICKAIRMWR---DLESLTMPSIANP--PYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRD  154 (250)
Q Consensus        81 ~l~~~~~~c~---~L~~L~Ls~c~~~--d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~  154 (250)
                      ++.....+|.   .+..++|+.|.+.  .+++..+.+. .+|+..+|++. +.+ .-..+...+|.++.|++..+.|++-
T Consensus        15 gV~evVercedakE~h~ldLssc~lm~i~davy~l~~~-~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdv   92 (177)
T KOG4579|consen   15 GVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSKG-YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDV   92 (177)
T ss_pred             hHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhCC-ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhc
Confidence            3444455553   5777899999543  4555555543 77888888766 221 1224455788999999999999986


Q ss_pred             HHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          155 ALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       155 ~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      -.+  +...|.|+.||++......
T Consensus        93 PeE--~Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   93 PEE--LAAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             hHH--HhhhHHhhhcccccCcccc
Confidence            655  6789999999999987654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=89.11  E-value=0.3  Score=44.60  Aligned_cols=83  Identities=20%  Similarity=0.139  Sum_probs=45.0

Q ss_pred             HhcCCCCCEEEecCCCCC---HHHHHHHHHhCCCCceeEecCCCCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhc
Q 025607           86 IRMWRDLESLTMPSIANP---PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDG  162 (250)
Q Consensus        86 ~~~c~~L~~L~Ls~c~~~---d~~l~~i~~~c~~L~~L~L~~~i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~  162 (250)
                      ++++|+|+.|+++++.++   +.+++-    ...+++|.|.+.--...-..+.+.+.+|+.|+|.+|+||--+-.++ +.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~----~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF-~~  344 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEG----AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF-QT  344 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcc----hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc-cc
Confidence            566777777777777544   333332    2456677765441111112233466788888887777775433321 23


Q ss_pred             CCCCcEEeeeC
Q 025607          163 LQNLEVLNISH  173 (250)
Q Consensus       163 c~~L~~Ldls~  173 (250)
                      ...|..|++-+
T Consensus       345 ~~~l~~l~l~~  355 (498)
T KOG4237|consen  345 LFSLSTLNLLS  355 (498)
T ss_pred             cceeeeeehcc
Confidence            34455555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=88.73  E-value=0.31  Score=49.31  Aligned_cols=110  Identities=24%  Similarity=0.217  Sum_probs=66.4

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607           61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  139 (250)
Q Consensus        61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~  139 (250)
                      ..||+|++|-+.+-..--...-..++...|.|+.|||++|.-.......|+. .-+|+.|++++. +. .--..+ ..+.
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l-~~Lk  618 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGL-GNLK  618 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHH-HHHH
Confidence            3577888887764321011112234667899999999987433334444554 467888998877 54 111122 2567


Q ss_pred             CccEEEeecCC-CCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          140 KLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       140 ~L~~L~L~~~~-itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      +|.+|++..+. ...  +.-+....++|++|.+.+-.
T Consensus       619 ~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhheecccccccccc--ccchhhhcccccEEEeeccc
Confidence            88888884322 111  14455568899999888765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=87.94  E-value=0.14  Score=47.18  Aligned_cols=106  Identities=21%  Similarity=0.217  Sum_probs=59.3

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      +.+|+.|++.. +.+.  .+...+..+++|+.|+++++.+++  +..+. .++.|+.|++.++ +++-.-  + ..+++|
T Consensus        94 ~~~l~~l~l~~-n~i~--~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~~--~-~~l~~L  164 (414)
T KOG0531|consen   94 LKSLEALDLYD-NKIE--KIENLLSSLVNLQVLDLSFNKITK--LEGLS-TLTLLKELNLSGNLISDISG--L-ESLKSL  164 (414)
T ss_pred             ccceeeeeccc-cchh--hcccchhhhhcchheecccccccc--ccchh-hccchhhheeccCcchhccC--C-ccchhh
Confidence            45566666653 2221  222224567778888887776542  11222 2344777777766 432111  1 126777


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +.++++.+.+++-.-.- +..+..|+.+++.+.....
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            77777777776644321 4567777777777776554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=87.90  E-value=0.87  Score=45.39  Aligned_cols=88  Identities=10%  Similarity=0.079  Sum_probs=59.1

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CC--HHHHHHHHhcCC
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FD--LLFASTLNMYLP  139 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~--d~~~~~i~~~~~  139 (250)
                      +++|+.|+|+++ .++.  +...+  .+.|+.|+|++|.++. ....+.   +.|+.|+++++ ++  ...+......+|
T Consensus       345 ~~sL~~L~Ls~N-~L~~--LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~  415 (754)
T PRK15370        345 PPELQVLDVSKN-QITV--LPETL--PPTITTLDVSRNALTN-LPENLP---AALQIMQASRNNLVRLPESLPHFRGEGP  415 (754)
T ss_pred             cCcccEEECCCC-CCCc--CChhh--cCCcCEEECCCCcCCC-CCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCC
Confidence            478999999987 4442  21111  2689999999996652 111222   35888888877 43  123444444679


Q ss_pred             CccEEEeecCCCCHHHHHHH
Q 025607          140 KLKVLSLRCTTLNRDALILI  159 (250)
Q Consensus       140 ~L~~L~L~~~~itd~~l~~i  159 (250)
                      ++..|++..|.++...+..+
T Consensus       416 ~l~~L~L~~Npls~~tl~~L  435 (754)
T PRK15370        416 QPTRIIVEYNPFSERTIQNM  435 (754)
T ss_pred             CccEEEeeCCCccHHHHHHH
Confidence            99999999999998777654

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=87.64  E-value=1.4  Score=41.75  Aligned_cols=89  Identities=17%  Similarity=0.083  Sum_probs=64.7

Q ss_pred             HHHHhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCC--CCCCHHHHHHHHhcCCCCCEEEecCCCCC-----
Q 025607           31 ISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAW--NRIKKTGICKAIRMWRDLESLTMPSIANP-----  103 (250)
Q Consensus        31 ~~~~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c--~~itd~~l~~~~~~c~~L~~L~Ls~c~~~-----  103 (250)
                      ..+..--+.+..++|+.+....-+.+..|+...|+|+.|+|++-  ..-++..+.+.  +...||+|-+.||.+.     
T Consensus       211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~  288 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSD  288 (585)
T ss_pred             HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhh
Confidence            44555566777788888888888889999999999999999975  22233333332  4467899999998542     


Q ss_pred             -HHHHHHHHHhCCCCceeE
Q 025607          104 -PYLMEEIAQNCRNFRELK  121 (250)
Q Consensus       104 -d~~l~~i~~~c~~L~~L~  121 (250)
                       .+-+.+|-...|+|..|+
T Consensus       289 ~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  289 RSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             hHHHHHHHHHhcchheeec
Confidence             345667788889988775

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=86.45  E-value=0.29  Score=44.42  Aligned_cols=39  Identities=28%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      ..+.|+.|++.++.+++-.-   .....+|+.|++++-....
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         253 NLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cccccceecccccccccccc---ccccCccCEEeccCccccc
Confidence            45566677776666665332   4455667777777655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=83.35  E-value=0.53  Score=42.71  Aligned_cols=78  Identities=19%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             CCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEE
Q 025607           91 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL  169 (250)
Q Consensus        91 ~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~L  169 (250)
                      +|+.|+++++.+..-.  .-...+|+|+.|+++.+ +++-....  ...++|+.|+++.+.+++-  .........|++|
T Consensus       141 nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~~~L~~L~ls~N~i~~l--~~~~~~~~~L~~l  214 (394)
T COG4886         141 NLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLL--SNLSNLNNLDLSGNKISDL--PPEIELLSALEEL  214 (394)
T ss_pred             hcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhh--hhhhhhhheeccCCccccC--chhhhhhhhhhhh
Confidence            5666666655433211  12234566666666555 33321111  0345666666655555542  2211223335555


Q ss_pred             eeeCC
Q 025607          170 NISHC  174 (250)
Q Consensus       170 dls~C  174 (250)
                      .+++.
T Consensus       215 ~~~~N  219 (394)
T COG4886         215 DLSNN  219 (394)
T ss_pred             hhcCC
Confidence            55554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=83.09  E-value=1  Score=21.76  Aligned_cols=11  Identities=18%  Similarity=0.389  Sum_probs=4.9

Q ss_pred             CCCEEEecCCC
Q 025607           91 DLESLTMPSIA  101 (250)
Q Consensus        91 ~L~~L~Ls~c~  101 (250)
                      +|+.|+|++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            45555555553

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=82.41  E-value=0.19  Score=41.08  Aligned_cols=54  Identities=17%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCC--CCHHHHHHHHHhCCCCceeEec
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA--NPPYLMEEIAQNCRNFRELKIM  123 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~--~~d~~l~~i~~~c~~L~~L~L~  123 (250)
                      ..||+.|+++. +.++  .+..-+++.|.|+.|+++-+.  +.+.++.    ..|.|+.|++.
T Consensus        55 l~nlevln~~n-nqie--~lp~~issl~klr~lnvgmnrl~~lprgfg----s~p~levldlt  110 (264)
T KOG0617|consen   55 LKNLEVLNLSN-NQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFG----SFPALEVLDLT  110 (264)
T ss_pred             hhhhhhhhccc-chhh--hcChhhhhchhhhheecchhhhhcCccccC----CCchhhhhhcc
Confidence            45677777763 2332  233446677888888877652  2222221    24666666664

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=81.69  E-value=3.7  Score=36.70  Aligned_cols=85  Identities=11%  Similarity=0.137  Sum_probs=53.8

Q ss_pred             HHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhC---CCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCC
Q 025607           80 TGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNC---RNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTL  151 (250)
Q Consensus        80 ~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c---~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~i  151 (250)
                      ..+..+=..=|.|++++|+.. .++...+.......   .+.+.+.+.+. .+|..+.+++   +.++.|++|++.++-|
T Consensus       188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFI  267 (353)
T KOG3735|consen  188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFI  267 (353)
T ss_pred             HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccccc
Confidence            344443334477777777776 67766666665443   34444444444 4555444444   5678888888888888


Q ss_pred             CHHHHHHHHhcCC
Q 025607          152 NRDALILILDGLQ  164 (250)
Q Consensus       152 td~~l~~i~~~c~  164 (250)
                      |..|+.++....+
T Consensus       268 tg~gi~a~~~al~  280 (353)
T KOG3735|consen  268 TGLGIMALLRALQ  280 (353)
T ss_pred             ccHHHHHHHHHHh
Confidence            8888888876654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=81.49  E-value=0.46  Score=43.71  Aligned_cols=109  Identities=24%  Similarity=0.243  Sum_probs=70.5

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcC
Q 025607           61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYL  138 (250)
Q Consensus        61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~  138 (250)
                      ..+..++.+++.. +.++.  +..-+..+.+|+.|++..+.+.  .+..+...+++|++|++++. +++ .++.    .+
T Consensus        69 ~~l~~l~~l~l~~-n~i~~--~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l  139 (414)
T KOG0531|consen   69 ESLTSLKELNLRQ-NLIAK--ILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLS----TL  139 (414)
T ss_pred             HHhHhHHhhccch-hhhhh--hhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchh----hc
Confidence            3455666665432 12222  1122456788999999887543  12221456899999999988 543 3333    45


Q ss_pred             CCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCC
Q 025607          139 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPL  181 (250)
Q Consensus       139 ~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~  181 (250)
                      +.|+.|++.+|.|++-.-   ...++.|+.++++++.......
T Consensus       140 ~~L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDISG---LESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             cchhhheeccCcchhccC---CccchhhhcccCCcchhhhhhh
Confidence            669999999999887432   2337899999999998766543

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=80.54  E-value=1.2  Score=24.26  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=17.1

Q ss_pred             CccEEEeecCCCCH-HHHHHHHhcCC
Q 025607          140 KLKVLSLRCTTLNR-DALILILDGLQ  164 (250)
Q Consensus       140 ~L~~L~L~~~~itd-~~l~~i~~~c~  164 (250)
                      .||.|.|.....++ +++..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            47888885555444 47888888876

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 12/162 (7%)

Query: 32  SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRD 91
            L + RG+    +      VS   L   A+ C +L+ + +   + I    +       ++
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKN 404

Query: 92  LESLTMPSIANPPYL--------MEEIAQNCRNFRELKIMGPFDLL---FASTLNMYLPK 140
           L    +  +     +        +  +   C+  R          L     S +  Y P 
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464

Query: 141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLA 182
           ++ + L     + + L+    G  NL+ L +  C   +  +A
Sbjct: 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 6/127 (4%)

Query: 51  VSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEI 110
           +S   L   A  C  L  + +  +  ++  G  KA     +    ++      P    E 
Sbjct: 207 ISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP----EK 262

Query: 111 AQNCRNFRELKIMGPFDL--LFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 168
             N    R+L  +G   +       L  +  +++ L L    L  +    ++    NLEV
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 169 LNISHCL 175
           L   + +
Sbjct: 323 LETRNVI 329

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 24/159 (15%), Positives = 58/159 (36%), Gaps = 14/159 (8%)

Query: 32  SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRD 91
              ++    R L      Y+  +++        Q+++L +  +  ++    C  I+   +
Sbjct: 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL-LYALLETEDHCTLIQKCPN 319

Query: 92  LESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYL------------P 139
           LE L   ++     L E +AQ C+  + L+I    D          +             
Sbjct: 320 LEVLETRNVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178
           +L+ +++  + +  ++L  I   L+NL    +      +
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 11/155 (7%)

Query: 34  SLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLE 93
            L        +   N+ +++  L   +  CP+L+ ++     ++    +    R   ++ 
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMT 400

Query: 94  SLTMPSIANPPYL----------MEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKV 143
              +  I                   I ++C++ R L + G         +  Y  K+++
Sbjct: 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEM 460

Query: 144 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178
           LS+     +   +  +L G  +L  L I  C   D
Sbjct: 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 8/150 (5%)

Query: 32  SLSLSRGSIRTL-IFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWR 90
               +  S+ +L I      VS   L     RCP LK L +     +    +   ++   
Sbjct: 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL--NRAVPLEKLATLLQRAP 235

Query: 91  DLESLTMPSIAN-----PPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLS 145
            LE L                +      C+  R L         +   +     +L  L+
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 146 LRCTTLNRDALILILDGLQNLEVLNISHCL 175
           L   T+    L+ +L     L+ L +   +
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 9/135 (6%)

Query: 51  VSDDQLTYTAERCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEE 109
           VS   L++  +    L  L +    + +  + + + +    +L+SL + + A P   +  
Sbjct: 171 VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL-NRAVPLEKLAT 229

Query: 110 IAQNCRNFRELKIMGPFDLLFASTLNMY------LPKLKVLSLRCTTLNRDALILILDGL 163
           + Q      EL   G    +     +          +L+ LS          L  +    
Sbjct: 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVC 288

Query: 164 QNLEVLNISHCLLID 178
             L  LN+S+  +  
Sbjct: 289 SRLTTLNLSYATVQS 303

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 12/171 (7%)

Query: 17  VHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNR 76
             G++ +    +         G                 L      C +L  L + ++  
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL-SYAT 300

Query: 77  IKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFAS---- 132
           ++   + K +     L+ L +        L E +A  C++ REL++      +       
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGL-EVLASTCKDLRELRVFPSEPFVMEPNVAL 359

Query: 133 ------TLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177
                 +++M  PKL+ +   C  +   ALI I     N+    +      
Sbjct: 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 7/165 (4%)

Query: 21  SDKQLTRILKISLSLSR----GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNR 76
           ++  L  I +   +++R            +  L   D       E C  L+RL +     
Sbjct: 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-- 442

Query: 77  IKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMG-PFDLLFASTLN 135
           +            + +E L++    +    M  +   C + R+L+I   PF         
Sbjct: 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502

Query: 136 MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 180
             L  ++ L +   +++  A  L+   +  L V  I      D  
Sbjct: 503 SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSR 547

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 17/149 (11%)

Query: 33  LSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDL 92
             + R   R +       VS   +     R P+++ +              K    + D 
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATV---IRRFPKVRSVE------------LKGKPHFADF 82

Query: 93  ESLTMPSIANPPYLMEEIAQNCRNFRELKIMG-PFDLLFASTLNMYLPKLKVLSL-RCTT 150
             +           +E ++ +     E+++            +       KVL L  C  
Sbjct: 83  NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142

Query: 151 LNRDALILILDGLQNLEVLNISHCLLIDV 179
            + D L  I    +NL+ L++    + DV
Sbjct: 143 FSTDGLAAIAATCRNLKELDLRESDVDDV 171

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 18/109 (16%)

Query: 87  RMWRDLESLTMPSI---ANPPYLMEEIAQNCRNFRELKI---------------MGPFDL 128
           + W ++E      +            + +     R +++                G +  
Sbjct: 35  KSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVY 94

Query: 129 LFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177
            +   ++     L+ + L+   +  D L LI    +N +VL +S C   
Sbjct: 95  PWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 8e-07
 Identities = 40/279 (14%), Positives = 71/279 (25%), Gaps = 74/279 (26%)

Query: 12  EPYVYVHGH--SDKQ-LTRILKISLSLSRGSIRTLIFHFNLY-VSDDQLTYTAERCPQLK 67
              V + G   S K  +       L +           F ++ ++             L+
Sbjct: 150 AKNVLIDGVLGSGKTWVA------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 68  RLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFD 127
           +L      +I           W           +N    +  I    R   + K      
Sbjct: 204 KL----LYQIDP--------NWTSRSD----HSSNIKLRIHSIQAELRRLLKSK-PYENC 246

Query: 128 LLFASTL-NMYLPK-LKVLSLRCTTL--NRDA---------------LILILDGLQNLEV 168
           LL    L N+   K     +L C  L   R                 L      L   EV
Sbjct: 247 LL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 169 LNI-SHCLLIDV-----------PLAPAPKKIIKKLDRTILQKAARLRKF----LTCMED 212
            ++    L               P   +   II +  R  L      +      LT + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 213 SCIMCQRTKNDEGIMRWYKYEE-GLWKDDEVLPAIVLCI 250
           S +       +    R   ++   ++     +P I+L +
Sbjct: 361 SSLNVL----EPAEYRKM-FDRLSVFPPSAHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 43/219 (19%)

Query: 7   IKIPLEPYVYVHGHSDKQ-----LTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAE 61
             IP      +     K      + ++ K SL   +    T+    ++Y+    L    E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLE---LKVKLE 440

Query: 62  RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELK 121
               L R ++  +N  K            D + L  P +    Y    I  + +N    +
Sbjct: 441 NEYALHRSIVDHYNIPKT----------FDSDDLIPPYLDQ--YFYSHIGHHLKNIEHPE 488

Query: 122 IMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPL 181
            M  F ++F   L+    + K   +R  +   +A   IL+ LQ L+              
Sbjct: 489 RMTLFRMVF---LDFRFLEQK---IRHDSTAWNASGSILNTLQQLKFY------------ 530

Query: 182 APAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRT 220
               K  I   D    +    +  FL  +E++ I  + T
Sbjct: 531 ----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 21/163 (12%), Positives = 54/163 (33%), Gaps = 13/163 (7%)

Query: 24  QLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGIC 83
           +      ++   S   ++ +    N  +    L     +C +L+ L +    R+      
Sbjct: 79  RSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSL-EGLRLSDPI-V 135

Query: 84  KAIRMWRDLESLTM---PSIANPPYLMEEIAQNCRNFRELKIMGPF---DLLFASTLNMY 137
             +    +L  L +      +     ++ +  +C    EL +   F   +      +   
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFA--LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193

Query: 138 LPKLKVLSLR--CTTLNRDALILILDGLQNLEVLNISHCLLID 178
              +  L+L      L +  L  ++    NL  L++S  +++ 
Sbjct: 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 48  NLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTM---PSIANPP 104
            L +SD  +   A +   L RL +   +   +  +   +     L+ L +          
Sbjct: 127 GLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185

Query: 105 YLMEEIAQNCRNFRELKIMGPFDLLFASTLNM---YLPKLKVLSLRCTTLNRDALILILD 161
            +   +A       +L + G    L  S L+      P L  L L  + + ++       
Sbjct: 186 -VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244

Query: 162 GLQNLEVLNISHCLLI 177
            L  L+ L++S C  I
Sbjct: 245 QLNYLQHLSLSRCYDI 260

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 26/170 (15%)

Query: 24  QLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGIC 83
            L+ +L     L+   I+            + L+   +  P LK L + +          
Sbjct: 163 DLSPVLDAMPLLNNLKIKG----------TNNLSIGKKPRPNLKSLEIISGGLPDSVVED 212

Query: 84  KAIRMWRDLESLTMPSIANPPYLMEEIAQ------NCRNFRELKIMG------PFDLLFA 131
                  +LE L +  +    Y  +          +   F  LK +G         ++  
Sbjct: 213 ILGSDLPNLEKLVL-YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271

Query: 132 STLNMYLPKLKVLSLRCTTLNRDALILILDGLQ---NLEVLNISHCLLID 178
              +  LP+L+ + +    L  +   L+LD +    +L+ +N+ +  L D
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.6
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.46
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.43
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.41
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.16
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.01
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.98
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.93
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.82
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.81
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.66
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.58
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.56
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.54
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.53
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.52
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.52
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.51
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.46
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.44
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.41
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.4
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.4
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.4
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.38
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.35
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.33
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.32
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.32
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.2
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.1
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.1
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.1
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.03
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.02
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.02
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.01
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.01
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.0
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.99
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.99
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.91
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.65
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.62
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.45
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.31
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.3
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.3
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.01
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.96
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.83
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	94.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.51
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	92.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.1
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	90.78
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	85.99

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=1e-18  Score=153.05  Aligned_cols=173  Identities=13%  Similarity=0.121  Sum_probs=125.6

Q ss_pred             CCCCCCcC----CcceeeecCCCchHHHHHHHHHHH--hcCCCccEEEecCCCCCCHHHHHHHHh---------------
Q 025607            3 ISNYIKIP----LEPYVYVHGHSDKQLTRILKISLS--LSRGSIRTLIFHFNLYVSDDQLTYTAE---------------   61 (250)
Q Consensus         3 ~~~~~~~p----l~if~~l~~~~~~~l~~v~~~~~~--~~~~~l~~L~l~~~~~i~d~~L~~i~~---------------   61 (250)
                      +.++.++|    .+||+|++..++.+++.||+.+..  .+...|+.++++.+ .+++..+..+..               
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~-~~~~~~~~~~~~~~l~~L~l~~n~l~~   84 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK-NLHPDVTGRLLSQGVIAFRCPRSFMDQ   84 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-BCCHHHHHHHHHTTCSEEECTTCEECS
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc-cCCHHHHHhhhhccceEEEcCCccccc
Confidence            45677888    789999999999999999998544  34566888888764 345555555411               


Q ss_pred             ------hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHH
Q 025607           62 ------RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFAST  133 (250)
Q Consensus        62 ------~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~  133 (250)
                            .+++|++|+|++| .+++.++..++.++++|++|++++|.+++..+..++. +++|++|++++|  +++.++..
T Consensus        85 ~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~  162 (336)
T 2ast_B           85 PLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQT  162 (336)
T ss_dssp             CCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHH
T ss_pred             cchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHH
Confidence                  2467777777766 4777777777777788888888777777777776665 777888888776  67766666


Q ss_pred             HHhcCCCccEEEeecC-CCCHHHHHHHHhcCC-CCcEEeeeCCC-CcC
Q 025607          134 LNMYLPKLKVLSLRCT-TLNRDALILILDGLQ-NLEVLNISHCL-LID  178 (250)
Q Consensus       134 i~~~~~~L~~L~L~~~-~itd~~l~~i~~~c~-~L~~Ldls~C~-~i~  178 (250)
                      +...+++|++|+++++ .+++.++..++..+| +|++|++++|. .++
T Consensus       163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~  210 (336)
T 2ast_B          163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ  210 (336)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred             HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence            6667777888777666 777777777777777 77777777775 444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=9.8e-16  Score=143.74  Aligned_cols=145  Identities=16%  Similarity=0.205  Sum_probs=113.9

Q ss_pred             HHHhcCCCccEEEecC----------CCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecC--
Q 025607           32 SLSLSRGSIRTLIFHF----------NLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS--   99 (250)
Q Consensus        32 ~~~~~~~~l~~L~l~~----------~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~--   99 (250)
                      .+...+++++.|++..          +..+++..+..++..||+|++|++ +|+.+++.++..+...|++|++|++++  
T Consensus       336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  414 (592)
T 3ogk_B          336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLD  414 (592)
T ss_dssp             HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred             HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence            3444577888888873          678888888888888888888888 477888888888777788888888862  


Q ss_pred             -C-CCCH----HHHHHHHHhCCCCceeEecCC---CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEe
Q 025607          100 -I-ANPP----YLMEEIAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLN  170 (250)
Q Consensus       100 -c-~~~d----~~l~~i~~~c~~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ld  170 (250)
                       | .+++    ..+..+...|++|++|+++.|   +++..+..++..+|+|+.|+++++.+++.++..++.+|++|++|+
T Consensus       415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred             CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence             3 5554    467777777888888888544   788888888877888888888777888888888888888888888


Q ss_pred             eeCCCCcC
Q 025607          171 ISHCLLID  178 (250)
Q Consensus       171 ls~C~~i~  178 (250)
                      +++|. ++
T Consensus       495 l~~n~-l~  501 (592)
T 3ogk_B          495 MRGCC-FS  501 (592)
T ss_dssp             EESCC-CB
T ss_pred             ccCCC-Cc
Confidence            88887 55

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=1.6e-15  Score=142.26  Aligned_cols=138  Identities=17%  Similarity=0.126  Sum_probs=79.0

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCC----------CCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPA----------WNRIKKTGICKAIRMWRDLESLTMPSIANPPY  105 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~----------c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~  105 (250)
                      .+++++.|.+.  ..+++..+..++..|++|++|+|+.          |+.+++.++..++..|++|++|+++.+.+++.
T Consensus       316 ~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~  393 (592)
T 3ogk_B          316 KCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE  393 (592)
T ss_dssp             TCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred             hCcCCCEEecc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence            45556666554  3455566666666666666666663          55666666655555666666666644456666


Q ss_pred             HHHHHHHhCCCCceeEecC---C--CC----HHHHHHHHhcCCCccEEEeecC--CCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607          106 LMEEIAQNCRNFRELKIMG---P--FD----LLFASTLNMYLPKLKVLSLRCT--TLNRDALILILDGLQNLEVLNISHC  174 (250)
Q Consensus       106 ~l~~i~~~c~~L~~L~L~~---~--i~----d~~~~~i~~~~~~L~~L~L~~~--~itd~~l~~i~~~c~~L~~Ldls~C  174 (250)
                      .+..++..||+|++|++++   +  ++    ++++.++...+++|++|+++.+  .+++.++..+...+|+|++|++++|
T Consensus       394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n  473 (592)
T 3ogk_B          394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV  473 (592)
T ss_dssp             HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred             HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence            6666666666666666641   1  33    2455555555666666666321  3566666666655666666666655


Q ss_pred             C
Q 025607          175 L  175 (250)
Q Consensus       175 ~  175 (250)
                      .
T Consensus       474 ~  474 (592)
T 3ogk_B          474 G  474 (592)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.67  E-value=1.2e-15  Score=142.93  Aligned_cols=140  Identities=16%  Similarity=0.301  Sum_probs=98.2

Q ss_pred             cCCCccEEEe--------cCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEec-----CC-C
Q 025607           36 SRGSIRTLIF--------HFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP-----SI-A  101 (250)
Q Consensus        36 ~~~~l~~L~l--------~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls-----~c-~  101 (250)
                      .+++++.|.+        ..+..+++..+..++..||+|+.|.+ +|+.+++.++..+...|++|++|+++     +| .
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  414 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY  414 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence            4566777766        33456677777777666777777744 36667777666666667777777777     34 5


Q ss_pred             CC----HHHHHHHHHhCCCCceeEecCCCCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          102 NP----PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       102 ~~----d~~l~~i~~~c~~L~~L~L~~~i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ++    +..+..+...|++|++|++++.+++.++..+++.+++|+.|+++++.+++.++..++.+||+|++|++++|..
T Consensus       415 l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             TTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             ccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            66    6666677777777777777666777777777766777777777777777777777777778888888887765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.66  E-value=1.6e-15  Score=142.11  Aligned_cols=141  Identities=16%  Similarity=0.215  Sum_probs=130.3

Q ss_pred             HhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcC-----CCCCCC----HHHHHHHHhcCCCCCEEEecCCCCCH
Q 025607           34 SLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMP-----AWNRIK----KTGICKAIRMWRDLESLTMPSIANPP  104 (250)
Q Consensus        34 ~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~-----~c~~it----d~~l~~~~~~c~~L~~L~Ls~c~~~d  104 (250)
                      ...+++++.|.+. +..+++..+..++..+|+|+.|+|+     +|..++    +.++..++.+|++|++|++++ .+++
T Consensus       368 ~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~  445 (594)
T 2p1m_B          368 SMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD  445 (594)
T ss_dssp             HHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred             HHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence            3457899999654 5679999999999999999999999     788999    899999999999999999988 8999


Q ss_pred             HHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          105 YLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       105 ~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ..+..++..+++|+.|+++++ +++.++..++..+++|++|+|++|.+++.++..++.++++|++|++++|..
T Consensus       446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            999999999999999999999 999999999889999999999889999999999999999999999999976

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.64  E-value=5.4e-15  Score=129.27  Aligned_cols=140  Identities=19%  Similarity=0.173  Sum_probs=98.7

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNC  114 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c  114 (250)
                      .+++++.|+++++ .+++.....++. +++|++|+|++|..+++.++..++.++++|++|++++| .+++..+..+...+
T Consensus       116 ~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          116 QCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             TBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             hCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            4567777777765 467766666654 77777777777767777777777777777777777777 77777666666677


Q ss_pred             C-CCceeEecCC---CCHHHHHHHHhcCCCccEEEeecCC-CCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          115 R-NFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       115 ~-~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L~~~~-itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      | +|++|+++++   +++..+..+...+|+|++|+++++. +++.++..+ ..+++|++|++++|..++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCC
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCC
Confidence            7 7777777775   5666666666677777777775555 776666644 456777777777776554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.60  E-value=1e-15  Score=123.37  Aligned_cols=88  Identities=14%  Similarity=0.084  Sum_probs=48.5

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHh---CCCCceeEecCC--CCHHHHHHHHhcC
Q 025607           65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN---CRNFRELKIMGP--FDLLFASTLNMYL  138 (250)
Q Consensus        65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~---c~~L~~L~L~~~--i~d~~~~~i~~~~  138 (250)
                      +|+.|+|++|. +||.|+..+ .+|++|++|+|++| .+||.++..|+..   |++|++|++++|  +||.++.+++ .+
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~  138 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF  138 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred             eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence            46666666664 666666543 45666666666666 4666666666542   445555555554  5555555554 34


Q ss_pred             CCccEEEe-ecCCCCHHH
Q 025607          139 PKLKVLSL-RCTTLNRDA  155 (250)
Q Consensus       139 ~~L~~L~L-~~~~itd~~  155 (250)
                      |+|++|++ .|..|||.+
T Consensus       139 ~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             TTCCEEEEESCTTCCCHH
T ss_pred             CCCCEEECCCCCCCCchH
Confidence            55555555 444455544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.60  E-value=9.9e-16  Score=123.45  Aligned_cols=88  Identities=8%  Similarity=0.141  Sum_probs=80.6

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHHHHhc---CCCccEEEe-ecCCCCHHHHHHHHhcC
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMY---LPKLKVLSL-RCTTLNRDALILILDGL  163 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~i~~~---~~~L~~L~L-~~~~itd~~l~~i~~~c  163 (250)
                      .+|++||+++|.++|.++..+. .|++|++|+|++|  +||.++..|++.   +++|++|+| +|..|||.|+..+. .|
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred             ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence            4799999999999999999984 7999999999999  999999999963   579999999 66789999999875 69


Q ss_pred             CCCcEEeeeCCCCcCC
Q 025607          164 QNLEVLNISHCLLIDV  179 (250)
Q Consensus       164 ~~L~~Ldls~C~~i~~  179 (250)
                      |+|++|+|++|.++++
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            9999999999999997

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.49  E-value=5.2e-13  Score=119.76  Aligned_cols=138  Identities=9%  Similarity=0.013  Sum_probs=107.6

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH----hcCCCCCEEEecCCCCCHHHHHHHH
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI----RMWRDLESLTMPSIANPPYLMEEIA  111 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~----~~c~~L~~L~Ls~c~~~d~~l~~i~  111 (250)
                      .+..++.|+++.+ .+++..+..++...++|+.|+|++| .+++.+...+.    ..+++|++|+|++|.+++.....++
T Consensus        99 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A           99 GRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             CSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence            4467888888876 5788888888877788888888876 78887766554    2467889999998888887776665


Q ss_pred             ---HhCCCCceeEecCC-CCHHHHHHHHh---cCCCccEEEeecCCCCHHHHHHHHh---cCCCCcEEeeeCCC
Q 025607          112 ---QNCRNFRELKIMGP-FDLLFASTLNM---YLPKLKVLSLRCTTLNRDALILILD---GLQNLEVLNISHCL  175 (250)
Q Consensus       112 ---~~c~~L~~L~L~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~itd~~l~~i~~---~c~~L~~Ldls~C~  175 (250)
                         ..+++|++|+|+++ +++.++..++.   ..++|+.|+|++|.+++.+...+..   .+++|++||+++|.
T Consensus       177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence               45788999999888 88887766653   5678999999888899888776654   56889999999885

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.48  E-value=2.5e-12  Score=104.13  Aligned_cols=123  Identities=10%  Similarity=0.069  Sum_probs=104.1

Q ss_pred             HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHHH---hCCCCceeEecCC-
Q 025607           53 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLMEEIAQ---NCRNFRELKIMGP-  125 (250)
Q Consensus        53 d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~---~~~c~~L~~L~Ls~c~~~d~~l~~i~~---~c~~L~~L~L~~~-  125 (250)
                      ++.+..+...+++|++|+|++|..++++++..+   +..++.|++|+|++|.+++++...++.   ..++|++|+|+++ 
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            456667777899999999998768999876665   456889999999999999998777764   4689999999999 


Q ss_pred             CCHHHHHHHHhc---CCCccEEEe--ecCCCCHHHHHHHH---hcCCCCcEEeeeCCC
Q 025607          126 FDLLFASTLNMY---LPKLKVLSL--RCTTLNRDALILIL---DGLQNLEVLNISHCL  175 (250)
Q Consensus       126 i~d~~~~~i~~~---~~~L~~L~L--~~~~itd~~l~~i~---~~c~~L~~Ldls~C~  175 (250)
                      ++++++.++++.   .+.|++|+|  .++.++++|...+.   ..++.|++|++++|.
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            999999888754   579999999  89999999966554   557999999999986

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.46  E-value=3.2e-12  Score=114.22  Aligned_cols=137  Identities=18%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             CCccEEEecCCCCCCHHHHHHHH---hhCCCCcEEEcCCCCCCCHHHHHHHH----hcCCCCCEEEecCCCCCHHHHHHH
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTA---ERCPQLKRLVMPAWNRIKKTGICKAI----RMWRDLESLTMPSIANPPYLMEEI  110 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~---~~c~~L~~L~L~~c~~itd~~l~~~~----~~c~~L~~L~Ls~c~~~d~~l~~i  110 (250)
                      +.++.|.++++. +++..+..++   ..+++|++|+|++| .+++.++..++    .++++|+.|+|++|.+++.+...+
T Consensus       159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence            556666665542 4444444332   25666666666655 56666544433    366667777776666665444333


Q ss_pred             H---HhCCCCceeEecCC-CCHHHHHHHHhc-----CCCccEEEeecCCCCHHHHHHHH----hcCCCCcEEeeeCCCC
Q 025607          111 A---QNCRNFRELKIMGP-FDLLFASTLNMY-----LPKLKVLSLRCTTLNRDALILIL----DGLQNLEVLNISHCLL  176 (250)
Q Consensus       111 ~---~~c~~L~~L~L~~~-i~d~~~~~i~~~-----~~~L~~L~L~~~~itd~~l~~i~----~~c~~L~~Ldls~C~~  176 (250)
                      +   ..+|+|++|+++++ +++.++..++..     +++|++|+|++|.+++.|+..+.    .++|+|++|++++|..
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            2   44566777777666 666655554432     56677777766677766544433    3357777777776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.44  E-value=8.8e-13  Score=117.87  Aligned_cols=88  Identities=22%  Similarity=0.260  Sum_probs=39.3

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHH----hCCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHH
Q 025607           88 MWRDLESLTMPSIANPPYLMEEIAQ----NCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILI  159 (250)
Q Consensus        88 ~c~~L~~L~Ls~c~~~d~~l~~i~~----~c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i  159 (250)
                      .+++|++|++++|.+++..+..+..    .+++|++|+++++ +++.++..++   ..+++|++|+|++|.+++.+...+
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            4444444444444444443333322    3444555555444 4443333332   234455555554455555444433


Q ss_pred             Hhc-----CCCCcEEeeeCCC
Q 025607          160 LDG-----LQNLEVLNISHCL  175 (250)
Q Consensus       160 ~~~-----c~~L~~Ldls~C~  175 (250)
                      ...     +++|++|++++|.
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHhhccCCCeEEEECcCCc
Confidence            321     4555555555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.43  E-value=1.3e-12  Score=117.23  Aligned_cols=140  Identities=16%  Similarity=0.126  Sum_probs=118.6

Q ss_pred             hcCCCccEEEecCCCCCCHHHHHHHHhh----CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 025607           35 LSRGSIRTLIFHFNLYVSDDQLTYTAER----CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEI  110 (250)
Q Consensus        35 ~~~~~l~~L~l~~~~~i~d~~L~~i~~~----c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i  110 (250)
                      ...+.++.++++++. +++.....++..    +++|+.|+|++| .+++.++..++..+++|++|+|++|.+++.....+
T Consensus        69 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           69 EVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             HHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred             HHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence            345679999998764 888777776654    469999999987 79999999888888999999999999999988887


Q ss_pred             HH----hCCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHH---hcCCCCcEEeeeCCCC
Q 025607          111 AQ----NCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNISHCLL  176 (250)
Q Consensus       111 ~~----~c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~---~~c~~L~~Ldls~C~~  176 (250)
                      +.    .+++|++|+|++| +++.++..++   ..+++|++|+|++|.+++.|+..+.   ..+++|+.|++++|..
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence            64    4689999999999 8888877775   4689999999999999999987765   4578999999999953

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.41  E-value=1.6e-12  Score=118.11  Aligned_cols=138  Identities=11%  Similarity=0.069  Sum_probs=98.7

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHH---HhhCCCCcEEEcCCCCCCCHHHHHHHHhcCC----CCCEEEecCCCCCHHHHH
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYT---AERCPQLKRLVMPAWNRIKKTGICKAIRMWR----DLESLTMPSIANPPYLME  108 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i---~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~----~L~~L~Ls~c~~~d~~l~  108 (250)
                      ..++++.|+++++. +++.....+   ...+++|++|+|+++ .+++.++..+...++    +|++|++++|.+++.+..
T Consensus        26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            35578888887764 676644443   345788888888865 577777777777666    688888888888765433


Q ss_pred             HH---HHhCCCCceeEecCC-CCHHHHHHHHhc----CCCccEEEeecCCCCHHHHHHH---HhcCCCCcEEeeeCCC
Q 025607          109 EI---AQNCRNFRELKIMGP-FDLLFASTLNMY----LPKLKVLSLRCTTLNRDALILI---LDGLQNLEVLNISHCL  175 (250)
Q Consensus       109 ~i---~~~c~~L~~L~L~~~-i~d~~~~~i~~~----~~~L~~L~L~~~~itd~~l~~i---~~~c~~L~~Ldls~C~  175 (250)
                      .+   ...+++|++|+++++ +++.++..++..    .++|++|+++++.+++.+...+   +..+++|++|++++|.
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            33   356788888888887 777777766653    4578888887788887664443   4568888888888876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=1.1e-11  Score=112.68  Aligned_cols=136  Identities=18%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHh----hCCCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEecCCCCCHHHHHH
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAE----RCPQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEE  109 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~----~c~~L~~L~L~~c~~itd~~---l~~~~~~c~~L~~L~Ls~c~~~d~~l~~  109 (250)
                      .+.++.|+++++ .+++..+..++.    .+++|++|+|++| .+++.+   +...+.++++|++|++++|.+++..+..
T Consensus       226 ~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          226 KASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence            455666666554 355555544443    3556666666655 555554   3333445666666666666655554444


Q ss_pred             HHHh----CCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHHhc----CCCCcEEeeeCC
Q 025607          110 IAQN----CRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILILDG----LQNLEVLNISHC  174 (250)
Q Consensus       110 i~~~----c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~~~----c~~L~~Ldls~C  174 (250)
                      ++..    .++|++|++++| +++.+...++   ..+++|++|+++++.+++.++..+.+.    +++|++|++++|
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            4432    134444444444 3332222221   234455555554445555444444332    334555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.25  E-value=2.3e-10  Score=92.47  Aligned_cols=120  Identities=12%  Similarity=0.051  Sum_probs=101.7

Q ss_pred             hcCCCccEEEecCCCCCCHHHHHHHHh---hCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHH
Q 025607           35 LSRGSIRTLIFHFNLYVSDDQLTYTAE---RCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLME  108 (250)
Q Consensus        35 ~~~~~l~~L~l~~~~~i~d~~L~~i~~---~c~~L~~L~L~~c~~itd~~l~~~---~~~c~~L~~L~Ls~c~~~d~~l~  108 (250)
                      ...+.++.|+++.+..++++....++.   .+++|++|+|+++ .+++++...+   +...+.|++|+|++|.+++.+..
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            357889999999876899998888875   4688999999987 6999876554   56778999999999999999988


Q ss_pred             HHHH---hCCCCceeEe--cCC-CCHHHHHHHHh---cCCCccEEEeecCCCCHHH
Q 025607          109 EIAQ---NCRNFRELKI--MGP-FDLLFASTLNM---YLPKLKVLSLRCTTLNRDA  155 (250)
Q Consensus       109 ~i~~---~c~~L~~L~L--~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~itd~~  155 (250)
                      +++.   .++.|++|++  +++ ++++++.++++   ..++|++|+|+.+.+++.|
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            8874   4679999999  777 99999877764   4689999999999999887

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.16  E-value=5.4e-11  Score=105.55  Aligned_cols=135  Identities=16%  Similarity=0.159  Sum_probs=69.1

Q ss_pred             CccEEEecCCCCCCHHH---HHHHHhh-CCCCcEEEcCCCCCCC---HHHHHHHHhcC-CCCCEEEecCCCCCHHHHHHH
Q 025607           39 SIRTLIFHFNLYVSDDQ---LTYTAER-CPQLKRLVMPAWNRIK---KTGICKAIRMW-RDLESLTMPSIANPPYLMEEI  110 (250)
Q Consensus        39 ~l~~L~l~~~~~i~d~~---L~~i~~~-c~~L~~L~L~~c~~it---d~~l~~~~~~c-~~L~~L~Ls~c~~~d~~l~~i  110 (250)
                      .++.|+++++ .+++..   +...... +++|++|+|++|. ++   ...+...+..+ ++|++|++++|.+++.....+
T Consensus        52 ~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  129 (362)
T 3goz_A           52 SVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF  129 (362)
T ss_dssp             TCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence            6666766655 333322   2222222 3667777776653 33   23344444555 566666666665555444444


Q ss_pred             HHh----CCCCceeEecCC-CCHHHHHHHH---hcCC-CccEEEeecCCCCHHHHHH---HHhcC-CCCcEEeeeCCC
Q 025607          111 AQN----CRNFRELKIMGP-FDLLFASTLN---MYLP-KLKVLSLRCTTLNRDALIL---ILDGL-QNLEVLNISHCL  175 (250)
Q Consensus       111 ~~~----c~~L~~L~L~~~-i~d~~~~~i~---~~~~-~L~~L~L~~~~itd~~l~~---i~~~c-~~L~~Ldls~C~  175 (250)
                      +..    +++|++|+++++ +++.++..++   ...+ +|++|+|++|.+++.+...   .+..+ ++|++||+++|.
T Consensus       130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            332    456666666666 5443333332   1233 6666666555555444332   23334 366666666664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.14  E-value=1.2e-11  Score=95.76  Aligned_cols=135  Identities=16%  Similarity=0.139  Sum_probs=86.4

Q ss_pred             HHHhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 025607           32 SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA  111 (250)
Q Consensus        32 ~~~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~  111 (250)
                      ......+.++.|.++++. +++..+......+++|+.|+++++ .++..   ..+..+++|+.|++++|.++.. +....
T Consensus        11 ~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~   84 (149)
T 2je0_A           11 LRNRTPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLA   84 (149)
T ss_dssp             HTTCCGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHH
T ss_pred             HhcCCCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccch-HHHHh
Confidence            344455678888877653 342222233356788888888876 44432   4456778888888888876653 33444


Q ss_pred             HhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHH--HHHHhcCCCCcEEeee
Q 025607          112 QNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNIS  172 (250)
Q Consensus       112 ~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l--~~i~~~c~~L~~Ldls  172 (250)
                      ..+++|++|+++++ +++-........+++|++|++++|.+++..-  ...+..+|+|++||++
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55788888888877 6653322223478888888887777765432  2456678888888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.11  E-value=1.2e-10  Score=104.02  Aligned_cols=135  Identities=16%  Similarity=0.175  Sum_probs=94.4

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHh-cCCCCCEEEecCC---CCCHHHH---HH
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIR-MWRDLESLTMPSI---ANPPYLM---EE  109 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~-~c~~L~~L~Ls~c---~~~d~~l---~~  109 (250)
                      .++|++|.+.++..+.   +..+  ..++|++|+|..| .++++++..+.. .+|+|++|+|+.+   ...+..+   ..
T Consensus       171 ~P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             CTTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             CCCCcEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            4566777665542221   1111  2567777777644 678888877764 7899999998642   1122212   11


Q ss_pred             H--HHhCCCCceeEecCC-CCHHHHHHHHh--cCCCccEEEeecCCCCHHHHHHHHhc---CCCCcEEeeeCCCCcC
Q 025607          110 I--AQNCRNFRELKIMGP-FDLLFASTLNM--YLPKLKVLSLRCTTLNRDALILILDG---LQNLEVLNISHCLLID  178 (250)
Q Consensus       110 i--~~~c~~L~~L~L~~~-i~d~~~~~i~~--~~~~L~~L~L~~~~itd~~l~~i~~~---c~~L~~Ldls~C~~i~  178 (250)
                      +  +..+|+|+.|++..| +++.+..+++.  .+|+|++|+|+++.+++.|..++..+   +++|+.|++++|. ++
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~  320 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS  320 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence            1  135899999999888 88877777774  57899999999999999998888744   7999999999885 55

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.11  E-value=6.4e-12  Score=99.34  Aligned_cols=140  Identities=14%  Similarity=0.084  Sum_probs=102.7

Q ss_pred             HHHhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 025607           32 SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA  111 (250)
Q Consensus        32 ~~~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~  111 (250)
                      ......+.++.|+++++. +++..+......+++|+.|+|+++. ++..   ..+..+++|++|++++|.++.. +..+.
T Consensus        18 ~~~~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~   91 (168)
T 2ell_A           18 LRNRTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG-LDMLA   91 (168)
T ss_dssp             HTTSCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHH
T ss_pred             hccCCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH-HHHHH
Confidence            344556889999998764 4433333334568999999999874 5543   4567899999999999977654 34555


Q ss_pred             HhCCCCceeEecCC-CCHH-HHHHHHhcCCCccEEEeecCCCCHHHH--HHHHhcCCCCcEEeeeCCCCcC
Q 025607          112 QNCRNFRELKIMGP-FDLL-FASTLNMYLPKLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       112 ~~c~~L~~L~L~~~-i~d~-~~~~i~~~~~~L~~L~L~~~~itd~~l--~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      ..+++|+.|+++++ +++- .+..+ ..+++|++|+++++.++....  ...+..+|+|++|++++|....
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             hhCCCCCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            66899999999998 6552 22333 378999999998888875432  2467789999999999997654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.08  E-value=2.3e-10  Score=101.47  Aligned_cols=137  Identities=15%  Similarity=0.098  Sum_probs=67.7

Q ss_pred             CCCccEEEecCCCCCCH---HHHHHHHhhC-CCCcEEEcCCCCCCCHHH---HHHHHhc-CCCCCEEEecCCCCCHHHHH
Q 025607           37 RGSIRTLIFHFNLYVSD---DQLTYTAERC-PQLKRLVMPAWNRIKKTG---ICKAIRM-WRDLESLTMPSIANPPYLME  108 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d---~~L~~i~~~c-~~L~~L~L~~c~~itd~~---l~~~~~~-c~~L~~L~Ls~c~~~d~~l~  108 (250)
                      .+.++.|+++++. +++   ..+......+ ++|++|+|+++. +++.+   +...+.. +++|++|++++|.+++....
T Consensus        79 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           79 PANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             CTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred             CCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence            3667777666554 332   2233322333 566777766552 43332   3333333 34666666666655543333


Q ss_pred             HHH---HhCC-CCceeEecCC-CCHHHHHHHH---hcC-CCccEEEeecCCCCHHHHHHHHh---c-CCCCcEEeeeCCC
Q 025607          109 EIA---QNCR-NFRELKIMGP-FDLLFASTLN---MYL-PKLKVLSLRCTTLNRDALILILD---G-LQNLEVLNISHCL  175 (250)
Q Consensus       109 ~i~---~~c~-~L~~L~L~~~-i~d~~~~~i~---~~~-~~L~~L~L~~~~itd~~l~~i~~---~-c~~L~~Ldls~C~  175 (250)
                      .++   ...+ +|++|+++++ +++.+...++   ..+ ++|++|+|++|.+++.+...+..   . +++|++||+++|.
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence            332   2233 6666666665 4333222222   234 36666666666666544443322   2 3466666666664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.01  E-value=1.6e-09  Score=96.67  Aligned_cols=136  Identities=13%  Similarity=0.099  Sum_probs=106.0

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHh-hCCCCcEEEcCCCCC--CCH---HHHHHHH--hcCCCCCEEEecCCCCCHHHHH
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAE-RCPQLKRLVMPAWNR--IKK---TGICKAI--RMWRDLESLTMPSIANPPYLME  108 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~-~c~~L~~L~L~~c~~--itd---~~l~~~~--~~c~~L~~L~Ls~c~~~d~~l~  108 (250)
                      .++|+.|.+..+ .++++.+..++. .+|+|++|+|+.+.+  ..+   .++..++  ..+|+|+.|++.+|.+++....
T Consensus       192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            468999998754 589999999885 689999999964311  111   1222333  3589999999999999888777


Q ss_pred             HHHH--hCCCCceeEecCC-CCHHHHHHHHh---cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          109 EIAQ--NCRNFRELKIMGP-FDLLFASTLNM---YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       109 ~i~~--~c~~L~~L~L~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      .++.  .+|+|++|+|+.+ +++.++.+++.   .+++|+.|+|+.|.++++++.++.+.+  ...++++.-.
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            7765  5789999999988 99999888874   479999999988899999999988755  3557777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.00  E-value=4.4e-11  Score=92.57  Aligned_cols=109  Identities=18%  Similarity=0.213  Sum_probs=85.0

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .++|+.|++++| .+++..+...+..+++|+.|++++|.+++-   .....+++|+.|+++++ ++.. +......+++|
T Consensus        16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred             CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence            477999999987 465444445567899999999999977654   33345799999999998 6543 33344479999


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ++|+++++.+++......+.++++|++|++++|..
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            99999999999865445577899999999999964

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.98  E-value=1.6e-08  Score=82.57  Aligned_cols=123  Identities=12%  Similarity=0.110  Sum_probs=100.1

Q ss_pred             HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHH---HhCCCCceeEecCC-
Q 025607           53 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLMEEIA---QNCRNFRELKIMGP-  125 (250)
Q Consensus        53 d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~---~~~c~~L~~L~Ls~c~~~d~~l~~i~---~~c~~L~~L~L~~~-  125 (250)
                      ++.+..+....+.|++|+|++.+.+.++|...+   ++.-..|++|+|++|.++|.+..+|+   +.-+.|++|+|+.+ 
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            567777777889999999987668999886665   45567899999999999999877776   34588999999998 


Q ss_pred             CCHHHHHHHHhcC---CCccEEEeec--C-CCCHHHHHH---HHhcCCCCcEEeeeCCC
Q 025607          126 FDLLFASTLNMYL---PKLKVLSLRC--T-TLNRDALIL---ILDGLQNLEVLNISHCL  175 (250)
Q Consensus       126 i~d~~~~~i~~~~---~~L~~L~L~~--~-~itd~~l~~---i~~~c~~L~~Ldls~C~  175 (250)
                      ++++++.+|++.+   +.|++|+|++  + .+.+++-.+   .++.-+.|+.|+++++.
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            9999999998754   4899999953  3 789987444   45667999999998653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.93  E-value=2.9e-10  Score=92.26  Aligned_cols=127  Identities=20%  Similarity=0.199  Sum_probs=93.8

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      +.++.++++++. +++  +.. ...+++|++|++++| .+++-   ..+..+++|++|++++|.+++..+..++ .+++|
T Consensus        44 ~~L~~L~l~~n~-i~~--l~~-l~~l~~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L  114 (197)
T 4ezg_A           44 NSLTYITLANIN-VTD--LTG-IEYAHNIKDLTINNI-HATNY---NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSL  114 (197)
T ss_dssp             HTCCEEEEESSC-CSC--CTT-GGGCTTCSEEEEESC-CCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTC
T ss_pred             CCccEEeccCCC-ccC--hHH-HhcCCCCCEEEccCC-CCCcc---hhhhcCCCCCEEEeECCccCcccChhhc-CCCCC
Confidence            467888887653 332  111 356899999999988 55432   2467789999999999988765555554 47999


Q ss_pred             ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCC-CCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~-itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      ++|+++++ +++.....+. .+++|++|+++.+. +++-.   .+.++++|++|++++|..-
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCC
T ss_pred             CEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCc
Confidence            99999988 7776666665 78999999997776 77642   3677899999999998643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.82  E-value=1e-09  Score=89.07  Aligned_cols=127  Identities=14%  Similarity=0.138  Sum_probs=96.0

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++++.|.++++ .+++-  ..+ ..+++|++|+++++ .+++.... .+.++++|+.|++++|.+++..+..++ .++
T Consensus        64 ~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~  136 (197)
T 4ezg_A           64 YAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGK-DVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKIN-TLP  136 (197)
T ss_dssp             GCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECT-TCBGGGSC-CCTTCTTCCEEECCSSBCBGGGHHHHT-TCS
T ss_pred             cCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECC-ccCcccCh-hhcCCCCCCEEEecCCccCcHhHHHHh-hCC
Confidence            3568999999877 33322  223 35899999999986 56553332 356899999999999999887776665 579


Q ss_pred             CCceeEecCC--CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          116 NFRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       116 ~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      +|++|+++++  +++-  ..+ ..+++|+.|+++++.+++-.   .+.++|+|++|++++..
T Consensus       137 ~L~~L~L~~n~~i~~~--~~l-~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          137 KVNSIDLSYNGAITDI--MPL-KTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             SCCEEECCSCTBCCCC--GGG-GGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC-
T ss_pred             CCCEEEccCCCCcccc--Hhh-cCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcc
Confidence            9999999988  4442  233 47999999999888988732   45789999999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.81  E-value=1.7e-10  Score=91.01  Aligned_cols=112  Identities=17%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      ..++|+.|++++| .+++..+...+..+++|+.|++++|.+++-   .....+++|++|+++++ ++.. +..+...+++
T Consensus        22 ~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~   96 (168)
T 2ell_A           22 TPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPN   96 (168)
T ss_dssp             CTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred             CcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence            3478999999987 465444444567889999999999977654   23345799999999988 5542 3344447999


Q ss_pred             ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      |++|+++++.+++-.....+..+++|++|++++|..-.
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence            99999999999874322345679999999999996543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.81  E-value=5.3e-09  Score=91.48  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=90.4

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..+.++.+.++++.......    ...+++|+.|++++|. +++...   +..+++|++|++++|.+++-  . ....++
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~--~-~~~~l~  265 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQISDI--N-AVKDLT  265 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCC--G-GGTTCT
T ss_pred             CCCccceeecccCCCCCCch----hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCccCCC--h-hHhcCC
Confidence            45678888887654322222    3578899999999874 433211   67889999999999976652  2 234678


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +|++|+++++ +++-  .. ...+++|+.|+++++.+++..... +.++++|++|++++|...
T Consensus       266 ~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             TCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCC
T ss_pred             CcCEEEccCCccCCC--hh-hcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccc
Confidence            9999999888 5542  22 347899999999888888766544 457899999999999743

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.67  E-value=3e-09  Score=84.68  Aligned_cols=132  Identities=15%  Similarity=0.141  Sum_probs=92.3

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      .+..++.|.++++. ++.  +..+....|+|+.|+|+++ .++.  + ..+.++++|+.|++++|.++.-. ..+...++
T Consensus        17 ~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N-~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~   88 (176)
T 1a9n_A           17 NAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDN-EIRK--L-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALP   88 (176)
T ss_dssp             CTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSS-CCCE--E-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCT
T ss_pred             CcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCC-CCCc--c-cccccCCCCCEEECCCCcccccC-cchhhcCC
Confidence            45678888888764 332  2345556679999999987 4553  2 34678899999999999776321 12335689


Q ss_pred             CCceeEecCC-CCHHH-HHHHHhcCCCccEEEeecCCCCHHH--HHHHHhcCCCCcEEeeeCCCC
Q 025607          116 NFRELKIMGP-FDLLF-ASTLNMYLPKLKVLSLRCTTLNRDA--LILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~-~~~i~~~~~~L~~L~L~~~~itd~~--l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      +|+.|+++++ +++-. +..+. .+++|+.|++++|.++...  -..++..+|+|+.||++++..
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            9999999988 64321 22333 7899999999888776421  123567899999999998753

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.66  E-value=1.7e-07  Score=76.56  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=84.1

Q ss_pred             HHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHh---CCCCceeEecCC-CCHHHHHHHHh---cCCCccEEEeecCC
Q 025607           79 KTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN---CRNFRELKIMGP-FDLLFASTLNM---YLPKLKVLSLRCTT  150 (250)
Q Consensus        79 d~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~---c~~L~~L~L~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~  150 (250)
                      ++.+..+..+-+.|++|+|+++ .+++++..+++..   -+.|++|+|+++ ++|.++.+|++   .-+.|++|+|..|.
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            4568888888999999999996 9999988877643   478999999999 99999888885   45799999999999


Q ss_pred             CCHHHHHHHHhcC---CCCcEEeeeCCCC
Q 025607          151 LNRDALILILDGL---QNLEVLNISHCLL  176 (250)
Q Consensus       151 itd~~l~~i~~~c---~~L~~Ldls~C~~  176 (250)
                      |+++|..+|++.+   +.|++|+|+++.+
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~  138 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQRQ  138 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence            9999999998764   6799999998753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.64  E-value=5.5e-08  Score=84.96  Aligned_cols=142  Identities=15%  Similarity=0.145  Sum_probs=101.1

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++++.++++++..-.-..    ...+++|+.|+++++ .+++...   +..+++|++|++++|.+++...   ...++
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~  243 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNKITDLSP---LANLS  243 (347)
T ss_dssp             GCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCT
T ss_pred             cCCCCCEEEccCCccccccc----ccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCC
Confidence            46789999988765332222    357899999999977 4443221   6789999999999997654332   45789


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhH
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDR  194 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~  194 (250)
                      +|++|+++++ +++-  ..+ ..+++|++|+++++.+++-   .....+++|++|++++|...+             ...
T Consensus       244 ~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~-------------~~~  304 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI--NAV-KDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGN-------------EDM  304 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCG-------------GGH
T ss_pred             CCCEEECCCCccCCC--hhH-hcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCC-------------cCh
Confidence            9999999988 5542  223 4789999999988888874   235779999999999996432             234


Q ss_pred             HHHHHHHhhhhhh
Q 025607          195 TILQKAARLRKFL  207 (250)
Q Consensus       195 ~i~~~~~~L~~l~  207 (250)
                      ..+...++|+.+.
T Consensus       305 ~~l~~l~~L~~L~  317 (347)
T 4fmz_A          305 EVIGGLTNLTTLF  317 (347)
T ss_dssp             HHHHTCTTCSEEE
T ss_pred             hHhhccccCCEEE
Confidence            4555566777754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.58  E-value=4.5e-08  Score=84.25  Aligned_cols=80  Identities=21%  Similarity=0.245  Sum_probs=36.9

Q ss_pred             HhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCC
Q 025607           86 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ  164 (250)
Q Consensus        86 ~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~  164 (250)
                      +..+++|++|++++|.+++-  .. ...+++|+.|+++++ +++-  ..+ ..+++|+.|+++++.+++..-   +.+++
T Consensus       108 l~~l~~L~~L~L~~n~i~~~--~~-l~~l~~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~L~~N~l~~~~~---l~~l~  178 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISDI--NG-LVHLPQLESLYLGNNKITDI--TVL-SRLTKLDTLSLEDNQISDIVP---LAGLT  178 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCCCCGG---GTTCT
T ss_pred             hccCCCCCEEECCCCcCCCC--hh-hcCCCCCCEEEccCCcCCcc--hhh-ccCCCCCEEEccCCccccchh---hcCCC
Confidence            34445555555555543321  11 123455555555554 3221  112 245555555555555554221   34455


Q ss_pred             CCcEEeeeCC
Q 025607          165 NLEVLNISHC  174 (250)
Q Consensus       165 ~L~~Ldls~C  174 (250)
                      +|++|++++|
T Consensus       179 ~L~~L~L~~N  188 (291)
T 1h6t_A          179 KLQNLYLSKN  188 (291)
T ss_dssp             TCCEEECCSS
T ss_pred             ccCEEECCCC
Confidence            5666666555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.56  E-value=1.9e-09  Score=94.47  Aligned_cols=81  Identities=16%  Similarity=0.159  Sum_probs=36.7

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..+.++.|+++++. ++ ..-..+. .+++|++|+|+++ .++  .+...+.++++|++|++++|.++ ..... ...++
T Consensus        79 ~~~~l~~L~L~~n~-l~-~lp~~l~-~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~  150 (328)
T 4fcg_A           79 TQPGRVALELRSVP-LP-QFPDQAF-RLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLN  150 (328)
T ss_dssp             TSTTCCEEEEESSC-CS-SCCSCGG-GGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCT
T ss_pred             cccceeEEEccCCC-ch-hcChhhh-hCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCccc-cCcHH-HhcCc
Confidence            34666677665543 21 1111122 3556666666654 233  12223445566666666665443 11111 22345


Q ss_pred             CCceeEecC
Q 025607          116 NFRELKIMG  124 (250)
Q Consensus       116 ~L~~L~L~~  124 (250)
                      +|++|++++
T Consensus       151 ~L~~L~L~~  159 (328)
T 4fcg_A          151 RLRELSIRA  159 (328)
T ss_dssp             TCCEEEEEE
T ss_pred             CCCEEECCC
Confidence            555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.54  E-value=2.3e-08  Score=86.69  Aligned_cols=135  Identities=16%  Similarity=0.129  Sum_probs=91.0

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH--hcCCCCCEEEecCCCCC--HHHHHHHHH
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI--RMWRDLESLTMPSIANP--PYLMEEIAQ  112 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~--~~c~~L~~L~Ls~c~~~--d~~l~~i~~  112 (250)
                      .++++.|+++++.. +......+ ..+++|+.|+|+++...+..++...+  .++++|++|++++|.++  +.....+..
T Consensus       148 ~~~L~~L~L~~N~l-~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  225 (312)
T 1wwl_A          148 KPGLKVLSIAQAHS-LNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA  225 (312)
T ss_dssp             CTTCCEEEEESCSC-CCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred             cCCCcEEEeeCCCC-ccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence            47899999887642 22111111 35789999999987544334443333  78899999999999887  344556667


Q ss_pred             hCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          113 NCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       113 ~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      .+++|++|+++++ +++.........+++|++|+++.|.++  .+..-+  .++|++||++++..-
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~--~~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGL--PAKLSVLDLSYNRLD  287 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSC--CSEEEEEECCSSCCC
T ss_pred             cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhc--cCCceEEECCCCCCC
Confidence            7899999999988 554221111225689999999888887  222111  178999999998643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.53  E-value=5.5e-08  Score=83.70  Aligned_cols=126  Identities=20%  Similarity=0.183  Sum_probs=91.8

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++++.|.++++.. ++  +.. ...+++|+.|+|+++ .+++-   ..+..+++|+.|++++|.+++-   .....++
T Consensus        88 ~l~~L~~L~l~~n~l-~~--~~~-l~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~  156 (291)
T 1h6t_A           88 NLKNLGWLFLDENKV-KD--LSS-LKDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNNKITDI---TVLSRLT  156 (291)
T ss_dssp             TCTTCCEEECCSSCC-CC--GGG-GTTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSSCCCCC---GGGGGCT
T ss_pred             cCCCCCEEECCCCcC-CC--Chh-hccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCCcCCcc---hhhccCC
Confidence            356777777776543 22  222 346788999999877 44432   2467899999999999977653   2334689


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +|++|+++++ +++-..   ...+++|+.|+++++.+++-  .. +..+++|+.|+++++....
T Consensus       157 ~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          157 KLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEEEEEC
T ss_pred             CCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCCcccC
Confidence            9999999988 554222   34899999999999999873  33 5779999999999986543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.52  E-value=4.1e-09  Score=91.32  Aligned_cols=137  Identities=15%  Similarity=0.082  Sum_probs=76.1

Q ss_pred             CCCccEEEecCCCCCCH---HHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH-HHHHH--
Q 025607           37 RGSIRTLIFHFNLYVSD---DQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY-LMEEI--  110 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d---~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~-~l~~i--  110 (250)
                      .++++.|+++.+..-..   -....+. .+++|++|+|+++. ++.. ....+.++++|++|++++|.++.. .+..-  
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  192 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALC  192 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCC-cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence            44566677766542211   1112222 57788888887663 3221 112345677788888887765432 22111  


Q ss_pred             HHhCCCCceeEecCC-CC--HHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcC---CCCcEEeeeCCCCc
Q 025607          111 AQNCRNFRELKIMGP-FD--LLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGL---QNLEVLNISHCLLI  177 (250)
Q Consensus       111 ~~~c~~L~~L~L~~~-i~--d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c---~~L~~Ldls~C~~i  177 (250)
                      ...+|+|++|+++++ ++  ......+...+++|++|+|++|.+++.....+ ..+   ++|++|++++|..-
T Consensus       193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCC
T ss_pred             hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCC
Confidence            135677888888777 54  33333344567788888887777765321111 222   67777777777543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.52  E-value=8.2e-08  Score=83.22  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=14.4

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  174 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C  174 (250)
                      .+++|+.|+++++.+++-.-   +..+++|++|++++|
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNN  205 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTS
T ss_pred             CCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCC
Confidence            34444444444444432111   233444444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.52  E-value=8.2e-08  Score=83.22  Aligned_cols=123  Identities=15%  Similarity=0.107  Sum_probs=74.9

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++++..-.-..    ...+++|+.|+|+++. +++-   ..+..+++|++|++++|.+++-  .. ...+++
T Consensus        62 l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~  130 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKNV---SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSN  130 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTT
T ss_pred             cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCC
Confidence            5677777777653222111    3467778888887663 4331   1356677788888877765542  12 345677


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      |++|+++++ +++-..   ...+++|++|+++.+.+++-.  . +..+++|+.|++++|..
T Consensus       131 L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          131 LQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             CCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCcc
Confidence            888887776 432111   236777888888777776522  2 45677788888777754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.52  E-value=7.5e-09  Score=89.65  Aligned_cols=137  Identities=13%  Similarity=0.114  Sum_probs=91.2

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH--HhcCCCCCEEEecCCCCC--HHHHHHHH
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA--IRMWRDLESLTMPSIANP--PYLMEEIA  111 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~--~~~c~~L~~L~Ls~c~~~--d~~l~~i~  111 (250)
                      ..++++.|+++.+.. +...- .....+++|++|+|+++...++.++...  ..++++|++|++++|.++  +.....+.
T Consensus       143 ~~~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHS-PAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCSS-CCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCc-chhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            577899999887643 21111 1113578999999998754555555432  367899999999999876  34444456


Q ss_pred             HhCCCCceeEecCC-CCHHHHHHHHh--cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          112 QNCRNFRELKIMGP-FDLLFASTLNM--YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       112 ~~c~~L~~L~L~~~-i~d~~~~~i~~--~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      ..+++|++|+++++ +++.....+..  .+++|++|++++|.++.  +..  .-.++|++||++++..-.
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSNRLNR  286 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSCCCCS
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCCcCCC
Confidence            67899999999988 54432111221  23799999998888882  221  114789999999986543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.51  E-value=4e-09  Score=95.58  Aligned_cols=136  Identities=14%  Similarity=0.060  Sum_probs=85.9

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      ++++.|+++++. +++..... ...+++|++|+|+++..... .-...+.++++|++|++++|.++......+ ..+++|
T Consensus        30 ~~l~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L  105 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELNETS-FSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANL  105 (455)
T ss_dssp             TTCCEEECCSSC-CCEECTTT-TSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTC
T ss_pred             CccCEEEecCCc-cCcCChhH-hccCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhc-cCcccC
Confidence            567788887653 33211111 23578888888887642111 001235678888888888886654333233 346888


Q ss_pred             ceeEecCC-CCHHHHHH-HHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          118 RELKIMGP-FDLLFAST-LNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~-i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      ++|+++++ +++..... ....+++|++|+++++.++......++.++++|++|+++++...
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            88888888 66543332 12367888888887777775433344667888888888888643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.49  E-value=3.5e-08  Score=91.05  Aligned_cols=134  Identities=16%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..+.++.|+++++. +++.....+ ..+++|+.|+|+++..-+-..+...+..+++|+.|++++|.++..........++
T Consensus       322 ~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          322 KISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            45667777776653 333222222 3567788888877643332345555677888888888888665422222223457


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcC-CCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYL-PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~-~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +|++|+++++ ++...    ...+ ++|+.|+++++.++  .+..-+.++++|++|++++|..-
T Consensus       400 ~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             TCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCEEECcCCCCCcch----hhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCC
Confidence            8888888777 65422    2233 58888888777777  34333347888888888888543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.49  E-value=8e-08  Score=91.22  Aligned_cols=122  Identities=19%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++|+.|+++.+..-.-..    ...+++|+.|+|+++ .+++  +. .+..+++|++|+|++|.+++-  .. ...+++
T Consensus        64 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~  132 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN-KIKD--LS-SLKDLKKLKSLSLEHNGISDI--NG-LVHLPQ  132 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCC--CT-TSTTCTTCCEEECTTSCCCCC--GG-GGGCTT
T ss_pred             CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCC-CCCC--Ch-hhccCCCCCEEEecCCCCCCC--cc-ccCCCc
Confidence            4556666665543211111    235666666666655 2322  11 245566666666666654431  11 234566


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      |+.|+|+++ +++-  ..+ ..+++|+.|+|+.|.+++..-   +..+++|+.|+|++|.
T Consensus       133 L~~L~Ls~N~l~~l--~~l-~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          133 LESLYLGNNKITDI--TVL-SRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CSEEECCSSCCCCC--GGG-GSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred             cCEEECCCCccCCc--hhh-cccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCC
Confidence            666666665 3331  122 256666666665555554221   4456666666666663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.49  E-value=9.7e-09  Score=81.66  Aligned_cols=110  Identities=15%  Similarity=0.127  Sum_probs=79.2

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      .+++|+.|+++++ .++.  +..+....++|+.|++++|.+++-  .. ...+++|+.|+++++ ++.-. ..+...+++
T Consensus        17 ~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~   89 (176)
T 1a9n_A           17 NAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNRICRIG-EGLDQALPD   89 (176)
T ss_dssp             CTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred             CcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc--cc-cccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence            4688999999987 4542  233444456999999999987753  22 245799999999988 54211 122247899


Q ss_pred             ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      |++|++++|.+++-.-...+.++++|++|+++++...+
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence            99999999998763321245689999999999997543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.47  E-value=6.5e-09  Score=91.09  Aligned_cols=133  Identities=19%  Similarity=0.264  Sum_probs=92.2

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH-----
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA-----  111 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~-----  111 (250)
                      .++++.|+++++. ++  .+..-...+++|++|+|+++ .++  .+...+.++++|++|++++|.........+.     
T Consensus       103 l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A          103 LSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARN-PLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             GTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESC-CCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             CCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCC-ccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            4578888887764 33  12222246899999999976 454  3444578899999999999854332222222     


Q ss_pred             ---HhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          112 ---QNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       112 ---~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                         ..+++|++|+++++ ++ .....+ ..+++|++|+++++.++.  +..-+.++++|++|++++|.....
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~  244 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRN  244 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCB
T ss_pred             hhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhh
Confidence               24799999999887 54 111123 378999999998888883  333466789999999999987654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.46  E-value=5.5e-09  Score=84.68  Aligned_cols=107  Identities=21%  Similarity=0.191  Sum_probs=77.3

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607           61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  139 (250)
Q Consensus        61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~  139 (250)
                      ..+++|+.|+|+++ .++.  +. .+.++++|+.|++++|.++.  +......+++|++|+++++ ++.  +..+. .++
T Consensus        45 ~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~  115 (198)
T 1ds9_A           45 STLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGIE-KLV  115 (198)
T ss_dssp             HHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHH
T ss_pred             hcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc--CCccc-cCC
Confidence            46889999999876 3433  22 45678999999999986552  2233445688999999888 654  22444 678


Q ss_pred             CccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       140 ~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      +|++|+++.+.+++-.....+..+++|++|+++++..
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            9999999888888644334567899999999998853

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.44  E-value=4.9e-08  Score=84.62  Aligned_cols=139  Identities=19%  Similarity=0.183  Sum_probs=94.3

Q ss_pred             CCCccEEEecCCCCCC-HHHHHHHHhh-CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH--HHHHHH-
Q 025607           37 RGSIRTLIFHFNLYVS-DDQLTYTAER-CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY--LMEEIA-  111 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~-d~~L~~i~~~-c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~--~l~~i~-  111 (250)
                      .++++.|+++++..-. +..+..+... .++|++|+|+++. ++... ...+.++++|++|++++|.++..  .+..+. 
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS-CEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC-TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch-HHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            4567778777654221 2233333221 3899999999773 43211 12356889999999999976654  223331 


Q ss_pred             HhCCCCceeEecCC-CC--HHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          112 QNCRNFRELKIMGP-FD--LLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       112 ~~c~~L~~L~L~~~-i~--d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      ..+++|++|+++++ ++  ......+...+++|++|+++.|.+++..-......+++|++|++++|..-
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            67899999999998 66  23444565688999999999898887441222345799999999999754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.43  E-value=1.5e-08  Score=86.18  Aligned_cols=38  Identities=24%  Similarity=0.227  Sum_probs=17.1

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      .+++|+.|+++.+.+++.. ...+.++++|++|++++|.
T Consensus       155 ~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          155 KLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             cCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCc
Confidence            3455555555444444211 1112344555555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.41  E-value=7.2e-08  Score=81.79  Aligned_cols=121  Identities=19%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      .+++.|+++++. +++  +.. ...+++|+.|+|+++ .+++-.  . +.++++|++|++++|.+++-  ..+..  ++|
T Consensus        41 ~~L~~L~l~~n~-i~~--l~~-l~~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N~l~~l--~~~~~--~~L  108 (263)
T 1xeu_A           41 SGVQNFNGDNSN-IQS--LAG-MQFFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRNRLKNL--NGIPS--ACL  108 (263)
T ss_dssp             TTCSEEECTTSC-CCC--CTT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSSCCSCC--TTCCC--SSC
T ss_pred             CcCcEEECcCCC-ccc--chH-HhhCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCCccCCc--Ccccc--Ccc
Confidence            466677776653 222  112 235778888888765 344321  1 56777888888877755431  11111  667


Q ss_pred             ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ++|+++++ +++-  ..+ ..+++|+.|+++.|.+++-.   .+..+++|++|+++++..
T Consensus       109 ~~L~L~~N~l~~~--~~l-~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          109 SRLFLDNNELRDT--DSL-IHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             CEEECCSSCCSBS--GGG-TTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCC
T ss_pred             cEEEccCCccCCC--hhh-cCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcC
Confidence            77777666 4331  122 25667777777666666531   244566777777766643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.41  E-value=2e-07  Score=85.08  Aligned_cols=80  Identities=18%  Similarity=0.087  Sum_probs=36.3

Q ss_pred             hcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC
Q 025607           87 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN  165 (250)
Q Consensus        87 ~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~  165 (250)
                      ..+++|++|++++|.+++-..   ...+++|++|+++++ +++...   ...+++|+.|++.++.+++.  . -+.++++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~  354 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--S-SLANLTN  354 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--G-GGTTCTT
T ss_pred             cCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--h-hhccCCC
Confidence            344444444444443322111   223455555555554 322111   12455555555555555542  1 2344566


Q ss_pred             CcEEeeeCCC
Q 025607          166 LEVLNISHCL  175 (250)
Q Consensus       166 L~~Ldls~C~  175 (250)
                      |+.|++++|.
T Consensus       355 L~~L~l~~n~  364 (466)
T 1o6v_A          355 INWLSAGHNQ  364 (466)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEeCCCCc
Confidence            6666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.41  E-value=1.4e-07  Score=89.59  Aligned_cols=127  Identities=20%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++|+.|.++.+..-.   +.. ...+++|+.|+|+++. +++  + ..+..+++|+.|+|++|.+++-   .....++
T Consensus        85 ~l~~L~~L~Ls~N~l~~---l~~-l~~l~~L~~L~Ls~N~-l~~--l-~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~  153 (605)
T 1m9s_A           85 NLKNLGWLFLDENKIKD---LSS-LKDLKKLKSLSLEHNG-ISD--I-NGLVHLPQLESLYLGNNKITDI---TVLSRLT  153 (605)
T ss_dssp             GCTTCCEEECCSSCCCC---CTT-STTCTTCCEEECTTSC-CCC--C-GGGGGCTTCSEEECCSSCCCCC---GGGGSCT
T ss_pred             cCCCCCEEECcCCCCCC---Chh-hccCCCCCEEEecCCC-CCC--C-ccccCCCccCEEECCCCccCCc---hhhcccC
Confidence            46789999998765332   122 2468999999999874 443  2 2367899999999999977653   2345689


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      +|+.|+|+++ +++...   ...+++|+.|+|++|.+++-  . -+..+++|+.|+|++|.....
T Consensus       154 ~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          154 KLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEECCSEEEECC
T ss_pred             CCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEccCCcCcCC
Confidence            9999999998 554222   34899999999998999873  2 356799999999999976543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.40  E-value=1.6e-07  Score=85.83  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=89.0

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .+.++.|.++++..-....    ...+++|+.|+++++. +++.  . .+..+++|+.|++++|.+++...   ...+++
T Consensus       264 l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~-l~~~--~-~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~  332 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP----LAGLTALTNLELNENQ-LEDI--S-PISNLKNLTYLTLYFNNISDISP---VSSLTK  332 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CSCC--G-GGGGCTTCSEEECCSSCCSCCGG---GGGCTT
T ss_pred             CCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCc-ccCc--h-hhcCCCCCCEEECcCCcCCCchh---hccCcc
Confidence            4556666666543222111    3457888888888763 3321  1 16789999999999997765432   357899


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      |++|+++++ +++.  ..++ .+++|+.|+++++.+++..-   +..+++|+.|++++|.-..
T Consensus       333 L~~L~l~~n~l~~~--~~l~-~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          333 LQRLFFYNNKVSDV--SSLA-NLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGT-TCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred             CCEeECCCCccCCc--hhhc-cCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence            999999998 5543  2333 78999999998889886542   6789999999999997544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.40  E-value=6.4e-08  Score=89.24  Aligned_cols=135  Identities=15%  Similarity=0.129  Sum_probs=95.0

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..+.++.|.++++..-+-..+......+++|+.|+|+++. ++...-...+..+++|++|++++|.+++.....+.   +
T Consensus       346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~  421 (520)
T 2z7x_B          346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---P  421 (520)
T ss_dssp             CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---T
T ss_pred             cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhc---c
Confidence            3567899999887644333444444578999999999874 43211111345679999999999988765433322   7


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHH-HHhcCCCCcEEeeeCCCCcC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALIL-ILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~-i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +|+.|+++++ ++ .....+. .+++|++|++++|.++.  +.. .+..+++|++|+++++...-
T Consensus       422 ~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          422 RIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             TCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECcCCCCcc
Confidence            9999999998 65 1112233 79999999998888884  322 35678999999999997543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.40  E-value=8.8e-09  Score=83.88  Aligned_cols=133  Identities=14%  Similarity=0.076  Sum_probs=82.9

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      ++++.|+++++. ++. ........+++|++|+|+++ .++.- ....+..+++|++|++++|.++.-. ......+++|
T Consensus        28 ~~l~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  102 (208)
T 2o6s_A           28 AQTTYLDLETNS-LKS-LPNGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQL  102 (208)
T ss_dssp             TTCSEEECCSSC-CCC-CCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCcEEEcCCCc-cCc-CChhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCC
Confidence            467778777653 221 11112246788999999875 44421 1123467889999999988665221 1122457899


Q ss_pred             ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      ++|+++++ ++.-.. .....+++|++|+++.+.++... ...+..+++|++|+++++...
T Consensus       103 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          103 KELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred             CEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee
Confidence            99999877 442111 11236789999999778777421 123456889999999988543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.39  E-value=3.9e-08  Score=83.53  Aligned_cols=129  Identities=20%  Similarity=0.198  Sum_probs=89.3

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      ..++.+.++.+..-+..   .+ ..+++|++|+|+++. +++  + ..+..+++|++|++++|.++.-.. .....+++|
T Consensus        41 ~~L~~L~l~~~~i~~~~---~l-~~l~~L~~L~l~~n~-l~~--~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  111 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ---GI-QYLPNVRYLALGGNK-LHD--I-SALKELTNLTYLILTGNQLQSLPN-GVFDKLTNL  111 (272)
T ss_dssp             TTCCEEECTTSCCCCCT---TG-GGCTTCCEEECTTSC-CCC--C-GGGTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             cceeeeeeCCCCccccc---cc-ccCCCCcEEECCCCC-CCC--c-hhhcCCCCCCEEECCCCccCccCh-hHhcCCcCC
Confidence            46778888765432222   22 468999999999874 443  2 246789999999999997653221 222467999


Q ss_pred             ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      ++|+++++ ++.-....+ ..+++|++|+++++.++.-. ...+.++++|++|++++|..-
T Consensus       112 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVF-DKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             CEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCccCHHHh-ccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcC
Confidence            99999988 542211112 37899999999888887422 223467899999999999643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.38  E-value=2.9e-08  Score=80.40  Aligned_cols=123  Identities=22%  Similarity=0.163  Sum_probs=88.8

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++++. +++  +.. ...+++|+.|+++++ .++  .+...+..+++|+.|++++|.++.  +..+. .+++
T Consensus        47 l~~L~~L~ls~n~-l~~--l~~-~~~l~~L~~L~l~~n-~l~--~l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~~  116 (198)
T 1ds9_A           47 LKACKHLALSTNN-IEK--ISS-LSGMENLRILSLGRN-LIK--KIENLDAVADTLEELWISYNQIAS--LSGIE-KLVN  116 (198)
T ss_dssp             TTTCSEEECSEEE-ESC--CCC-HHHHTTCCEEEEEEE-EEC--SCSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHHH
T ss_pred             CCCCCEEECCCCC-Ccc--ccc-cccCCCCCEEECCCC-Ccc--cccchhhcCCcCCEEECcCCcCCc--CCccc-cCCC
Confidence            5688899887653 322  222 246799999999987 444  233455667999999999997775  33443 5699


Q ss_pred             CceeEecCC-CCHHH-HHHHHhcCCCccEEEeecCCCCHH---------HHHHHHhcCCCCcEEe
Q 025607          117 FRELKIMGP-FDLLF-ASTLNMYLPKLKVLSLRCTTLNRD---------ALILILDGLQNLEVLN  170 (250)
Q Consensus       117 L~~L~L~~~-i~d~~-~~~i~~~~~~L~~L~L~~~~itd~---------~l~~i~~~c~~L~~Ld  170 (250)
                      |++|+++++ +++-. +..+. .+++|++|++.+|.+++.         ....++..+|+|+.||
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCEEECCCCcCCchhHHHHHh-cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            999999988 76533 34444 899999999988887654         2234577899999998

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.35  E-value=3e-08  Score=84.53  Aligned_cols=133  Identities=14%  Similarity=0.030  Sum_probs=68.5

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++++..++.-.... ...+++|++|+|+++. ++.. ....+.++++|++|++++|.++.-.... ...+++
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~  154 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNALQALPDDT-FRDLGN  154 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTT
T ss_pred             ccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCcccccCHhH-hccCCC
Confidence            4567777777664333211111 1346778888887663 3221 0123456777777777777554211111 134577


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      |++|+++++ ++.-....+. .+++|++|+++++.+++.... .+.++++|++|+++++.
T Consensus       155 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          155 LTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred             ccEEECCCCcccccCHHHhc-CccccCEEECCCCcccccCHh-HccCcccccEeeCCCCc
Confidence            777777665 3321111122 456666666665655543211 12345666666666663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.33  E-value=3.6e-09  Score=91.13  Aligned_cols=136  Identities=17%  Similarity=0.155  Sum_probs=73.2

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++++..-..... .....+++|+.|+++++. ++.. ....+.++++|++|++++|.+++..+......+++
T Consensus       100 l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTT-TTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             CCCCCEEECCCCcccccccc-hhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            45677777765432111100 112356778888887663 2211 11234566777777777775544222223345677


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      |++|+++++ +++.....+. .+++|++|+++++.+++..... +.++++|++|++++|...
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCC
T ss_pred             CCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCc
Confidence            777777766 4332122222 5677777777666665432111 345677777777777543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.33  E-value=1.3e-09  Score=93.89  Aligned_cols=91  Identities=22%  Similarity=0.246  Sum_probs=48.4

Q ss_pred             HhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCC
Q 025607           86 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ  164 (250)
Q Consensus        86 ~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~  164 (250)
                      +.++++|++|++++|.++...... ...+++|++|+++++ +++.........+++|++|+++++.+++... ..+.+++
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~  199 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLS  199 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCT
T ss_pred             hhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCC
Confidence            345556666666665433211111 123566666666665 4331111222356777777777676665321 2234577


Q ss_pred             CCcEEeeeCCCCcC
Q 025607          165 NLEVLNISHCLLID  178 (250)
Q Consensus       165 ~L~~Ldls~C~~i~  178 (250)
                      +|++|+++++...+
T Consensus       200 ~L~~L~L~~N~l~~  213 (306)
T 2z66_A          200 SLQVLNMSHNNFFS  213 (306)
T ss_dssp             TCCEEECTTSCCSB
T ss_pred             CCCEEECCCCccCc
Confidence            78888887776433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.32  E-value=1e-07  Score=80.87  Aligned_cols=125  Identities=18%  Similarity=0.203  Sum_probs=91.7

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++++.|+++++. +++-.  . ...+++|+.|+|+++ .+++  +.. +.. ++|++|++++|.+++-  .. ...++
T Consensus        61 ~l~~L~~L~L~~N~-i~~~~--~-l~~l~~L~~L~L~~N-~l~~--l~~-~~~-~~L~~L~L~~N~l~~~--~~-l~~l~  128 (263)
T 1xeu_A           61 FFTNLKELHLSHNQ-ISDLS--P-LKDLTKLEELSVNRN-RLKN--LNG-IPS-ACLSRLFLDNNELRDT--DS-LIHLK  128 (263)
T ss_dssp             GCTTCCEEECCSSC-CCCCG--G-GTTCSSCCEEECCSS-CCSC--CTT-CCC-SSCCEEECCSSCCSBS--GG-GTTCT
T ss_pred             hCCCCCEEECCCCc-cCCCh--h-hccCCCCCEEECCCC-ccCC--cCc-ccc-CcccEEEccCCccCCC--hh-hcCcc
Confidence            35789999998764 33211  1 457899999999987 4433  112 222 8999999999977652  22 34689


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +|+.|+++++ +++-  ..+ ..+++|+.|+++++.+++.   ..+..+++|+.|+++++....
T Consensus       129 ~L~~L~Ls~N~i~~~--~~l-~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          129 NLEILSIRNNKLKSI--VML-GFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TCCEEECTTSCCCBC--GGG-GGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred             cccEEECCCCcCCCC--hHH-ccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccC
Confidence            9999999988 6543  233 3799999999999999875   445679999999999987544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.32  E-value=2.2e-08  Score=84.02  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      .+++|+.|+|+++ .++.. ....+.++++|++|++++|.++.-. ......+++|++|+++++ ++.-....+ ..+++
T Consensus        81 ~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~  156 (251)
T 3m19_A           81 DLTELGTLGLANN-QLASL-PLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAF-DKLTN  156 (251)
T ss_dssp             TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred             cCCcCCEEECCCC-ccccc-ChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCCcCCccCHHHc-CcCcC
Confidence            3455555655544 22210 0012345556666666655443111 011123456666666555 321111111 24566


Q ss_pred             ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      |++|+|+.|.++...- ..+..+++|++|+++++.-
T Consensus       157 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCB
T ss_pred             CCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCce
Confidence            6666665555552211 1234456666666666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.32  E-value=1.9e-08  Score=85.85  Aligned_cols=134  Identities=13%  Similarity=0.093  Sum_probs=74.7

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++.+. ++.-.... ...+++|++|+|+++..++... ...+..+++|++|++++|.++...... ...+++
T Consensus        55 ~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~  130 (285)
T 1ozn_A           55 CRNLTILWLHSNV-LARIDAAA-FTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAA  130 (285)
T ss_dssp             CTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTT
T ss_pred             CCCCCEEECCCCc-cceeCHhh-cCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhH-hhCCcC
Confidence            4567777776542 22111111 1346778888887764343211 123456778888888877554321111 234677


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      |++|+++++ ++.-....+ ..+++|++|+++++.++.-.. ..+.++++|++|+++++..
T Consensus       131 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          131 LQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             CCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcccccCHhHh-ccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcc
Confidence            888888776 432111112 257788888887777663221 1234577788888887754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.27  E-value=5.2e-08  Score=91.14  Aligned_cols=131  Identities=18%  Similarity=0.168  Sum_probs=88.1

Q ss_pred             CCccEEEecCCCC--CCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           38 GSIRTLIFHFNLY--VSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        38 ~~l~~L~l~~~~~--i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++.|+++++.-  +....+    .++++|++|+|++| .++.-. ..++.++++|++|+|++|.++.-.. .....++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f----~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~  124 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLS  124 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECG-GGGTTCT
T ss_pred             cCCCEEEeeCCCCCCCCHHHH----hCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCC
Confidence            4677888877531  222222    46899999999987 343210 1235788999999999997653211 1224689


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      +|++|+++++ ++.-.-..+ ..+++|++|+++.+.++...+.....++++|++|+++++..
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            9999999887 442111112 37899999999888887544445567789999999999854

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.26  E-value=2.6e-08  Score=84.55  Aligned_cols=132  Identities=18%  Similarity=0.157  Sum_probs=67.1

Q ss_pred             CccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCc
Q 025607           39 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  118 (250)
Q Consensus        39 ~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~  118 (250)
                      .++.|+++++. +++-.... ...+++|++|+|+++ .++... ...+.++++|++|++++|.++......+ ..+++|+
T Consensus        29 ~l~~L~ls~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~  103 (276)
T 2z62_A           29 STKNLDLSFNP-LRHLGSYS-FFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQ  103 (276)
T ss_dssp             TCCEEECTTCC-CCEECTTT-TTTCTTCSEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCC
T ss_pred             CccEEECCCCc-ccccCHhH-hccccCCcEEECCCC-cCCccC-HHHccCCcCCCEEECCCCccCccChhhh-cCCcccc
Confidence            45666665542 22111001 124667777777765 333210 1124556777777777775543222222 2456777


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          119 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       119 ~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      +|+++++ ++.-....+ ..+++|++|+++.+.++...+...+.++++|++|++++|..
T Consensus       104 ~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          104 KLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             EEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            7777665 322111112 25667777777666665433333345567777777776643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.25  E-value=2.9e-09  Score=99.06  Aligned_cols=87  Identities=22%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             hcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC
Q 025607           87 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN  165 (250)
Q Consensus        87 ~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~  165 (250)
                      .++++|++|++++|.++.... .....+++|++|+++++ +++..+......+++|+.|+++++.+++.... .+.++++
T Consensus       418 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  495 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSS  495 (570)
T ss_dssp             TTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTT
T ss_pred             hcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccC
Confidence            344455555555543322111 11123455666666555 33211111123556666666666666543211 2345667


Q ss_pred             CcEEeeeCCC
Q 025607          166 LEVLNISHCL  175 (250)
Q Consensus       166 L~~Ldls~C~  175 (250)
                      |++|++++|.
T Consensus       496 L~~L~l~~n~  505 (570)
T 2z63_A          496 LQVLNMASNQ  505 (570)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEeCCCCc
Confidence            7777777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.25  E-value=1.8e-06  Score=79.91  Aligned_cols=65  Identities=18%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             CCCccEEEecCCCCCCHHHHHHH--HhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYT--AERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIAN  102 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i--~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~  102 (250)
                      .+.++.|+++++. +++......  ...+++|+.|+|+++.--+-......+..+++|++|++++|.+
T Consensus       333 l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          333 LKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             CTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             CccccEEEccCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence            3445555554432 333332211  1234555555555442211111122344555555555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.24  E-value=1.8e-07  Score=84.66  Aligned_cols=63  Identities=14%  Similarity=0.117  Sum_probs=28.3

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHH-HHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGIC-KAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  125 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~-~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~  125 (250)
                      .+++|++|+|++| .++..... ..+.++++|++|++++|.++......+...+++|++|+++++
T Consensus       101 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A          101 GLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             TCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             CcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            3556666666655 33322111 123455555555555554433222222234455555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.23  E-value=1.1e-08  Score=95.12  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=81.5

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607           61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  139 (250)
Q Consensus        61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~  139 (250)
                      ..+++|+.|++++|. ++.. ....+.++++|++|++++|.+++..+......+++|++|+++++ +++.....+. .++
T Consensus       418 ~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~  494 (570)
T 2z63_A          418 LSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLS  494 (570)
T ss_dssp             TTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCT
T ss_pred             hcCCCCCEEeCcCCc-cccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh-ccc
Confidence            467888888888773 2211 12345789999999999997664333334456899999999998 5543223333 789


Q ss_pred             CccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       140 ~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +|++|+++++.+++.. ...+.++++|+.|+++++....
T Consensus       495 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          495 SLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccC
Confidence            9999999888887642 2234679999999999987543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.22  E-value=6.3e-08  Score=84.10  Aligned_cols=106  Identities=14%  Similarity=0.053  Sum_probs=50.5

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      +++|+.|+|+++ .++......+...+++|++|++++|.++.-  ... ..+++|++|+++++ ++.-.. . ...+++|
T Consensus       143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L  216 (317)
T 3o53_A          143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKLKTLDLSSNKLAFMGP-E-FQSAAGV  216 (317)
T ss_dssp             GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTCCEEECCSSCCCEECG-G-GGGGTTC
T ss_pred             cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc--ccc-cccccCCEEECCCCcCCcchh-h-hcccCcc
Confidence            455555555543 333322222333455666666665544322  000 12456666666555 321100 1 1245666


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ++|++++|.++.  +...+..+++|+.|+++++..
T Consensus       217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCC
T ss_pred             cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCc
Confidence            666665566552  222234556666666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.22  E-value=7.2e-09  Score=90.10  Aligned_cols=133  Identities=13%  Similarity=0.081  Sum_probs=83.5

Q ss_pred             CCccEEEecCCCCCCH--HHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           38 GSIRTLIFHFNLYVSD--DQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d--~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ++++.|+++++. ++.  ..-..+ ..+++|++|+|++++.++.. +...+.++++|++|++++|.++......+ ..++
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSSL-ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIK  125 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGG-GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCT
T ss_pred             ceEEEEECCCCC-ccCCcccChhH-hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCC
Confidence            578888887654 222  111222 36889999999864454422 12235788999999999887653333333 3478


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCC-CCcEEeeeCCCC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ-NLEVLNISHCLL  176 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~-~L~~Ldls~C~~  176 (250)
                      +|++|+++++ ++......+. .+++|++|++..+.++...... +..++ +|++|+++++..
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred             CCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee
Confidence            9999999887 4422222233 6888999988777776332222 33455 788888888754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.22  E-value=1.9e-07  Score=88.02  Aligned_cols=106  Identities=18%  Similarity=0.193  Sum_probs=75.4

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      ..|+.|+|+++ .++.  +.. +.++++|+.|+|++|.++ ..... ...+++|+.|+++++ ++.  +..+. .+++|+
T Consensus       441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~--lp~l~-~l~~L~  511 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN--VDGVA-NLPRLQ  511 (567)
T ss_dssp             TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC--CGGGT-TCSSCC
T ss_pred             cCceEEEecCC-CCCC--CcC-ccccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC--CcccC-CCCCCc
Confidence            46899999876 4443  333 678899999999999766 22222 346799999999888 553  22333 789999


Q ss_pred             EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      .|+|++|.++.......+.++++|+.|+++++..-.
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            999988888764313335678999999999987543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.20  E-value=1.1e-07  Score=88.81  Aligned_cols=133  Identities=20%  Similarity=0.193  Sum_probs=75.5

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKK-TGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNC  114 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd-~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c  114 (250)
                      ..+.++.++++++. +++.....+ ..+++|+.|+|+++ .++. ..+...+.++++|+.|++++|.++..........+
T Consensus       351 ~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          351 SPSSFTFLNFTQNV-FTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             SCCCCCEEECCSSC-CCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             CCCCceEEECCCCc-cccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence            34566777776543 333211111 35677788888765 3432 23334456777788888877755432211122345


Q ss_pred             CCCceeEecCC-CCHHHHHHHHhcC-CCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          115 RNFRELKIMGP-FDLLFASTLNMYL-PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       115 ~~L~~L~L~~~-i~d~~~~~i~~~~-~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      ++|++|+++++ +++.    +...+ ++|+.|+++.+.++  .+..-+.++++|++|+++++..-
T Consensus       428 ~~L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          428 ESILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             TTCCEEECCSSCCCGG----GGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCC
T ss_pred             ccCCEEECCCCCCCcc----hhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCC
Confidence            77777777776 5532    22233 57777777777776  23222336777888888777544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.19  E-value=6.8e-09  Score=97.52  Aligned_cols=88  Identities=22%  Similarity=0.175  Sum_probs=45.6

Q ss_pred             hcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC
Q 025607           87 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN  165 (250)
Q Consensus        87 ~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~  165 (250)
                      .++++|++|++++|.++...... ...+++|++|+++++ +++.........+++|++|+++++.++.... ..+.++++
T Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~  498 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHR  498 (606)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred             hccccCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhccccc
Confidence            34555555555555433211111 123566666666655 4332111122356777777776666664221 22356777


Q ss_pred             CcEEeeeCCCC
Q 025607          166 LEVLNISHCLL  176 (250)
Q Consensus       166 L~~Ldls~C~~  176 (250)
                      |++|++++|..
T Consensus       499 L~~L~Ls~N~l  509 (606)
T 3vq2_A          499 LQLLNMSHNNL  509 (606)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEECCCCcC
Confidence            77777777754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.19  E-value=1e-07  Score=83.77  Aligned_cols=63  Identities=16%  Similarity=0.110  Sum_probs=37.2

Q ss_pred             CCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          114 CRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       114 c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +++|++|+++++ ++......+. .+++|++|+++.+.++... ..+...+++|++|+++++..-+
T Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLL-EIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHH-HHHHHHTTTEEEEEEESCBCTT
T ss_pred             CCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCccccch-hhhhhhcccccEEECCCCcccc
Confidence            455555555544 3221111222 5677888888777776433 3345568899999999886543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.18  E-value=2.3e-08  Score=93.82  Aligned_cols=135  Identities=15%  Similarity=0.079  Sum_probs=80.7

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .+.++.|.++++........ .....+++|+.|++++|. ++.. ....+.++++|++|++++|.+++..+......+++
T Consensus       398 l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          398 LEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDISYTN-TKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             CTTCCEEECTTSEEESTTTT-TTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             CCCCCeeECCCCccCCccCh-hhhhccccCCEEECcCCC-CCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            46777787776542221110 112357888888888764 2211 11235677888888888886655333333345788


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      |++|+++++ ++......+ ..+++|++|+++.|.+++.. ...+.++++|+.|++++|..
T Consensus       475 L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVF-DTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             CCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCC
T ss_pred             CCEEECCCCcCCccChhhh-cccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcC
Confidence            888888777 443222222 26778888888777777532 12235677888888888764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.18  E-value=1.3e-07  Score=82.33  Aligned_cols=130  Identities=16%  Similarity=0.134  Sum_probs=67.8

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHH-HHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTG-ICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~-l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      +.++.|.++++. ++.-. ......+++|+.|+++++. ++..+ ....+.++++|++|++++|.++.-.    ....++
T Consensus       121 ~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~----~~~~~~  193 (330)
T 1xku_A          121 KTLQELRVHENE-ITKVR-KSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPS  193 (330)
T ss_dssp             TTCCEEECCSSC-CCBBC-HHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCTT
T ss_pred             ccccEEECCCCc-ccccC-HhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCC----cccccc
Confidence            577888777653 22111 1122457888888888653 33211 1223566777777777777543200    011256


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      |++|+++++ ++......+. .+++|++|+++++.+++.... .+.++++|++|++++|..
T Consensus       194 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             CSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcC
Confidence            666666665 3322112222 456666666655555542211 124456666666666643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.17  E-value=6.5e-08  Score=82.01  Aligned_cols=108  Identities=16%  Similarity=0.095  Sum_probs=44.0

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      .+++|++|+|+++. ++.-. ...+.++++|++|++++|.++.-.... ...+++|++|+++++ ++.-....+ ..+++
T Consensus        83 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~  158 (270)
T 2o6q_A           83 ELKNLETLWVTDNK-LQALP-IGVFDQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNELQSLPKGVF-DKLTS  158 (270)
T ss_dssp             SCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred             CCCCCCEEECCCCc-CCcCC-HhHcccccCCCEEECCCCccCeeCHHH-hCcCcCCCEEECCCCcCCccCHhHc-cCCcc
Confidence            34556666655442 22100 012344555555555555332211111 123455555555554 221111111 23455


Q ss_pred             ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607          141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  174 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C  174 (250)
                      |++|+++.+.++.-.. ..+.++++|++|+++++
T Consensus       159 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          159 LKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred             cceeEecCCcCcEeCh-hHhccCCCcCEEECCCC
Confidence            5555554444443111 11233455555555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.16  E-value=1.7e-07  Score=83.41  Aligned_cols=104  Identities=17%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      ++|+.|+++++ .+++.   ..+..+++|++|++++|.+++.....+ ..+++|++|+++++ ++.-  ......+|+|+
T Consensus       226 ~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~  298 (390)
T 3o6n_A          226 VELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVAL--NLYGQPIPTLK  298 (390)
T ss_dssp             SSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSCCCEE--ECSSSCCTTCC
T ss_pred             ccccEEECCCC-CCccc---HHHcCCCCccEEECCCCcCCCcChhHc-cccccCCEEECCCCcCccc--CcccCCCCCCC
Confidence            45666666654 23321   234555666666666655443222122 23455666666555 3210  00112455566


Q ss_pred             EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      +|+++++.++.  +..-...+++|++|++++|..
T Consensus       299 ~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          299 VLDLSHNHLLH--VERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             EEECCSSCCCC--CGGGHHHHTTCSEEECCSSCC
T ss_pred             EEECCCCccee--cCccccccCcCCEEECCCCcc
Confidence            66665555542  111123345555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.16  E-value=1.9e-08  Score=94.44  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      .+++|+.|+++++.++..... .+.++++|++|++++|.
T Consensus       474 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          474 TLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             GCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred             cCCCccEEECCCCccCccChh-hhccccCCCEEECCCCc
Confidence            455666666655555432111 12445666666666664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.15  E-value=9.6e-08  Score=79.24  Aligned_cols=131  Identities=14%  Similarity=0.077  Sum_probs=70.4

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      ++++.|+++++. ++.-. ......+++|+.|+|+++. ++.-. ...+.++++|+.|+|++|.++.-. ......+++|
T Consensus        40 ~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDNQ-ITKLE-PGVFDSLINLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCCEEEcCCCc-cCccC-HHHhhCccCCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCCCcCCccC-hhHhCcchhh
Confidence            456667666543 22100 0112346777777777653 32110 012456777777777777554211 1112346777


Q ss_pred             ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ++|+++++ ++. .-..+ ..+++|+.|+|+.|.++.-.- ..+..+++|+.|+++++..
T Consensus       115 ~~L~Ls~N~l~~-lp~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          115 KELFMCCNKLTE-LPRGI-ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CEEECCSSCCCS-CCTTG-GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCB
T ss_pred             CeEeccCCcccc-cCccc-ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCc
Confidence            77777766 431 00112 367777777777676663211 2345577777777777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.15  E-value=1.1e-07  Score=80.57  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=88.7

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++++. ++.- .......+++|+.|+|+++. ++... ...+..+++|++|++++|.++.-.. .....+++
T Consensus        84 l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~  158 (270)
T 2o6q_A           84 LKNLETLWVTDNK-LQAL-PIGVFDQLVNLAELRLDRNQ-LKSLP-PRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTS  158 (270)
T ss_dssp             CTTCCEEECCSSC-CCCC-CTTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred             CCCCCEEECCCCc-CCcC-CHhHcccccCCCEEECCCCc-cCeeC-HHHhCcCcCCCEEECCCCcCCccCH-hHccCCcc
Confidence            4678888887654 2210 01122468999999999763 33211 1235688999999999996653221 11245799


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      |++|+++++ ++.-....+ ..+++|++|+++.+.++.-. ...+..+++|+.|++++++-.
T Consensus       159 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          159 LKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             cceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCCee
Confidence            999999987 443221122 36899999999888887422 123467899999999998743

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.14  E-value=4.2e-08  Score=85.18  Aligned_cols=133  Identities=14%  Similarity=0.109  Sum_probs=96.0

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .+.++.|+++++. +++.....+...+++|+.|+|+++. ++..   .....+++|++|++++|.++.-.. . ...+++
T Consensus       143 l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~  215 (317)
T 3o53_A          143 RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV---KGQVVFAKLKTLDLSSNKLAFMGP-E-FQSAAG  215 (317)
T ss_dssp             GSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE---ECCCCCTTCCEEECCSSCCCEECG-G-GGGGTT
T ss_pred             cCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc---ccccccccCCEEECCCCcCCcchh-h-hcccCc
Confidence            4678888888753 4443344445568999999999874 4432   112248999999999997763211 1 346799


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      |++|+++++ ++.  +......+++|+.|++++|.++...+...+..+++|+.|+++++..++
T Consensus       216 L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          216 VTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            999999988 542  111124789999999999999977788888899999999988776554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.13  E-value=1.5e-07  Score=87.93  Aligned_cols=134  Identities=12%  Similarity=0.106  Sum_probs=92.0

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..+.++.|+++.+..-.-..+......+++|+.|+|+++. ++...-...+..+++|++|++++|.+++.....+.   +
T Consensus       375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~  450 (562)
T 3a79_B          375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---P  450 (562)
T ss_dssp             SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---T
T ss_pred             ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---C
Confidence            3567889999876433222233333578999999999874 33211111345779999999999988764433221   7


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHH-HHhcCCCCcEEeeeCCCCc
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALIL-ILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~-i~~~c~~L~~Ldls~C~~i  177 (250)
                      +|+.|+++++ ++. .-..+. .+++|++|++++|.++.  +.. .+..+++|+.|++++++-.
T Consensus       451 ~L~~L~L~~N~l~~-ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          451 KVKVLDLHNNRIMS-IPKDVT-HLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             TCSEEECCSSCCCC-CCTTTT-SSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECCSCCBC
T ss_pred             cCCEEECCCCcCcc-cChhhc-CCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEecCCCcC
Confidence            9999999988 551 111223 78999999998898883  332 2567899999999998754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.12  E-value=2.2e-07  Score=90.21  Aligned_cols=62  Identities=13%  Similarity=0.015  Sum_probs=25.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHH--HHHHhcCCCCCEEEecCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGI--CKAIRMWRDLESLTMPSI  100 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l--~~~~~~c~~L~~L~Ls~c  100 (250)
                      .++++.|+++++... ......+...+++|++|+|+++. ++....  ...+.++++|++|++++|
T Consensus       125 l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          125 CSGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             CTTCCEEECCSSEEE-CCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             CCCCCEEECcCCccC-CcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCC
Confidence            456666666554221 10000111244556666665542 221111  112344555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.12  E-value=1.7e-07  Score=85.61  Aligned_cols=84  Identities=17%  Similarity=0.080  Sum_probs=35.4

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++.+. +++-.-.. ...+++|++|+|+++ .++.-. ...+.++++|++|+|++|.++......+ ..+++
T Consensus        55 l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~  129 (477)
T 2id5_A           55 FPHLEELELNENI-VSAVEPGA-FNNLFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMF-QDLYN  129 (477)
T ss_dssp             CTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTT
T ss_pred             CCCCCEEECCCCc-cCEeChhh-hhCCccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCccccCChhHc-ccccc
Confidence            3456666665442 22110001 124566666666654 222110 0123445566666666554432111111 23455


Q ss_pred             CceeEecCC
Q 025607          117 FRELKIMGP  125 (250)
Q Consensus       117 L~~L~L~~~  125 (250)
                      |++|+++++
T Consensus       130 L~~L~l~~n  138 (477)
T 2id5_A          130 LKSLEVGDN  138 (477)
T ss_dssp             CCEEEECCT
T ss_pred             CCEEECCCC
Confidence            555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.12  E-value=3.3e-07  Score=90.39  Aligned_cols=131  Identities=11%  Similarity=0.001  Sum_probs=68.8

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH-------hcCCCCCEEEecCCCCCHHHHH-
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI-------RMWRDLESLTMPSIANPPYLME-  108 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~-------~~c~~L~~L~Ls~c~~~d~~l~-  108 (250)
                      .++++.|+++.+..... .- .....+++|+.|+|+++..++...+...+       ..+++|+.|++++|.++ .... 
T Consensus       490 L~~L~~L~Ls~N~l~~~-iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~  566 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQ-LP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS  566 (876)
T ss_dssp             CTTCCEEEEESCTTCCS-CC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred             CCCCCEEECcCCCCCcc-Ch-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence            45677777766542221 11 11235677777777766446552222222       23457777777777655 2211 


Q ss_pred             HHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC-CcEEeeeCCC
Q 025607          109 EIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN-LEVLNISHCL  175 (250)
Q Consensus       109 ~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~-L~~Ldls~C~  175 (250)
                      .....+++|+.|+++++ ++  .+..+ ..+++|+.|+|+.+.++  .+..-+.++++ |+.|++++|.
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~--~lp~~-~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVR--HLEAF-GTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCC--BCCCC-CTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred             hhhhcCCCCCEEECCCCCcc--cchhh-cCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC
Confidence            02234677777777766 44  11122 24566666666666655  23322344555 6666666664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.11  E-value=1.4e-07  Score=76.70  Aligned_cols=110  Identities=16%  Similarity=0.081  Sum_probs=76.5

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .++|++|+++++ .++.. ....+.++++|++|+++++.++.-. ......+++|++|+++++ ++.-.. .....+++|
T Consensus        27 ~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L  102 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSL-PNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQL  102 (208)
T ss_dssp             CTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCCCcEEEcCCC-ccCcC-ChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCC
Confidence            468999999987 44421 1123578899999999999765321 122346799999999988 542111 112378999


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      ++|+++.+.++... ...+.++++|++|+++++..-
T Consensus       103 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          103 KELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred             CEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccc
Confidence            99999888887422 123467899999999998543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.11  E-value=7.5e-08  Score=93.50  Aligned_cols=135  Identities=16%  Similarity=0.221  Sum_probs=66.9

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH-----------
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPP-----------  104 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d-----------  104 (250)
                      ..++++.|+++++.....  +.. ...+++|++|+|+++. ++.. +...+.++++|++|++++|.++.           
T Consensus       198 ~l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~  272 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNK-LSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ  272 (768)
T ss_dssp             TCTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSC-CCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred             cCCcCCEEECcCCcCCCC--Ccc-cccCCCCCEEECcCCc-CCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence            356677777766543220  011 2356677777777653 3321 22344566666666666664321           


Q ss_pred             -----------HHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeee
Q 025607          105 -----------YLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNIS  172 (250)
Q Consensus       105 -----------~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls  172 (250)
                                 .....+...|++|++|+++++ ++......+ ..+++|++|++..+.++..--...+.++++|++|+++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence                       112222233455666666555 221111112 2566777777755554421112224456777777777


Q ss_pred             CCCC
Q 025607          173 HCLL  176 (250)
Q Consensus       173 ~C~~  176 (250)
                      +|..
T Consensus       352 ~n~l  355 (768)
T 3rgz_A          352 FNEF  355 (768)
T ss_dssp             SSEE
T ss_pred             CCcc
Confidence            7653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.11  E-value=5.7e-07  Score=88.73  Aligned_cols=133  Identities=10%  Similarity=0.027  Sum_probs=95.7

Q ss_pred             CCCccEEEecCCCCCCHH-----------------HHHHH-HhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEec
Q 025607           37 RGSIRTLIFHFNLYVSDD-----------------QLTYT-AERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP   98 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~-----------------~L~~i-~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls   98 (250)
                      .++++.|+++++. ++.+                 .-..+ ...+++|+.|+|++|.....  +...+.++++|+.|+|+
T Consensus       447 L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          447 LTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECT
T ss_pred             CCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECc
Confidence            4678899988765 4441                 11222 12689999999998853331  22456789999999999


Q ss_pred             CCC-CCH-HHHHHHHH------hCCCCceeEecCC-CCHHHHHH--HHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCc
Q 025607           99 SIA-NPP-YLMEEIAQ------NCRNFRELKIMGP-FDLLFAST--LNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE  167 (250)
Q Consensus        99 ~c~-~~d-~~l~~i~~------~c~~L~~L~L~~~-i~d~~~~~--i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~  167 (250)
                      +|. ++. .....++.      .+|+|+.|+++++ ++  .+..  ....+++|+.|+|+.+.++  .+. .+..+++|+
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~  598 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLT  598 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEES
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcce
Confidence            996 887 55444543      4579999999998 65  2222  2238999999999888888  444 456789999


Q ss_pred             EEeeeCCCCc
Q 025607          168 VLNISHCLLI  177 (250)
Q Consensus       168 ~Ldls~C~~i  177 (250)
                      .|+++++..-
T Consensus       599 ~L~Ls~N~l~  608 (876)
T 4ecn_A          599 DLKLDYNQIE  608 (876)
T ss_dssp             EEECCSSCCS
T ss_pred             EEECcCCccc
Confidence            9999999754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.10  E-value=9.6e-08  Score=89.63  Aligned_cols=153  Identities=12%  Similarity=0.067  Sum_probs=101.0

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHH--HHHHhC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLME--EIAQNC  114 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~--~i~~~c  114 (250)
                      .+.++.|+++++... ..........+++|+.|+++++. ++.. ....+.++++|++|++++|.+++..+.  .....+
T Consensus       399 l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l  475 (606)
T 3t6q_A          399 CPQLELLDLAFTRLK-VKDAQSPFQNLHLLKVLNLSHSL-LDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL  475 (606)
T ss_dssp             CTTCSEEECTTCCEE-CCTTCCTTTTCTTCCEEECTTCC-CBTT-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred             CccCCeEECCCCcCC-CcccchhhhCcccCCEEECCCCc-cCCc-CHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence            567889988776432 11111123468899999999874 3321 123356789999999999977653221  123568


Q ss_pred             CCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhh
Q 025607          115 RNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLD  193 (250)
Q Consensus       115 ~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~  193 (250)
                      ++|++|+++++ ++......+. .+++|++|+++++.++...... +.+++.| +|++++|..-..             .
T Consensus       476 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L-~L~L~~N~l~~~-------------~  539 (606)
T 3t6q_A          476 GRLEILVLSFCDLSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEA-LSHLKGI-YLNLASNHISII-------------L  539 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCGGGGGG-GTTCCSC-EEECCSSCCCCC-------------C
T ss_pred             CCccEEECCCCccCccChhhhc-cccCCCEEECCCCccCcCChhH-hCccccc-EEECcCCccccc-------------C
Confidence            99999999988 5432222333 7899999999989998765443 4578889 999999965432             1


Q ss_pred             HHHHHHHHhhhhhhc
Q 025607          194 RTILQKAARLRKFLT  208 (250)
Q Consensus       194 ~~i~~~~~~L~~l~~  208 (250)
                      ...+...++|+.+..
T Consensus       540 ~~~~~~l~~L~~L~l  554 (606)
T 3t6q_A          540 PSLLPILSQQRTINL  554 (606)
T ss_dssp             GGGHHHHHTSSEEEC
T ss_pred             HhhcccCCCCCEEeC
Confidence            334455667777543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.10  E-value=2.3e-07  Score=77.70  Aligned_cols=134  Identities=17%  Similarity=0.124  Sum_probs=86.3

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      ..++.|+++++.. +.-.-. ....+++|++|+|+++ .++.. ....+..+++|+.|++++|.++.-.. .....+++|
T Consensus        35 ~~l~~L~L~~n~l-~~~~~~-~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  109 (251)
T 3m19_A           35 ADTEKLDLQSTGL-ATLSDA-TFRGLTKLTWLNLDYN-QLQTL-SAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQL  109 (251)
T ss_dssp             TTCCEEECTTSCC-CCCCTT-TTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             CCCCEEEccCCCc-CccCHh-HhcCcccCCEEECCCC-cCCcc-CHhHhccCCcCCEEECCCCcccccCh-hHhcccCCC
Confidence            4677787776542 211111 1235789999999976 44431 11235678999999999997653221 122467999


Q ss_pred             ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      ++|+++++ ++.-.. .....+++|++|+|+++.++.-.- ..+.++++|++|+++++..-.
T Consensus       110 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A          110 DKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred             CEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCc
Confidence            99999887 542111 112368999999998888874221 134578999999999996543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.10  E-value=1.6e-07  Score=81.64  Aligned_cols=127  Identities=16%  Similarity=0.145  Sum_probs=65.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHH-HHHHHHhCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL-MEEIAQNCR  115 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~-l~~i~~~c~  115 (250)
                      .++++.|+++++. ++.  +.  ....++|+.|+++++ .++... ...+.++++|+.|++++|.++... .......++
T Consensus        99 l~~L~~L~Ls~n~-l~~--l~--~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  171 (330)
T 1xku_A           99 LVKLERLYLSKNQ-LKE--LP--EKMPKTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK  171 (330)
T ss_dssp             CTTCCEEECCSSC-CSB--CC--SSCCTTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred             CCCCCEEECCCCc-CCc--cC--hhhcccccEEECCCC-cccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence            3466666666543 210  00  011256777777665 233211 123456677777777777554311 111223467


Q ss_pred             CCceeEecCC-CCHHHHHHHH-hcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          116 NFRELKIMGP-FDLLFASTLN-MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~-~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      +|++|+++++ ++.     +. ...++|++|+++++.++..... .+.++++|++|+++++..
T Consensus       172 ~L~~L~l~~n~l~~-----l~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          172 KLSYIRIADTNITT-----IPQGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             TCCEEECCSSCCCS-----CCSSCCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCC
T ss_pred             CcCEEECCCCcccc-----CCccccccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcC
Confidence            7777777665 331     10 1235777777766666643222 234567777777777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.09  E-value=8.9e-08  Score=86.80  Aligned_cols=130  Identities=18%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++++. ++.- -......+++|+.|+|++++.++.-.- ..+.++++|++|++++|.++.-  .. ...+++
T Consensus       135 l~~L~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~  208 (440)
T 3zyj_A          135 LSKLKELWLRNNP-IESI-PSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREI--PN-LTPLIK  208 (440)
T ss_dssp             CSSCCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSC--CC-CTTCSS
T ss_pred             cccCceeeCCCCc-cccc-CHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccc--cc-cCCCcc
Confidence            3567777776553 2210 001123466777777776654432110 1244566666666666644311  01 233456


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  174 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C  174 (250)
                      |++|+++++ ++......+ ..+++|++|++..+.++..... .+.++++|++|+++++
T Consensus       209 L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHN  265 (440)
T ss_dssp             CCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCCCCEECTT-SSTTCTTCCEEECTTS
T ss_pred             cCEEECCCCccCccChhhh-ccCccCCEEECCCCceeEEChh-hhcCCCCCCEEECCCC
Confidence            666666555 322111111 1445555555544444432111 1233445555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.08  E-value=2.6e-07  Score=87.88  Aligned_cols=111  Identities=9%  Similarity=0.093  Sum_probs=69.2

Q ss_pred             CCCccEEEecCCCCCCHH-----------------HHHHHH-hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEec
Q 025607           37 RGSIRTLIFHFNLYVSDD-----------------QLTYTA-ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP   98 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~-----------------~L~~i~-~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls   98 (250)
                      .++++.|+++++. ++..                 .-..++ ..+++|++|+|++|....  .+...+.++++|++|+++
T Consensus       205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECT
T ss_pred             ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECc
Confidence            4577888887765 4442                 111111 257888888888774332  122345678888888888


Q ss_pred             CCC-CCH-HHHHHHHH-----hCCCCceeEecCC-CCHHHHH--HHHhcCCCccEEEeecCCCC
Q 025607           99 SIA-NPP-YLMEEIAQ-----NCRNFRELKIMGP-FDLLFAS--TLNMYLPKLKVLSLRCTTLN  152 (250)
Q Consensus        99 ~c~-~~d-~~l~~i~~-----~c~~L~~L~L~~~-i~d~~~~--~i~~~~~~L~~L~L~~~~it  152 (250)
                      +|. ++. .....++.     .+++|++|+++++ ++ ....  .+. .+++|++|+++.+.++
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLE  343 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCc
Confidence            886 776 55555554     3588888888877 55 1111  233 6777888887666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.08  E-value=1.5e-07  Score=74.52  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=75.7

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .++|+.|+++++ .++.. ....+.++++|++|++++|.++.-. ......+++|++|+++++ ++.-... ....+++|
T Consensus        27 ~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L  102 (177)
T 2o6r_A           27 PSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNG-VFDKLTQL  102 (177)
T ss_dssp             CTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTC
T ss_pred             CCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHH-HhhCCccc
Confidence            468999999976 34421 1123577899999999999765321 112246799999999988 5421111 22368999


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      ++|+++.+.++.-. ..+...+++|++|+++++...
T Consensus       103 ~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          103 KELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             CEEECcCCcceEeC-HHHhcCCcccCEEEecCCCee
Confidence            99999888887321 233467899999999998654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.08  E-value=1.3e-07  Score=86.11  Aligned_cols=130  Identities=21%  Similarity=0.241  Sum_probs=60.3

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++++. ++. .-......+++|+.|+|++|+.++.-.- ..+.++++|+.|++++|.+++-  .. ...+++
T Consensus       146 l~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~  219 (452)
T 3zyi_A          146 LSKLRELWLRNNP-IES-IPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDM--PN-LTPLVG  219 (452)
T ss_dssp             CTTCCEEECCSCC-CCE-ECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSC--CC-CTTCTT
T ss_pred             cCCCCEEECCCCC-cce-eCHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccccc--cc-cccccc
Confidence            4567777776653 221 0011123567777777776655432110 1234566666666666644321  11 123456


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  174 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C  174 (250)
                      |++|+++++ ++......+. .+++|+.|++..+.++..... .+.++++|++|+++++
T Consensus       220 L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          220 LEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHN  276 (452)
T ss_dssp             CCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSS
T ss_pred             ccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCC
Confidence            666666555 3221111121 445555555544444432111 1234455555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.08  E-value=7.6e-08  Score=82.84  Aligned_cols=109  Identities=22%  Similarity=0.219  Sum_probs=56.9

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      ..++|+.|+|+++ .++  .+...+..+++|+.|++++|.++.-.... ...+++|++|+++++ ++.-.. .+...+++
T Consensus        75 ~l~~L~~L~Ls~N-~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~  149 (290)
T 1p9a_G           75 TLPVLGTLDLSHN-QLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNELKTLPP-GLLTPTPK  149 (290)
T ss_dssp             CCTTCCEEECCSS-CCS--SCCCCTTTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSCCCCCCT-TTTTTCTT
T ss_pred             CCCcCCEEECCCC-cCC--cCchhhccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCCCCccCh-hhcccccC
Confidence            4566666666654 332  12223455667777777776544211111 134567777777666 331111 11125667


Q ss_pred             ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      |+.|+|+.|.++.-. ..+..++++|++|+++++..
T Consensus       150 L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          150 LEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             CCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcC
Confidence            777777666665211 12234567777777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.05  E-value=1.5e-07  Score=92.35  Aligned_cols=135  Identities=16%  Similarity=0.080  Sum_probs=69.5

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      +.++.|+++++. ++.-.... ...+++|+.|+|+++..+..-. ...+.++++|+.|+|++|.++......+ ..+++|
T Consensus        24 ~~l~~LdLs~N~-i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L   99 (844)
T 3j0a_A           24 NTTERLLLSFNY-IRTVTASS-FPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHL   99 (844)
T ss_dssp             TTCCEEEEESCC-CCEECSSS-CSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSC
T ss_pred             CCcCEEECCCCc-CCccChhH-CcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCcCcccCHhHc-cCCccc
Confidence            456666666543 22110001 1346677777777663322100 1224566777777777765543222222 245677


Q ss_pred             ceeEecCC-CCHHHHHH-HHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          118 RELKIMGP-FDLLFAST-LNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~-i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ++|+++++ +++..... ....+++|++|+|+.|.++.......+.++++|++|+++++..
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            77777666 43321111 1125667777777666665433333345667777777776643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.05  E-value=1.2e-07  Score=87.46  Aligned_cols=59  Identities=14%  Similarity=0.055  Sum_probs=29.9

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA  101 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~  101 (250)
                      .++++.|+++++. +++-.... ...+++|+.|+|+++. ++...  . +..+++|+.|+|++|.
T Consensus        33 ~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~   91 (487)
T 3oja_A           33 AWNVKELDLSGNP-LSQISAAD-LAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNY   91 (487)
T ss_dssp             GGGCCEEECCSSC-CCCCCGGG-GTTCTTCCEEECTTSC-CEEEE--E-CTTCTTCCEEECCSSE
T ss_pred             CCCccEEEeeCCc-CCCCCHHH-HhCCCCCCEEEeeCCC-CCCCc--c-cccCCCCCEEEecCCc
Confidence            3467777776653 22211111 1356777777777653 32110  0 4455666666665553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.05  E-value=3e-07  Score=76.24  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=77.0

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .++|+.|+|+++ .++.. ....+.++++|++|+|++|.++.-. ......+++|+.|+++++ ++.-.. .....+++|
T Consensus        39 ~~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L  114 (229)
T 3e6j_A           39 PTNAQILYLHDN-QITKL-EPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHL  114 (229)
T ss_dssp             CTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCCCCEEEcCCC-ccCcc-CHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccCh-hHhCcchhh
Confidence            378999999986 34321 1123578899999999999664211 122246799999999988 542111 122378999


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +.|+|+++.++  .+..-+.++++|++|+++++..-
T Consensus       115 ~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A          115 KELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             CeEeccCCccc--ccCcccccCCCCCEEECCCCcCC
Confidence            99999999988  34333478999999999998543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.05  E-value=2.7e-07  Score=74.64  Aligned_cols=109  Identities=15%  Similarity=0.130  Sum_probs=76.4

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .++|+.|+|++. .++.  +...+.++++|+.|++++|.++.-....+ ..+++|++|+++++ ++.-...++ ..+++|
T Consensus        30 ~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L  104 (193)
T 2wfh_A           30 PRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPPRTF-DGLKSL  104 (193)
T ss_dssp             CTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCTTTT-TTCTTC
T ss_pred             CCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCHHHh-CCCCCC
Confidence            368999999976 4542  22457889999999999997653222222 35799999999987 443221223 378999


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +.|+|+.|.++.-. ......+++|+.|++++..-.
T Consensus       105 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          105 RLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence            99999888887421 123456899999999987654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.05  E-value=1.9e-07  Score=77.04  Aligned_cols=133  Identities=16%  Similarity=0.149  Sum_probs=80.5

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      ..++.|.++++. ++.-. ......+++|+.|+|+++ .++.. ....+.++++|+.|+|++|.++.- ...+...+++|
T Consensus        32 ~~l~~L~l~~n~-i~~i~-~~~~~~l~~L~~L~Ls~N-~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIP-PGAFSPYKKLRRIDLSNN-QISEL-APDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSC-CCEEC-TTSSTTCTTCCEEECCSS-CCCEE-CTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             cCCCEEECCCCc-CCCcC-HhHhhCCCCCCEEECCCC-cCCCc-CHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCC
Confidence            456777776543 22100 001235678899998876 34321 012356778899999988866521 11222457889


Q ss_pred             ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +.|+++++ ++.-....+. .+++|+.|+|+.|.++.-.- ..+..+++|++|++++..-.
T Consensus       107 ~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcC
Confidence            99999877 4332122222 67889999998787765322 22456788999998887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.05  E-value=3.6e-07  Score=86.02  Aligned_cols=36  Identities=22%  Similarity=0.159  Sum_probs=17.0

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      .+++|+.|+|++|.++.  +. -+.++++|+.|+++++.
T Consensus       484 ~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             GCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC
T ss_pred             cCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC
Confidence            44555555554454443  22 23344555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.05  E-value=1.3e-07  Score=85.99  Aligned_cols=132  Identities=20%  Similarity=0.103  Sum_probs=69.1

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .+.++.|+++.+..++.-.. .....+++|+.|+|+++. ++.-   ..+..+++|++|+|++|.++......+ ..+++
T Consensus       170 l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~  243 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCN-IKDM---PNLTPLVGLEELEMSGNHFPEIRPGSF-HGLSS  243 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSC-CSSC---CCCTTCTTCCEEECTTSCCSEECGGGG-TTCTT
T ss_pred             CCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCc-cccc---ccccccccccEEECcCCcCcccCcccc-cCccC
Confidence            45566666655333321100 011246677777777653 3221   124566777777777775543222222 34577


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      |++|+++++ ++......+ ..+++|+.|+|++|.++.-. ......+++|+.|++++++-
T Consensus       244 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          244 LKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEECCSSCE
T ss_pred             CCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEccCCCc
Confidence            777777666 332211122 25677777777666666321 12234567777777777653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.03  E-value=6.7e-06  Score=75.99  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=26.7

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHH--HHhcCCCCCEEEecCCCCCHHHH-HHHHHhCCCCceeEecCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICK--AIRMWRDLESLTMPSIANPPYLM-EEIAQNCRNFRELKIMGP  125 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~--~~~~c~~L~~L~Ls~c~~~d~~l-~~i~~~c~~L~~L~L~~~  125 (250)
                      .+++|+.|+|+++ .+++.....  .+..+++|+.|++++|.++.-.. ......+++|++|+++++
T Consensus       332 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          332 HLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence            3455555555543 333322211  12344555555555554432211 122334455555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.02  E-value=1.4e-06  Score=79.80  Aligned_cols=120  Identities=18%  Similarity=0.094  Sum_probs=77.0

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .+.++.|+++++. +++-  ..+ ..+++|++|+|+++ .++.-    .+..+++|++|++++|.++.-.    ...+++
T Consensus        41 l~~L~~L~Ls~n~-l~~~--~~l-~~l~~L~~L~Ls~n-~l~~~----~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~  107 (457)
T 3bz5_A           41 LATLTSLDCHNSS-ITDM--TGI-EKLTGLTKLICTSN-NITTL----DLSQNTNLTYLACDSNKLTNLD----VTPLTK  107 (457)
T ss_dssp             HTTCCEEECCSSC-CCCC--TTG-GGCTTCSEEECCSS-CCSCC----CCTTCTTCSEEECCSSCCSCCC----CTTCTT
T ss_pred             cCCCCEEEccCCC-cccC--hhh-cccCCCCEEEccCC-cCCeE----ccccCCCCCEEECcCCCCceee----cCCCCc
Confidence            3567788887653 3321  122 46788888888876 34432    1567788888888888665431    235788


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      |++|+++++ ++.-   .+ ..+++|++|+++.+.++.-.    +.++++|++|++++|..+
T Consensus       108 L~~L~L~~N~l~~l---~~-~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL---DV-SQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             CCEEECCSSCCSCC---CC-TTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCC
T ss_pred             CCEEECCCCcCCee---cC-CCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcc
Confidence            888888877 4431   12 36778888888777776521    345677777777777544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.02  E-value=1.7e-06  Score=75.88  Aligned_cols=137  Identities=18%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             CCCccEEEecCCCCCCHHHHHH--HHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHH--------
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTY--TAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL--------  106 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~--i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~--------  106 (250)
                      .++++.|+++++.. +.  +..  ....+++|++|+++++..++... ...+.++++|++|++++|.++...        
T Consensus       123 l~~L~~L~L~~n~l-~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  198 (353)
T 2z80_A          123 LSSLTFLNLLGNPY-KT--LGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ  198 (353)
T ss_dssp             CTTCSEEECTTCCC-SS--SCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred             CccCCEEECCCCCC-cc--cCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence            46777777766532 21  111  12356777777777664333210 012334555555555555433221        


Q ss_pred             ---------------HHHHHHhCCCCceeEecCC-CCHHHHH--HHHhcCCCccEEEeecCCCCHHHHHHH---HhcCCC
Q 025607          107 ---------------MEEIAQNCRNFRELKIMGP-FDLLFAS--TLNMYLPKLKVLSLRCTTLNRDALILI---LDGLQN  165 (250)
Q Consensus       107 ---------------l~~i~~~c~~L~~L~L~~~-i~d~~~~--~i~~~~~~L~~L~L~~~~itd~~l~~i---~~~c~~  165 (250)
                                     ...+...+++|++|+++++ +++....  ......+.++.+++..+.+++.++..+   +.++++
T Consensus       199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~  278 (353)
T 2z80_A          199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG  278 (353)
T ss_dssp             EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred             cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence                           1122223445555555443 2211000  001123344444444444555544443   456778


Q ss_pred             CcEEeeeCCCCc
Q 025607          166 LEVLNISHCLLI  177 (250)
Q Consensus       166 L~~Ldls~C~~i  177 (250)
                      |++|++++|..-
T Consensus       279 L~~L~Ls~N~l~  290 (353)
T 2z80_A          279 LLELEFSRNQLK  290 (353)
T ss_dssp             CCEEECCSSCCC
T ss_pred             CCEEECCCCCCC
Confidence            888888877543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.01  E-value=3.6e-07  Score=83.36  Aligned_cols=134  Identities=19%  Similarity=0.104  Sum_probs=81.2

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++|+.|+++.+. ++.-. ......+++|+.|+|+++. ++.. ....+.++++|++|++++|.++......+ ..+++
T Consensus        79 l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~  153 (477)
T 2id5_A           79 LFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKLDISENK-IVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNS  153 (477)
T ss_dssp             CTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTT
T ss_pred             CccCCEEECCCCc-CCccC-cccccCCCCCCEEECCCCc-cccC-ChhHccccccCCEEECCCCccceeChhhc-cCCCC
Confidence            4678888887653 22110 1112457899999998763 3321 11235678899999998886643322222 35788


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      |++|+++++ ++.-....+. .+++|+.|++..+.++...- ..+..+++|++|++++|..+
T Consensus       154 L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          154 LEQLTLEKCNLTSIPTEALS-HLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             CCEEEEESCCCSSCCHHHHT-TCTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECCTTC
T ss_pred             CCEEECCCCcCcccChhHhc-ccCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCCccc
Confidence            999999887 4432222333 67888888887777654221 12345677777777776543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.01  E-value=5.9e-07  Score=84.69  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=16.6

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      .+++|+.|+|++|.++...    ...+++|+.|+++++.
T Consensus       322 ~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             HHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSC
T ss_pred             cCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCC
Confidence            3455555555444444321    2334555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.00  E-value=2.4e-07  Score=85.44  Aligned_cols=61  Identities=10%  Similarity=0.001  Sum_probs=27.2

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  125 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~  125 (250)
                      +++|+.|+|+++ .++.. ....+.++++|+.|++++|.++......+...+++|+.|+++++
T Consensus       119 l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          119 GQGKKNIYLANN-KITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CSSCEEEECCSS-CCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             cCCCCEEECCCC-CCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            355555555544 22211 00112344555555555554444333333334455555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.99  E-value=3.4e-07  Score=75.51  Aligned_cols=134  Identities=15%  Similarity=0.085  Sum_probs=82.6

Q ss_pred             CccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCc
Q 025607           39 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  118 (250)
Q Consensus        39 ~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~  118 (250)
                      .++.|.++++. ++.-.-..+...+++|+.|+|+++ .++.-. ...+.++++|++|+|++|.++.-.... ...+++|+
T Consensus        33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~  108 (220)
T 2v70_A           33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIE-EGAFEGASGVNEILLTSNRLENVQHKM-FKGLESLK  108 (220)
T ss_dssp             TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGG-GTTCSSCC
T ss_pred             CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEEC-HHHhCCCCCCCEEECCCCccCccCHhH-hcCCcCCC
Confidence            45566666543 221100111246789999999876 344211 123567889999999998664322212 24578999


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          119 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       119 ~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +|+++++ ++.-....+. .+++|+.|+|+.|.++.-. ...+..+++|++|+++++.-.-
T Consensus       109 ~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          109 TLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             EEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEEC
T ss_pred             EEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcC
Confidence            9999887 4422112222 6789999999888877532 1234568899999999886543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.99  E-value=1.4e-07  Score=85.52  Aligned_cols=107  Identities=15%  Similarity=0.183  Sum_probs=46.5

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      .+++|+.|+|+++. ++.  +. .+..+++|++|+|++|.++.-....+ ..+++|++|+++++ ++......+ ..+++
T Consensus       183 ~l~~L~~L~L~~n~-l~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~  256 (440)
T 3zyj_A          183 GLSNLRYLNLAMCN-LRE--IP-NLTPLIKLDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERNAF-DNLQS  256 (440)
T ss_dssp             TCSSCCEEECTTSC-CSS--CC-CCTTCSSCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTSS-TTCTT
T ss_pred             cccccCeecCCCCc-Ccc--cc-ccCCCcccCEEECCCCccCccChhhh-ccCccCCEEECCCCceeEEChhhh-cCCCC
Confidence            34555555555542 221  10 13445555555555554432211111 23455555555554 322111111 14555


Q ss_pred             ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      |+.|+|+.|.++.-. ..++..+++|+.|++++++
T Consensus       257 L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          257 LVEINLAHNNLTLLP-HDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCEEECTTSCCCCCC-TTTTSSCTTCCEEECCSSC
T ss_pred             CCEEECCCCCCCccC-hhHhccccCCCEEEcCCCC
Confidence            555555555554221 1122345555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.98  E-value=1.1e-07  Score=84.13  Aligned_cols=111  Identities=17%  Similarity=0.150  Sum_probs=60.4

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      .+++|+.|+|+++ .++.-. ...+.++++|++|+|++|.++.-.. .....+++|+.|+|+++ ++.-....+ ..+++
T Consensus        62 ~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~  137 (361)
T 2xot_A           62 RLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVVDRNAF-EDMAQ  137 (361)
T ss_dssp             CCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTT-TTCTT
T ss_pred             cccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEECHHHh-CCccc
Confidence            5677777777765 333211 0124567777777777775542111 11234677777777766 432111122 25677


Q ss_pred             ccEEEeecCCCCHHHHHHH--HhcCCCCcEEeeeCCCC
Q 025607          141 LKVLSLRCTTLNRDALILI--LDGLQNLEVLNISHCLL  176 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~~i--~~~c~~L~~Ldls~C~~  176 (250)
                      |++|+|+.|.++.-....+  ...+++|+.||++++..
T Consensus       138 L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            7777777676664221111  13467777777777643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.96  E-value=9.8e-07  Score=78.40  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCc
Q 025607           89 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE  167 (250)
Q Consensus        89 c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~  167 (250)
                      .++|+.|++++|.+++.   .....+++|++|+++++ +++.....+. .+++|++|+++++.++.-  ......+|+|+
T Consensus       225 ~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~  298 (390)
T 3o6n_A          225 NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL--NLYGQPIPTLK  298 (390)
T ss_dssp             CSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCEE--ECSSSCCTTCC
T ss_pred             cccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCccc--CcccCCCCCCC
Confidence            35677777777755543   12345677777777666 4332122222 566777777766666542  11223467777


Q ss_pred             EEeeeCCCC
Q 025607          168 VLNISHCLL  176 (250)
Q Consensus       168 ~Ldls~C~~  176 (250)
                      +|++++|..
T Consensus       299 ~L~L~~n~l  307 (390)
T 3o6n_A          299 VLDLSHNHL  307 (390)
T ss_dssp             EEECCSSCC
T ss_pred             EEECCCCcc
Confidence            777777743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.95  E-value=1.8e-06  Score=79.02  Aligned_cols=98  Identities=17%  Similarity=0.110  Sum_probs=53.3

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      +++|+.|+++++..++..    .+..+++|+.|++++|.++.-  .  ...+++|++|+++++ ++.-   .+ ..+++|
T Consensus       147 l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~L~l~~N~l~~~---~l-~~l~~L  214 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITEL--D--VSQNKLLNRLNCDTNNITKL---DL-NQNIQL  214 (457)
T ss_dssp             CTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCC--C--CTTCTTCCEEECCSSCCSCC---CC-TTCTTC
T ss_pred             CCcCCEEECCCCCccccc----ccccCCcCCEEECCCCcccee--c--cccCCCCCEEECcCCcCCee---cc-ccCCCC
Confidence            444444544444333221    134456666666666654431  1  234566777777665 3322   12 256777


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      +.|+++.+.++.  +.  +..+++|++|+++++..
T Consensus       215 ~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          215 TFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             SEEECCSSCCSC--CC--CTTCTTCSEEECCSSCC
T ss_pred             CEEECcCCcccc--cC--ccccCCCCEEEeeCCcC
Confidence            777776666665  22  45677777777777653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.92  E-value=3.1e-06  Score=80.48  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=84.3

Q ss_pred             hhCCCCcEEEcCCCCCCCHH----------------HHHHHHh--cCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEe
Q 025607           61 ERCPQLKRLVMPAWNRIKKT----------------GICKAIR--MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI  122 (250)
Q Consensus        61 ~~c~~L~~L~L~~c~~itd~----------------~l~~~~~--~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L  122 (250)
                      ..+++|++|+|+++. ++..                .+...+.  ++++|++|++++|.++......++ .+++|++|++
T Consensus       203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L  280 (636)
T 4eco_A          203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINV  280 (636)
T ss_dssp             GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEEC
T ss_pred             hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEEC
Confidence            468999999999874 6541                1333345  899999999999976544333333 5799999999


Q ss_pred             cCC--CCH-HHHHHHHh-----cCCCccEEEeecCCCCHHHHHH--HHhcCCCCcEEeeeCCCCc
Q 025607          123 MGP--FDL-LFASTLNM-----YLPKLKVLSLRCTTLNRDALIL--ILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       123 ~~~--i~d-~~~~~i~~-----~~~~L~~L~L~~~~itd~~l~~--i~~~c~~L~~Ldls~C~~i  177 (250)
                      +++  ++. .....+..     .+++|++|+++.+.++  .+..  .+.++++|++|++++|..-
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence            988  776 44444442     3599999999989988  4554  6778999999999998754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.91  E-value=4.1e-07  Score=78.22  Aligned_cols=133  Identities=17%  Similarity=0.105  Sum_probs=87.5

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++++.|+++.+. ++  .+.......++|+.|+|+++ .++.-. ...+.++++|++|++++|.++.-. ..+...++
T Consensus        75 ~l~~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~  148 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFN-RLTSLP-LGALRGLGELQELYLKGNELKTLP-PGLLTPTP  148 (290)
T ss_dssp             CCTTCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCT
T ss_pred             CCCcCCEEECCCCc-CC--cCchhhccCCCCCEEECCCC-cCcccC-HHHHcCCCCCCEEECCCCCCCccC-hhhccccc
Confidence            34567777776653 22  11122346789999999976 444210 123567899999999999765321 12224579


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +|+.|+++++ ++.-. ..+...+++|+.|+|+.|.++.  +..-+...+.|+.|++++.+-.
T Consensus       149 ~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          149 KLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCcc
Confidence            9999999988 44211 1122468999999999898882  3333445688999999987654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.91  E-value=1.9e-07  Score=75.38  Aligned_cols=110  Identities=13%  Similarity=0.087  Sum_probs=76.0

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      ++|+.|+|++. .++...-...+.++++|++|+|++|.++.-....+ ..+++|++|+++++ ++.-....+ ..+++|+
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~  105 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISNKMF-LGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECSSSS-TTCTTCC
T ss_pred             CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCCccCHHHh-cCCCCCC
Confidence            48999999976 44432111236788999999999997764322223 35799999999987 443221122 2689999


Q ss_pred             EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +|+|++|.++... ...+..+++|++|+++++.-.
T Consensus       106 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          106 TLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence            9999989888532 122456899999999998754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.87  E-value=3.1e-07  Score=75.70  Aligned_cols=112  Identities=11%  Similarity=0.078  Sum_probs=77.4

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .+.++.|+|++. .++...-..++.++++|++|++++|.++.-....+ ..+++|++|+++++ ++.-....+ ..+++|
T Consensus        31 ~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L  107 (220)
T 2v70_A           31 PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRLENVQHKMF-KGLESL  107 (220)
T ss_dssp             CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCGGGG-TTCSSC
T ss_pred             CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCccCccCHhHh-cCCcCC
Confidence            356899999976 45432111236789999999999997754222122 45799999999988 443222222 378999


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      ++|+|+.|.++...- ..+.++++|++|+++++..-+
T Consensus       108 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A          108 KTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITT  143 (220)
T ss_dssp             CEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCC
T ss_pred             CEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCE
Confidence            999998888875321 223578999999999986544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.86  E-value=2e-06  Score=80.97  Aligned_cols=107  Identities=16%  Similarity=0.164  Sum_probs=73.1

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      ++|+.|+|+++ .+++.   ..+..+++|+.|+|++|.++......+ ..+++|+.|+++++ ++.  +......+|+|+
T Consensus       232 ~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~  304 (597)
T 3oja_B          232 VELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVA--LNLYGQPIPTLK  304 (597)
T ss_dssp             SCCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSCCCE--EECSSSCCTTCC
T ss_pred             CCCCEEECCCC-CCCCC---hhhccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCCCCC--CCcccccCCCCc
Confidence            45666666655 34332   346788999999999987765433333 35789999999887 443  111123589999


Q ss_pred             EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      .|+|++|.++.  +..-+..+++|++|++++|...+.
T Consensus       305 ~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          305 VLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             EEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             EEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCc
Confidence            99998888873  333346689999999999976543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.85  E-value=6e-07  Score=85.39  Aligned_cols=87  Identities=18%  Similarity=0.188  Sum_probs=41.8

Q ss_pred             hcCCCCCEEEecCCCCCHHHHH-------HHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHH
Q 025607           87 RMWRDLESLTMPSIANPPYLME-------EIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALIL  158 (250)
Q Consensus        87 ~~c~~L~~L~Ls~c~~~d~~l~-------~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~  158 (250)
                      .++++|++|++++|.++.-.-.       .....+++|++|+++++ ++.-.. .....+++|+.|+++++.++.-. ..
T Consensus       501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~  578 (680)
T 1ziw_A          501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTLP-AS  578 (680)
T ss_dssp             TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TT
T ss_pred             ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH-HHcccccCcceeECCCCCCCcCC-Hh
Confidence            4455555566555544321000       01234566666666655 331000 01125666677777666665211 11


Q ss_pred             HHhcCCCCcEEeeeCCC
Q 025607          159 ILDGLQNLEVLNISHCL  175 (250)
Q Consensus       159 i~~~c~~L~~Ldls~C~  175 (250)
                      ...++++|+.|+++++.
T Consensus       579 ~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          579 VFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             TTTTCTTCCEEECTTSC
T ss_pred             HhCCCCCCCEEECCCCc
Confidence            23456777777777763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.84  E-value=6.2e-07  Score=87.96  Aligned_cols=132  Identities=12%  Similarity=0.077  Sum_probs=80.1

Q ss_pred             cCCCccEEEecCCCCCC---HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH-HH
Q 025607           36 SRGSIRTLIFHFNLYVS---DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEE-IA  111 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~---d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~-i~  111 (250)
                      ...+|+.|+++++..+.   ++.+    ..+++|+.|+|+++. ++.. ....+.++++|++|+|++|.+++..+.. ..
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f----~~L~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAF----RNLPNLRILDLGSSK-IYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTT----SSCTTCCEEECTTCC-CCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             ccccCeEEeCCCCCCccccCHHHh----cCCCCCCEEECCCCc-Cccc-CHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence            35678888887764322   2222    467889999998763 3321 1223567889999999988766533222 12


Q ss_pred             HhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCH---HHHHHHHhcCCCCcEEeeeCCC
Q 025607          112 QNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNR---DALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       112 ~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd---~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      ..+++|++|+++++ ++..........+++|++|+++++.++.   ..+..+..  ++|+.|+++++.
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~  185 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANS  185 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSB
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCc
Confidence            45788999999887 4432221122378899999997777654   33333321  455555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.82  E-value=1.1e-06  Score=83.60  Aligned_cols=136  Identities=13%  Similarity=0.048  Sum_probs=86.7

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHH---H----HHHHhcCCCCCEEEecCCCCCHHHHHH
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTG---I----CKAIRMWRDLESLTMPSIANPPYLMEE  109 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~---l----~~~~~~c~~L~~L~Ls~c~~~d~~l~~  109 (250)
                      .+.++.|+++.+. ++. ........+++|+.|+|+++ .++.-.   +    ...+.++++|+.|++++|.++. ....
T Consensus       479 l~~L~~L~Ls~N~-l~~-i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~  554 (680)
T 1ziw_A          479 LRNLTILDLSNNN-IAN-INDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVE  554 (680)
T ss_dssp             CTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred             CCCCCEEECCCCC-CCc-CChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHH
Confidence            4567777776643 221 00111245788999999876 333210   0    0125788999999999997652 1111


Q ss_pred             HHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          110 IAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       110 i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      ....+++|++|+++++ ++.-.. .+...+++|+.|+++.|.++.-....+...+++|+.|++++++-.
T Consensus       555 ~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          555 VFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             HcccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            2356899999999987 542111 122378999999998888875443333336799999999987654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.82  E-value=2.8e-06  Score=71.80  Aligned_cols=111  Identities=12%  Similarity=0.062  Sum_probs=44.5

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|+++++. ++.-.- .....+++|++|+|+++. ++... ...+.++++|++|++++|.++.-.... ...+++
T Consensus        51 l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~  125 (276)
T 2z62_A           51 FPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLSSLQKLVAVETNLASLENFP-IGHLKT  125 (276)
T ss_dssp             CTTCSEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCC-CTTCTT
T ss_pred             ccCCcEEECCCCc-CCccCH-HHccCCcCCCEEECCCCc-cCccC-hhhhcCCccccEEECCCCCccccCchh-cccCCC
Confidence            3456666665542 221000 011245666666666542 22110 012344555555555555332211000 123455


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN  152 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~it  152 (250)
                      |++|+++++ ++...+......+++|++|+++++.++
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            555555544 322111111124455555555444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.81  E-value=3.3e-07  Score=79.80  Aligned_cols=37  Identities=30%  Similarity=0.397  Sum_probs=16.3

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      .+++|++|+++++.++.  +..-+..+++|++|+++++.
T Consensus       239 ~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             GCTTCCEEECCSSCCCB--CCTTGGGCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCcCee--cChhhhcCccCCEEECCCCC
Confidence            34455555554444441  21113344555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.81  E-value=1.9e-05  Score=67.32  Aligned_cols=84  Identities=21%  Similarity=0.137  Sum_probs=58.0

Q ss_pred             HhcCCCCCEEEecCCCCCH-HHHHHHHHhCCCCceeEecCC-CCHH-HHHHHHhcCCCccEEEeecCCCCH------HHH
Q 025607           86 IRMWRDLESLTMPSIANPP-YLMEEIAQNCRNFRELKIMGP-FDLL-FASTLNMYLPKLKVLSLRCTTLNR------DAL  156 (250)
Q Consensus        86 ~~~c~~L~~L~Ls~c~~~d-~~l~~i~~~c~~L~~L~L~~~-i~d~-~~~~i~~~~~~L~~L~L~~~~itd------~~l  156 (250)
                      ..++|+|+.|+|++|.++. ..+..+...+|+|+.|+|+++ +++- .+..+. .+ +|++|+|.+|.++.      .-.
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred             HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHH
Confidence            3678999999999987654 223344457899999999887 5542 232222 23 89999998888874      234


Q ss_pred             HHHHhcCCCCcEEee
Q 025607          157 ILILDGLQNLEVLNI  171 (250)
Q Consensus       157 ~~i~~~c~~L~~Ldl  171 (250)
                      ..+...+|+|+.||=
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence            466778899998863

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.77  E-value=2.3e-07  Score=77.02  Aligned_cols=13  Identities=0%  Similarity=0.061  Sum_probs=6.6

Q ss_pred             hcCCCCCEEEecC
Q 025607           87 RMWRDLESLTMPS   99 (250)
Q Consensus        87 ~~c~~L~~L~Ls~   99 (250)
                      .++++|++|++++
T Consensus        77 ~~l~~L~~L~l~~   89 (239)
T 2xwt_C           77 YNLSKVTHIEIRN   89 (239)
T ss_dssp             ESCTTCCEEEEEE
T ss_pred             CCCcCCcEEECCC
Confidence            3445555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.77  E-value=2.2e-05  Score=66.96  Aligned_cols=89  Identities=19%  Similarity=0.238  Sum_probs=63.8

Q ss_pred             HHHHHHhhCCCCcEEEcCCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHH-HHHHHHHhCCCCceeEecCC-CCH---
Q 025607           55 QLTYTAERCPQLKRLVMPAWNRIKK-TGICKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDL---  128 (250)
Q Consensus        55 ~L~~i~~~c~~L~~L~L~~c~~itd-~~l~~~~~~c~~L~~L~Ls~c~~~d~-~l~~i~~~c~~L~~L~L~~~-i~d---  128 (250)
                      .+..+.+.+|+|++|+|++. .++. .++...+..+++|+.|+|++|.+++- .+..+. .. +|++|+|+++ ++.   
T Consensus       161 ~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          161 TLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCS
T ss_pred             HHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccC
Confidence            44455578999999999975 4543 34555678999999999999987654 333332 22 8999999987 542   


Q ss_pred             ---HHHHHHHhcCCCccEEEe
Q 025607          129 ---LFASTLNMYLPKLKVLSL  146 (250)
Q Consensus       129 ---~~~~~i~~~~~~L~~L~L  146 (250)
                         .-...+...+|+|+.||=
T Consensus       238 ~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEESS
T ss_pred             cchhHHHHHHHHCcccCeECC
Confidence               334456668999999873

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.75  E-value=1e-06  Score=72.55  Aligned_cols=111  Identities=18%  Similarity=0.204  Sum_probs=77.3

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      ++|+.|+|++. .++.-. ...+.++++|+.|+|++|.++.-....+ ..+++|++|+++++ ++.-. ..+...+++|+
T Consensus        32 ~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~  107 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITELP-KSLFEGLFSLQ  107 (220)
T ss_dssp             TTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             cCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCccC-HhHccCCCCCC
Confidence            68999999976 444211 1135678999999999997764322222 35799999999988 54211 11224789999


Q ss_pred             EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      .|+|+.|.++.... ..+.++++|++|+++++..-+.
T Consensus       108 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B          108 LLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC
T ss_pred             EEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEE
Confidence            99998888875322 2345789999999999975443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.74  E-value=1.5e-06  Score=84.07  Aligned_cols=107  Identities=21%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607           61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  139 (250)
Q Consensus        61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~  139 (250)
                      ...++|+.|+|+++. ++  .+..-+.++++|++|+|++|.++ .....+ ..+++|+.|+|+++ ++ ..-..+ ..++
T Consensus       221 ~~l~~L~~L~Ls~n~-l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~  293 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ-IF--NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-SLPAEL-GSCF  293 (727)
T ss_dssp             -CCCCCCEEECTTSC-CS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-SCCSSG-GGGT
T ss_pred             ccCCCCcEEECCCCC-CC--CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-ccChhh-cCCC
Confidence            345667777777653 22  12122336677777777777554 111222 34677777777766 44 111112 2567


Q ss_pred             CccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       140 ~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      +|++|+|+.|.++  .+..-+.++++|+.|+|+++..
T Consensus       294 ~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          294 QLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             TCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCcc
Confidence            7777777666665  2222245567777777777754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.71  E-value=1.8e-05  Score=75.30  Aligned_cols=76  Identities=21%  Similarity=0.148  Sum_probs=51.2

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCc
Q 025607           89 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE  167 (250)
Q Consensus        89 c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~  167 (250)
                      .++|+.|++++|.++.     +...+++|+.|+++++ ++.     +...+++|+.|+|++|.++  .+...+.++++|+
T Consensus       220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~  287 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLT--RLPESLIHLSSET  287 (622)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTC
T ss_pred             CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCC--cCCHHHhhccccC
Confidence            3677777777775553     2245678888888776 431     1225678888888777777  3344456788888


Q ss_pred             EEeeeCCCC
Q 025607          168 VLNISHCLL  176 (250)
Q Consensus       168 ~Ldls~C~~  176 (250)
                      .|+++++..
T Consensus       288 ~L~L~~N~l  296 (622)
T 3g06_A          288 TVNLEGNPL  296 (622)
T ss_dssp             EEECCSCCC
T ss_pred             EEEecCCCC
Confidence            888888763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.65  E-value=7.3e-07  Score=77.28  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=17.4

Q ss_pred             HhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC
Q 025607           86 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  125 (250)
Q Consensus        86 ~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~  125 (250)
                      +.++++|++|++++|.++......+....++|++|+++++
T Consensus       145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence            3445555555555554432222222222125555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.62  E-value=8.6e-07  Score=82.82  Aligned_cols=109  Identities=16%  Similarity=0.099  Sum_probs=48.7

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .++|+.|+|+++...+ ......+..+++|+.|+|++|.++.-....+ ..+++|++|+|+++ ++.-....+ ..+++|
T Consensus       468 ~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~~-~~l~~L  544 (635)
T 4g8a_A          468 LSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPY-KCLNSL  544 (635)
T ss_dssp             CTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCBCCCGGG-TTCTTC
T ss_pred             chhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCccCCcChHHH-cCCCCCCEEECCCCcCCCCChhHH-hCCCCC
Confidence            4455555555442111 0011123455666666666664432211111 24566666666655 321111111 245666


Q ss_pred             cEEEeecCCCCHHHHHHHHhcC-CCCcEEeeeCCC
Q 025607          142 KVLSLRCTTLNRDALILILDGL-QNLEVLNISHCL  175 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c-~~L~~Ldls~C~  175 (250)
                      +.|+|+.|.++...-.. +.+. ++|++|++++++
T Consensus       545 ~~L~Ls~N~l~~~~~~~-l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          545 QVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CEEECTTSCCCBCCSSC-TTCCCTTCCEEECTTCC
T ss_pred             CEEECCCCcCCCCCHHH-HHhhhCcCCEEEeeCCC
Confidence            66666555555322111 1233 456666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.59  E-value=1.7e-06  Score=76.37  Aligned_cols=110  Identities=15%  Similarity=0.066  Sum_probs=75.9

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHh-cCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIR-MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~-~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      ++++.|+|++. .++.-.- ..+. ++++|+.|+|++|.++.-....+ ..+++|++|+|+++ ++.-....+ ..+++|
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L  114 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNHLHTLDEFLF-SDLQAL  114 (361)
T ss_dssp             TTCSEEECCSS-CCCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTT-TTCTTC
T ss_pred             CCCCEEECCCC-CCCccCh-hhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCcCCcCCHHHh-CCCcCC
Confidence            46999999976 4543211 1233 78999999999997754222222 35799999999988 442111112 378999


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +.|+|+.|.++.-.- ..+.++++|++|+++++..-+
T Consensus       115 ~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          115 EVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             CEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCS
T ss_pred             CEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCe
Confidence            999999898875321 224678999999999986544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.46  E-value=1.6e-05  Score=74.93  Aligned_cols=9  Identities=11%  Similarity=0.113  Sum_probs=4.4

Q ss_pred             CccEEEecC
Q 025607           39 SIRTLIFHF   47 (250)
Q Consensus        39 ~l~~L~l~~   47 (250)
                      +++.|++++
T Consensus        60 ~L~~L~Ls~   68 (571)
T 3cvr_A           60 QFSELQLNR   68 (571)
T ss_dssp             TCSEEECCS
T ss_pred             CccEEEeCC
Confidence            455555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.45  E-value=6.6e-06  Score=64.93  Aligned_cols=109  Identities=13%  Similarity=0.070  Sum_probs=71.5

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      +.++.|.++++. ++. ........+++|++|+|+++ .++.- ....+..+++|+.|++++|.++.-.. .....+++|
T Consensus        28 ~~l~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESNK-LQS-LPHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSSC-CCC-CCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCCcEEEeCCCc-ccE-eCHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCCccccCH-HHhhCCccc
Confidence            578888887754 321 11112246789999999976 44421 11234688999999999997653211 122457999


Q ss_pred             ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCC
Q 025607          118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN  152 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~it  152 (250)
                      ++|+++++ ++.-. ..+...+++|++|++.+|.++
T Consensus       103 ~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          103 KELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             CEEECcCCcceEeC-HHHhcCCcccCEEEecCCCee
Confidence            99999987 44211 122246899999999888766

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.34  E-value=9.7e-05  Score=70.21  Aligned_cols=14  Identities=29%  Similarity=0.280  Sum_probs=7.5

Q ss_pred             CCccEEEeecCCCC
Q 025607          139 PKLKVLSLRCTTLN  152 (250)
Q Consensus       139 ~~L~~L~L~~~~it  152 (250)
                      ++|+.|++++|.++
T Consensus       181 ~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          181 SGLQELSVSDNQLA  194 (622)
T ss_dssp             TTCCEEECCSSCCS
T ss_pred             CCCcEEECCCCCCC
Confidence            55555555545444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.31  E-value=4.9e-05  Score=69.37  Aligned_cols=16  Identities=6%  Similarity=0.011  Sum_probs=7.8

Q ss_pred             HhcCCCCCEEEecCCC
Q 025607           86 IRMWRDLESLTMPSIA  101 (250)
Q Consensus        86 ~~~c~~L~~L~Ls~c~  101 (250)
                      +.++++|++|++++|.
T Consensus       149 ~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             CTTCTTCCEEECCSSC
T ss_pred             cCCCCCCCEEECCCCc
Confidence            3444555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.31  E-value=4.3e-05  Score=71.96  Aligned_cols=81  Identities=11%  Similarity=0.052  Sum_probs=36.4

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHH--HHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC
Q 025607           89 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLL--FASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN  165 (250)
Q Consensus        89 c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~--~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~  165 (250)
                      +++|+.|++++|.++.  +..+.   ++|+.|+++++ ++.-  ....+....+.|+.|+|++|.++.  +..-+..+++
T Consensus       159 l~~L~~L~Ls~N~L~~--lp~l~---~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~  231 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTF--LPELP---ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH--IPENILSLDP  231 (571)
T ss_dssp             CTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC--CCGGGGGSCT
T ss_pred             CCCcCEEECCCCCCCC--cchhh---CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee--cCHHHhcCCC
Confidence            4555555555554332  11111   56666666555 3210  000111112223666666666662  2222334677


Q ss_pred             CcEEeeeCCCC
Q 025607          166 LEVLNISHCLL  176 (250)
Q Consensus       166 L~~Ldls~C~~  176 (250)
                      |+.|+++++..
T Consensus       232 L~~L~L~~N~l  242 (571)
T 3cvr_A          232 TCTIILEDNPL  242 (571)
T ss_dssp             TEEEECCSSSC
T ss_pred             CCEEEeeCCcC
Confidence            77777777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.30  E-value=1e-05  Score=70.29  Aligned_cols=109  Identities=12%  Similarity=0.070  Sum_probs=72.0

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      ++|+.|+++++ .++.... ..+.++++|+.|++++|.++......+ ..+++|++|+++++ ++. ....+ ..+++|+
T Consensus       193 ~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~-lp~~l-~~l~~L~  267 (332)
T 2ft3_A          193 ETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSR-VPAGL-PDLKLLQ  267 (332)
T ss_dssp             SSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCCB-CCTTG-GGCTTCC
T ss_pred             CCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCee-cChhh-hcCccCC
Confidence            68999999876 3432211 235678899999999986654222222 45789999999887 541 11112 3788999


Q ss_pred             EEEeecCCCCHHHHHHHHhc-----CCCCcEEeeeCCCCc
Q 025607          143 VLSLRCTTLNRDALILILDG-----LQNLEVLNISHCLLI  177 (250)
Q Consensus       143 ~L~L~~~~itd~~l~~i~~~-----c~~L~~Ldls~C~~i  177 (250)
                      .|+++.+.++..+...+...     .+.|+.|++++++..
T Consensus       268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             EEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            99998888886544433221     467889999988754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.30  E-value=5e-06  Score=68.79  Aligned_cols=108  Identities=15%  Similarity=0.148  Sum_probs=71.1

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHhCCCCceeEecC-C-CCHHHHHHHHhcCCC
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA-NPPYLMEEIAQNCRNFRELKIMG-P-FDLLFASTLNMYLPK  140 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~-~~d~~l~~i~~~c~~L~~L~L~~-~-i~d~~~~~i~~~~~~  140 (250)
                      ++|+.|+|+++ .++.-. ...+.++++|+.|++++|. ++.-... ....+++|++|++++ . ++.-....+ ..+++
T Consensus        31 ~~l~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDAL-KELPL  106 (239)
T ss_dssp             TTCCEEEEESC-CCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSE-ECCTT
T ss_pred             CcccEEEEeCC-cceEEC-HHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHh-CCCCC
Confidence            47999999976 344211 1135679999999999995 6532111 124689999999987 4 442111112 36889


Q ss_pred             ccEEEeecCCCCHHHHHHHHhcCCCCc---EEeeeCCCCcC
Q 025607          141 LKVLSLRCTTLNRDALILILDGLQNLE---VLNISHCLLID  178 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~~i~~~c~~L~---~Ldls~C~~i~  178 (250)
                      |++|++.++.++.  +.. ...+++|+   +|+++++..++
T Consensus       107 L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C          107 LKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             CCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred             CCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchh
Confidence            9999997777765  333 45677777   88888884443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.21  E-value=3.1e-05  Score=74.85  Aligned_cols=107  Identities=14%  Similarity=0.147  Sum_probs=76.1

Q ss_pred             cCCCccEEEecCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHh
Q 025607           36 SRGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQN  113 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i--~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~  113 (250)
                      ....|+.|+++.+...  ...    +. .+++|++|+|+++ .++  .+...+.++++|+.|+|++|.++ .....+ ..
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~~~----~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~  291 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNISAN----IF-KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-GS  291 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCCGG----GG-GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-GG
T ss_pred             cCCCCcEEECCCCCCCCCChh----hc-CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhh-cC
Confidence            3567889999876532  222    22 6899999999976 555  34444678999999999999776 222223 45


Q ss_pred             CCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHH
Q 025607          114 CRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRD  154 (250)
Q Consensus       114 c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~  154 (250)
                      +++|+.|+|+++ ++. .-..+ ..+++|+.|+|++|.++..
T Consensus       292 l~~L~~L~L~~N~l~~-lp~~~-~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTT-LPWEF-GNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             GTTCSEEECCSSCCCC-CCSST-TSCTTCCCEECTTSCCCSH
T ss_pred             CCCCCEEECCCCCCCc-cChhh-hcCCCccEEeCCCCccCCC
Confidence            799999999988 541 11123 3789999999999998843

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.20  E-value=9.9e-05  Score=67.31  Aligned_cols=33  Identities=15%  Similarity=0.007  Sum_probs=15.5

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAW   74 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c   74 (250)
                      +.++.|+++++. ++.  +.. ...+++|++|+++++
T Consensus       131 ~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A          131 PLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCCC
Confidence            456666665542 221  111 234555666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.14  E-value=3.1e-05  Score=61.32  Aligned_cols=85  Identities=14%  Similarity=0.042  Sum_probs=49.1

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV  168 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~  168 (250)
                      ++|+.|+|+++.++.-.... ...+++|+.|+|+++ ++.-. ..+...+++|+.|+|+.|.++.-. ...+.++++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCccccCHHH-hcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeC-HHHhccccCCCE
Confidence            56677777766543211111 124567777777665 33210 011236788888888777777311 122456788999


Q ss_pred             EeeeCCCCc
Q 025607          169 LNISHCLLI  177 (250)
Q Consensus       169 Ldls~C~~i  177 (250)
                      |+++++...
T Consensus       110 L~L~~N~~~  118 (174)
T 2r9u_A          110 IYLYNNPWD  118 (174)
T ss_dssp             EECCSSCBC
T ss_pred             EEeCCCCcc
Confidence            998887644

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.12  E-value=4.7e-05  Score=61.27  Aligned_cols=85  Identities=16%  Similarity=0.191  Sum_probs=61.3

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV  168 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~  168 (250)
                      ++|++|+++++.++.  +......+++|+.|+++++ ++.-...++ ..+++|++|+|+.|.++.-.-. .+.++++|++
T Consensus        31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~  106 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRL  106 (193)
T ss_dssp             TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCE
T ss_pred             CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCHH-HhCCCCCCCE
Confidence            689999999997652  1123356899999999988 543222223 3789999999988888753221 2457899999


Q ss_pred             EeeeCCCCcC
Q 025607          169 LNISHCLLID  178 (250)
Q Consensus       169 Ldls~C~~i~  178 (250)
                      |+++++..-+
T Consensus       107 L~L~~N~l~~  116 (193)
T 2wfh_A          107 LSLHGNDISV  116 (193)
T ss_dssp             EECCSSCCCB
T ss_pred             EECCCCCCCe
Confidence            9999987544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.01  E-value=4.8e-05  Score=59.90  Aligned_cols=84  Identities=15%  Similarity=0.060  Sum_probs=46.4

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV  168 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~  168 (250)
                      ++|+.|+|++|.++.-....+ ..+++|++|+++++ ++.-.. .+...+++|++|+|+.|.++.-. ...+.++++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVF-DRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccChhhh-cCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCE
Confidence            566666666664432111111 23566777777665 331110 11136778888888777766311 123456788888


Q ss_pred             EeeeCCCC
Q 025607          169 LNISHCLL  176 (250)
Q Consensus       169 Ldls~C~~  176 (250)
                      |++++..-
T Consensus       107 L~L~~N~~  114 (170)
T 3g39_A          107 IWLLNNPW  114 (170)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCC
Confidence            88888754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.99  E-value=2.9e-05  Score=62.29  Aligned_cols=87  Identities=10%  Similarity=0.072  Sum_probs=61.7

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV  168 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~  168 (250)
                      ++|++|+++++.++.-.........++|++|+++++ ++.-...++. .+++|++|+|+.+.++...- ..+.++++|++
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~  106 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISN-KMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence            489999999997653222222356899999999988 5432222233 78999999999898885322 12456899999


Q ss_pred             EeeeCCCCcC
Q 025607          169 LNISHCLLID  178 (250)
Q Consensus       169 Ldls~C~~i~  178 (250)
                      |+++++..-+
T Consensus       107 L~L~~N~l~~  116 (192)
T 1w8a_A          107 LNLYDNQISC  116 (192)
T ss_dssp             EECCSSCCCE
T ss_pred             EECCCCcCCe
Confidence            9999996543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.96  E-value=0.00013  Score=63.25  Aligned_cols=46  Identities=13%  Similarity=0.186  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHhhCCCCcEEEcCCC--CCCCHHHHHHHHhcCCCCCEEEecCC
Q 025607           51 VSDDQLTYTAERCPQLKRLVMPAW--NRIKKTGICKAIRMWRDLESLTMPSI  100 (250)
Q Consensus        51 i~d~~L~~i~~~c~~L~~L~L~~c--~~itd~~l~~~~~~c~~L~~L~Ls~c  100 (250)
                      +....+..+...|++|+.|+|+++  ..+.+    ..+.+|++|++|+++.+
T Consensus       213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          213 LDNADFKLIRDYMPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT
T ss_pred             ecHHHHHHHHHhcCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc
Confidence            334444444444555555555542  11211    12345555555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.83  E-value=0.00014  Score=57.24  Aligned_cols=86  Identities=10%  Similarity=0.004  Sum_probs=58.7

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .++|+.|+|++. .++.-. ...+.++++|+.|+|++|.++.-. ..+...+++|++|+++++ ++.-.. .....+++|
T Consensus        29 ~~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L  104 (170)
T 3g39_A           29 PTTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSL  104 (170)
T ss_dssp             CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCH-HHhcCCCCC
Confidence            378999999976 443210 123568899999999999765211 122246799999999987 442111 112378999


Q ss_pred             cEEEeecCCCC
Q 025607          142 KVLSLRCTTLN  152 (250)
Q Consensus       142 ~~L~L~~~~it  152 (250)
                      +.|+|.+|.++
T Consensus       105 ~~L~L~~N~~~  115 (170)
T 3g39_A          105 THIWLLNNPWD  115 (170)
T ss_dssp             CEEECCSSCBC
T ss_pred             CEEEeCCCCCC
Confidence            99999888776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.79  E-value=0.00016  Score=57.13  Aligned_cols=85  Identities=13%  Similarity=0.052  Sum_probs=58.3

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      ++|+.|+|++. .++.- ....+.++++|+.|+|++|.++.-. ..+...+++|+.|+++++ ++.-.. .....+++|+
T Consensus        33 ~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~  108 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKL-EPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLT  108 (174)
T ss_dssp             TTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCS
T ss_pred             CCCcEEEeCCC-Ccccc-CHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCH-HHhccccCCC
Confidence            78999999976 34321 1234678899999999999765311 112246799999999987 442111 1123689999


Q ss_pred             EEEeecCCCC
Q 025607          143 VLSLRCTTLN  152 (250)
Q Consensus       143 ~L~L~~~~it  152 (250)
                      .|+|.+|.++
T Consensus       109 ~L~L~~N~~~  118 (174)
T 2r9u_A          109 HIYLYNNPWD  118 (174)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEeCCCCcc
Confidence            9999888776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.40  E-value=0.00023  Score=61.92  Aligned_cols=62  Identities=11%  Similarity=0.081  Sum_probs=30.7

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  125 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~  125 (250)
                      ..++|+.|+|++.+.++.-. ...+.++++|+.|+|++|.++.-.... ...+++|+.|+|+++
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDA-FHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTG-GGSCSCCCEEECCSS
T ss_pred             CCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCccceeCHHH-hcCCcCCCEEeCCCC
Confidence            34556677776534443210 012445666666666666544211111 123566666666555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.53  E-value=0.0012  Score=57.36  Aligned_cols=104  Identities=16%  Similarity=0.204  Sum_probs=61.3

Q ss_pred             EEEcCCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEE
Q 025607           68 RLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-IANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLS  145 (250)
Q Consensus        68 ~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~-c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~  145 (250)
                      .++.++.+.++.  +.. +..+++|++|+|++ +.++.-.... ...+++|+.|+|+++ ++.-....+ ..+++|++|+
T Consensus        12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~   86 (347)
T 2ifg_A           12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLN   86 (347)
T ss_dssp             CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSCCCEECTTGG-GSCSCCCEEE
T ss_pred             EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCCccceeCHHHh-cCCcCCCEEe
Confidence            344443323432  334 66777899999986 6654321111 235788999999887 432111122 3788999999


Q ss_pred             eecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          146 LRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       146 L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      |+.|.++.-. ..+....+ |+.|+++++....
T Consensus        87 l~~N~l~~~~-~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALESLS-WKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSCCC-STTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCCccceeC-HHHcccCC-ceEEEeeCCCccC
Confidence            9888877311 11222333 8999998876543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.51  E-value=0.0015  Score=56.38  Aligned_cols=99  Identities=11%  Similarity=0.108  Sum_probs=62.4

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC---HHHHHHHHHhCCCCceeEecCC---CCHHHHHHHHhcC
Q 025607           65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP---PYLMEEIAQNCRNFRELKIMGP---FDLLFASTLNMYL  138 (250)
Q Consensus        65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~---d~~l~~i~~~c~~L~~L~L~~~---i~d~~~~~i~~~~  138 (250)
                      +++.+.+.+  .+....+..+...|++|++|+|+++.++   +.++    ..|++|++|.++..   +.+...    ..|
T Consensus       203 ~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF----~~~~~L~~l~l~~ni~~I~~~aF----~~~  272 (329)
T 3sb4_A          203 DINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF----AQKKYLLKIKLPHNLKTIGQRVF----SNC  272 (329)
T ss_dssp             GCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT----TTCTTCCEEECCTTCCEECTTTT----TTC
T ss_pred             ccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh----hCCCCCCEEECCcccceehHHHh----hCC
Confidence            344555543  3556666666667899999999887443   3322    46888999998765   333221    378


Q ss_pred             CCcc-EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          139 PKLK-VLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       139 ~~L~-~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      ++|+ .+++.. .++.-+- ....+|++|+.|++++..
T Consensus       273 ~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          273 GRLAGTLELPA-SVTAIEF-GAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             TTCCEEEEECT-TCCEECT-TTTTTCTTEEEEEECSSC
T ss_pred             hhccEEEEEcc-cceEEch-hhhhCCccCCEEEeCCCc
Confidence            8898 888844 3332111 124578999999886553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=94.51  E-value=0.00046  Score=60.37  Aligned_cols=15  Identities=20%  Similarity=0.313  Sum_probs=7.9

Q ss_pred             hcCCCCCEEEecCCC
Q 025607           87 RMWRDLESLTMPSIA  101 (250)
Q Consensus        87 ~~c~~L~~L~Ls~c~  101 (250)
                      .++++|++|+|++|.
T Consensus        51 ~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X           51 SGFGDLEKIEISQND   65 (350)
T ss_dssp             TTCTTCCEEEEECCT
T ss_pred             cCCCCCCEEECcCCC
Confidence            445555555555553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.51  E-value=0.0043  Score=55.57  Aligned_cols=13  Identities=23%  Similarity=0.424  Sum_probs=7.1

Q ss_pred             cCCCccEEEeecC
Q 025607          137 YLPKLKVLSLRCT  149 (250)
Q Consensus       137 ~~~~L~~L~L~~~  149 (250)
                      .|++|+.+.+..+
T Consensus       269 ~c~~L~~l~l~~~  281 (401)
T 4fdw_A          269 YCPELAEVTTYGS  281 (401)
T ss_dssp             TCTTCCEEEEESS
T ss_pred             CCCCCCEEEeCCc
Confidence            4556666666433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.79  E-value=0.017  Score=51.10  Aligned_cols=13  Identities=23%  Similarity=0.347  Sum_probs=6.3

Q ss_pred             hcCCCCCEEEecC
Q 025607           87 RMWRDLESLTMPS   99 (250)
Q Consensus        87 ~~c~~L~~L~Ls~   99 (250)
                      .+|.+|+++.|..
T Consensus       308 ~~c~~L~~i~lp~  320 (394)
T 4gt6_A          308 AGCISLKSIDIPE  320 (394)
T ss_dssp             TTCTTCCEEECCT
T ss_pred             cCCCCcCEEEeCC
Confidence            3455555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=92.62  E-value=0.0048  Score=53.75  Aligned_cols=86  Identities=16%  Similarity=0.123  Sum_probs=51.6

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCc
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLE  167 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~  167 (250)
                      +++++|+|+++.++.-. ...-..+++|++|+|+++ +....-......+++|+++.+ .++.++.-. .....++++|+
T Consensus        30 ~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccccc
Confidence            57999999998765211 111246799999999887 321100011125677766544 777766321 11235678888


Q ss_pred             EEeeeCCCCc
Q 025607          168 VLNISHCLLI  177 (250)
Q Consensus       168 ~Ldls~C~~i  177 (250)
                      +|+++++...
T Consensus       108 ~L~l~~n~l~  117 (350)
T 4ay9_X          108 YLLISNTGIK  117 (350)
T ss_dssp             EEEEEEECCS
T ss_pred             cccccccccc
Confidence            8888887543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.10  E-value=0.067  Score=47.16  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=65.2

Q ss_pred             hhCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEecCC--CCCHHHHHHHHHhCCCCceeEecCC---CCHHHHHHH
Q 025607           61 ERCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGP---FDLLFASTL  134 (250)
Q Consensus        61 ~~c~~L~~L~L~~c-~~itd~~l~~~~~~c~~L~~L~Ls~c--~~~d~~l~~i~~~c~~L~~L~L~~~---i~d~~~~~i  134 (250)
                      ..|++|+.+.++.. ..+..    ..+.+|+.|+.+.+...  .+.+.++    ..|++|+++.+...   +.+...   
T Consensus       262 ~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~aF---  330 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPESVF----AGCISLKSIDIPEGITQILDDAF---  330 (394)
T ss_dssp             TTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTTT---
T ss_pred             eecccccEEecccccceecC----cccccccccccccCCCcccccCceee----cCCCCcCEEEeCCcccEehHhHh---
Confidence            46788888888643 12222    23567899999998754  3344333    46899999999765   444322   


Q ss_pred             HhcCCCccEEEeec--CCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607          135 NMYLPKLKVLSLRC--TTLNRDALILILDGLQNLEVLNISHC  174 (250)
Q Consensus       135 ~~~~~~L~~L~L~~--~~itd~~l~~i~~~c~~L~~Ldls~C  174 (250)
                       ..|.+|+++.|..  ..|.+.+    ..+|++|+.+++.+.
T Consensus       331 -~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          331 -AGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGS  367 (394)
T ss_dssp             -TTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSC
T ss_pred             -hCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCc
Confidence             3789999999932  3354433    468999999998764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=90.78  E-value=0.024  Score=35.31  Aligned_cols=40  Identities=13%  Similarity=0.086  Sum_probs=28.2

Q ss_pred             CCCCCcC----CcceeeecCCCchHHHHHHHHHHH--hcCCCccEE
Q 025607            4 SNYIKIP----LEPYVYVHGHSDKQLTRILKISLS--LSRGSIRTL   43 (250)
Q Consensus         4 ~~~~~~p----l~if~~l~~~~~~~l~~v~~~~~~--~~~~~l~~L   43 (250)
                      ..+..+|    .+||+|++..++.+++.|||.+..  .+...|+.+
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            4567788    899999999999999999998433  344445543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=85.99  E-value=0.15  Score=45.44  Aligned_cols=126  Identities=10%  Similarity=0.108  Sum_probs=76.1

Q ss_pred             CCCccEEEecCC-CCCCHHHHHHHHhhCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH----HHH
Q 025607           37 RGSIRTLIFHFN-LYVSDDQLTYTAERCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSIANPPYLM----EEI  110 (250)
Q Consensus        37 ~~~l~~L~l~~~-~~i~d~~L~~i~~~c~~L~~L~L~~c-~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l----~~i  110 (250)
                      +..|+.+.++.. ..+.+..+     ...+|+.+.|+.. ..+.+    ..+.+|++|+.+.+.++.+.....    ...
T Consensus       225 ~~~L~~l~l~~~l~~I~~~aF-----~~~~L~~i~lp~~i~~I~~----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a  295 (401)
T 4fdw_A          225 TSQLKTIEIPENVSTIGQEAF-----RESGITTVKLPNGVTNIAS----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYC  295 (401)
T ss_dssp             CTTCCCEECCTTCCEECTTTT-----TTCCCSEEEEETTCCEECT----TTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred             CCCCCEEecCCCccCcccccc-----ccCCccEEEeCCCccEECh----hHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence            456666666431 12233333     2268999999642 22332    246789999999998873321111    112


Q ss_pred             HHhCCCCceeEecCC---CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          111 AQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       111 ~~~c~~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      -..|++|+.+.+...   +.+...    ..|++|+.+.|..+ ++.-+-. ...+| +|+.|++++...-+
T Consensus       296 F~~c~~L~~l~l~~~i~~I~~~aF----~~c~~L~~l~lp~~-l~~I~~~-aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          296 LEGCPKLARFEIPESIRILGQGLL----GGNRKVTQLTIPAN-VTQINFS-AFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TTTCTTCCEECCCTTCCEECTTTT----TTCCSCCEEEECTT-CCEECTT-SSSSS-CCCEEEECCSSCCB
T ss_pred             hhCCccCCeEEeCCceEEEhhhhh----cCCCCccEEEECcc-ccEEcHH-hCCCC-CCCEEEEcCCCCcc
Confidence            257999999999765   333322    37899999999332 3321111 23578 99999999886544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.83
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.36
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.96
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.34
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.26
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.18
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.17
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.1
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.04
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.03
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.0
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.92
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.51
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.41
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.38
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.28
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.2
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.11
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.04
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.04
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.08
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	94.51
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.37
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	93.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	92.26

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.9e-20  Score=158.10  Aligned_cols=146  Identities=18%  Similarity=0.190  Sum_probs=124.4

Q ss_pred             HHHhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHH-
Q 025607           32 SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEE-  109 (250)
Q Consensus        32 ~~~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~-  109 (250)
                      .+...+++++.|.+.++ .+++..+..++ ++|+|++|+|++|..+|+.++..++.+||+|++|++++| .+++..+.. 
T Consensus        65 ~l~~~c~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~  142 (284)
T d2astb2          65 GILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  142 (284)
T ss_dssp             HHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHHHhCCCccccccccc-CCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhh
Confidence            34456789999999877 58899998887 589999999999999999999999999999999999998 788887754 


Q ss_pred             HHHhCCCCceeEecCC---CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCC
Q 025607          110 IAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLIDVP  180 (250)
Q Consensus       110 i~~~c~~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~  180 (250)
                      ++..|++|++|+++++   +++.++..++.+||+|++|++ .|..+|++++..+. .||+|++|++++|.++++.
T Consensus       143 ~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGG
T ss_pred             hcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChH
Confidence            5667789999999886   889999999889999999999 56789998887765 6899999999999988763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=161.60  Aligned_cols=140  Identities=15%  Similarity=0.189  Sum_probs=126.9

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH-hcCCCCCEEEecCC--CCCHHHHHHHHH
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI-RMWRDLESLTMPSI--ANPPYLMEEIAQ  112 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~-~~c~~L~~L~Ls~c--~~~d~~l~~i~~  112 (250)
                      ..++++.|+++++..++|+.+..++..||+|++|++++|..+++.++..++ ..+++|++|++++|  .+++..+..++.
T Consensus        93 ~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~  172 (284)
T d2astb2          93 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  172 (284)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccc
Confidence            367899999999999999999999999999999999999999999987655 45689999999987  689999999999


Q ss_pred             hCCCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          113 NCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       113 ~c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      +||+|++|++++|  ++|+++..++ .+|+|++|++ +|..++++++..+ ..+|+|++|++++|  +++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~--~~d  238 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI--VPD  238 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS--SCT
T ss_pred             ccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC--CCH
Confidence            9999999999987  8999888887 6999999999 7789999998886 46999999999999  454

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.42  E-value=7.5e-12  Score=97.56  Aligned_cols=123  Identities=10%  Similarity=0.060  Sum_probs=104.2

Q ss_pred             HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHHH---HhCCCCceeEecCC-
Q 025607           53 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI---RMWRDLESLTMPSIANPPYLMEEIA---QNCRNFRELKIMGP-  125 (250)
Q Consensus        53 d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~---~~c~~L~~L~Ls~c~~~d~~l~~i~---~~c~~L~~L~L~~~-  125 (250)
                      ++.+..+....|+|++|+|++...+++.++..++   ..+++|++|++++|.+++++..+++   +..+.++.++++++ 
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            5678888889999999999988889999876655   5789999999999999999888775   45799999999998 


Q ss_pred             CCHHHHHHHHh---cCCCccEEEe--ecCCCCHHHHHHHH---hcCCCCcEEeeeCCC
Q 025607          126 FDLLFASTLNM---YLPKLKVLSL--RCTTLNRDALILIL---DGLQNLEVLNISHCL  175 (250)
Q Consensus       126 i~d~~~~~i~~---~~~~L~~L~L--~~~~itd~~l~~i~---~~c~~L~~Ldls~C~  175 (250)
                      ++++++..+++   ..++|+.++|  ..+.++++|..+++   +.+++|+.|++++..
T Consensus        86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          86 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            99999888875   4678998888  56789999866665   479999999998653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=115.57  Aligned_cols=122  Identities=17%  Similarity=0.139  Sum_probs=100.3

Q ss_pred             CccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHHHh--
Q 025607           39 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLMEEIAQN--  113 (250)
Q Consensus        39 ~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~---~~~c~~L~~L~Ls~c~~~d~~l~~i~~~--  113 (250)
                      .++.|++++ ..++|..+..+...++++++|+|++| .++++++..+   ++.+++|++|+|++|.+++.++..++..  
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            577888875 57899888888888999999999988 5888876554   5789999999999999999888888764  


Q ss_pred             --CCCCceeEecCC-CCHHHHHHHHh---cCCCccEEEeecCCCCHHHHHHHHhc
Q 025607          114 --CRNFRELKIMGP-FDLLFASTLNM---YLPKLKVLSLRCTTLNRDALILILDG  162 (250)
Q Consensus       114 --c~~L~~L~L~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~itd~~l~~i~~~  162 (250)
                        .++|++|+++++ +++.++..+++   .+++|++|++.++.+++.++..+...
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~  135 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG  135 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhc
Confidence              357999999988 88877766654   57899999998899999888877654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.35  E-value=1.4e-11  Score=96.27  Aligned_cols=123  Identities=12%  Similarity=0.119  Sum_probs=101.7

Q ss_pred             HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHH---HhCCCCceeEecCC-
Q 025607           53 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLMEEIA---QNCRNFRELKIMGP-  125 (250)
Q Consensus        53 d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~---~~~c~~L~~L~Ls~c~~~d~~l~~i~---~~c~~L~~L~L~~~-  125 (250)
                      ++.+..+...+|+|+.|+|+++..++++++..+   +...+.|++|+|++|.+++.+..+++   +.++.|++|+++++ 
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            467888988999999999998888999987665   55778899999999999998877765   45799999999999 


Q ss_pred             CCHHHHHHHHhc---CCCccEEEeecC---CCCHHHHHHH---HhcCCCCcEEeeeCCC
Q 025607          126 FDLLFASTLNMY---LPKLKVLSLRCT---TLNRDALILI---LDGLQNLEVLNISHCL  175 (250)
Q Consensus       126 i~d~~~~~i~~~---~~~L~~L~L~~~---~itd~~l~~i---~~~c~~L~~Ldls~C~  175 (250)
                      ++++++..+++.   .+.|++|++.++   .+++++..++   +...+.|+.|++++..
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            999999888764   467999999554   5777775444   5668999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.34  E-value=2.7e-11  Score=104.44  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=84.0

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHH---hhCCCCcEEEcCCCCCCCHHHHHHH----HhcCCCCCEEEecCCCCCHHHHH
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTA---ERCPQLKRLVMPAWNRIKKTGICKA----IRMWRDLESLTMPSIANPPYLME  108 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~---~~c~~L~~L~L~~c~~itd~~l~~~----~~~c~~L~~L~Ls~c~~~d~~l~  108 (250)
                      ..+.++.+.++.+ .++++.+..++   ..++.|+.|+|++| .++++++..+    +..+++|+.|++++|.+++.+..
T Consensus       156 ~~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  233 (344)
T d2ca6a1         156 NAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS  233 (344)
T ss_dssp             TCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred             cCcccceeecccc-cccccccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccccccccccc
Confidence            3455555555543 34544444332   34666777777665 5666654432    34567777777777766666555


Q ss_pred             HHH---HhCCCCceeEecCC-CCHHHHHHHHhc-----CCCccEEEeecCCCCHHHHHHHHh----cCCCCcEEeeeCCC
Q 025607          109 EIA---QNCRNFRELKIMGP-FDLLFASTLNMY-----LPKLKVLSLRCTTLNRDALILILD----GLQNLEVLNISHCL  175 (250)
Q Consensus       109 ~i~---~~c~~L~~L~L~~~-i~d~~~~~i~~~-----~~~L~~L~L~~~~itd~~l~~i~~----~c~~L~~Ldls~C~  175 (250)
                      .++   ..+++|++|++++| +++.++..+++.     .+.|++|++++|.|+++|+..+.+    .+++|++|+++++.
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            544   45677777777777 777766666532     346777777667777776555543    45677777777655


Q ss_pred             C
Q 025607          176 L  176 (250)
Q Consensus       176 ~  176 (250)
                      .
T Consensus       314 ~  314 (344)
T d2ca6a1         314 F  314 (344)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.1e-11  Score=107.18  Aligned_cols=110  Identities=14%  Similarity=0.153  Sum_probs=58.9

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH---HhCCCCceeEecCC-CCHHHHHHHHhcC--
Q 025607           65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA---QNCRNFRELKIMGP-FDLLFASTLNMYL--  138 (250)
Q Consensus        65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~---~~c~~L~~L~L~~~-i~d~~~~~i~~~~--  138 (250)
                      +|+.|+++ |.++++.++..+++.+++|+.|+|++|.+++..+..|+   +.+|+|++|+|+++ +++.++..+++.+  
T Consensus         3 ~l~~ld~~-~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEee-CCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            45555554 55555555555555555555555555555555554444   44555555555555 5555555555432  


Q ss_pred             --CCccEEEeecCCCCHHHHHHHH---hcCCCCcEEeeeCCC
Q 025607          139 --PKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNISHCL  175 (250)
Q Consensus       139 --~~L~~L~L~~~~itd~~l~~i~---~~c~~L~~Ldls~C~  175 (250)
                        ++|++|+|+.+.+|+.++..+.   ..+++|++|+++++.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence              2455555555555555544433   235555555555553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.21  E-value=1.3e-10  Score=100.18  Aligned_cols=114  Identities=21%  Similarity=0.305  Sum_probs=76.3

Q ss_pred             CCCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEecCCCCCHHHHHHH----HHhCCCCceeEecCC-CCHHHHHHH
Q 025607           63 CPQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEEI----AQNCRNFRELKIMGP-FDLLFASTL  134 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~---l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i----~~~c~~L~~L~L~~~-i~d~~~~~i  134 (250)
                      .+.|+.+.+++. .+++.+   +...+..++.|++|++++|.++++++..+    ...+++|++|+++++ +++.++.++
T Consensus       157 ~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         157 APPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             Ccccceeecccc-cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            445555555432 444443   33335567788888888887777654432    345788888888877 777776666


Q ss_pred             H---hcCCCccEEEeecCCCCHHHHHHHHhc-----CCCCcEEeeeCCCCcC
Q 025607          135 N---MYLPKLKVLSLRCTTLNRDALILILDG-----LQNLEVLNISHCLLID  178 (250)
Q Consensus       135 ~---~~~~~L~~L~L~~~~itd~~l~~i~~~-----c~~L~~Ldls~C~~i~  178 (250)
                      +   +.+++|++|+|++|.+++.|+..++..     .+.|++||++++. ++
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~  286 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IE  286 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CB
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CC
Confidence            5   467788888888788888887777643     3568888888875 44

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.00  E-value=1.2e-08  Score=78.76  Aligned_cols=118  Identities=13%  Similarity=0.057  Sum_probs=97.2

Q ss_pred             HhcCCCccEEEecCCCCCCHHHHHHHHh---hCCCCcEEEcCCCCCCCHHHHHH---HHhcCCCCCEEEecCCCCCHHHH
Q 025607           34 SLSRGSIRTLIFHFNLYVSDDQLTYTAE---RCPQLKRLVMPAWNRIKKTGICK---AIRMWRDLESLTMPSIANPPYLM  107 (250)
Q Consensus        34 ~~~~~~l~~L~l~~~~~i~d~~L~~i~~---~c~~L~~L~L~~c~~itd~~l~~---~~~~c~~L~~L~Ls~c~~~d~~l  107 (250)
                      ....+.++.|.+++...++++.+..++.   .+++|++|+|++| .+++++...   .++..+.|+.+++++|.++++++
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            3457899999999878899999998886   5788999999988 888887555   46778999999999999999998


Q ss_pred             HHHH---HhCCCCceeEecC--C-CCHHHHHHHHh---cCCCccEEEeecCCCC
Q 025607          108 EEIA---QNCRNFRELKIMG--P-FDLLFASTLNM---YLPKLKVLSLRCTTLN  152 (250)
Q Consensus       108 ~~i~---~~c~~L~~L~L~~--~-i~d~~~~~i~~---~~~~L~~L~L~~~~it  152 (250)
                      ..++   ..+++|++++|+.  . ++++++.+++.   .+++|++|++..+...
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            8887   4568899877754  3 89988888775   7899999999655433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.96  E-value=5.9e-09  Score=80.97  Aligned_cols=97  Identities=14%  Similarity=0.164  Sum_probs=82.6

Q ss_pred             HHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHH---hCCCCceeEecCC-CCHHHHHHHHh---cCCCccEEEeecCCC
Q 025607           80 TGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQ---NCRNFRELKIMGP-FDLLFASTLNM---YLPKLKVLSLRCTTL  151 (250)
Q Consensus        80 ~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~---~c~~L~~L~L~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~i  151 (250)
                      +.+..+..+.|.|++|+|+++ .++++++..++.   .+++|++|+++++ ++++++.+++.   ..+.|++|+|+++.+
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            567888889999999999987 799998887764   5688999999999 99988777764   578999999999999


Q ss_pred             CHHHHHHHHhc---CCCCcEEeeeCCCC
Q 025607          152 NRDALILILDG---LQNLEVLNISHCLL  176 (250)
Q Consensus       152 td~~l~~i~~~---c~~L~~Ldls~C~~  176 (250)
                      +++|+..+++.   ++.|++|+++++..
T Consensus        85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          85 TPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             chHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            99999888655   57899999998753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.4e-09  Score=84.27  Aligned_cols=104  Identities=15%  Similarity=0.164  Sum_probs=49.4

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcC
Q 025607           61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYL  138 (250)
Q Consensus        61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~  138 (250)
                      ..+++|+.|+|+++ .++.  + ..+..+++|++|++++|.++.-. ..+...+|+|++|+++++ +++ ..+..+. .+
T Consensus        38 ~~l~~L~~L~Ls~N-~i~~--l-~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~-~l  111 (162)
T d1a9na_          38 ATLDQFDAIDFSDN-EIRK--L-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDLDPLA-SL  111 (162)
T ss_dssp             GGTTCCSEEECCSS-CCCE--E-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGG-GC
T ss_pred             cccccCCEEECCCC-CCCc--c-CCcccCcchhhhhcccccccCCC-ccccccccccccceeccccccccccccccc-cc
Confidence            34556666666654 3332  1 11345566666666666443211 112234566666666555 332 1222232 55


Q ss_pred             CCccEEEeecCCCCHHH--HHHHHhcCCCCcEEe
Q 025607          139 PKLKVLSLRCTTLNRDA--LILILDGLQNLEVLN  170 (250)
Q Consensus       139 ~~L~~L~L~~~~itd~~--l~~i~~~c~~L~~Ld  170 (250)
                      |+|++|++.+|.+++..  -..++..+|+|++||
T Consensus       112 ~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         112 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666666555544321  122344566666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.6e-09  Score=82.66  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=79.4

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      .+.+++.|+|+++ +|+.  +..+...+++|+.|++++|.++.-  .. ...+|+|++|+++++ ++.-. ..+...+|+
T Consensus        16 n~~~lr~L~L~~n-~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l--~~-~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~   88 (162)
T d1a9na_          16 NAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNRICRIG-EGLDQALPD   88 (162)
T ss_dssp             CTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred             CcCcCcEEECCCC-CCCc--cCccccccccCCEEECCCCCCCcc--CC-cccCcchhhhhcccccccCCC-ccccccccc
Confidence            4568999999987 4443  223456789999999999977631  12 246899999999998 43211 123347999


Q ss_pred             ccEEEeecCCCCHH-HHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          141 LKVLSLRCTTLNRD-ALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       141 L~~L~L~~~~itd~-~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      |++|++..|.+++- .+.. +.++|+|++|++++|+...
T Consensus        89 L~~L~L~~N~i~~~~~l~~-l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDP-LASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCSSGGGG
T ss_pred             cccceeccccccccccccc-cccccccchhhcCCCcccc
Confidence            99999999998863 2333 5689999999999997544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=8.2e-09  Score=76.27  Aligned_cols=100  Identities=17%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             cEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEE
Q 025607           67 KRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLS  145 (250)
Q Consensus        67 ~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~  145 (250)
                      |.|+|++. ++++  +. -+.++++|++|++++|.++.- ...+ ..+++|+.|+++++ +++  +..++ .+|+|++|+
T Consensus         1 R~L~Ls~n-~l~~--l~-~l~~l~~L~~L~ls~N~l~~l-p~~~-~~l~~L~~L~l~~N~i~~--l~~~~-~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHK-DLTV--LC-HLEQLLLVTHLDLSHNRLRAL-PPAL-AALRCLEVLQASDNALEN--VDGVA-NLPRLQELL   71 (124)
T ss_dssp             SEEECTTS-CCSS--CC-CGGGGTTCCEEECCSSCCCCC-CGGG-GGCTTCCEEECCSSCCCC--CGGGT-TCSSCCEEE
T ss_pred             CEEEcCCC-CCCC--Cc-ccccCCCCCEEECCCCccCcc-hhhh-hhhhcccccccccccccc--cCccc-cccccCeEE
Confidence            45666654 3332  11 145667777777777755421 0122 34677777777666 432  11233 677777777


Q ss_pred             eecCCCCHHH-HHHHHhcCCCCcEEeeeCCCC
Q 025607          146 LRCTTLNRDA-LILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       146 L~~~~itd~~-l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ++.+.+++-. +.. +..+|+|+.|++++...
T Consensus        72 l~~N~i~~~~~~~~-l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          72 LCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSCCCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred             CCCCccCCCCCchh-hcCCCCCCEEECCCCcC
Confidence            7777766432 222 35677777777777543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.34  E-value=9.8e-09  Score=81.91  Aligned_cols=106  Identities=22%  Similarity=0.192  Sum_probs=75.8

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      ..++|+.|+|+++ .+++  +. .+.++++|+.|++++|.+++  +..+...+++|+.|+++++ +++  +..+. .+++
T Consensus        46 ~L~~L~~L~Ls~n-~I~~--i~-~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~--l~~~~-~l~~  116 (198)
T d1m9la_          46 TLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGIE-KLVN  116 (198)
T ss_dssp             HTTTCCEEECSEE-EESC--CC-CHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCC--HHHHH-HHHH
T ss_pred             cccccceeECccc-CCCC--cc-cccCCccccChhhccccccc--ccccccccccccccccccccccc--ccccc-cccc
Confidence            5789999999865 4543  21 25678999999999996543  1123334568999999888 664  23343 6789


Q ss_pred             ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      |+.|++++|.+++-.-..-+.++|+|++|++++++.
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCcc
Confidence            999999888888754333457899999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.32  E-value=2.2e-07  Score=73.47  Aligned_cols=77  Identities=12%  Similarity=0.116  Sum_probs=39.6

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      ..++.|.++++. +++  +..+ +.+++|++|+++++ .+++-  . .+.++++|++|++++|.+..-.  .+ ..+++|
T Consensus        40 ~~l~~L~l~~~~-i~~--l~~l-~~l~nL~~L~Ls~N-~l~~~--~-~l~~l~~L~~L~l~~n~~~~~~--~l-~~l~~L  108 (199)
T d2omxa2          40 DQVTTLQADRLG-IKS--IDGV-EYLNNLTQINFSNN-QLTDI--T-PLKNLTKLVDILMNNNQIADIT--PL-ANLTNL  108 (199)
T ss_dssp             TTCCEEECTTSC-CCC--CTTG-GGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSCCCCCG--GG-TTCTTC
T ss_pred             cCCCEEECCCCC-CCC--cccc-ccCCCcCcCccccc-cccCc--c-cccCCccccccccccccccccc--cc-cccccc
Confidence            355666665542 222  1122 35677777777765 34431  1 1456677777777766432211  11 245666


Q ss_pred             ceeEecCC
Q 025607          118 RELKIMGP  125 (250)
Q Consensus       118 ~~L~L~~~  125 (250)
                      +.|+++++
T Consensus       109 ~~L~l~~~  116 (199)
T d2omxa2         109 TGLTLFNN  116 (199)
T ss_dssp             SEEECCSS
T ss_pred             cccccccc
Confidence            66666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.29  E-value=2.6e-08  Score=79.36  Aligned_cols=123  Identities=23%  Similarity=0.172  Sum_probs=85.8

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      -.+++.|+++++. +++  +..+ ..+++|+.|+|+++ .+++  +..+...+++|+.|++++|.+++  +..+ ..+++
T Consensus        47 L~~L~~L~Ls~n~-I~~--i~~l-~~l~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~~L~l~~N~i~~--l~~~-~~l~~  116 (198)
T d1m9la_          47 LKACKHLALSTNN-IEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIAS--LSGI-EKLVN  116 (198)
T ss_dssp             TTTCCEEECSEEE-ESC--CCCH-HHHTTCCEEECCEE-EECS--CSSHHHHHHHCCEEECSEEECCC--HHHH-HHHHH
T ss_pred             ccccceeECcccC-CCC--cccc-cCCccccChhhccc-cccc--ccccccccccccccccccccccc--cccc-ccccc
Confidence            3578889887653 332  1222 36789999999977 4443  12233445789999999998775  2333 34689


Q ss_pred             CceeEecCC-CCH-HHHHHHHhcCCCccEEEeecCCCCHHH---------HHHHHhcCCCCcEEe
Q 025607          117 FRELKIMGP-FDL-LFASTLNMYLPKLKVLSLRCTTLNRDA---------LILILDGLQNLEVLN  170 (250)
Q Consensus       117 L~~L~L~~~-i~d-~~~~~i~~~~~~L~~L~L~~~~itd~~---------l~~i~~~c~~L~~Ld  170 (250)
                      |+.|+++++ +++ ..+..+. .+|+|+.|++.+|.++...         ...++..+|+|+.||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHT-TTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhcccccccccc-CCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999999988 765 3445555 7999999999887765432         233567899999997

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.5e-07  Score=69.06  Aligned_cols=87  Identities=20%  Similarity=0.127  Sum_probs=61.3

Q ss_pred             HHHHHhcCCCCCEEEecCCCCCHH-HHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcCCCccEEEeecCCCCH-----
Q 025607           82 ICKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLPKLKVLSLRCTTLNR-----  153 (250)
Q Consensus        82 l~~~~~~c~~L~~L~Ls~c~~~d~-~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~~~L~~L~L~~~~itd-----  153 (250)
                      +..+..++++|+.|+|++|.+++- .+......+|+|+.|+++++ +++ ..+..+  ...+|+.|++.+|.++.     
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTTSTTSSSSSSH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh--hccccceeecCCCCcCcCcccc
Confidence            444557899999999999977642 33444567899999999888 554 233333  35579999998777652     


Q ss_pred             -HHHHHHHhcCCCCcEEe
Q 025607          154 -DALILILDGLQNLEVLN  170 (250)
Q Consensus       154 -~~l~~i~~~c~~L~~Ld  170 (250)
                       .-...+.+.+|+|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence             33556777899999986

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.18  E-value=6.2e-07  Score=71.41  Aligned_cols=125  Identities=18%  Similarity=0.238  Sum_probs=87.6

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++++.|+++++. +++  +..+ ..+++|+.|+++++ .+++  +. .+..+++|+.|+++++.+++  +.. ...++
T Consensus        66 ~l~~L~~L~L~~n~-i~~--l~~~-~~l~~L~~L~l~~n-~i~~--l~-~l~~l~~L~~L~l~~~~~~~--~~~-l~~l~  134 (210)
T d1h6ta2          66 YLPNVTKLFLNGNK-LTD--IKPL-ANLKNLGWLFLDEN-KVKD--LS-SLKDLKKLKSLSLEHNGISD--ING-LVHLP  134 (210)
T ss_dssp             GCTTCCEEECCSSC-CCC--CGGG-TTCTTCCEEECCSS-CCCC--GG-GGTTCTTCCEEECTTSCCCC--CGG-GGGCT
T ss_pred             hCCCCCEEeCCCcc-ccC--cccc-ccCccccccccccc-cccc--cc-cccccccccccccccccccc--ccc-ccccc
Confidence            36689999998764 443  2223 46899999999976 5654  22 36778999999999985543  122 24578


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  178 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~  178 (250)
                      +++.++++++ +++..  . ...+++|+.+++.++.+++  +.. +.++++|+.|++++|. ++
T Consensus       135 ~l~~l~~~~n~l~~~~--~-~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~L~Ls~N~-i~  191 (210)
T d1h6ta2         135 QLESLYLGNNKITDIT--V-LSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNH-IS  191 (210)
T ss_dssp             TCCEEECCSSCCCCCG--G-GGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CC
T ss_pred             cccccccccccccccc--c-ccccccccccccccccccc--ccc-ccCCCCCCEEECCCCC-CC
Confidence            8999999877 55421  1 2368899999998888875  322 4578999999999884 44

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=1.3e-07  Score=69.61  Aligned_cols=102  Identities=19%  Similarity=0.218  Sum_probs=74.4

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHH-HHHHHHhcC
Q 025607           61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLL-FASTLNMYL  138 (250)
Q Consensus        61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~-~~~~i~~~~  138 (250)
                      ..+++|++|++++. .++.  +...+..+++|+.|++++|.+++-  ..+ ..+|+|++|+++++ +++- .+..+. .+
T Consensus        17 ~~l~~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~N~i~~l--~~~-~~l~~L~~L~l~~N~i~~~~~~~~l~-~~   89 (124)
T d1dcea3          17 EQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNALENV--DGV-ANLPRLQELLLCNNRLQQSAAIQPLV-SC   89 (124)
T ss_dssp             GGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSCCCCC--GGG-TTCSSCCEEECCSSCCCSSSTTGGGG-GC
T ss_pred             ccCCCCCEEECCCC-ccCc--chhhhhhhhccccccccccccccc--Ccc-ccccccCeEECCCCccCCCCCchhhc-CC
Confidence            46789999999965 5553  323467899999999999977542  233 46899999999987 5532 233443 79


Q ss_pred             CCccEEEeecCCCCHHH--HHHHHhcCCCCcEE
Q 025607          139 PKLKVLSLRCTTLNRDA--LILILDGLQNLEVL  169 (250)
Q Consensus       139 ~~L~~L~L~~~~itd~~--l~~i~~~c~~L~~L  169 (250)
                      |+|+.|++.+|.+++..  ...+....|+|+.|
T Consensus        90 ~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          90 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999999888887532  34566778998876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.10  E-value=8.9e-07  Score=71.04  Aligned_cols=126  Identities=17%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ....++.+.+..+..-+   +..+ ..+++|+.++++++......    .+...+.++.+.++++.+....  . ...++
T Consensus        83 ~l~~l~~l~~~~n~~~~---i~~l-~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~--~-~~~~~  151 (227)
T d1h6ua2          83 NLTKITELELSGNPLKN---VSAI-AGLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNIS--P-LAGLT  151 (227)
T ss_dssp             TCCSCCEEECCSCCCSC---CGGG-TTCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCG--G-GGGCT
T ss_pred             ccccccccccccccccc---cccc-cccccccccccccccccccc----hhccccchhhhhchhhhhchhh--h-hcccc
Confidence            45678888776653322   2223 36889999999877543322    2456788888888887554321  1 24578


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      +|++|.++++ +++..  .+ ..+++|++|+++++++++  +.. +.++|+|++|++++| +++.
T Consensus       152 ~L~~L~l~~n~~~~~~--~l-~~l~~L~~L~Ls~n~l~~--l~~-l~~l~~L~~L~Ls~N-~lt~  209 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLT--PL-ANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNN-QISD  209 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GG-TTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTS-CCCB
T ss_pred             ccccccccccccccch--hh-cccccceecccCCCccCC--Chh-hcCCCCCCEEECcCC-cCCC
Confidence            8898888877 44321  13 378889999997778875  222 467888999999888 4553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.04  E-value=1.5e-06  Score=68.49  Aligned_cols=126  Identities=20%  Similarity=0.161  Sum_probs=91.6

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++++.|+++++. +++-  .. ...+++|+.|+++++...+-.    .+.+++.|+.|+++++......  . ...++
T Consensus        60 ~l~nL~~L~Ls~N~-l~~~--~~-l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~~~~~~~~--~-~~~l~  128 (199)
T d2omxa2          60 YLNNLTQINFSNNQ-LTDI--TP-LKNLTKLVDILMNNNQIADIT----PLANLTNLTGLTLFNNQITDID--P-LKNLT  128 (199)
T ss_dssp             GCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCG--G-GTTCT
T ss_pred             cCCCcCcCcccccc-ccCc--cc-ccCCccccccccccccccccc----cccccccccccccccccccccc--c-cchhh
Confidence            35789999998874 4431  12 347899999999987544322    2578999999999998543211  1 34689


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      +|+.|+++++ ++.  +..+ ..+++|+.|++.++.+++-  .. +.++++|++|++++|. +++
T Consensus       129 ~L~~L~l~~n~l~~--~~~l-~~~~~L~~L~l~~n~l~~l--~~-l~~l~~L~~L~ls~N~-i~~  186 (199)
T d2omxa2         129 NLNRLELSSNTISD--ISAL-SGLTSLQQLNFSSNQVTDL--KP-LANLTTLERLDISSNK-VSD  186 (199)
T ss_dssp             TCSEEECCSSCCCC--CGGG-TTCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCC
T ss_pred             hhHHhhhhhhhhcc--cccc-cccccccccccccccccCC--cc-ccCCCCCCEEECCCCC-CCC
Confidence            9999999988 542  1223 3789999999988888862  22 4689999999999995 654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.03  E-value=1.8e-06  Score=73.59  Aligned_cols=124  Identities=20%  Similarity=0.194  Sum_probs=78.8

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..+.++.+.+..+. +++  +.. ...+++|+.|+++++. ++.  +. .+..++.++.+.++.+.+++-  .. ...++
T Consensus       239 ~l~~L~~L~l~~n~-l~~--~~~-~~~~~~L~~L~l~~~~-l~~--~~-~~~~~~~l~~l~~~~n~l~~~--~~-~~~~~  307 (384)
T d2omza2         239 SLTNLTDLDLANNQ-ISN--LAP-LSGLTKLTELKLGANQ-ISN--IS-PLAGLTALTNLELNENQLEDI--SP-ISNLK  307 (384)
T ss_dssp             GCTTCSEEECCSSC-CCC--CGG-GTTCTTCSEEECCSSC-CCC--CG-GGTTCTTCSEEECCSSCCSCC--GG-GGGCT
T ss_pred             cccccchhccccCc-cCC--CCc-ccccccCCEeeccCcc-cCC--CC-ccccccccccccccccccccc--cc-cchhc
Confidence            45678888887764 332  111 2457899999998653 332  11 245677788888877765431  11 34567


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ++++|+++++ +++-  ..+ ..+|+|++|++++|.+++  +.. +.++|+|++|++++|..
T Consensus       308 ~l~~L~ls~n~l~~l--~~l-~~l~~L~~L~L~~n~l~~--l~~-l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         308 NLTYLTLYFNNISDI--SPV-SSLTKLQRLFFANNKVSD--VSS-LANLTNINWLSAGHNQI  363 (384)
T ss_dssp             TCSEEECCSSCCSCC--GGG-GGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCC
T ss_pred             ccCeEECCCCCCCCC--ccc-ccCCCCCEEECCCCCCCC--Chh-HcCCCCCCEEECCCCcC
Confidence            8888888776 5432  122 367888888887777775  333 45678888888887743

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.00  E-value=2.2e-06  Score=68.05  Aligned_cols=122  Identities=16%  Similarity=0.236  Sum_probs=87.9

Q ss_pred             CccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCc
Q 025607           39 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  118 (250)
Q Consensus        39 ~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~  118 (250)
                      .++.+.++.+. +++  +..+ +.+++|++|+|+++ .+++  +. .+..+++|+.|++++|.+++  +.. ...+++|+
T Consensus        47 ~L~~L~l~~~~-i~~--l~~l-~~l~~L~~L~L~~n-~i~~--l~-~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~  115 (210)
T d1h6ta2          47 SIDQIIANNSD-IKS--VQGI-QYLPNVTKLFLNGN-KLTD--IK-PLANLKNLGWLFLDENKVKD--LSS-LKDLKKLK  115 (210)
T ss_dssp             TCCEEECTTSC-CCC--CTTG-GGCTTCCEEECCSS-CCCC--CG-GGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCC
T ss_pred             CccEEECcCCC-CCC--chhH-hhCCCCCEEeCCCc-cccC--cc-ccccCccccccccccccccc--ccc-cccccccc
Confidence            57778777654 322  1122 57999999999987 5554  22 24688999999999998775  222 34579999


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          119 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       119 ~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      .|+++++ +++  +..+. .+++|+.+++.++.+++..   ....+++|+.++++++...
T Consensus       116 ~L~l~~~~~~~--~~~l~-~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         116 SLSLEHNGISD--INGLV-HLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             EEECTTSCCCC--CGGGG-GCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCC
T ss_pred             ccccccccccc--ccccc-ccccccccccccccccccc---ccccccccccccccccccc
Confidence            9999887 432  12233 7899999999888888643   2457899999999999643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.92  E-value=5e-06  Score=66.47  Aligned_cols=126  Identities=16%  Similarity=0.120  Sum_probs=83.9

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..++++.|+++.+...+-..    ...+++|+.++++++. +++  +. .+.++++|+.++++++...+..  . ....+
T Consensus        61 ~l~~L~~L~ls~n~i~~~~~----l~~l~~l~~l~~~~n~-~~~--i~-~l~~l~~L~~l~l~~~~~~~~~--~-~~~~~  129 (227)
T d1h6ua2          61 YLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKN--VS-AIAGLQSIKTLDLTSTQITDVT--P-LAGLS  129 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSC--CG-GGTTCTTCCEEECTTSCCCCCG--G-GTTCT
T ss_pred             cCCCCcEeecCCceeecccc----cccccccccccccccc-ccc--cc-cccccccccccccccccccccc--h-hcccc
Confidence            36788888888764322111    3568899999998763 332  11 2567899999999988543311  1 23468


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      .++.+.++.+ +....  .+ ..+++|++|++.++.+++..  . +.++++|+.|++++|. +++
T Consensus       130 ~~~~l~~~~~~~~~~~--~~-~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~Ls~n~-l~~  187 (227)
T d1h6ua2         130 NLQVLYLDLNQITNIS--PL-AGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNK-ISD  187 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GG-GGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCC
T ss_pred             chhhhhchhhhhchhh--hh-ccccccccccccccccccch--h-hcccccceecccCCCc-cCC
Confidence            8888888776 33211  12 36889999999888877532  1 4678999999999984 543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.7e-06  Score=65.00  Aligned_cols=88  Identities=19%  Similarity=0.275  Sum_probs=64.8

Q ss_pred             HHHHHHhhCCCCcEEEcCCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCH-HHHHHHHHhCCCCceeEecCC-CC----
Q 025607           55 QLTYTAERCPQLKRLVMPAWNRIKK-TGICKAIRMWRDLESLTMPSIANPP-YLMEEIAQNCRNFRELKIMGP-FD----  127 (250)
Q Consensus        55 ~L~~i~~~c~~L~~L~L~~c~~itd-~~l~~~~~~c~~L~~L~Ls~c~~~d-~~l~~i~~~c~~L~~L~L~~~-i~----  127 (250)
                      .+..+...+|+|+.|+|++. .+++ .++...+..+++|+.|++++|.+++ ..+..+  ..++|++|++++. ++    
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTTSTTSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhh--hccccceeecCCCCcCcCcc
Confidence            34556678999999999976 4544 3455667889999999999998765 233333  2467999999986 32    


Q ss_pred             --HHHHHHHHhcCCCccEEE
Q 025607          128 --LLFASTLNMYLPKLKVLS  145 (250)
Q Consensus       128 --d~~~~~i~~~~~~L~~L~  145 (250)
                        ......+.+.+|+|+.||
T Consensus       133 ~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         133 DQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SHHHHHHHHHTTSTTCCEET
T ss_pred             cchhHHHHHHHHCCCCCEEC
Confidence              234566777899999986

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.70  E-value=1.6e-05  Score=67.48  Aligned_cols=126  Identities=13%  Similarity=0.095  Sum_probs=87.6

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607           36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  115 (250)
Q Consensus        36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~  115 (250)
                      ..+.++.+.++++.. ++  +.. ...+++|+.|+++++. +++-  . .+..+++|+.|+++++.++.-.  . ...++
T Consensus       217 ~~~~L~~L~l~~n~l-~~--~~~-l~~l~~L~~L~l~~n~-l~~~--~-~~~~~~~L~~L~l~~~~l~~~~--~-~~~~~  285 (384)
T d2omza2         217 ILTNLDELSLNGNQL-KD--IGT-LASLTNLTDLDLANNQ-ISNL--A-PLSGLTKLTELKLGANQISNIS--P-LAGLT  285 (384)
T ss_dssp             GCTTCCEEECCSSCC-CC--CGG-GGGCTTCSEEECCSSC-CCCC--G-GGTTCTTCSEEECCSSCCCCCG--G-GTTCT
T ss_pred             ccCCCCEEECCCCCC-CC--cch-hhcccccchhccccCc-cCCC--C-cccccccCCEeeccCcccCCCC--c-ccccc
Confidence            356788888887643 32  112 2468999999999874 4432  1 2577899999999988664311  1 34578


Q ss_pred             CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607          116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  179 (250)
Q Consensus       116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~  179 (250)
                      .++.+.++.+ +++  +.. ...+++++.|+++.+.+++-  .. +..+|+|++|++++| .++.
T Consensus       286 ~l~~l~~~~n~l~~--~~~-~~~~~~l~~L~ls~n~l~~l--~~-l~~l~~L~~L~L~~n-~l~~  343 (384)
T d2omza2         286 ALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDI--SP-VSSLTKLQRLFFANN-KVSD  343 (384)
T ss_dssp             TCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCC--GG-GGGCTTCCEEECCSS-CCCC
T ss_pred             cccccccccccccc--ccc-cchhcccCeEECCCCCCCCC--cc-cccCCCCCEEECCCC-CCCC
Confidence            8999999877 543  112 34789999999988888863  22 567999999999999 4553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.51  E-value=7.4e-07  Score=69.89  Aligned_cols=110  Identities=13%  Similarity=0.059  Sum_probs=74.3

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      +++++|+|++. .++...-...+.++++|++|+++++.++.-.. ......++|++|+++++ ++.-...+ ...+++|+
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-~~~~~~~~L~~L~Ls~N~l~~l~~~~-F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKIKEISNKM-FLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSCCCCEECSSS-STTCTTCC
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccc-cccccccccceeeeccccccccCHHH-HhCCCccc
Confidence            57999999965 45421112345788999999999986643222 22335689999999987 33211111 23789999


Q ss_pred             EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      +|+|+.+.++.-. ...+.+.++|++|++++....
T Consensus       106 ~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         106 TLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCCccccccC-HHHhcCCcccccccccccccc
Confidence            9999888887421 112457899999999988654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4e-06  Score=68.82  Aligned_cols=129  Identities=19%  Similarity=0.164  Sum_probs=67.9

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607           37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  116 (250)
Q Consensus        37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~  116 (250)
                      .++++.|.++++. ++.  +... ...++|+.|+|+++ .++.  +...+.++++|+.|+++++.+..-. .......++
T Consensus        54 l~~L~~L~L~~N~-l~~--l~~~-~~l~~L~~L~Ls~N-~l~~--~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~  125 (266)
T d1p9ag_          54 YTRLTQLNLDRAE-LTK--LQVD-GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLGE  125 (266)
T ss_dssp             CTTCCEEECTTSC-CCE--EECC-SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCTT
T ss_pred             ccccccccccccc-ccc--cccc-cccccccccccccc-cccc--cccccccccccccccccccccceee-ccccccccc
Confidence            4678888887763 331  1111 35788999999876 3432  1224567788888888887432211 111234466


Q ss_pred             CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      +++|.++++ ++.-. ......+++|+.|++.+++++.-... ...++++|++|||+++.
T Consensus       126 l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         126 LQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAG-LLNGLENLDTLLLQENS  183 (266)
T ss_dssp             CCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             cccccccccccceec-cccccccccchhcccccccccccCcc-ccccccccceeecccCC
Confidence            666666554 22100 01112455666666655555432211 12345666666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4.6e-06  Score=68.92  Aligned_cols=38  Identities=18%  Similarity=0.030  Sum_probs=16.1

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      .+++|+++++..++++.-. ...+.++++|++||++++.
T Consensus       175 ~l~~L~~l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             TCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred             cccccchhhhhhccccccC-hhHhhhhhhcccccccccc
Confidence            3445555555444444211 1112344455555555444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.28  E-value=1.1e-05  Score=67.15  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=65.3

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607           61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  139 (250)
Q Consensus        61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~  139 (250)
                      ..+++|+.++++++. ++.  +.  ...+++|++|+++++..+...... ...++.+++|+++++ ++.-....+ ..++
T Consensus       147 ~~l~~L~~l~l~~n~-l~~--l~--~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~L~~s~n~l~~~~~~~~-~~l~  219 (305)
T d1xkua_         147 QGMKKLSYIRIADTN-ITT--IP--QGLPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSL-ANTP  219 (305)
T ss_dssp             GGCTTCCEEECCSSC-CCS--CC--SSCCTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTG-GGST
T ss_pred             ccccccCccccccCC-ccc--cC--cccCCccCEEECCCCcCCCCChhH-hhccccccccccccccccccccccc-cccc
Confidence            456778888887653 321  10  123577888888887544332222 245688888888776 433222222 3678


Q ss_pred             CccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607          140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  175 (250)
Q Consensus       140 ~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~  175 (250)
                      +|++|+|+++.++.  +..-+..+++|++|+++++.
T Consensus       220 ~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         220 HLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             TCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSC
T ss_pred             cceeeecccccccc--cccccccccCCCEEECCCCc
Confidence            88888887777763  22224567888888888875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.20  E-value=9.9e-07  Score=74.02  Aligned_cols=132  Identities=12%  Similarity=0.087  Sum_probs=76.4

Q ss_pred             CccEEEecCCCCCCHHHH-HHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607           39 SIRTLIFHFNLYVSDDQL-TYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  117 (250)
Q Consensus        39 ~l~~L~l~~~~~i~d~~L-~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L  117 (250)
                      +++.|+++++..-....+ ..| ...++|++|+|++|+.++.. +...+.++++|++|+|++|.++.... ......++|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccc-cccccccccccchhhhcccccccccc-ccccchhhh
Confidence            477777766432111011 123 35788999999877655421 22346788899999998886543222 223456888


Q ss_pred             ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC-CcEEeeeCCC
Q 025607          118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN-LEVLNISHCL  175 (250)
Q Consensus       118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~-L~~Ldls~C~  175 (250)
                      +.++++.+ +.......+ ..+++|+.+++..+.++...-.. ....+. ++.++++++.
T Consensus       128 ~~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             CEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSE
T ss_pred             cccccccccccccCchhh-ccCcccceeeccccccccccccc-ccccccccccccccccc
Confidence            88888776 221111123 37888888888777665321112 233444 4677776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=7.6e-06  Score=67.09  Aligned_cols=35  Identities=20%  Similarity=0.077  Sum_probs=15.1

Q ss_pred             cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeC
Q 025607          137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISH  173 (250)
Q Consensus       137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~  173 (250)
                      .+++|++|+|+.|+++.  +..-+...++|+.|++++
T Consensus       170 ~l~~L~~L~Ls~N~L~~--lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         170 GLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             TCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCS
T ss_pred             cccccceeecccCCCcc--cChhHCCCCCCCEEEecC
Confidence            34555555554444441  111112344555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=1.8e-05  Score=65.20  Aligned_cols=109  Identities=14%  Similarity=0.082  Sum_probs=63.3

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607           63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  141 (250)
Q Consensus        63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L  141 (250)
                      .++|+.+++++. .++.-. ...+..+++|++|+++++.++.-... ....+++|+.+.++++ ++.-....+ ..+++|
T Consensus       128 ~~~L~~l~l~~N-~l~~i~-~~~f~~~~~L~~L~l~~N~l~~l~~~-~f~~l~~L~~l~l~~N~l~~i~~~~f-~~l~~L  203 (284)
T d1ozna_         128 LAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRL  203 (284)
T ss_dssp             CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTT-TTCTTC
T ss_pred             hcccchhhhccc-cccccC-hhHhccccchhhcccccCcccccchh-hhccccccchhhhhhccccccChhHh-hhhhhc
Confidence            455666666543 232110 12345667777777777755421111 1235677888888766 332111122 367889


Q ss_pred             cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      ++|+++.+.++...- ....++++|++|++++.+-
T Consensus       204 ~~L~l~~N~i~~~~~-~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         204 MTLYLFANNLSALPT-EALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCE
T ss_pred             ccccccccccccccc-cccccccccCEEEecCCCC
Confidence            999997777765332 3456788899999888543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.92  E-value=1.7e-05  Score=61.78  Aligned_cols=87  Identities=10%  Similarity=0.042  Sum_probs=61.7

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607           90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV  168 (250)
Q Consensus        90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~  168 (250)
                      +++++|+|+++.++...........++|++|++++. ++.-.... ...+++|++|+|+.|+++.-. .....+.++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~-~~~~~~L~~L~Ls~N~l~~l~-~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccc-cccccccceeeeccccccccC-HHHHhCCCcccc
Confidence            589999999997754322233356799999999887 43221122 236899999999989887522 123567999999


Q ss_pred             EeeeCCCCcC
Q 025607          169 LNISHCLLID  178 (250)
Q Consensus       169 Ldls~C~~i~  178 (250)
                      |+|+++..-+
T Consensus       107 L~L~~N~l~~  116 (192)
T d1w8aa_         107 LNLYDNQISC  116 (192)
T ss_dssp             EECCSSCCCE
T ss_pred             cccCCccccc
Confidence            9999997544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.83  E-value=3.4e-05  Score=63.93  Aligned_cols=110  Identities=12%  Similarity=0.031  Sum_probs=75.5

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  140 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~  140 (250)
                      .+++|+.|+++++.. +.. ....+.+++.++.|++++|.++.-... ....+++|++|+|+++ ++.- ...+. .+++
T Consensus       169 ~~~~L~~L~l~~n~~-~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~-~~~~l~~L~~L~L~~N~L~~l-p~~l~-~l~~  243 (305)
T d1xkua_         169 LPPSLTELHLDGNKI-TKV-DAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVKV-PGGLA-DHKY  243 (305)
T ss_dssp             CCTTCSEEECTTSCC-CEE-CTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSSC-CTTTT-TCSS
T ss_pred             cCCccCEEECCCCcC-CCC-ChhHhhccccccccccccccccccccc-cccccccceeeeccccccccc-ccccc-cccC
Confidence            367899999997643 221 123467889999999999976543222 2246899999999988 4321 11233 6899


Q ss_pred             ccEEEeecCCCCHHHHH-----HHHhcCCCCcEEeeeCCCC
Q 025607          141 LKVLSLRCTTLNRDALI-----LILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       141 L~~L~L~~~~itd~~l~-----~i~~~c~~L~~Ldls~C~~  176 (250)
                      |++|+|+.|+|+.-+-.     .+....++|+.|++++.+-
T Consensus       244 L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            99999988888752111     1233468899999999863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.77  E-value=5.1e-06  Score=69.47  Aligned_cols=110  Identities=16%  Similarity=0.091  Sum_probs=73.5

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607           65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  142 (250)
Q Consensus        65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~  142 (250)
                      .++.|+|+++..-....+...+.++++|++|+|+++ .++......++ ++++|++|+++++ ++.... .....+++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIP-DFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECC-GGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccc-cccccchhhhcccccccccc-ccccchhhhc
Confidence            589999998633221123345788999999999974 55544334454 4799999999887 332111 1234789999


Q ss_pred             EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607          143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  177 (250)
Q Consensus       143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i  177 (250)
                      .+++..+.++.. +..-+.+++.|+.++++++...
T Consensus       129 ~l~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         129 TLDFSYNALSGT-LPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             EEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCE
T ss_pred             cccccccccccc-CchhhccCcccceeeccccccc
Confidence            999966654422 1122467899999999998654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.35  E-value=0.00042  Score=57.32  Aligned_cols=13  Identities=8%  Similarity=0.238  Sum_probs=6.2

Q ss_pred             CCCCcEEeeeCCC
Q 025607          163 LQNLEVLNISHCL  175 (250)
Q Consensus       163 c~~L~~Ldls~C~  175 (250)
                      +++|+.|+++++.
T Consensus       119 l~~L~~L~l~~~~  131 (353)
T d1jl5a_         119 SSFLKIIDVDNNS  131 (353)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             hccceeecccccc
Confidence            4445555554443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.00018  Score=54.08  Aligned_cols=60  Identities=22%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             CCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607          114 CRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  176 (250)
Q Consensus       114 c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~  176 (250)
                      .++|+.|+++++ ++.-...++ ..+++|++|+|+.|+++.  +..-+-...+|+.|+|++.+-
T Consensus        55 l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~--l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          55 LGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLNLSFNALES--LSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCCCSEEECCSSCCCEECTTGG-GSCSCCCEEECCSSCCSC--CCSTTTCSCCCCEEECCSSCC
T ss_pred             ccccCcceeeccccCCcccccc-cccccccceeccCCCCcc--cChhhhccccccccccCCCcc
Confidence            456666666555 221111111 256677777776666552  111111234577777776543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.002  Score=48.07  Aligned_cols=84  Identities=13%  Similarity=0.088  Sum_probs=56.9

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CC---HHHHHHHHhc
Q 025607           62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FD---LLFASTLNMY  137 (250)
Q Consensus        62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~---d~~~~~i~~~  137 (250)
                      ..++|++|.+.+.+.++.-.. ..+.++++|+.|++++|.++.-... .....++|++|+|+++ ++   ...    . .
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~Ls~N~l~~l~~~~----~-~  101 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNALESLSWKT----V-Q  101 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSCCSCCCSTT----T-C
T ss_pred             CccccCeeecCCCccccccCc-hhhccccccCcceeeccccCCcccc-cccccccccceeccCCCCcccChhh----h-c
Confidence            467899999976655543211 2356789999999999976532211 2245799999999987 33   221    1 3


Q ss_pred             CCCccEEEeecCCCC
Q 025607          138 LPKLKVLSLRCTTLN  152 (250)
Q Consensus       138 ~~~L~~L~L~~~~it  152 (250)
                      ..+|++|+|++|.+.
T Consensus       102 ~~~l~~L~L~~Np~~  116 (156)
T d2ifga3         102 GLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCCEEECCSSCCC
T ss_pred             cccccccccCCCccc
Confidence            457999999888765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.00024  Score=56.42  Aligned_cols=14  Identities=21%  Similarity=0.342  Sum_probs=7.3

Q ss_pred             hcCCCCCEEEecCC
Q 025607           87 RMWRDLESLTMPSI  100 (250)
Q Consensus        87 ~~c~~L~~L~Ls~c  100 (250)
                      .++++|++|++++|
T Consensus        50 ~~l~~L~~L~ls~n   63 (242)
T d1xwdc1          50 SGFGDLEKIEISQN   63 (242)
T ss_dssp             TTCTTCCEEEEESC
T ss_pred             hccchhhhhhhccc
Confidence            44555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.37  E-value=0.0085  Score=48.97  Aligned_cols=51  Identities=14%  Similarity=0.136  Sum_probs=25.0

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC
Q 025607           64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  125 (250)
Q Consensus        64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~  125 (250)
                      .++++|+|+++ .++.  +   -...++|++|+++++.++.     +....++|++|+++++
T Consensus        38 ~~l~~LdLs~~-~L~~--l---p~~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~l~~n   88 (353)
T d1jl5a_          38 RQAHELELNNL-GLSS--L---PELPPHLESLVASCNSLTE-----LPELPQSLKSLLVDNN   88 (353)
T ss_dssp             HTCSEEECTTS-CCSC--C---CSCCTTCSEEECCSSCCSS-----CCCCCTTCCEEECCSS
T ss_pred             cCCCEEEeCCC-CCCC--C---CCCCCCCCEEECCCCCCcc-----cccchhhhhhhhhhhc
Confidence            35777777655 2331  1   1223566666666665441     1122345555555444

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.0036  Score=35.86  Aligned_cols=29  Identities=10%  Similarity=0.080  Sum_probs=25.1

Q ss_pred             CCCcC----CcceeeecCCCchHHHHHHHHHHH
Q 025607            6 YIKIP----LEPYVYVHGHSDKQLTRILKISLS   34 (250)
Q Consensus         6 ~~~~p----l~if~~l~~~~~~~l~~v~~~~~~   34 (250)
                      |..+|    .+||+||+.+++.++++|||....
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~   33 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYR   33 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            45677    889999999999999999998654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.00051  Score=54.46  Aligned_cols=82  Identities=12%  Similarity=0.094  Sum_probs=43.2

Q ss_pred             CCccEEEecCCCC--CCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhC
Q 025607           38 GSIRTLIFHFNLY--VSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNC  114 (250)
Q Consensus        38 ~~l~~L~l~~~~~--i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c  114 (250)
                      ++++.|+++.+..  +.+..+    ..+++|+.|+|+++...+.-. ...+.+++++++|.+..+ .++.... .....+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f----~~l~~L~~L~ls~n~~~~~i~-~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l  102 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAF----SGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINP-EAFQNL  102 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTT----TTCTTCCEEEEESCTTCCEEC-SSSEESCTTCCEEEEECCTTCCEECT-TSEECC
T ss_pred             CCCCEEECcCCcCCccChhHh----hccchhhhhhhccccccceee-cccccccccccccccccccccccccc-cccccc
Confidence            3566777765431  112212    457788888887663322100 012345777777777654 3332111 112456


Q ss_pred             CCCceeEecCC
Q 025607          115 RNFRELKIMGP  125 (250)
Q Consensus       115 ~~L~~L~L~~~  125 (250)
                      ++|++|+++++
T Consensus       103 ~~L~~l~l~~~  113 (242)
T d1xwdc1         103 PNLQYLLISNT  113 (242)
T ss_dssp             TTCCEEEEESC
T ss_pred             ccccccccchh
Confidence            77888887665