Citrus Sinensis ID: 025622

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRYTISFAFFLFC
Secondary Structure (PSIPRED)
cccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccEEEccccccccccccccHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccEEcccccccccccccccEEEEcccccEEcccccccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccccEEEEccccHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mstalpmrlllplssvsttnattpffnsidfpskflkspnpnfnffassshptqhswrarrtkktwlcgnmrkdqdmdglrseeenvigmfgsdedvgtqiptqaqsvvegsgavmvsefkpvpdvDYLQELLAIQQqgpraigffgtrnmgFMHQELIEILSYALVITKnhiytsgasgtNAAVIRGALraerpdlltvilpqslkkqppeSQELLAKVKTVIekphndhlplieasrYTISFAFFLFC
Flexible Loop (DISEMBL)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFassshptqhswrarrtkktwlcgnmrkdqdmdglrSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILpqslkkqppeSQELLAKVKTVIEKPHNDHLPLIEASRYTISFAFFLFC
Low Complexity Region (SEG)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRYTISFAFFLFC
Disordered region (IsUnstruct)
***************************************************************KTWLCG***************************************V*GSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVIL**************LAKVKTVIEKPHNDHLPLIEASRYTISFAFFLF*
Disordered Region (DISOPRED)
***ALPMRLLLPLSSVSTTNATTPFFNSIDFPSKF*KSPNPNFNFFAS*****************WLCGNM******************MFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP***************KVKTVIEKPHNDHLPLIEASRYTISFAFFLFC
Disordered Region (DISEMBL)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASS***********RTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRYTISFAFFLFC
Disordered Region (DISPRO)
*STALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMR**************VIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRYTISFAFFLFC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRYTISFAFFLFC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
388516675	288	unknown [Lotus japonicus]	0.796	0.690	0.747	4e-82
224128754	212	predicted protein [Populus trichocarpa]	0.672	0.792	0.869	6e-82
359478235	297	PREDICTED: uncharacterized protein LOC10	0.712	0.599	0.825	9e-82
255637577	268	unknown [Glycine max]	0.888	0.828	0.655	2e-81
449444096	275	PREDICTED: uncharacterized protein LOC10	0.812	0.738	0.702	2e-81
225462553	286	PREDICTED: uncharacterized protein LOC10	0.696	0.608	0.816	3e-80
255547516	207	conserved hypothetical protein [Ricinus	0.652	0.787	0.877	1e-79
147771568	213	hypothetical protein VITISV_028411 [Viti	0.676	0.793	0.852	8e-78
147865628	274	hypothetical protein VITISV_036268 [Viti	0.696	0.635	0.763	1e-77
296085265	213	unnamed protein product [Vitis vinifera]	0.676	0.793	0.816	6e-77

>gi|388516675|gb|AFK46399.1| unknown [Lotus japonicus]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 157/210 (74%), Positives = 172/210 (81%), Gaps = 11/210 (5%)

Query: 40  NPNFNFFASSSHPTQHS-----WRARRTK-----KTWLCGNMRKDQDMDGLRSEEENVIG 89
           NPNFN F S S   QH      W    +K     +TWL G+M++DQD      E EN +G
Sbjct: 36  NPNFNAF-SVSLSQQHRRLGGYWNKTASKPFFPRRTWLYGHMKRDQDRHTPDYELENGLG 94

Query: 90  MFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTR 149
           +FGSDE  GTQIPTQAQS+VEG GA+ V+E+KPVPDVDYLQELLAIQQQGPRAIGFFGTR
Sbjct: 95  LFGSDEQRGTQIPTQAQSLVEGPGAIRVAEYKPVPDVDYLQELLAIQQQGPRAIGFFGTR 154

Query: 150 NMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ 209
           NMGFMHQELIEILSYA+VITKNHIYT GASGTNAAVIRGALRAE+PD LTVILPQSL KQ
Sbjct: 155 NMGFMHQELIEILSYAMVITKNHIYTPGASGTNAAVIRGALRAEKPDFLTVILPQSLSKQ 214

Query: 210 PPESQELLAKVKTVIEKPHNDHLPLIEASR 239
           PPESQELL+KVK VIEKP+NDHLPLIEASR
Sbjct: 215 PPESQELLSKVKKVIEKPYNDHLPLIEASR 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128754|ref|XP_002328958.1| predicted protein [Populus trichocarpa] gi|222839192|gb|EEE77543.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 146/168 (86%), Positives = 160/168 (95%)

Query: 72  RKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQE 131
           R DQ+MD  ++EEEN+  MFGS+ED G+QIPTQAQ++VEGSG V++SEFKPVPDVDYLQE
Sbjct: 1   RNDQEMDSWKAEEENIECMFGSNEDTGSQIPTQAQTIVEGSGTVVLSEFKPVPDVDYLQE 60

Query: 132 LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 191
           LLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR
Sbjct: 61  LLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 120

Query: 192 AERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASR 239
           AE+P+LLTVILPQSLKKQPPESQELLAKV+ VIEKPHNDHLPLIEASR
Sbjct: 121 AEKPELLTVILPQSLKKQPPESQELLAKVQNVIEKPHNDHLPLIEASR 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478235|ref|XP_002275901.2| PREDICTED: uncharacterized protein LOC100242287 [Vitis vinifera]

 Score =  309 bits (791), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 147/178 (82%), Positives = 163/178 (91%)

Query: 62  TKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFK 121
           ++  W+CG+MRKDQD    R EEEN   +F SDE+V +Q+PTQAQS+VEGSGAV+VSEFK
Sbjct: 76  SRHKWICGHMRKDQDGGSWRDEEENPGRIFCSDEEVASQVPTQAQSLVEGSGAVLVSEFK 135

Query: 122 PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGT 181
           PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGF HQELIEILSYA+VITKNHI+TSGASGT
Sbjct: 136 PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFTHQELIEILSYAMVITKNHIFTSGASGT 195

Query: 182 NAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASR 239
           NAAVIRGALRAE+P+LLTVILPQSLK QPPESQELL+KVK VIEKP+NDHLPLIEASR
Sbjct: 196 NAAVIRGALRAEKPELLTVILPQSLKMQPPESQELLSKVKNVIEKPYNDHLPLIEASR 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637577|gb|ACU19114.1| unknown [Glycine max]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 162/247 (65%), Positives = 187/247 (75%), Gaps = 25/247 (10%)

Query: 1   MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRAR 60
           MS  + + L L  SS+    A+ P +N           PNPNFN   S S     S   R
Sbjct: 1   MSATVTLTLNLCRSSIV---ASCPHYN---------HKPNPNFNALFSFSLSLSLSHHRR 48

Query: 61  --------RTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGS 112
                    +++TWL G+M++D+D      E EN + +FGSDE++ TQIPTQAQS+VEGS
Sbjct: 49  IAICKKPFSSRRTWLHGHMKRDRDY-----ELENGLALFGSDEELATQIPTQAQSLVEGS 103

Query: 113 GAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNH 172
           G++ V+EFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEI SYA+VITKNH
Sbjct: 104 GSIRVAEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEIFSYAMVITKNH 163

Query: 173 IYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHL 232
           IYT GASGTNAAVIRGALRAE+P+LLTVILPQSL+KQPPESQELL+KVK VIEKPHNDHL
Sbjct: 164 IYTFGASGTNAAVIRGALRAEKPELLTVILPQSLRKQPPESQELLSKVKNVIEKPHNDHL 223

Query: 233 PLIEASR 239
           PLIEASR
Sbjct: 224 PLIEASR 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444096|ref|XP_004139811.1| PREDICTED: uncharacterized protein LOC101209189 [Cucumis sativus] gi|449492610|ref|XP_004159047.1| PREDICTED: uncharacterized LOC101209189 [Cucumis sativus]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/222 (70%), Positives = 176/222 (79%), Gaps = 19/222 (8%)

Query: 20  NATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDG 79
           N + PFF           SP+PNF  F SS        R+      W+ G++R D D D 
Sbjct: 27  NISNPFF-----------SPSPNFPLFVSSRR------RSSLNTSLWIRGHIRGDTDGDS 69

Query: 80  LRSEEENVIGMFG--SDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQ 137
              ++ N + MFG  S+++ GTQIPTQAQS+VEGSG+VMVSEFKPVPDVDYLQELLAIQQ
Sbjct: 70  SVPQKNNTMRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQELLAIQQ 129

Query: 138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDL 197
           QGPRAIGFFGTRNMGF+HQELIEILSYA+VITKNHIYTSGASGTNAAVIRGALRAE+P+L
Sbjct: 130 QGPRAIGFFGTRNMGFLHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPEL 189

Query: 198 LTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASR 239
           LTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL LIEASR
Sbjct: 190 LTVILPQSLKKQPPESQELLSKVRNVIEKPHNDHLSLIEASR 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462553|ref|XP_002267280.1| PREDICTED: uncharacterized protein LOC100261763 [Vitis vinifera]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/174 (81%), Positives = 163/174 (93%)

Query: 66  WLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD 125
           WLCG MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D
Sbjct: 69  WLCGYMRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTD 128

Query: 126 VDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAV 185
           +DYLQELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHIYTSGASGTNAAV
Sbjct: 129 MDYLQELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHIYTSGASGTNAAV 188

Query: 186 IRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASR 239
           IRGALRAE+P+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL LIEASR
Sbjct: 189 IRGALRAEKPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLHLIEASR 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547516|ref|XP_002514815.1| conserved hypothetical protein [Ricinus communis] gi|223545866|gb|EEF47369.1| conserved hypothetical protein [Ricinus communis]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/163 (87%), Positives = 155/163 (95%)

Query: 77  MDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQ 136
           MD  ++EEEN++ MFG DED GTQIPTQAQS+VEGS  V+V+E+KPVPDVDYLQELLAIQ
Sbjct: 1   MDSWKAEEENLVSMFGPDEDTGTQIPTQAQSLVEGSSTVVVAEYKPVPDVDYLQELLAIQ 60

Query: 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPD 196
           QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI+TSGASGTNAAVIRGALRAE+P+
Sbjct: 61  QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIFTSGASGTNAAVIRGALRAEKPE 120

Query: 197 LLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASR 239
           LLTVILPQSLKKQPPESQELLAKV+ VIEKPHNDHLPLIEASR
Sbjct: 121 LLTVILPQSLKKQPPESQELLAKVQNVIEKPHNDHLPLIEASR 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771568|emb|CAN60471.1| hypothetical protein VITISV_028411 [Vitis vinifera] gi|296084366|emb|CBI24754.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 144/169 (85%), Positives = 156/169 (92%)

Query: 71  MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 130
           MRKDQD    R EEEN   +F SDE+V +Q+PTQAQS+VEGSGAV+VSEFKPVPDVDYLQ
Sbjct: 1   MRKDQDGGSWRDEEENPGRIFCSDEEVASQVPTQAQSLVEGSGAVLVSEFKPVPDVDYLQ 60

Query: 131 ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 190
           ELLAIQQQGPRAIGFFGTRNMGF HQELIEILSYA+VITKNHI+TSGASGTNAAVIRGAL
Sbjct: 61  ELLAIQQQGPRAIGFFGTRNMGFTHQELIEILSYAMVITKNHIFTSGASGTNAAVIRGAL 120

Query: 191 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASR 239
           RAE+P+LLTVILPQSLK QPPESQELL+KVK VIEKP+NDHLPLIEASR
Sbjct: 121 RAEKPELLTVILPQSLKMQPPESQELLSKVKNVIEKPYNDHLPLIEASR 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865628|emb|CAN78846.1| hypothetical protein VITISV_036268 [Vitis vinifera]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/186 (76%), Positives = 163/186 (87%), Gaps = 12/186 (6%)

Query: 66  WLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD 125
           WLCG MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D
Sbjct: 58  WLCGYMRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTD 117

Query: 126 VDYLQ------------ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI 173
           +DYLQ            ELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHI
Sbjct: 118 MDYLQVCHFVGLKVYMEELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHI 177

Query: 174 YTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLP 233
           YTSGASGTNAAVIRGALRAE+P+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL 
Sbjct: 178 YTSGASGTNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLH 237

Query: 234 LIEASR 239
           LIEASR
Sbjct: 238 LIEASR 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085265|emb|CBI28997.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 159/169 (94%)

Query: 71  MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 130
           MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D+DYLQ
Sbjct: 1   MRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTDMDYLQ 60

Query: 131 ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 190
           ELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHIYTSGASGTNAAVIRGAL
Sbjct: 61  ELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHIYTSGASGTNAAVIRGAL 120

Query: 191 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASR 239
           RAE+P+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL LIEASR
Sbjct: 121 RAEKPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLHLIEASR 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:1005716651	289	AT2G43945 [Arabidopsis thalian	0.948	0.820	0.647	6.5e-74
TAIR|locus:2080452	288	AT3G59870 "AT3G59870" [Arabido	0.936	0.812	0.630	9.9e-71

TAIR|locus:1005716651 AT2G43945 [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 160/247 (64%), Positives = 193/247 (78%)

Query:     1 MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSH--PTQH--- 55
             MS++LP+RLLLPL++ S  +   P  +S   PS F +S NPNF    SSS    +Q    
Sbjct:     1 MSSSLPLRLLLPLTT-SLISPPPPPPDSFHAPSSF-RSKNPNFKRRLSSSSCCSSQSQLF 58

Query:    56 SWRARRTKK-TWLC--GNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGS 112
             S R R   +   +C   +MR  ++ + L  +++++  +  SDED G +IPTQAQ++VEGS
Sbjct:    59 SGRCRSYSRCVTMCLPEHMRNQENTEILTDKDDHIECVLESDEDSGLRIPTQAQAIVEGS 118

Query:   113 GAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNH 172
             G+V VSE KP  DVDY+QELLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYA+VITKNH
Sbjct:   119 GSVAVSELKPAADVDYIQELLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYAMVITKNH 178

Query:   173 IYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHL 232
             IYTSGASGTNAAVIRGALRAERP+LLTVILPQSLKKQPPESQELL+KV+ V+EKPHNDHL
Sbjct:   179 IYTSGASGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQNVVEKPHNDHL 238

Query:   233 PLIEASR 239
             PL+EASR
Sbjct:   239 PLLEASR 245

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2080452 AT3G59870 "AT3G59870" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 157/249 (63%), Positives = 192/249 (77%)

Query:     1 MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQ-HSWRA 59
             MS+ALP++LLLPL++ S     +PF +  D P+ F +  + +    +S S   Q  S R 
Sbjct:     1 MSSALPLKLLLPLTTTSLL--PSPFRS--DNPN-FYRRRSSSSTSCSSQSQSFQLFSVRR 55

Query:    60 RRTKKTW----LC-GNMRKDQD-MDGLRSEEENVIGMFGSDEDV---GTQIPTQAQSVVE 110
             RR++ +     +C     +DQD +D   ++E+NV   F SDED    G +IPTQAQ++VE
Sbjct:    56 RRSRSSSPSIPMCFPEQTRDQDDVDSWVNKEDNVTCRFDSDEDTTTTGLRIPTQAQAIVE 115

Query:   111 GSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170
             G G++ VSE + VPDVDY+QELLAIQQQGPR IGFFGTRNMGFMHQELI+ILSYA+VITK
Sbjct:   116 GPGSLAVSELQRVPDVDYIQELLAIQQQGPRTIGFFGTRNMGFMHQELIQILSYAMVITK 175

Query:   171 NHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHND 230
             NHIYTSGA+GTNAAVIRGALRAERP+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHND
Sbjct:   176 NHIYTSGAAGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHND 235

Query:   231 HLPLIEASR 239
             HLPL+EASR
Sbjct:   236 HLPLLEASR 244


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       250   0.00080  114 3  11 22  0.44    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.92u 0.12s 24.04t   Elapsed:  00:00:01
  Total cpu time:  23.92u 0.12s 24.04t   Elapsed:  00:00:01
  Start:  Mon May 20 23:13:00 2013   End:  Mon May 20 23:13:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.87.73.1	hypothetical protein (212 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.329.1	annotation not avaliable (189 aa)			•						0.506
	eugene3.12600001	hypothetical protein (157 aa)			•						0.506
	eugene3.00100819	SubName- Full=Putative uncharacterized protein; (202 aa)			•						0.506
	eugene3.00081422	SubName- Full=Putative uncharacterized protein; (205 aa)			•						0.506
	gw1.I.8641.1	annotation not avaliable (113 aa)			•						0.505
	gw1.XIII.355.1	hypothetical protein (158 aa)			•						0.504
	gw1.IV.2700.1	hypothetical protein (68 aa)			•						0.504
	gw1.II.3817.1	photosystem II reaction center protein H PsbH (67 aa)			•						0.504
	grail3.20888000101	hypothetical protein (69 aa)			•						0.504
	gw1.II.3234.1	annotation not avaliable (153 aa)			•						0.503

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
PF02481	212	DNA_processg_A: DNA recombination-mediator protein	98.41
TIGR00732	220	dprA DNA protecting protein DprA. Disruption of th	97.82
TIGR00725	159	conserved hypothetical protein, DprA/Smf-related,	97.33
PRK10736	374	hypothetical protein; Provisional	96.64
COG0758	350	Smf Predicted Rossmann fold nucleotide-binding pro	95.05
TIGR00730	178	conserved hypothetical protein, DprA/Smf-related,	93.04
COG1611	205	Predicted Rossmann fold nucleotide-binding protein	86.53
PRK13660	182	hypothetical protein; Provisional	83.85
PF06908	177	DUF1273: Protein of unknown function (DUF1273); In	80.24

>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins

Probab=98.41  E-value=1.2e-06  Score=74.45  Aligned_cols=82  Identities=26%  Similarity=0.316  Sum_probs=62.0

Q ss_pred             cCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHH
Q 025622          138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQEL  216 (250)
Q Consensus       138 ~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~k-Qp~Es~el  216 (250)
                      .-.+.|||.|||+..=-.++..+-+.+.|+..|..|++.+|.|+.+++.+|||++ +...+ +|||..|++ .|.|.+++
T Consensus        42 ~~~~~iaIvGsR~~s~~g~~~a~~l~~~l~~~g~~vvSGlA~GiD~~ah~~al~~-~g~tI-aVl~~gl~~~yP~~n~~l  119 (212)
T PF02481_consen   42 NKQPSIAIVGSRNPSEYGLKFAKKLARELAKAGIVVVSGLAKGIDAAAHRGALDA-GGPTI-AVLACGLDNIYPKENREL  119 (212)
T ss_dssp             GGS-EEEEE--SS--HHHHHHHHHHHHHHHHHT-EEEE---TTHHHHHHHHHTTT----EE-EE-SS-TTS-SSGGGHHH
T ss_pred             ccCceEEEEcCCCCCHHHHHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHc-cCCEE-EEECCCcccccchhhHHH
Confidence            3478999999999999999999999999999999999999999999999999999 44444 457999987 59999999


Q ss_pred             HHHHh
Q 025622          217 LAKVK  221 (250)
Q Consensus       217 Le~V~  221 (250)
                      .+++.
T Consensus       120 ~~~i~  124 (212)
T PF02481_consen  120 AERIL  124 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99988

In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.

>TIGR00732 dprA DNA protecting protein DprA

Probab=97.82  E-value=0.00012  Score=63.09  Aligned_cols=79  Identities=22%  Similarity=0.262  Sum_probs=69.9

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHHHH
Q 025622          141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLAK  219 (250)
Q Consensus       141 rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQ-p~Es~elLe~  219 (250)
                      +.|||.|||+..--..++.+-+++.|+..|-.|++-||-|+-+|+.|||+++..  .--.|||..|++- |.|.+++.++
T Consensus        45 ~~iaIvGsR~~s~~~~~~a~~l~~~l~~~g~~IVSG~A~GiD~~ah~~al~~~g--~tIaVl~~gld~~yp~~n~~l~~~  122 (220)
T TIGR00732        45 RKVAIVGTRRPTKYGERWTRKLAEELAKNGVTIVSGLALGIDGIAHKAALKVNG--RTIAVLGTGLDQIYPRQNSKLAAK  122 (220)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHHhCCCEEEcCchhhHHHHHHHHHHHcCC--CEEEEECCCCccCCchhhHHHHHH
Confidence            789999999998889999999999999999999999999999999999999832  3335899999886 7888999988


Q ss_pred             Hh
Q 025622          220 VK  221 (250)
Q Consensus       220 V~  221 (250)
                      +.
T Consensus       123 i~  124 (220)
T TIGR00732       123 IA  124 (220)
T ss_pred             HH
Confidence            86

Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.

>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1

Probab=97.33  E-value=0.00061  Score=56.02  Aligned_cols=65  Identities=26%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeeccccc
Q 025622          141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLK  207 (250)
Q Consensus       141 rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~  207 (250)
                      |+||++|+|+.+=-+++..+-+.+.|+..|+.|++=|+.|.=.|+-|||+++ ... ..=|||+.+.
T Consensus         2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~Gg~~GlM~a~a~ga~~~-gg~-viGVlp~~l~   66 (159)
T TIGR00725         2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILINGGRTGVMEAVSKGAREA-GGL-VVGILPDEDF   66 (159)
T ss_pred             eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEcCCchhHHHHHHHHHHHC-CCe-EEEECChhhc
Confidence            7899999999988999999999999999999999978899999999999988 332 2336898874

This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.

>PRK10736 hypothetical protein; Provisional

Probab=96.64  E-value=0.011  Score=55.73  Aligned_cols=79  Identities=18%  Similarity=0.229  Sum_probs=67.5

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHHHHH
Q 025622          141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQELLAK  219 (250)
Q Consensus       141 rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~k-Qp~Es~elLe~  219 (250)
                      +.|||.|||++.---....+-+++.|+..|-.|+.-+|-|+-+++-+|||.+..  .--.||+-.|++ -|+|.+++.++
T Consensus       108 ~~iaiVGsR~~s~yg~~~~~~l~~~la~~g~~IVSGlA~GiD~~AH~~aL~~~g--~TIaVlg~Gld~~YP~~n~~L~~~  185 (374)
T PRK10736        108 PQLAVVGSRAHSWYGERWGRLFCEELAKNGLTITSGLARGIDGVAHRAALQAGG--KTIAVLGNGLENIYPRRHARLAES  185 (374)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECcchhhHHHHHHHHHHHcCC--CEEEEECCCCCccCCHhHHHHHHH
Confidence            679999999999999999999999999988766666689999999999999843  234488999987 48899999999


Q ss_pred             Hh
Q 025622          220 VK  221 (250)
Q Consensus       220 V~  221 (250)
                      +.
T Consensus       186 I~  187 (374)
T PRK10736        186 II  187 (374)
T ss_pred             HH
Confidence            83

>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]

Probab=95.05  E-value=0.22  Score=46.81  Aligned_cols=115  Identities=19%  Similarity=0.269  Sum_probs=87.5

Q ss_pred             cccccCCccccCCCCccchhhhcccceeeecccccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHH
Q 025622           88 IGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALV  167 (250)
Q Consensus        88 ~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~vD~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlv  167 (250)
                      ..+++-+|+   +-|..-..+-..+..+-.+.     ++|++.+         +.+||+|||++.-.-.+..+.++..|+
T Consensus        76 ~~~i~~~d~---~YP~~Lk~i~~pP~vLf~kG-----nl~ll~~---------~~vaIVGsR~~S~~g~~~~~~~a~~L~  138 (350)
T COG0758          76 IKIITLGDE---DYPKLLKEINDPPPVLFYKG-----NLDLLEA---------PSVAIVGSRKPSKYGLDYTRDLAEYLA  138 (350)
T ss_pred             CeEeccCCc---cchHHHHhccCCCeEEEEec-----CHhHhcc---------CceEEEeCCCCCHhHHHHHHHHHHHHH
Confidence            446666555   67777666666555444333     2444433         889999999999999999999999999


Q ss_pred             HhCCceeecCCCCchHHHHHhhhhhcCCCceeE-eecccccCC-ChhHHHHHHHHhh
Q 025622          168 ITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQSLKKQ-PPESQELLAKVKT  222 (250)
Q Consensus       168 l~gn~i~TSGA~GtNaAvIRGalrae~P~lLTV-iLPQSL~kQ-p~Es~elLe~V~~  222 (250)
                      ..|--|++-+|-|.-+++-++||.+.   -.|| ||.-.+++= |++-+.+.+++..
T Consensus       139 ~~g~~IvSGlA~GID~~AH~aaL~~~---G~TiaVl~~Gld~iYP~~n~~l~~~i~~  192 (350)
T COG0758         139 QNGITIVSGLARGIDTEAHKAALNAG---GKTIAVLATGLDKIYPRENIKLAEKIAE  192 (350)
T ss_pred             hCCeEEEecCcceecHHHHHHHHHcC---CcEEEEEcCCCCccCChhhHHHHHHHHh
Confidence            99999999999999999999999994   3465 667777764 5677777777654

>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2

Probab=93.04  E-value=0.3  Score=41.27  Aligned_cols=65  Identities=17%  Similarity=0.114  Sum_probs=50.6

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHHhCCceeecCC-CCchHHHHHhhhhhcCCCceeEeeccccc
Q 025622          141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLK  207 (250)
Q Consensus       141 rrIa~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRGalrae~P~lLTViLPQSL~  207 (250)
                      |+||++|+-..+.-  +.+..+-+.+.|+..|+.|+|-|+ .|.=-||-|||+++. - ...=|+|+.|.
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~g-G-~viGi~p~~l~   68 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG-G-TAVGVNPSGLF   68 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcC-C-eEEEecchhhh
Confidence            58999988665433  445677789999999999999997 899999999998873 2 23347888764

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.

>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

Probab=86.53  E-value=2.8  Score=36.44  Aligned_cols=73  Identities=33%  Similarity=0.302  Sum_probs=55.7

Q ss_pred             HhcCCceEEEe-cccc--cchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCC
Q 025622          136 QQQGPRAIGFF-GTRN--MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQP  210 (250)
Q Consensus       136 Qq~g~rrIa~l-GsRh--v~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp  210 (250)
                      -+.+-+.|+++ |+.+  .+--..++-.-+.++++.-|+-|||=|..|+=.||-|||+++  -...+=|+|.++..|-
T Consensus        10 ~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~GiMea~~~gA~~~--gg~~vGi~p~~~~~~e   85 (205)
T COG1611          10 LFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGPGVMEAVARGALEA--GGLVVGILPGLLHEQE   85 (205)
T ss_pred             cccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCchhhhhHHHHHHHHc--CCeEEEecCCCchhhc
Confidence            34567777765 4554  444456777788999999999999999999999999999965  3445557888877663

>PRK13660 hypothetical protein; Provisional

Probab=83.85  E-value=8.2  Score=33.48  Aligned_cols=82  Identities=26%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             ceEEEecccccch------------hHHHHHHHHHHHHHHhCCceeecCCCCch--HHHHHhhhhhcCCCc-eeEeeccc
Q 025622          141 RAIGFFGTRNMGF------------MHQELIEILSYALVITKNHIYTSGASGTN--AAVIRGALRAERPDL-LTVILPQS  205 (250)
Q Consensus       141 rrIa~lGsRhv~~------------~hq~LIEllsyAlvl~gn~i~TSGA~GtN--aAvIRGalrae~P~l-LTViLPQS  205 (250)
                      ++++|-|-|...+            +-..|-+-|..++-..=-++||+||-|+-  ||=+--.|+.+-|++ |-+++|=.
T Consensus         2 k~~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~   81 (182)
T PRK13660          2 KRLLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFE   81 (182)
T ss_pred             eEEEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCcc
Confidence            5788888888777            33333344444444555789999999986  455556678877886 66677732


Q ss_pred             c--cCCChhHHHHHHHHhh
Q 025622          206 L--KKQPPESQELLAKVKT  222 (250)
Q Consensus       206 L--~kQp~Es~elLe~V~~  222 (250)
                      =  ++=.++.|+.+.++++
T Consensus        82 ~q~~~W~e~~q~~y~~i~~  100 (182)
T PRK13660         82 EHGENWNEANQEKLANILK  100 (182)
T ss_pred             chhhcCCHHHHHHHHHHHH
Confidence            1  2236778888887755

>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain

Probab=80.24  E-value=12  Score=31.93  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=44.7

Q ss_pred             ceEEEeccccc------------chhHHHHHHHHHHHHHHhCCceeecCCCCchH--HHHHhhhhhcCCCc-eeEeeccc
Q 025622          141 RAIGFFGTRNM------------GFMHQELIEILSYALVITKNHIYTSGASGTNA--AVIRGALRAERPDL-LTVILPQS  205 (250)
Q Consensus       141 rrIa~lGsRhv------------~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa--AvIRGalrae~P~l-LTViLPQS  205 (250)
                      |+|+|-|-|-.            .++-..|-+.+..++-.+=-++||+||-|+-.  |-+--.|+.+-|++ |.+++|= 
T Consensus         2 ~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf-   80 (177)
T PF06908_consen    2 KRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPF-   80 (177)
T ss_dssp             -EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESS-
T ss_pred             eEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcc-
Confidence            56777776644            22444555555555556667999999999864  44555677878865 6677773 


Q ss_pred             ccCC----ChhHHHHHHHHhh
Q 025622          206 LKKQ----PPESQELLAKVKT  222 (250)
Q Consensus       206 L~kQ----p~Es~elLe~V~~  222 (250)
                       +.|    +++.|+.+.+++.
T Consensus        81 -~~q~~~W~~~~q~~y~~il~  100 (177)
T PF06908_consen   81 -ENQGNNWNEANQERYQSILE  100 (177)
T ss_dssp             -B-TTTTS-HHHHHHHHHHHH
T ss_pred             -cchhhcCCHHHHHHHHHHHH
Confidence             333    5678888888764

; PDB: 2NX2_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 39/298 (13%), Positives = 68/298 (22%), Gaps = 106/298 (35%)

Query: 7   MRLLLPLSSVSTTNATTPFFNSIDFPS-KFL--------KSPNPNFNFFASSSHPTQ--- 54
              L              F   +   + KFL        + P+     +           
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 55  ------HSWRARRTK--KTWLCGNMRKDQDMDGLRSEEENVI--GMFGS----------- 93
                 +  R +     +  L            LR  + NV+  G+ GS           
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLE----------LRPAK-NVLIDGVLGSGKTWVALDVCL 172

Query: 94  DEDVGTQIPTQAQSVVEGSGAV----MVSEFKPVPDVDYLQELLA-----------IQQQ 138
              V  ++             +    + +   P   ++ LQ+LL                
Sbjct: 173 SYKVQCKMD----------FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 139 GPRAIGFFGTRNMGFMHQE------LI-------EILSY------ALVITKNHIYTSGAS 179
               I          +  +      L+       +  +        L+ T+    T   S
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 180 GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEA 237
                 I           LT          P E + LL K    ++    D LP  E 
Sbjct: 283 AATTTHISLD---HHSMTLT----------PDEVKSLLLK---YLDCRPQD-LPR-EV 322

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
3maj_A	382	DNA processing chain A; MCSG, PSI-2, structural ge	97.52
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	97.48
2a33_A	215	Hypothetical protein; structural genomics, protein	97.18
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	97.17
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	97.17
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	97.15
3qua_A	199	Putative uncharacterized protein; structural genom	97.11
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	96.9
3uqz_A	288	DNA processing protein DPRA; SAM and rossmann fold	96.88
3sbx_A	189	Putative uncharacterized protein; structural genom	96.56
1ydh_A	216	AT5G11950; structural genomics, protein structure	96.52
3gh1_A	462	Predicted nucleotide-binding protein; structural g	93.52
2nx2_A	181	Hypothetical protein YPSA; structural genomics, un	93.37
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	92.7

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=97.52  E-value=0.00042  Score=63.71  Aligned_cols=79  Identities=22%  Similarity=0.243  Sum_probs=70.3

Q ss_pred             CceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHHH
Q 025622          140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLA  218 (250)
Q Consensus       140 ~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQ-p~Es~elLe  218 (250)
                      .+.|||.|||++.---.+..+-+++.|+..|-.|++-+|-|+-+|+-||||.+ .   --.||+-.+++- |++.+++.+
T Consensus       127 ~~~vAIVGsR~~s~yG~~~a~~l~~~La~~g~~VVSGlA~GID~~AH~~AL~~-g---TIaVLg~Gld~~YP~~n~~L~~  202 (382)
T 3maj_A          127 RPMIAIVGSRNASGAGLKFAGQLAADLGAAGFVVISGLARGIDQAAHRASLSS-G---TVAVLAGGHDKIYPAEHEDLLL  202 (382)
T ss_dssp             SCEEEEECCSSCCHHHHHHHHHHHHHHHHHTCEEEECCCTTHHHHHHHHHTTT-C---EEEECSSCTTSCSSGGGHHHHH
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHHHHHCCcEEEeCCccCHHHHHHHHHHhC-C---eEEEECCCcCccCCHhhHHHHH
Confidence            57899999999999999999999999999998888888999999999999997 3   445889999985 889999999


Q ss_pred             HHhh
Q 025622          219 KVKT  222 (250)
Q Consensus       219 ~V~~  222 (250)
                      ++..
T Consensus       203 ~I~~  206 (382)
T 3maj_A          203 DIIQ  206 (382)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9843

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A

Probab=97.48  E-value=0.00032  Score=57.69  Aligned_cols=65  Identities=18%  Similarity=0.219  Sum_probs=54.8

Q ss_pred             CCceEEEecccc--cchhHHHHHHHHHHHHHHhCCceeecCC-CCchHHHHHhhhhhcCCCceeEeeccc
Q 025622          139 GPRAIGFFGTRN--MGFMHQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQS  205 (250)
Q Consensus       139 g~rrIa~lGsRh--v~~~hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRGalrae~P~lLTViLPQS  205 (250)
                      ..++||++|||+  ..=-..+..+-+.+.|+..|..|+|=|+ .|.=.|+-|||+.+ .-.-+ -|||+.
T Consensus        12 ~~~~VaV~Gs~~~g~~~~~~~~A~~lg~~La~~g~~lVsGGg~~Gim~aa~~gAl~~-gG~ti-gVlP~~   79 (176)
T 2iz6_A           12 RKPIIGVMGPGKADTAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEA-GGTTI-GVLPGP   79 (176)
T ss_dssp             CCCEEEEECCCGGGCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHT-TCCEE-EEECC-
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCccCHhHHHHHHHHHc-CCEEE-EEeCch
Confidence            457899999999  6667788999999999999999999999 99999999999998 43333 357876

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A

Probab=97.18  E-value=0.00064  Score=57.34  Aligned_cols=69  Identities=22%  Similarity=0.195  Sum_probs=55.4

Q ss_pred             cCCceEEEe-cccccch-hHHHHHHHHHHHHHHhCCceeecCCC-CchHHHHHhhhhhcCCCceeEeecccccC
Q 025622          138 QGPRAIGFF-GTRNMGF-MHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLKK  208 (250)
Q Consensus       138 ~g~rrIa~l-GsRhv~~-~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~P~lLTViLPQSL~k  208 (250)
                      ..-++||++ |||+..= -..+..+-+.+.|+..|..|+|-||. |.=.|+-|||+.+. -.- .=|||..+..
T Consensus        11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsGGg~~GiM~aa~~gAl~~G-G~t-iGVlP~~~~~   82 (215)
T 2a33_A           11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGG-RHV-IGIIPKTLMP   82 (215)
T ss_dssp             CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTT-CCE-EEEEESSCC-
T ss_pred             CCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEECCChhhHhHHHHHHHHHcC-CcE-EEEcchHhcc
Confidence            345689999 9999643 35788999999999999999999996 99999999999983 333 3347887754

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1

Probab=97.17  E-value=0.0012  Score=55.63  Aligned_cols=65  Identities=25%  Similarity=0.214  Sum_probs=55.1

Q ss_pred             HHhcCCceEEEecccccch--hHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeE
Q 025622          135 IQQQGPRAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTV  200 (250)
Q Consensus       135 IQq~g~rrIa~lGsRhv~~--~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTV  200 (250)
                      ++.-|.+.||++|+|+.+-  -+.+..+-+.+.|+..|..|+|=||.|.=.||-|||+.+ .-.-+-|
T Consensus        32 l~~~~~~~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g~~lVsGGg~GiM~aa~~gAl~~-gG~~iGV   98 (217)
T 1wek_A           32 LSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEA-GGVSVGL   98 (217)
T ss_dssp             HHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHT-TCCEEEE
T ss_pred             HhhcCCCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHc-CCCEEEE
Confidence            4555656899999999986  667899999999999999999999999999999999998 4333333

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1

Probab=97.17  E-value=0.001  Score=54.72  Aligned_cols=65  Identities=14%  Similarity=0.144  Sum_probs=54.8

Q ss_pred             ceEEEecccccc--hhHHHHHHHHHHHHHHhCCceeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 025622          141 RAIGFFGTRNMG--FMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (250)
Q Consensus       141 rrIa~lGsRhv~--~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~P~lLTViLPQSL~  207 (250)
                      |+||++|+|+.+  =-+.+..+-+.+.|+..|..|+|-||. |.=.|+-|||+.+. - ...=|+|..|.
T Consensus         2 ~~V~V~gss~~~~~~~~~~~A~~lg~~La~~g~~lV~GGg~~GiM~aa~~gA~~~g-G-~~iGv~p~~l~   69 (191)
T 1t35_A            2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENG-G-TAIGVMPSGLF   69 (191)
T ss_dssp             CEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTT-C-CEEEEEETTCC
T ss_pred             CEEEEEECCCCCCChHHHHHHHHHHHHHHHCCCEEEECCCcccHHHHHHHHHHHcC-C-eEEEEeCchhc
Confidence            689999999974  457788899999999999999999997 99999999999983 3 34446788776

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1

Probab=97.15  E-value=0.00063  Score=54.98  Aligned_cols=62  Identities=13%  Similarity=0.032  Sum_probs=53.3

Q ss_pred             ceEEEecccccch--hHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 025622          141 RAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQ  204 (250)
Q Consensus       141 rrIa~lGsRhv~~--~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQ  204 (250)
                      ++||++|+|+.+-  -+.+..+-+.+.|+..|..|+|=|+.|.=.||-|||+.+.. . ..=|+|.
T Consensus         2 ~~V~V~gs~~~~~~~~~~~~A~~lg~~La~~g~~lV~Ggg~GiM~aa~~gAl~~gG-~-tiGV~~~   65 (171)
T 1weh_A            2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGMEALARGVKAKGG-L-VVGVTAP   65 (171)
T ss_dssp             EEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCSSTHHHHHHHHHHHTTC-C-EEECCCG
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHcCC-c-EEEEecc
Confidence            5799999999987  67889999999999999999999999999999999999833 2 3334465

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}

Probab=97.11  E-value=0.0016  Score=54.77  Aligned_cols=68  Identities=13%  Similarity=0.131  Sum_probs=56.3

Q ss_pred             cCCceEEEe-cccccchhHHHHHHHHHHHHHHhCCceeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 025622          138 QGPRAIGFF-GTRNMGFMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (250)
Q Consensus       138 ~g~rrIa~l-GsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~P~lLTViLPQSL~  207 (250)
                      .+.++||++ |+|...--+.+..+-+.+.|+..|+.|+|-|+. |.=.||-|||+++.  -...-|+|+.|.
T Consensus        20 ~~~~~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~lV~GGG~~GlM~a~~~gA~~~G--G~viGv~p~~l~   89 (199)
T 3qua_A           20 DRQWAVCVYCASGPTHPELLELAAEVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKG--GHTVGVIPKALV   89 (199)
T ss_dssp             -CCCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHHTT--CCEEEEEEGGGT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcC--CcEEEEeCchhh
Confidence            667899999 578666677888999999999999999999986 99999999999883  244557888774

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1

Probab=96.90  E-value=0.0027  Score=53.09  Aligned_cols=63  Identities=17%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             CceEEEeccccc-ch----hHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 025622          140 PRAIGFFGTRNM-GF----MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQ  204 (250)
Q Consensus       140 ~rrIa~lGsRhv-~~----~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQ  204 (250)
                      .++||++|+|+. .=    -..+..+-|.+.|+..|..|+|-|+.|.=.||-|||+.+. -. ..-|||.
T Consensus        23 m~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~vVsGg~~GiM~aa~~gAl~~G-G~-~iGVlP~   90 (195)
T 1rcu_A           23 MKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREAG-GT-VVGILPD   90 (195)
T ss_dssp             CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHTT-CC-EEEEEST
T ss_pred             CCeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHcC-Cc-EEEEeCC
Confidence            468999999875 22    5678889999999999999999999999999999999983 33 4445787

>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}

Probab=96.88  E-value=0.0032  Score=56.04  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             CceEEEecccccchhHHHHHHHHHHHHHHhCCceeecC-CCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHH
Q 025622          140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG-ASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELL  217 (250)
Q Consensus       140 ~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSG-A~GtNaAvIRGalrae~P~lLTViLPQSL~kQ-p~Es~elL  217 (250)
                      .+.|||.|||+..---.+..+-++..|+ .| ..++|| |-|+-+++-||||.+..+  --.||+..|++- |++.+++.
T Consensus       106 ~~~vaIVGsR~~s~yg~~~a~~l~~~La-~~-~~VVSGlA~GID~~AH~~aL~~~g~--TIaVl~~Gld~~YP~~n~~L~  181 (288)
T 3uqz_A          106 FPKVAVVGSRACSKQGAKSVEKVIQGLE-NE-LVIVSGLAKGIDTAAHMAALQNGGK--TIAVIGTGLDVFYPKANKRLQ  181 (288)
T ss_dssp             SCEEEEEECTTCCHHHHHHHHHHHHTTT-TC-SEEEECCCTTHHHHHHHHHHHHTCC--EEEECSSCTTCCSSGGGHHHH
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHHHHHh-hh-heEecCcccCHHHHHHHHHHhcCCC--EEEEecccccccCchhhHHHH
Confidence            3689999999999999999999999885 44 667777 689999999999998432  234799999874 77888887


Q ss_pred             HHHhh
Q 025622          218 AKVKT  222 (250)
Q Consensus       218 e~V~~  222 (250)
                      +++.+
T Consensus       182 ~~i~~  186 (288)
T 3uqz_A          182 DYIGN  186 (288)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            76654

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}

Probab=96.56  E-value=0.0086  Score=49.97  Aligned_cols=70  Identities=14%  Similarity=0.109  Sum_probs=53.5

Q ss_pred             HhcCCceEEEecc-cccchhHHHHHHHHHHHHHHhCCceeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 025622          136 QQQGPRAIGFFGT-RNMGFMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (250)
Q Consensus       136 Qq~g~rrIa~lGs-Rhv~~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~P~lLTViLPQSL~  207 (250)
                      -.+|.++||++|+ |...=-+.+.-+-+.+.|+..|+.|+|-|+. |.=.||-|||+.+. - ...=|+|+.|.
T Consensus         9 ~~~~~~~I~Vfg~s~~~~~~~~~~A~~lg~~la~~g~~lv~GGG~~GlM~a~~~ga~~~G-G-~viGv~p~~l~   80 (189)
T 3sbx_A            9 DEPGRWTVAVYCAAAPTHPELLELAGAVGAAIAARGWTLVWGGGHVSAMGAVSSAARAHG-G-WTVGVIPKMLV   80 (189)
T ss_dssp             ----CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHTTT-C-CEEEEEETTTT
T ss_pred             CCCCCeEEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcC-C-cEEEEcCchhh
Confidence            3567899999985 5344455678888999999999999999987 99999999999883 2 34456788764

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A

Probab=96.52  E-value=0.0066  Score=51.27  Aligned_cols=66  Identities=23%  Similarity=0.237  Sum_probs=52.6

Q ss_pred             CCceEEEe-cccccc-hhHHHHHHHHHHHHHHhCCceeecCCC-CchHHHHHhhhhhcCCCceeEeecccc
Q 025622          139 GPRAIGFF-GTRNMG-FMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSL  206 (250)
Q Consensus       139 g~rrIa~l-GsRhv~-~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~P~lLTViLPQSL  206 (250)
                      .-++||++ |+|... =-+.+.-+-+.+.|+..|..|+|-|+. |.=.||-|||+++..  ...=|+|+.+
T Consensus         8 ~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG--~~iGv~p~~l   76 (216)
T 1ydh_A            8 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGL--HVLGIIPKAL   76 (216)
T ss_dssp             SCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTC--CEEEEEEGGG
T ss_pred             CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCC--cEEEEechhc
Confidence            34689999 678753 456778888999999999999999997 999999999999833  3444567654

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A

Probab=93.52  E-value=0.25  Score=47.22  Aligned_cols=69  Identities=14%  Similarity=0.197  Sum_probs=55.6

Q ss_pred             hcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhc------CCCceeEeecccc
Q 025622          137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAE------RPDLLTVILPQSL  206 (250)
Q Consensus       137 q~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae------~P~lLTViLPQSL  206 (250)
                      ...++.+.++||....=-+-+..+-+.++|+..|+.|+|-|+.|.=-|+.+||..+.      .-..+-| +|+.|
T Consensus       144 ~r~~~IvV~cGSs~~~p~yye~A~eLGr~LA~~G~~LVtGGG~GLMeAa~aGA~~a~a~qr~aGG~vIGI-iP~~L  218 (462)
T 3gh1_A          144 GATPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGL-TEPSI  218 (462)
T ss_dssp             TCCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCTTCCEEEE-ECTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcHHHHHHHHHHHHHhccccccCCCeEEEE-ccchh
Confidence            356666779999887778888999999999999999999999999999999998873      3334444 46654

>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2

Probab=93.37  E-value=0.43  Score=38.94  Aligned_cols=82  Identities=18%  Similarity=0.177  Sum_probs=55.8

Q ss_pred             ceEEEecccccch------------hHHHHHHHHHHHHHHhC-CceeecCCCCchHHHHHhhhhh--cCC-CceeEeecc
Q 025622          141 RAIGFFGTRNMGF------------MHQELIEILSYALVITK-NHIYTSGASGTNAAVIRGALRA--ERP-DLLTVILPQ  204 (250)
Q Consensus       141 rrIa~lGsRhv~~------------~hq~LIEllsyAlvl~g-n~i~TSGA~GtNaAvIRGalra--e~P-~lLTViLPQ  204 (250)
                      ++|||-|-|..++            +-..|-+.|...+ -.| -+++|+||.|+=..+..-|+..  +-| =.|+||+|=
T Consensus         3 ~~i~vTGhR~~~l~if~~~~~~~~~ik~~L~~~l~~l~-~~G~~~~isgga~G~D~~aae~vl~lk~~y~~i~L~~v~Pf   81 (181)
T 2nx2_A            3 KVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFL-DEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPF   81 (181)
T ss_dssp             CEEEEEECCHHHHTCCSSCCHHHHHHHHHHHHHHHHHH-TTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESS
T ss_pred             eEEEEEeCCCccccCccccchHHHHHHHHHHHHHHHHH-hCCCcEEEECCCccHHHHHHHHHHHhccccCCceEEEEecc
Confidence            6899999998873            2333333333333 345 6999999999999998888773  346 468999993


Q ss_pred             ccc--CCChhHHHHHHHHhhh
Q 025622          205 SLK--KQPPESQELLAKVKTV  223 (250)
Q Consensus       205 SL~--kQp~Es~elLe~V~~l  223 (250)
                      .=-  +=+++.|+.+..++..
T Consensus        82 ~~~~~~w~~~~~~~y~~ll~~  102 (181)
T 2nx2_A           82 YEQEKNWKEPNKEQYEAVLAQ  102 (181)
T ss_dssp             BCTTTTSCHHHHHHHHHHHHH
T ss_pred             cchhhCCCHHHHHHHHHHHHh
Confidence            322  2267777777766543

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}

Probab=92.70  E-value=0.43  Score=45.44  Aligned_cols=69  Identities=14%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             cCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhh------cCCCceeEeeccccc
Q 025622          138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA------ERPDLLTVILPQSLK  207 (250)
Q Consensus       138 ~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra------e~P~lLTViLPQSL~  207 (250)
                      ..++.++++|+....=-.-+..+-+.+.|+..|..|+|-|+.|.=-|+++||..+      ..-..+= |+|+.|.
T Consensus       143 ~~~~ivVv~GSs~~~~~~Ye~A~eLGr~LA~~G~~LVtGGG~GlMEaa~aGA~~a~s~qr~~GG~vIG-IiP~~L~  217 (460)
T 3bq9_A          143 EEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLG-LTEPGII  217 (460)
T ss_dssp             CCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCSSCCEEE-EECTTTT
T ss_pred             CCCCEEEEEcCCCCCCHHHHHHHHHHHHHHHCCCEEEeCCcHHHhhHHHhhHHhhcccccCCCCEEEE-EeChhhh
Confidence            4456788999977654445788889999999999999999999998888998877      2333444 4566643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d1weha_	171	Hypothetical protein TT1887 (TTHA0294) {Thermus th	97.03
d2q4oa1	183	Hypothetical protein At2g37210/T2N18.3 {Thale cres	96.78
d1t35a_	179	Hypothetical protein YvdD {Bacillus subtilis [TaxI	96.66
d1rcua_	170	Hypothetical protein TM1055 {Thermotoga maritima [	96.53
d1ydhb_	181	Hypothetical protein At5g11950 {Thale cress (Arabi	96.44
d1weka_	208	Hypothetical protein TT1465 (TTHA1644) {Thermus th	96.39
d2nx2a1	177	Hypothetical protein YpsA {Bacillus subtilis [TaxI	95.58

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00064  Score=53.48  Aligned_cols=67  Identities=15%  Similarity=0.082  Sum_probs=56.7

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC
Q 025622          141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK  208 (250)
Q Consensus       141 rrIa~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~k  208 (250)
                      |.||+||+...+--  +.+..+-+.++|+..|+.++|=|+.|.=.||-|||.++ .-..+=|+.|+.+.+
T Consensus         2 k~V~Vfgss~~~~~~~~~~~a~~lG~~la~~g~~lv~GGg~G~M~a~a~ga~~~-gG~~iGv~~~~~l~~   70 (171)
T d1weha_           2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGMEALARGVKAK-GGLVVGVTAPAFFPE   70 (171)
T ss_dssp             EEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCSSTHHHHHHHHHHHT-TCCEEECCCGGGCTT
T ss_pred             CEEEEEecCCCCCCCHHHHHHHHHHHHHHHCCCceeeCcchHHHHHHHHHHHhc-cCceeeeeeccccch
Confidence            67999999987655  33667779999999999999999999999999999999 666777777877653

>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At2g37210/T2N18.3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.78  E-value=0.0013  Score=51.76  Aligned_cols=69  Identities=22%  Similarity=0.192  Sum_probs=53.3

Q ss_pred             hcCCceEEEecccccchh--HHHHHHHHHHHHHHhCCceeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 025622          137 QQGPRAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (250)
Q Consensus       137 q~g~rrIa~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~P~lLTViLPQSL~  207 (250)
                      +.--|+||+||+-..+--  +.+..+-|++.|+..|+.|+|.|+. |.=.|+-+||..+ . .....|.|..+.
T Consensus         3 ~~~~k~v~Vf~gs~~~~~~~~~~~a~~lg~~la~~g~~lV~GGG~~GlMga~a~ga~~~-g-g~v~Gi~~~~l~   74 (183)
T d2q4oa1           3 KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDG-G-RHVIGIIPKTLM   74 (183)
T ss_dssp             CCSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHT-T-CCEEEEEETTCC
T ss_pred             ccCCceEEEECcCCCCcCCHHHHHHHHHHHHHHHcCCeEEECCCCcchHHHHHHHHHhc-C-Cccccccccccc
Confidence            344589999986555443  4677788999999999999999986 9999999999988 4 445556666654

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

Probab=96.66  E-value=0.0011  Score=51.66  Aligned_cols=65  Identities=14%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHHhCCceeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 025622          141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (250)
Q Consensus       141 rrIa~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~P~lLTViLPQSL~  207 (250)
                      |+||+||+-..+.-  +.+..+-|++.|+..|+.|+|-|+. |.=.|+-|||..+ .-.. +-|.|..|.
T Consensus         2 k~v~VF~~s~~~~~~~~~~~a~~lg~~la~~g~~lv~GGG~~GlMga~a~ga~~~-gg~v-~gv~~~~l~   69 (179)
T d1t35a_           2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMEN-GGTA-IGVMPSGLF   69 (179)
T ss_dssp             CEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTT-TCCE-EEEEETTCC
T ss_pred             CEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHhcchhhc-CCce-eccccchhh
Confidence            78999986554443  4688889999999999999999975 9999999999987 4444 445565553

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

Probab=96.53  E-value=0.0043  Score=48.02  Aligned_cols=62  Identities=18%  Similarity=0.261  Sum_probs=49.6

Q ss_pred             ceEEEecc----cccch-hHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 025622          141 RAIGFFGT----RNMGF-MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQ  204 (250)
Q Consensus       141 rrIa~lGs----Rhv~~-~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQ  204 (250)
                      |||+++|+    ..-|. =..++-+-|.+.||..|+.|||-|..|.=.||-|||..+ .-..+- |||.
T Consensus         2 k~v~v~~~~~~~~~~p~~~~~~~a~~lG~~la~~g~~V~~GG~~GlM~ava~ga~~~-gg~viG-ilP~   68 (170)
T d1rcua_           2 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREA-GGTVVG-ILPD   68 (170)
T ss_dssp             CEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHT-TCCEEE-EEST
T ss_pred             ceEEEEEEecCCCCCcchHHHHHHHHHHHHHHHCCCEEECCCccCHHHHHHHHHHhc-CCcccc-ccch
Confidence            78888876    12333 478888889999999999999999999999999999998 444444 5784

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.44  E-value=0.0025  Score=49.92  Aligned_cols=65  Identities=23%  Similarity=0.301  Sum_probs=50.0

Q ss_pred             CceEEEecccccch--hHHHHHHHHHHHHHHhCCceeecCCC-CchHHHHHhhhhhcCCCceeEeecccc
Q 025622          140 PRAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSL  206 (250)
Q Consensus       140 ~rrIa~lGsRhv~~--~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~P~lLTViLPQSL  206 (250)
                      -|+||+||+-+.+-  -+.+..+-|++.|+..|+.++|.|+. |.=.|+-|||..+ .-..+=| .|+.|
T Consensus         2 ~k~v~Vf~gs~~~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~-gg~viGv-~~~~l   69 (181)
T d1ydhb_           2 FRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEG-GLHVLGI-IPKAL   69 (181)
T ss_dssp             CSEEEEECCSCCCSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHT-TCCEEEE-EEGGG
T ss_pred             CcEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhc-CCccccc-chhhh
Confidence            37999998655543  33567778899999999999999876 9999999999998 5444444 44433

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

Probab=96.39  E-value=0.0088  Score=48.08  Aligned_cols=76  Identities=24%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             HHHHhcCCceEEEecccccchhH--HHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCC
Q 025622          133 LAIQQQGPRAIGFFGTRNMGFMH--QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQP  210 (250)
Q Consensus       133 aaIQq~g~rrIa~lGsRhv~~~h--q~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp  210 (250)
                      .++-..+.+.||+||+...+--+  .+..+-|.+.|+..|+.|+|=|+.|.=-||-|||+.+ .-... =|.|..+..++
T Consensus        26 ~~~~~~~~~~V~Vfgsa~~~~~~~~y~~A~~LG~~La~~g~~lv~GGg~GlMgava~ga~~~-gG~vi-Gi~~~~~~~~~  103 (208)
T d1weka_          26 ETLSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEA-GGVSV-GLNIELPHEQK  103 (208)
T ss_dssp             HHHHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHT-TCCEE-EEEECCTTCCC
T ss_pred             HHHhhcCCCeEEEECCCCCCCcChHHHHHHHHHHHHHhCcceEEeCCCchHHHHHHhhhhhc-CCcee-ccccccccccc
Confidence            34666678899999999876532  4667789999999999999999999999999999999 44333 35566665554

>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: YpsA-like
domain: Hypothetical protein YpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.58  E-value=0.026  Score=44.66  Aligned_cols=81  Identities=22%  Similarity=0.258  Sum_probs=58.9

Q ss_pred             ceEEEeccccc------------chhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhh--hcCCC-ceeEeec--
Q 025622          141 RAIGFFGTRNM------------GFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR--AERPD-LLTVILP--  203 (250)
Q Consensus       141 rrIa~lGsRhv------------~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalr--ae~P~-lLTViLP--  203 (250)
                      |+|||-|-|..            .++-..|-+.+...+...=..++|+||-|+---+..-||.  .+-|+ .|.|+||  
T Consensus         2 k~i~vTGhR~~elg~f~~~~p~~~~Ik~~l~~~l~~l~e~G~~~~i~g~alG~D~~aAevvl~lk~~yp~ikL~~~lPf~   81 (177)
T d2nx2a1           2 KVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPFY   81 (177)
T ss_dssp             CEEEEEECCHHHHTCCSSCCHHHHHHHHHHHHHHHHHHTTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESSB
T ss_pred             cEEEEecCCCcccCCCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHHHHhhhCCCceEEEEeccc
Confidence            68888888833            2334455555655555566788999999998777666665  44465 5889999  


Q ss_pred             -ccccCCChhHHHHHHHHhh
Q 025622          204 -QSLKKQPPESQELLAKVKT  222 (250)
Q Consensus       204 -QSL~kQp~Es~elLe~V~~  222 (250)
                       |+ ++-+.+.|+.+.+++.
T Consensus        82 ~~~-~~w~e~~~~~y~~ll~  100 (177)
T d2nx2a1          82 EQE-KNWKEPNKEQYEAVLA  100 (177)
T ss_dssp             CTT-TTSCHHHHHHHHHHHH
T ss_pred             ccc-cCCCHHHHHHHHHHHh
Confidence             87 6889999998887655