Citrus Sinensis ID: 025644

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSLSSRK
Secondary Structure (PSIPRED)
cccccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHcHHccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHcccHcccccccHHHHcHHHcccccHHEEEEEcccccHHHHHHHHHHccEEEEcccccccccccccccHHHcccccccHHHHHHccccccEccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msladssweildisgsdvsdfGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHsletlrcggsprsnhAARRCLGIlkpklndvegdsWEELVNTdighgaqslrwfvwpnidkdsiemmstecpriivnpkpspfgfrgfevpreafpditlddpfvndidpsawavprfasmgistsllspnelSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKAtkslssrk
Flexible Loop (DISEMBL)
msladssweildisgsdvsdfGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGIlkpklndveGDSWEELVNTDighgaqslrwFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVerdtrlapkraknarqhqrraerewmetstsaKAIALaskatkslssrk
Low Complexity Region (SEG)
MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMEtstsakaialaskatkslssRK
Disordered region (IsUnstruct)
*******WEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLS*****MAEKFRLAFV*************************************************
Disordered Region (DISOPRED)
***ADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVP*****************SMAEKFRLAFVERDTRL**********************STSAKAIALASKATKS*****
Disordered Region (DISEMBL)
MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLA***********************SAKAIALA***********
Disordered Region (DISPRO)
MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPR*************NELSMAEKFRLAFVERDTRLAPKRAKNAR*HQ***EREWMETSTSAKAIALASKA********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALASKATKSLSSRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
225460963	347	PREDICTED: uncharacterized protein LOC10	0.996	0.717	0.710	1e-100
255583615	266	conserved hypothetical protein [Ricinus	0.984	0.924	0.723	7e-97
449444052	367	PREDICTED: uncharacterized protein LOC10	0.988	0.673	0.7	1e-96
356553046	351	PREDICTED: uncharacterized protein LOC10	0.992	0.706	0.676	1e-90
357494547	355	hypothetical protein MTR_5g092970 [Medic	0.992	0.698	0.666	7e-90
363806726	351	uncharacterized protein LOC100797026 [Gl	0.992	0.706	0.664	2e-89
224116614	355	predicted protein [Populus trichocarpa]	0.996	0.701	0.638	2e-88
343172605	314	hypothetical protein, partial [Silene la	0.984	0.783	0.642	7e-85
343172607	314	hypothetical protein, partial [Silene la	0.984	0.783	0.642	1e-84
30687441	343	uncharacterized protein [Arabidopsis tha	0.976	0.711	0.650	1e-83

>gi|225460963|ref|XP_002279971.1| PREDICTED: uncharacterized protein LOC100248711 [Vitis vinifera] gi|297737440|emb|CBI26641.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/249 (71%), Positives = 205/249 (82%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           +SLA+SSWEILDISGSDVSDFGL KVA+ CK L+AVDIS C ++TAAGVSE + HCHSLE
Sbjct: 98  ISLAESSWEILDISGSDVSDFGLAKVAERCKVLRAVDISRCSKVTAAGVSELVWHCHSLE 157

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS 120
           TLRCGG PRS+H AR+CLGI KPKLND+EG+SWEEL  T+I HGA+SLRW VWP ID +S
Sbjct: 158 TLRCGGCPRSDHTARQCLGIFKPKLNDIEGESWEELDPTEIAHGAESLRWLVWPKIDNNS 217

Query: 121 IEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGI 180
           +E  + ECPRIIVNPKPSPFGFRG +VP EA P++ LD+P V DIDP  WAV  F +   
Sbjct: 218 LESFAAECPRIIVNPKPSPFGFRGVKVPVEALPNVALDEPIVKDIDPRTWAVSGFTARPT 277

Query: 181 STSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALAS 240
           + S  S  EL +AEKFRLAFVERD+RLAPKRAKNARQH RRAEREW+ TST AKA+ALAS
Sbjct: 278 APSSPSSTELPIAEKFRLAFVERDSRLAPKRAKNARQHLRRAEREWVMTSTRAKALALAS 337

Query: 241 KATKSLSSR 249
           +A+KSL  R
Sbjct: 338 QASKSLHGR 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583615|ref|XP_002532563.1| conserved hypothetical protein [Ricinus communis] gi|223527718|gb|EEF29824.1| conserved hypothetical protein [Ricinus communis]

 Score =  359 bits (921), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 178/246 (72%), Positives = 206/246 (83%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           +SLADSSWEILD+SGSDV+D GL+ +A++CK L+AVDIS C  ITAAGVSE + HC SL+
Sbjct: 19  ISLADSSWEILDLSGSDVTDSGLMNIAEICKFLRAVDISRCHNITAAGVSEVIKHCKSLQ 78

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS 120
           TLRCGG PRS++ AR  L ILKPKLND+EGDSWEEL   +IGHGA+SLRW VWP IDK+S
Sbjct: 79  TLRCGGCPRSDYCARNSLYILKPKLNDMEGDSWEELDTAEIGHGAESLRWLVWPKIDKNS 138

Query: 121 IEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGI 180
           +E+M TECPRIIVNPKPSPFGFRG EVP+EA PD+ LDDP V DIDP  WA   FA   +
Sbjct: 139 MEIMDTECPRIIVNPKPSPFGFRGIEVPKEALPDMVLDDPIVKDIDPKTWATHGFAPKPV 198

Query: 181 STSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALAS 240
           ++SL S  ELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAE+E M  +T AKA+ALAS
Sbjct: 199 ASSLSSSTELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEKELMMMNTKAKALALAS 258

Query: 241 KATKSL 246
           +A+KSL
Sbjct: 259 RASKSL 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444052|ref|XP_004139789.1| PREDICTED: uncharacterized protein LOC101203553 [Cucumis sativus] gi|449518907|ref|XP_004166477.1| PREDICTED: uncharacterized LOC101203553 [Cucumis sativus]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 175/250 (70%), Positives = 206/250 (82%), Gaps = 3/250 (1%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           +SL DSSWE LD+SGS+VSDFGL ++ + CKSL+AVDIS C++ITAAGVSE + HC SLE
Sbjct: 119 ISLVDSSWETLDVSGSEVSDFGLAEIGKTCKSLRAVDISRCNKITAAGVSELVQHCCSLE 178

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS 120
           TLRCGG PRS++ ARR L I KP+L+D+EGDSWEEL   +I +GAQSLRW VWP +DKDS
Sbjct: 179 TLRCGGCPRSDYTARRSLDIFKPRLDDIEGDSWEELDTAEIANGAQSLRWLVWPKVDKDS 238

Query: 121 IEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPR-FASMG 179
           +E+ STECPRI +NPKPSPFGFRG +VP EA P+I LD+  + DIDP  WAV R  A   
Sbjct: 239 LEIFSTECPRITINPKPSPFGFRGKQVPGEALPNIALDEHTIVDIDPKTWAVGRSTARAP 298

Query: 180 ISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALA 239
           IS S  + +ELS+AEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWM TST AKA+ALA
Sbjct: 299 ISPS--NTSELSLAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMTTSTRAKALALA 356

Query: 240 SKATKSLSSR 249
           S+A+KSL SR
Sbjct: 357 SQASKSLQSR 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553046|ref|XP_003544869.1| PREDICTED: uncharacterized protein LOC100784617 [Glycine max]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 169/250 (67%), Positives = 198/250 (79%), Gaps = 2/250 (0%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           ++LAD+SWEILD+SGSDVSDFGL+K A++C+ +KA+DIS C +ITA G+SE + HCH LE
Sbjct: 101 IALADTSWEILDVSGSDVSDFGLIKAAEVCRFIKALDISRCTKITANGISELVKHCHLLE 160

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLND-VEGDSWEELVNTDIGHGAQSLRWFVWPNIDKD 119
           TLRCGG PR+++ ARRCLGI KPK +D VE DSWEEL   +I  GAQSLRW VWPNIDK+
Sbjct: 161 TLRCGGCPRTDNTARRCLGIFKPKFDDYVEEDSWEELDTKEIASGAQSLRWLVWPNIDKN 220

Query: 120 SIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMG 179
           S+E  STECPR++VNPK SPFGF+G EVPREA  +I LDD  V DIDP  W +  FA   
Sbjct: 221 SLEDFSTECPRVVVNPKSSPFGFKGTEVPREALQNIILDDEVVKDIDPRTWTMHGFALKP 280

Query: 180 ISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALA 239
           IS S  S  ELS+AEKFRLAFVERD RLAPKRAKNARQHQRRA RE M  ST AKA+ LA
Sbjct: 281 ISPSSSS-TELSVAEKFRLAFVERDNRLAPKRAKNARQHQRRAVRELMLMSTRAKAMVLA 339

Query: 240 SKATKSLSSR 249
           S+A+KSL  R
Sbjct: 340 SQASKSLHGR 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494547|ref|XP_003617562.1| hypothetical protein MTR_5g092970 [Medicago truncatula] gi|355518897|gb|AET00521.1| hypothetical protein MTR_5g092970 [Medicago truncatula] gi|388520841|gb|AFK48482.1| unknown [Medicago truncatula]

 Score =  335 bits (860), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 166/249 (66%), Positives = 196/249 (78%), Gaps = 1/249 (0%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           ++LAD+SWEILD+SGSDVSD GLVK A++C+S+KA+DIS C +ITA G+SE + HCHSLE
Sbjct: 106 IALADASWEILDVSGSDVSDLGLVKAAEVCRSVKALDISRCTKITATGISELVKHCHSLE 165

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS 120
           TLRCGG PRS++ ARRCL I KPKL  V  DSWEEL   ++ +GAQSLRW VWPNID +S
Sbjct: 166 TLRCGGCPRSDNTARRCLSIFKPKLEYVAEDSWEELDTKEMANGAQSLRWLVWPNIDNNS 225

Query: 121 IEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGI 180
           +E  STECPRI+VNPKPSPFGF G +VP EAF +I LDD  V DIDP  W +   A   I
Sbjct: 226 LEDFSTECPRIVVNPKPSPFGFMGTQVPFEAFQNIILDDAVVKDIDPKTWTMHGIAKRPI 285

Query: 181 STSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALAS 240
           S+   S  ELS+AEKFRLAF ERD RLAPKRAKNARQHQRRA R+ +  STSAKA+ LAS
Sbjct: 286 SSPSSS-TELSVAEKFRLAFEERDNRLAPKRAKNARQHQRRAARDMLLMSTSAKAVVLAS 344

Query: 241 KATKSLSSR 249
           +A+KSL SR
Sbjct: 345 QASKSLHSR 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806726|ref|NP_001242271.1| uncharacterized protein LOC100797026 [Glycine max] gi|255639475|gb|ACU20032.1| unknown [Glycine max]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/250 (66%), Positives = 196/250 (78%), Gaps = 2/250 (0%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           ++LAD+SWEILD+SGSDVSDFGL+K A++C+ +KA+DIS C +ITA G+SE + HC  LE
Sbjct: 101 IALADTSWEILDVSGSDVSDFGLIKAAEVCRFIKALDISRCTKITANGISELVKHCRLLE 160

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLND-VEGDSWEELVNTDIGHGAQSLRWFVWPNIDKD 119
           TLRCGG PRS++ ARRCLGI KPK +D VE DSWEEL   +I  GAQSL W VWPNIDK+
Sbjct: 161 TLRCGGCPRSDNTARRCLGIFKPKFDDYVEEDSWEELDTKEIASGAQSLGWLVWPNIDKN 220

Query: 120 SIEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMG 179
           S+E  STECPR++VNPK SPFGF+G EVP+EA  +I LDD  V DIDP  W +  FA   
Sbjct: 221 SLEDFSTECPRVMVNPKSSPFGFKGTEVPQEALQNILLDDEVVKDIDPRTWTMHGFALKP 280

Query: 180 ISTSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALA 239
           +S S LS  ELS+AEKFRLAFVERD RLAPKRAKNARQHQRRA RE M  ST AKA+ LA
Sbjct: 281 MSPS-LSSTELSVAEKFRLAFVERDNRLAPKRAKNARQHQRRAVRELMLISTRAKAMVLA 339

Query: 240 SKATKSLSSR 249
           S+ +KSL  R
Sbjct: 340 SQVSKSLHGR 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116614|ref|XP_002317347.1| predicted protein [Populus trichocarpa] gi|222860412|gb|EEE97959.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/249 (63%), Positives = 195/249 (78%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           + LAD+SWEILDISGS+V+D GL++V + CK L+AVDIS C++ITA+ VS  + HC SL+
Sbjct: 106 IPLADTSWEILDISGSEVTDSGLIEVTKTCKFLRAVDISRCNKITASSVSVLVEHCKSLQ 165

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS 120
           TLRCGG PRS++ AR CL +LKPKL+D+ GDSWEEL   +I H A+SL W VWP IDKDS
Sbjct: 166 TLRCGGCPRSDYTARCCLTLLKPKLDDMVGDSWEELDTAEISHNAESLHWLVWPKIDKDS 225

Query: 121 IEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGI 180
           +E+++TECPRI VNPK SPFGFRG ++P EAFPD  LDD FV +I+PS WA        +
Sbjct: 226 LEILATECPRISVNPKWSPFGFRGKDIPVEAFPDTALDDLFVQEINPSTWAANGITLKPV 285

Query: 181 STSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALAS 240
           S  L +  ELS+AEKFRLAFVERDTRLAPKRAKNARQHQRR++REWM  S  +KAI LAS
Sbjct: 286 SPILSNSKELSLAEKFRLAFVERDTRLAPKRAKNARQHQRRSDREWMTMSAESKAIVLAS 345

Query: 241 KATKSLSSR 249
           + +KSL  R
Sbjct: 346 QVSKSLHGR 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172605|gb|AEL99006.1| hypothetical protein, partial [Silene latifolia]

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 158/246 (64%), Positives = 183/246 (74%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           + LAD +WEILDIS SDVSDFGL K+A+MC+SL+AVDIS C  IT  GV+  +  C SLE
Sbjct: 69  LLLADDTWEILDISSSDVSDFGLAKIAEMCRSLRAVDISRCRNITPDGVARLVQLCPSLE 128

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS 120
           TLRCGG PRS+  ARR LG+ KP LN VE DSWEEL    I  G  SLRW VWP I  + 
Sbjct: 129 TLRCGGCPRSDFTARRSLGLFKPALNSVEEDSWEELDTAKITDGGDSLRWIVWPKIGPEF 188

Query: 121 IEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGI 180
           +E  S+ECPRI +NP+PSPFGF+G  VPREAFPDI LDDP + DIDPS WA     S  +
Sbjct: 189 LEDFSSECPRIKINPQPSPFGFKGAVVPREAFPDIVLDDPIIEDIDPSTWASFGRPSRIL 248

Query: 181 STSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALAS 240
                SP+ELSMAEKFRLAF ERDTRLAPKRAKNARQHQRRAE+EW   ++  KA++LAS
Sbjct: 249 VQPFCSPDELSMAEKFRLAFEERDTRLAPKRAKNARQHQRRAEKEWRMMTSEGKAVSLAS 308

Query: 241 KATKSL 246
           +ATK L
Sbjct: 309 QATKIL 314

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172607|gb|AEL99007.1| hypothetical protein, partial [Silene latifolia]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 158/246 (64%), Positives = 182/246 (73%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           + LAD +WEILDIS SDVSDFGL K+A+MC+SL+AVDIS C  IT  GV+  +  C SLE
Sbjct: 69  LLLADDTWEILDISSSDVSDFGLAKIAEMCRSLRAVDISRCRNITPDGVARLVQLCPSLE 128

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS 120
           TLRCGG PRS+  ARR LG+ KP LN VE DSWEEL    I  G  SLRW VWP I  + 
Sbjct: 129 TLRCGGCPRSDFTARRSLGLFKPALNSVEEDSWEELDTAKITDGGDSLRWIVWPKIGPEF 188

Query: 121 IEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGI 180
           +E  S+ECPRI +NP+PSPFGF+G  VPREAFPDI LDDP + DIDPS WA     S  +
Sbjct: 189 LEDFSSECPRIKINPQPSPFGFKGAVVPREAFPDIVLDDPIIEDIDPSTWASFGRPSRIL 248

Query: 181 STSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALAS 240
                SP+ELSMAEKFRLAF ERDTRLAPKRAKNARQHQRRAE+EW   +   KA++LAS
Sbjct: 249 VQPFCSPDELSMAEKFRLAFEERDTRLAPKRAKNARQHQRRAEKEWRMMTAEGKAVSLAS 308

Query: 241 KATKSL 246
           +ATK L
Sbjct: 309 QATKIL 314

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687441|ref|NP_194428.2| uncharacterized protein [Arabidopsis thaliana] gi|63003790|gb|AAY25424.1| At4g26980 [Arabidopsis thaliana] gi|90093278|gb|ABD85152.1| At4g26980 [Arabidopsis thaliana] gi|110737995|dbj|BAF00933.1| hypothetical protein [Arabidopsis thaliana] gi|332659880|gb|AEE85280.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/246 (65%), Positives = 192/246 (78%), Gaps = 2/246 (0%)

Query: 1   MSLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLE 60
           + LADSSWEILD+SGSDV++FGL KVA++CKSL+AVDIS C++I++ GV E + HC SLE
Sbjct: 97  ICLADSSWEILDVSGSDVTNFGLAKVAEICKSLRAVDISRCNKISSMGVLELVQHCRSLE 156

Query: 61  TLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDS 120
           TLRCGG P S   ARR L I KP L++VEG++WEE+  ++IGHG QSLRW VWP IDKDS
Sbjct: 157 TLRCGGCPSSESTARRSLSIFKPNLSNVEGETWEEIDTSEIGHGGQSLRWLVWPRIDKDS 216

Query: 121 IEMMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGI 180
           +EM+S+ECPRI+VNPKPS   +R  EVPREA PD+ LD+PFV DIDP  W V        
Sbjct: 217 LEMLSSECPRIVVNPKPSLVAYRADEVPREALPDVALDEPFVKDIDPKTWVVTGVVQKPT 276

Query: 181 STSLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWMETSTSAKAIALAS 240
           S  L   NELS+AEKFRLAF ERD R+APKRAKNARQ QRRAER+WM +S  AKA+  AS
Sbjct: 277 SFPL--SNELSIAEKFRLAFAERDARMAPKRAKNARQRQRRAERDWMMSSDEAKAMVFAS 334

Query: 241 KATKSL 246
           KAT+SL
Sbjct: 335 KATRSL 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2116307	343	AT4G26980 "AT4G26980" [Arabido	0.892	0.650	0.662	7.6e-80

TAIR|locus:2116307 AT4G26980 "AT4G26980" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 149/225 (66%), Positives = 177/225 (78%)

Query:     3 LADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETL 62
             LADSSWEILD+SGSDV++FGL KVA++CKSL+AVDIS C++I++ GV E + HC SLETL
Sbjct:    99 LADSSWEILDVSGSDVTNFGLAKVAEICKSLRAVDISRCNKISSMGVLELVQHCRSLETL 158

Query:    63 RCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIE 122
             RCGG P S   ARR L I KP L++VEG++WEE+  ++IGHG QSLRW VWP IDKDS+E
Sbjct:   159 RCGGCPSSESTARRSLSIFKPNLSNVEGETWEEIDTSEIGHGGQSLRWLVWPRIDKDSLE 218

Query:   123 MMSTECPRIIVNPKPSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFASMGIST 182
             M+S+ECPRI+VNPKPS   +R  EVPREA PD+ LD+PFV DIDP  W V         T
Sbjct:   219 MLSSECPRIVVNPKPSLVAYRADEVPREALPDVALDEPFVKDIDPKTWVVTGVVQK--PT 276

Query:   183 SLLSPNELSMAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWM 227
             S    NELS+AEKFRLAF ERD R+APKRAKNARQ QRRAER+WM
Sbjct:   277 SFPLSNELSIAEKFRLAFAERDARMAPKRAKNARQRQRRAERDWM 321


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       230   0.00083  113 3  11 22  0.39    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  206 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.47u 0.11s 19.58t   Elapsed:  00:00:01
  Total cpu time:  19.47u 0.11s 19.58t   Elapsed:  00:00:01
  Start:  Mon May 20 23:28:05 2013   End:  Mon May 20 23:28:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027319001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (347 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	1e-05

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 18  VSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCG 65
           + D GL+ +AQ C +L+ +D+  C+ IT +G+     +C  L+T+  G
Sbjct: 65  IDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLG 112

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
KOG4341	483	consensus F-box protein containing LRR [General fu	99.85
KOG4341	483	consensus F-box protein containing LRR [General fu	99.72
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.87
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.54
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	98.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.16
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.8
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.66
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.56
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.52
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.32
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	97.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.78
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.66
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.39
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.37
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.29
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.19
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.76
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	95.72
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.23
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	94.69
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	94.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.38
PLN03150	623	hypothetical protein; Provisional	91.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	89.86
KOG2982	418	consensus Uncharacterized conserved protein [Funct	89.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	89.54
KOG4308	478	consensus LRR-containing protein [Function unknown	88.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.25
KOG4308	478	consensus LRR-containing protein [Function unknown	86.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	84.88
PLN03150	623	hypothetical protein; Provisional	84.11
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	81.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	81.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	80.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	80.57

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.85  E-value=2.4e-22  Score=191.77  Aligned_cols=183  Identities=19%  Similarity=0.277  Sum_probs=149.4

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      +.|++|+|.+| .|||..|++++++||+|+|||+|||++|++.||+.+.++|.+|+.+.+.||....+.++..++.+|+-
T Consensus       190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~  269 (483)
T KOG4341|consen  190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE  269 (483)
T ss_pred             chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChH
Confidence            56888999998 89999999999999999999999999999999999999999999888889988888888899999998


Q ss_pred             CceecCCchhhhh---hhccccccccccccc---cCCCCHHHHHHHHhcCCCcee--cCCCCCCCcCCccCCCCCCCCCc
Q 025644           85 LNDVEGDSWEELV---NTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV--NPKPSPFGFRGFEVPREAFPDIT  156 (250)
Q Consensus        85 L~~L~~~s~~dl~---~~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~--~~~cs~~~~~g~~~~~~~l~~~~  156 (250)
                      +-.+++++|.+++   ...++.||+.||.|+   |.++||..+.++.++|++|++  ...|++|+++|...       +.
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-------l~  342 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-------LG  342 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-------hh
Confidence            8888877765444   455899999999985   899999999999999999999  66699999887653       45


Q ss_pred             CCCccccccCcCccc-ccCCcccccccCCCCCCCchHHHH
Q 025644          157 LDDPFVNDIDPSAWA-VPRFASMGISTSLLSPNELSMAEK  195 (250)
Q Consensus       157 l~~~~~~~i~~~~w~-~~~~~~r~~~~~~~~~~~l~~ae~  195 (250)
                      -.+++++++|.+.+- ..+.+....++--+.++.+|+-|+
T Consensus       343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc  382 (483)
T KOG4341|consen  343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC  382 (483)
T ss_pred             cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence            567788888887766 334445555555556666666543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.72  E-value=2.4e-18  Score=164.58  Aligned_cols=153  Identities=18%  Similarity=0.252  Sum_probs=120.7

Q ss_pred             cCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644            8 WEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN   86 (250)
Q Consensus         8 L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~   86 (250)
                      |++|+.++| ++||..+.++.++|++|+.|-|++|.+.||.|+..|+++|+.|+.|++.+|..+.|..+..++.+||.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            577777777 7888888888888888888888888888888888888888888888888887766667778888888888


Q ss_pred             eecCCchhhhhhh---c---ccccccccccc---ccCCCCHHHHHHHHhcCCCceecCC--CCCCCcCCccCCCCCCCCC
Q 025644           87 DVEGDSWEELVNT---D---IGHGAQSLRWF---VWPNIDKDSIEMMSTECPRIIVNPK--PSPFGFRGFEVPREAFPDI  155 (250)
Q Consensus        87 ~L~~~s~~dl~~~---~---i~~g~~~L~~L---~c~~ITD~sL~~La~~Cp~L~~~~~--cs~~~~~g~~~~~~~l~~~  155 (250)
                      +|..+-|+.++..   .   ...+...|+++   +||.|||++|+++. +||+|+.+..  |++++..+++....++|++
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i  454 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNI  454 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence            8866633333322   2   23555666666   59999999999998 8999999554  9999999999999999999


Q ss_pred             cCCCcc
Q 025644          156 TLDDPF  161 (250)
Q Consensus       156 ~l~~~~  161 (250)
                      ++|.-+
T Consensus       455 ~v~a~~  460 (483)
T KOG4341|consen  455 KVHAYF  460 (483)
T ss_pred             eehhhc
Confidence            998644

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.60  E-value=1.6e-15  Score=141.08  Aligned_cols=125  Identities=25%  Similarity=0.359  Sum_probs=100.4

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      .+|+.|||++| .|||.|+.+++..|++|++|.+.+|..+||.|+.++++.|++|++|++++|..+++.++..+..+||+
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~  322 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN  322 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc
Confidence            67899999999 69999999999999999999999999999999999999999999999999988888889999999999


Q ss_pred             CceecCCc------hhhhhh------------hccccccccccccc---cCCCCHHHHHHHHhcCCCc
Q 025644           85 LNDVEGDS------WEELVN------------TDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRI  131 (250)
Q Consensus        85 L~~L~~~s------~~dl~~------------~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L  131 (250)
                      |+.|...+      ++++..            ..++.+|..|+.+.   |. ++|.++..+..+||+|
T Consensus       323 l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  323 LRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL  389 (482)
T ss_pred             hhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence            88863222      222221            11334455554442   55 6777777777788877

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.41  E-value=1.7e-13  Score=127.49  Aligned_cols=128  Identities=22%  Similarity=0.309  Sum_probs=92.1

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCC-CCCcCHHH--HHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhh
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISC-CDRITAAG--VSEFLLHCHSLETLRCGGSPRSNHAARRCLGIL   81 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~-C~~ITD~g--l~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~   81 (250)
                      ++|+.|.+.+| .|+|.++..++..|++|+.|++++ |..+++.+  ...++..|++|+.|++++|..++|.++.+++..
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            56777778888 788888777888888888888877 55566655  555777777777777777776666677777777


Q ss_pred             CCCCceecCCch---hhhhhhccccccccccccc---cCCCCHHHHHHHHhcCCCcee
Q 025644           82 KPKLNDVEGDSW---EELVNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        82 cp~L~~L~~~s~---~dl~~~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~  133 (250)
                      ||+|+.|+...+   ++.....++.+|++|+.|+   |..+||.++.+++.+||+|+.
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~  325 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRE  325 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhh
Confidence            777777753333   3334555677777777764   777788888888888887666

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=7.3e-10  Score=103.75  Aligned_cols=84  Identities=20%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHh-CCCCCEEecCCC-CCCcHHHHHHHhhhC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLH-CHSLETLRCGGS-PRSNHAARRCLGILK   82 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~-C~~L~~L~l~gC-~~~dd~al~~l~~~c   82 (250)
                      ++|+.|||++| ++|.+|+..+-+.|..|..||||||..-|+. |..++.| -+.|..|+++|| ....+.-+..+...|
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc  312 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC  312 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence            89999999999 9999999999999999999999999977777 5544433 467777788887 333333455667777


Q ss_pred             CCCceecC
Q 025644           83 PKLNDVEG   90 (250)
Q Consensus        83 p~L~~L~~   90 (250)
                      |+|.+|..
T Consensus       313 p~l~~LDL  320 (419)
T KOG2120|consen  313 PNLVHLDL  320 (419)
T ss_pred             Cceeeecc
Confidence            87777643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.72  E-value=4.9e-08  Score=86.91  Aligned_cols=161  Identities=12%  Similarity=0.078  Sum_probs=96.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhc---C-CCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQM---C-KSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCL   78 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~---C-~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l   78 (250)
                      .+|++|+|++|.++|.++..+...   + ++|+.|++++|. +++.++..+.   .+|++|++|++++|...+. ....+
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l  185 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDA-GIRAL  185 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchH-HHHHH
Confidence            458889999888888888776543   3 788999999985 7766655544   4566888889888877654 23333


Q ss_pred             hhh---CCCCceecCCch--hhhhhhc---cccccccccccccC--CCCHHHHHHHHhcC----CCcee--cCCCCCCCc
Q 025644           79 GIL---KPKLNDVEGDSW--EELVNTD---IGHGAQSLRWFVWP--NIDKDSIEMMSTEC----PRIIV--NPKPSPFGF  142 (250)
Q Consensus        79 ~~~---cp~L~~L~~~s~--~dl~~~~---i~~g~~~L~~L~c~--~ITD~sL~~La~~C----p~L~~--~~~cs~~~~  142 (250)
                      ...   ++.|++|+...+  .+.....   ....+++|+.|...  .++|.++..+...+    +.|+.  ...| .+++
T Consensus       186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~  264 (319)
T cd00116         186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITD  264 (319)
T ss_pred             HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCc
Confidence            332   357887754432  2222111   22456677877643  58888888887765    56666  2222 2333


Q ss_pred             CCccCCCCCCCCCcCCCccccccCcCccccc
Q 025644          143 RGFEVPREAFPDITLDDPFVNDIDPSAWAVP  173 (250)
Q Consensus       143 ~g~~~~~~~l~~~~l~~~~~~~i~~~~w~~~  173 (250)
                      .|.....+.+|..    +.++.++.+.-.++
T Consensus       265 ~~~~~l~~~~~~~----~~L~~l~l~~N~l~  291 (319)
T cd00116         265 DGAKDLAEVLAEK----ESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHHHHHhcC----CCccEEECCCCCCc
Confidence            2332222333333    45555555554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.64  E-value=2.3e-07  Score=82.55  Aligned_cols=125  Identities=14%  Similarity=0.098  Sum_probs=90.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHH---hcCCCCCeEecCCCCCcCHHHHHHHHHhCC---CCCEEecCCCCCCcHHH--HHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFLLHCH---SLETLRCGGSPRSNHAA--RRC   77 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la---~~C~~L~~LdLS~C~~ITD~gl~~La~~C~---~L~~L~l~gC~~~dd~a--l~~   77 (250)
                      .+|+.|+|++|.+++.++..+.   .++++|++|++++| ++++.++..++..++   +|++|++++|...+...  +..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence            5899999999999977766655   45778999999998 599999988876555   99999999997665532  222


Q ss_pred             HhhhCCCCceecCCc--hhhhhhhccccc----cccccccc--cCCCCHHHHHHHHhcCCCc
Q 025644           78 LGILKPKLNDVEGDS--WEELVNTDIGHG----AQSLRWFV--WPNIDKDSIEMMSTECPRI  131 (250)
Q Consensus        78 l~~~cp~L~~L~~~s--~~dl~~~~i~~g----~~~L~~L~--c~~ITD~sL~~La~~Cp~L  131 (250)
                      ....+|+|++|+...  ..+.....++.+    ...|+.|+  .-.|+|.+...+...++.+
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~  277 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK  277 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC
Confidence            234578899985543  334344444444    36888876  3479998988887766644

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=5.2e-08  Score=91.50  Aligned_cols=135  Identities=15%  Similarity=0.180  Sum_probs=92.8

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCC-CcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCD-RITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP   83 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~-~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp   83 (250)
                      ..|..|||+.| ..||.--.+++.--++|..||||||. +..+.-|..|++.||+|.+|+++.|-...+.....+ ...|
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~  338 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFN  338 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-Hhcc
Confidence            46788999999 56666333455667889999999995 477778889999999999999999944333333232 3467


Q ss_pred             CCceecCCchhhhhhhc--ccccccccccccc-CCCCHHHHHHHHhcCCCceecCCCCCCCcC
Q 025644           84 KLNDVEGDSWEELVNTD--IGHGAQSLRWFVW-PNIDKDSIEMMSTECPRIIVNPKPSPFGFR  143 (250)
Q Consensus        84 ~L~~L~~~s~~dl~~~~--i~~g~~~L~~L~c-~~ITD~sL~~La~~Cp~L~~~~~cs~~~~~  143 (250)
                      .|++|...-|=++....  --...++|.+|+- --++|.+++.+...||+|+++  |+.|.+-
T Consensus       339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin--~q~~~~i  399 (419)
T KOG2120|consen  339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKIN--CQHFNFI  399 (419)
T ss_pred             hheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccccc--ceeeeee
Confidence            88887655554444211  1134456777753 357899999999999999995  3444433

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=98.42  E-value=2.1e-07  Score=56.26  Aligned_cols=26  Identities=31%  Similarity=0.666  Sum_probs=23.9

Q ss_pred             CCCCCeEecCCCCCcCHHHHHHHHHh
Q 025644           30 CKSLKAVDISCCDRITAAGVSEFLLH   55 (250)
Q Consensus        30 C~~L~~LdLS~C~~ITD~gl~~La~~   55 (250)
                      ||+|++|||++|.+|||.||.+|+++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~~   26 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAKG   26 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhcC
Confidence            89999999999999999999999863

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=1.5e-06  Score=77.46  Aligned_cols=81  Identities=22%  Similarity=0.280  Sum_probs=67.6

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN   86 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~   86 (250)
                      .++.+|-++|.|+-+|+..+- +++.|+.|.+..|.++.|.+|..|+.--|+|+.|+++||+.+++.++.+|.. .++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence            467788888889999998874 6888999999999999999999999988999999999999888888877765 56776


Q ss_pred             eec
Q 025644           87 DVE   89 (250)
Q Consensus        87 ~L~   89 (250)
                      .|.
T Consensus       180 ~L~  182 (221)
T KOG3864|consen  180 RLH  182 (221)
T ss_pred             HHH
Confidence            653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=3.8e-06  Score=74.86  Aligned_cols=82  Identities=27%  Similarity=0.363  Sum_probs=69.2

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHH--HHHHHhhhC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHA--ARRCLGILK   82 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~--al~~l~~~c   82 (250)
                      ++++.|.+..| .+-|.||..|+..-|+|+.|+||+|++|||.||..|.+ .++|+.|.+.+-+.+..-  ...-+..-+
T Consensus       125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~l~~v~~~e~~~~~Le~aL  203 (221)
T KOG3864|consen  125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYDLPYVANLELVQRQLEEAL  203 (221)
T ss_pred             chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcCchhhhchHHHHHHHHHhC
Confidence            67899999999 99999999999999999999999999999999999986 889999998887654442  223355668


Q ss_pred             CCCcee
Q 025644           83 PKLNDV   88 (250)
Q Consensus        83 p~L~~L   88 (250)
                      |+++.+
T Consensus       204 P~c~I~  209 (221)
T KOG3864|consen  204 PKCDIV  209 (221)
T ss_pred             ccccee
Confidence            887765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.80  E-value=4.2e-05  Score=78.54  Aligned_cols=123  Identities=23%  Similarity=0.254  Sum_probs=86.9

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      ++|++|||+|- .++..=...++.-+|.|++|.+++=.-..|+ +..+..+.|+|..||++|+..++-.|+.    .+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~GIS----~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLSGIS----RLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCcHHHh----cccc
Confidence            68999999999 7888888899999999999999996655555 9999999999999999999888765543    2455


Q ss_pred             CceecC-----Cchhhhh---------------------------hhccccccccccccccC--CCCHHHHHHHHhcCCC
Q 025644           85 LNDVEG-----DSWEELV---------------------------NTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPR  130 (250)
Q Consensus        85 L~~L~~-----~s~~dl~---------------------------~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~  130 (250)
                      |++|..     .++.++.                           .++-+..++.|++|+|+  .++++.++.+-..=|+
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            555422     2222211                           12224556666666664  5666666666655555


Q ss_pred             cee
Q 025644          131 IIV  133 (250)
Q Consensus       131 L~~  133 (250)
                      |+-
T Consensus       277 L~~  279 (699)
T KOG3665|consen  277 LQQ  279 (699)
T ss_pred             Hhh
Confidence            554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.66  E-value=3.9e-05  Score=46.18  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=21.9

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhc
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQM   29 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~   29 (250)
                      ++|++|||++| +|||.||.+|+++
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l~~~   26 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQALAKG   26 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHHhcC
Confidence            57999999999 9999999999863

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.56  E-value=6.9e-05  Score=71.46  Aligned_cols=141  Identities=19%  Similarity=0.268  Sum_probs=92.8

Q ss_pred             cCCCCCeEecCCCCCcCHHHH---HHHHHhCCCCCEEecCCCCCCcHHHHH-----------HHhhhCCCCceecCC--c
Q 025644           29 MCKSLKAVDISCCDRITAAGV---SEFLLHCHSLETLRCGGSPRSNHAARR-----------CLGILKPKLNDVEGD--S   92 (250)
Q Consensus        29 ~C~~L~~LdLS~C~~ITD~gl---~~La~~C~~L~~L~l~gC~~~dd~al~-----------~l~~~cp~L~~L~~~--s   92 (250)
                      +||+|++||||.. -++.+|+   ..+..+|..|++|.+.+|.+.-.++.+           -.+...|+|+++...  -
T Consensus        90 ~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   90 GCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             cCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            4889999999986 3655554   555689999999999999665554322           122346788886221  1


Q ss_pred             hhhhhhhcccc---ccccccccccC--CCCHHHHHHHH---hcCCCceecCC-CCCCCcCCccCCCCCCCCCcCCCcccc
Q 025644           93 WEELVNTDIGH---GAQSLRWFVWP--NIDKDSIEMMS---TECPRIIVNPK-PSPFGFRGFEVPREAFPDITLDDPFVN  163 (250)
Q Consensus        93 ~~dl~~~~i~~---g~~~L~~L~c~--~ITD~sL~~La---~~Cp~L~~~~~-cs~~~~~g~~~~~~~l~~~~l~~~~~~  163 (250)
                      .++-....++.   -++.|+.+.|+  .|-.+++++++   .+||+|++... ---||.-|......++|..+    ++.
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~----~L~  244 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP----HLR  244 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc----hhe
Confidence            23333333332   23466777775  47777775554   59999999333 23467789999999999886    666


Q ss_pred             ccCcCcccccC
Q 025644          164 DIDPSAWAVPR  174 (250)
Q Consensus       164 ~i~~~~w~~~~  174 (250)
                      +|.-.+|-+..
T Consensus       245 El~l~dcll~~  255 (382)
T KOG1909|consen  245 ELNLGDCLLEN  255 (382)
T ss_pred             eeccccccccc
Confidence            77666665443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.52  E-value=7.3e-05  Score=64.64  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=39.0

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN   86 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~   86 (250)
                      .++.|+|+|++|+.  +..+...+.+|+.||+|+|. |+.  |..+ .++++|++|++++-..++-.  ..+...+|+|+
T Consensus        20 ~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~--l~~l-~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~   91 (175)
T PF14580_consen   20 KLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ-ITK--LEGL-PGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQ   91 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS---S-C--HHHHHH-TT--
T ss_pred             cccccccccccccc--ccchhhhhcCCCEEECCCCC-Ccc--ccCc-cChhhhhhcccCCCCCCccc--cchHHhCCcCC
Confidence            57889999987776  45666677889999999985 543  2222 24788999999887665532  13445688999


Q ss_pred             eecCCc--hhhhhhhccccccccccccccC--CCC--HHHHHHHHhcCCCcee
Q 025644           87 DVEGDS--WEELVNTDIGHGAQSLRWFVWP--NID--KDSIEMMSTECPRIIV  133 (250)
Q Consensus        87 ~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~IT--D~sL~~La~~Cp~L~~  133 (250)
                      .|....  +.++..+..=..+++|+.|...  -|+  ..=...+...||+|++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV  144 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence            874322  3333222222356666666421  011  2234556667888877

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.32  E-value=5.9e-05  Score=65.21  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.||||+|+|++-  ..+ .+++.|+.|++++- .|++-+ ..+..+||+|++|.+++....+-..+..+. .||+|
T Consensus        42 ~~L~~L~Ls~N~I~~l--~~l-~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~-~l~~L  115 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKL--EGL-PGLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLS-SLPKL  115 (175)
T ss_dssp             TT--EEE-TTS--S----TT-----TT--EEE--SS----S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGG-G-TT-
T ss_pred             cCCCEEECCCCCCccc--cCc-cChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHH-cCCCc
Confidence            5788889988866542  222 24788888888885 477643 234467888888888877554433334443 47888


Q ss_pred             ceecCCc--hhhhh--hhccccccccccccccCCCCHH
Q 025644           86 NDVEGDS--WEELV--NTDIGHGAQSLRWFVWPNIDKD  119 (250)
Q Consensus        86 ~~L~~~s--~~dl~--~~~i~~g~~~L~~L~c~~ITD~  119 (250)
                      ++|+..+  +++..  -.-+-..+++|++|+-..||++
T Consensus       116 ~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~  153 (175)
T PF14580_consen  116 RVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE  153 (175)
T ss_dssp             -EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred             ceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence            8875433  22221  0112245677777776556554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=97.11  E-value=0.00037  Score=40.92  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=15.5

Q ss_pred             CCCCCeEecCCCCCcCHHHHHHHHH
Q 025644           30 CKSLKAVDISCCDRITAAGVSEFLL   54 (250)
Q Consensus        30 C~~L~~LdLS~C~~ITD~gl~~La~   54 (250)
                      |++|++|||++|. |||+|+.+|++
T Consensus         1 ~~~L~~L~l~~n~-i~~~g~~~l~~   24 (24)
T PF13516_consen    1 NPNLETLDLSNNQ-ITDEGASALAN   24 (24)
T ss_dssp             -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred             CCCCCEEEccCCc-CCHHHHHHhCC
Confidence            5677777777775 77777777763

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.78  E-value=0.0012  Score=44.49  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=18.1

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRIT   45 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~IT   45 (250)
                      +|++|+|++++|+|-  ...-..|++|+.||+++| +|+
T Consensus         2 ~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N-~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDL--PPELSNLPNLETLNLSNN-PIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSS-CCS
T ss_pred             cceEEEccCCCCccc--CchHhCCCCCCEEEecCC-CCC
Confidence            456666666655552  222235666666666665 344

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.66  E-value=0.0013  Score=38.61  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=19.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHh
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQ   28 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~   28 (250)
                      ++|+.|||++|+|||.|+.+|++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~~   24 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALAN   24 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhCC
Confidence            58999999999999999999985

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.39  E-value=0.0032  Score=42.49  Aligned_cols=39  Identities=33%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcH
Q 025644           31 KSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNH   72 (250)
Q Consensus        31 ~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd   72 (250)
                      ++|++|+|+++ +|++  |.....+|++|++|++++++.++-
T Consensus         1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCCCC
Confidence            58999999998 6886  555457899999999999987653

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.37  E-value=0.0039  Score=59.73  Aligned_cols=119  Identities=18%  Similarity=0.208  Sum_probs=67.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHH---hcCCCCCeEecCCCCCcCHHHHHHHHHhC---CCCCEEecCCCCCCcH---HHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFLLHC---HSLETLRCGGSPRSNH---AARR   76 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la---~~C~~L~~LdLS~C~~ITD~gl~~La~~C---~~L~~L~l~gC~~~dd---~al~   76 (250)
                      +.|+.+.++.+.|--.|+.+++   .+||+|+.|||.... .|-.|-.+|++-.   |+|+.|+++.|-..+.   +...
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            4567777777766666665444   357777777777754 6677777777543   4566677777755444   3344


Q ss_pred             HHhhhCCCCceecCCchhhhh----hhc--cccccccccccccC--CC--CHHHHHHHHh
Q 025644           77 CLGILKPKLNDVEGDSWEELV----NTD--IGHGAQSLRWFVWP--NI--DKDSIEMMST  126 (250)
Q Consensus        77 ~l~~~cp~L~~L~~~s~~dl~----~~~--i~~g~~~L~~L~c~--~I--TD~sL~~La~  126 (250)
                      ++...-|+|++|.....+...    +..  ++. -+.|..|+..  .+  .|+++.-++.
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~e~de~i~ei~~  322 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLGEKDEGIDEIAS  322 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccccccchhHHHHHH
Confidence            455556777776543322111    111  222 4455555432  23  5666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.29  E-value=0.00021  Score=50.16  Aligned_cols=60  Identities=17%  Similarity=0.186  Sum_probs=41.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      ++|+.|+|++|+|+.-.-. .-.++++|++|||+++ +|+.-.- ..-.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD-SFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTT-TTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHH-HHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence            4789999999965543222 3347899999999976 4542211 234678999999998875

...

>PLN03210 Resistant to P

Probab=96.19  E-value=0.0038  Score=67.20  Aligned_cols=59  Identities=22%  Similarity=0.282  Sum_probs=38.1

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      ++|+.|+|++| .++.-.  .-..++++|+.|+|++|.+++.-  -.- -++++|+.|+++||..
T Consensus       778 ~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~~L~~L--P~~-~~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCINLETL--PTG-INLESLESLDLSGCSR  837 (1153)
T ss_pred             ccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCCCcCee--CCC-CCccccCEEECCCCCc
Confidence            46888888887 433211  11346888888888888776531  111 1578888888888854

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=96.15  E-value=0.0052  Score=66.18  Aligned_cols=84  Identities=18%  Similarity=0.245  Sum_probs=44.1

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|+.-  -.-...+++|++|||++|.+++.-.  . ...+++|++|++++|.....- -..+ .++++|
T Consensus       611 ~~L~~L~L~~s~l~~L--~~~~~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~l-p~si-~~L~~L  683 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKL--WDGVHSLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVEL-PSSI-QYLNKL  683 (1153)
T ss_pred             cCCcEEECcCcccccc--ccccccCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCcccc-chhh-hccCCC
Confidence            5677777777744321  0012457777788887776543322  1 234677777777777432210 0011 245666


Q ss_pred             ceecCCchhhh
Q 025644           86 NDVEGDSWEEL   96 (250)
Q Consensus        86 ~~L~~~s~~dl   96 (250)
                      +.|+...|..+
T Consensus       684 ~~L~L~~c~~L  694 (1153)
T PLN03210        684 EDLDMSRCENL  694 (1153)
T ss_pred             CEEeCCCCCCc
Confidence            66655444333

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.0087  Score=58.94  Aligned_cols=61  Identities=16%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS   67 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC   67 (250)
                      .|+.+.|..|.|.+.|....++.||+++.||||+----.=..|..|++..|+|+.|+++.-
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N  182 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN  182 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence            3455555555666666655566666666666665543444556666666666666665543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.74  E-value=0.013  Score=35.86  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=14.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhc
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQM   29 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~   29 (250)
                      .+|++|||++|.|+|.|..+|++.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            355666666666666666666553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=95.72  E-value=0.01  Score=61.70  Aligned_cols=36  Identities=14%  Similarity=0.128  Sum_probs=19.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC   41 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C   41 (250)
                      ++|+.|+|++|+++..--..+..++++|++|||++|
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n  128 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN  128 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence            456666776665543222233345566666666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=0.011  Score=58.38  Aligned_cols=41  Identities=20%  Similarity=0.116  Sum_probs=22.5

Q ss_pred             CCCchHHHHHHHhhhhhhhccchHHHhhH----HHHHHHHHHHHHhc
Q 025644          187 PNELSMAEKFRLAFVERDTRLAPKRAKNA----RQHQRRAEREWMET  229 (250)
Q Consensus       187 ~~~l~~ae~fr~a~~~~~~r~~~kr~~n~----~~~~rr~~r~~~~~  229 (250)
                      ..+++.-+.  -||...=||...-..=|.    -+.+|+||=.|+..
T Consensus       335 ~n~ln~e~~--~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~~~  379 (505)
T KOG3207|consen  335 LNYLNKETD--TAKLLVIARISQLVKLNDVDISPNERRDAELYYLSK  379 (505)
T ss_pred             ccccccccc--ceeEEeeeehhhhhhhcccccChHHhhhhhhhHHhh
Confidence            345555555  566666666555444442    34667777666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=94.69  E-value=0.034  Score=57.93  Aligned_cols=63  Identities=14%  Similarity=0.132  Sum_probs=45.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS   70 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~   70 (250)
                      ..++.|||++++|+...-.. -.++++|++|||++|. ++..--..+..++++|++|+++++..+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~  131 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFT  131 (968)
T ss_pred             CcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccc
Confidence            46889999998776644333 3479999999999984 554333345567888888888888554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=94.58  E-value=0.053  Score=33.17  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.9

Q ss_pred             CCCCeEecCCCCCcCHHHHHHHHHhC
Q 025644           31 KSLKAVDISCCDRITAAGVSEFLLHC   56 (250)
Q Consensus        31 ~~L~~LdLS~C~~ITD~gl~~La~~C   56 (250)
                      +.|++|||+++. |+|+|+.+|++..
T Consensus         2 ~~L~~LdL~~N~-i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNNK-LGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCCC-CCHHHHHHHHHHh
Confidence            579999999984 9999999998754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.53  E-value=0.017  Score=53.16  Aligned_cols=79  Identities=22%  Similarity=0.250  Sum_probs=46.4

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHH--HHhCCCCCEEecCCCCC--CcHHHHHHHhh
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEF--LLHCHSLETLRCGGSPR--SNHAARRCLGI   80 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~L--a~~C~~L~~L~l~gC~~--~dd~al~~l~~   80 (250)
                      ++|+.|.+|-+ .--..||..++..||+|++|++|+. +|.|  |.+|  .+...+|.+|+++.|+.  .++ -+.-+..
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~d-yre~vf~  140 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD--LSTLRPLKELENLKSLDLFNCSVTNLDD-YREKVFL  140 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc--ccccchhhhhcchhhhhcccCCcccccc-HHHHHHH
Confidence            46667777666 3444566677777777777777774 4554  2222  23456677777777732  222 2445555


Q ss_pred             hCCCCcee
Q 025644           81 LKPKLNDV   88 (250)
Q Consensus        81 ~cp~L~~L   88 (250)
                      .+|+|+.|
T Consensus       141 ll~~L~~L  148 (260)
T KOG2739|consen  141 LLPSLKYL  148 (260)
T ss_pred             Hhhhhccc
Confidence            66666665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.96  E-value=0.14  Score=53.01  Aligned_cols=84  Identities=20%  Similarity=0.339  Sum_probs=50.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCH-HHHHHHH---------------------HhCCCCCEEe
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFL---------------------LHCHSLETLR   63 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD-~gl~~La---------------------~~C~~L~~L~   63 (250)
                      ++|+.|.++|-.+.+.-..++..+.|+|.+||||++. |++ .|+..|-                     -+..+|++||
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD  226 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD  226 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence            6788888888744333377788888888888888873 443 2333221                     1456777777


Q ss_pred             cCCCCCCcHH--HHHHHh--hhCCCCceecC
Q 025644           64 CGGSPRSNHA--ARRCLG--ILKPKLNDVEG   90 (250)
Q Consensus        64 l~gC~~~dd~--al~~l~--~~cp~L~~L~~   90 (250)
                      +|.=...++.  ..+.+.  ..+|+|+.|+.
T Consensus       227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDC  257 (699)
T ss_pred             ccccccccchHHHHHHHHhcccCccccEEec
Confidence            7755443332  222222  34677777643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.38  E-value=0.57  Score=44.48  Aligned_cols=169  Identities=15%  Similarity=0.151  Sum_probs=88.2

Q ss_pred             CCCCcCEEEccCCCCCHHHHHHHHhc-------------------------------------CCCCCeEecCCCC--Cc
Q 025644            4 ADSSWEILDISGSDVSDFGLVKVAQM-------------------------------------CKSLKAVDISCCD--RI   44 (250)
Q Consensus         4 ad~~L~~LnLsgC~ITD~gL~~la~~-------------------------------------C~~L~~LdLS~C~--~I   44 (250)
                      ++..++.++|||+-|...+...++..                                     ||+|+.+|||..-  .-
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            45677777888877776666666543                                     5666666666542  11


Q ss_pred             CHHHHHHHHHhCCCCCEEecCCCCCC---cH---HHHHHHh-----hhCCCCceecCCc--hhhhhhhcccccc---ccc
Q 025644           45 TAAGVSEFLLHCHSLETLRCGGSPRS---NH---AARRCLG-----ILKPKLNDVEGDS--WEELVNTDIGHGA---QSL  108 (250)
Q Consensus        45 TD~gl~~La~~C~~L~~L~l~gC~~~---dd---~al~~l~-----~~cp~L~~L~~~s--~~dl~~~~i~~g~---~~L  108 (250)
                      +..-+..+..+-..|++|.+++|..-   ..   .++.+++     ..-|+|+++....  .+.-.....+.+.   +.|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            22233333344556666666666221   11   1122233     2356666641100  0000000011111   234


Q ss_pred             ccccc--CCCCHHHHHHHH----hcCCCceecCC-CCCCCcCCccCCCCCCCCCcCCCccccccCcCcccccCCc
Q 025644          109 RWFVW--PNIDKDSIEMMS----TECPRIIVNPK-PSPFGFRGFEVPREAFPDITLDDPFVNDIDPSAWAVPRFA  176 (250)
Q Consensus       109 ~~L~c--~~ITD~sL~~La----~~Cp~L~~~~~-cs~~~~~g~~~~~~~l~~~~l~~~~~~~i~~~~w~~~~~~  176 (250)
                      +.+-.  ..|-++++.+++    ..|+.|++... ---||..|.+...-++|.-++    +.++.--+|-.+..+
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~----lrEL~lnDClls~~G  258 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL----LRELRLNDCLLSNEG  258 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch----hhhccccchhhcccc
Confidence            44332  368888888776    47999999332 234677888888888877655    455555555544433

>PLN03150 hypothetical protein; Provisional

Probab=91.19  E-value=0.24  Score=50.34  Aligned_cols=78  Identities=15%  Similarity=0.110  Sum_probs=48.5

Q ss_pred             cCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCce
Q 025644            8 WEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLND   87 (250)
Q Consensus         8 L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~   87 (250)
                      ++.|+|++++++-.--..+ ..+++|+.|||+++. ++. .+-.-..++++|++|+++++..+... -..+ ..+++|+.
T Consensus       420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~-l~g-~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l-~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNS-IRG-NIPPSLGSITSLEVLDLSYNSFNGSI-PESL-GQLTSLRI  494 (623)
T ss_pred             EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCc-ccC-cCChHHhCCCCCCEEECCCCCCCCCC-chHH-hcCCCCCE
Confidence            6788998885442211223 358899999999984 432 12222467899999999998654321 0112 35788888


Q ss_pred             ecC
Q 025644           88 VEG   90 (250)
Q Consensus        88 L~~   90 (250)
                      |+.
T Consensus       495 L~L  497 (623)
T PLN03150        495 LNL  497 (623)
T ss_pred             EEC
Confidence            754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.96  E-value=0.078  Score=48.91  Aligned_cols=51  Identities=20%  Similarity=0.287  Sum_probs=40.9

Q ss_pred             HHHHHHHh--cCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644           21 FGLVKVAQ--MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN   71 (250)
Q Consensus        21 ~gL~~la~--~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d   71 (250)
                      .|+..+++  -.|+|++|++|.-+.--..|+..++..||+|++|+++|-.+-+
T Consensus        53 ~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   53 VGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             cceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence            33334443  3789999999998778889999999999999999999885433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=89.86  E-value=0.099  Score=53.72  Aligned_cols=13  Identities=31%  Similarity=0.506  Sum_probs=8.9

Q ss_pred             cCCCCCeEecCCC
Q 025644           29 MCKSLKAVDISCC   41 (250)
Q Consensus        29 ~C~~L~~LdLS~C   41 (250)
                      .|++|+.||||+-
T Consensus       315 ftqkL~~LdLs~N  327 (873)
T KOG4194|consen  315 FTQKLKELDLSSN  327 (873)
T ss_pred             hcccceeEecccc
Confidence            3777777777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.71  E-value=0.24  Score=47.50  Aligned_cols=78  Identities=21%  Similarity=0.251  Sum_probs=57.3

Q ss_pred             cCEEEccCCCCCHHHHH-HHHhcCCCCCeEecCCCCCcCH-HHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            8 WEILDISGSDVSDFGLV-KVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         8 L~~LnLsgC~ITD~gL~-~la~~C~~L~~LdLS~C~~ITD-~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++.|.+-||.|...|-. .++..|..++.|||.+. +|+| .-|.+|.++.|.|++|+++.-+...+.  ..+..-..+|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl  123 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNL  123 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccce
Confidence            45677778877777655 68889999999999995 6887 558889999999999999755665552  2222233466


Q ss_pred             cee
Q 025644           86 NDV   88 (250)
Q Consensus        86 ~~L   88 (250)
                      ++|
T Consensus       124 ~~l  126 (418)
T KOG2982|consen  124 RVL  126 (418)
T ss_pred             EEE
Confidence            665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=89.54  E-value=0.07  Score=37.18  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCD   42 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~   42 (250)
                      ++|++|+|++|.|+...-. .-.++++|++|++++|.
T Consensus        25 ~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   25 PNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred             CCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence            7899999999966533222 34689999999999984

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.17  E-value=0.18  Score=50.11  Aligned_cols=63  Identities=19%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCC----CCeEecCCCCCcCHHHHHHHHHh---CCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKS----LKAVDISCCDRITAAGVSEFLLH---CHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~----L~~LdLS~C~~ITD~gl~~La~~---C~~L~~L~l~gC~~   69 (250)
                      .+|+.||++++.++|.|+..+..+.+.    |++|++.+|. +|+.|-..++..   +..|+.|++.-|..
T Consensus       115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhcccchhHHHHHhccc
Confidence            344555555555555555555544322    3445555553 555554444432   33344444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.25  E-value=0.19  Score=47.74  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=47.5

Q ss_pred             CCCEEecCCCCCCcHHHHHHHhhhCCCCceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee--
Q 025644           58 SLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV--  133 (250)
Q Consensus        58 ~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~--  133 (250)
                      +.+.||+.||.+.|-+    |-..+|.|++|. .|.-.+.+.+.-..|+.|+.|+..  .|.|--=....++-|+|++  
T Consensus        20 ~vkKLNcwg~~L~DIs----ic~kMp~lEVLs-LSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS----ICEKMPLLEVLS-LSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHHH----HHHhcccceeEE-eeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3444555555554442    334455555541 122222222223456666666542  2444333334457777777  


Q ss_pred             ---cCCCCCCCcCCccCCC---CCCCCC-cCCCccccccC
Q 025644          134 ---NPKPSPFGFRGFEVPR---EAFPDI-TLDDPFVNDID  166 (250)
Q Consensus       134 ---~~~cs~~~~~g~~~~~---~~l~~~-~l~~~~~~~i~  166 (250)
                         ||=|   +..|..--+   -.|||+ +||.--|++=+
T Consensus        95 L~ENPCc---~~ag~nYR~~VLR~LPnLkKLDnv~VteeE  131 (388)
T KOG2123|consen   95 LDENPCC---GEAGQNYRRKVLRVLPNLKKLDNVPVTEEE  131 (388)
T ss_pred             hccCCcc---cccchhHHHHHHHHcccchhccCccccHHH
Confidence               4422   333332222   257777 67766555443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.38  E-value=0.31  Score=48.38  Aligned_cols=66  Identities=21%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcC---CC-CCeEecCCCCCcCHHHHHHHHHhCCCC----CEEecCCCCCCcH
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMC---KS-LKAVDISCCDRITAAGVSEFLLHCHSL----ETLRCGGSPRSNH   72 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C---~~-L~~LdLS~C~~ITD~gl~~La~~C~~L----~~L~l~gC~~~dd   72 (250)
                      .++++|+|++|.||+.+...++.-.   +. +..|+++++ ++.|.|++.+....+.+    ++|+++.|+.++.
T Consensus       204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~  277 (478)
T KOG4308|consen  204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEK  277 (478)
T ss_pred             ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence            3455555555555555555444322   11 333454443 35555555555444333    4555555544444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.88  E-value=0.93  Score=43.19  Aligned_cols=84  Identities=23%  Similarity=0.343  Sum_probs=52.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCC-----------CCC----------cCHHHHHHHHHhCCCCCEEec
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISC-----------CDR----------ITAAGVSEFLLHCHSLETLRC   64 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~-----------C~~----------ITD~gl~~La~~C~~L~~L~l   64 (250)
                      .+.+.||+-||+++|.+   |.+.+|.|+.|.||-           |.+          |.|-.=..-.++.|+|++|-|
T Consensus        19 ~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            45678999999999965   567889999998884           322          222222222356777777766


Q ss_pred             CCCCC---CcHHHHHHHhhhCCCCceecCCc
Q 025644           65 GGSPR---SNHAARRCLGILKPKLNDVEGDS   92 (250)
Q Consensus        65 ~gC~~---~dd~al~~l~~~cp~L~~L~~~s   92 (250)
                      ...|-   ....-+..+-..+|+|++|.+..
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~  126 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVP  126 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhccCcc
Confidence            54332   22233444556688888885433

>PLN03150 hypothetical protein; Provisional

Probab=84.11  E-value=1.5  Score=44.67  Aligned_cols=36  Identities=6%  Similarity=0.166  Sum_probs=17.6

Q ss_pred             CCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644           32 SLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus        32 ~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      .+..|+|+++. ++.. +-.-..++++|+.|+++++..
T Consensus       419 ~v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~N~l  454 (623)
T PLN03150        419 FIDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSGNSI  454 (623)
T ss_pred             EEEEEECCCCC-cccc-CCHHHhCCCCCCEEECCCCcc
Confidence            35666666653 2211 111123466666666666643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=81.37  E-value=0.89  Score=24.77  Aligned_cols=11  Identities=27%  Similarity=0.480  Sum_probs=4.5

Q ss_pred             CCCeEecCCCC
Q 025644           32 SLKAVDISCCD   42 (250)
Q Consensus        32 ~L~~LdLS~C~   42 (250)
                      +|+.|+|++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            44555555553

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=81.05  E-value=2.5  Score=40.31  Aligned_cols=82  Identities=20%  Similarity=0.206  Sum_probs=61.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHH----hcCCCCCeEecCCCCCcCHHHHHHHHHhC---CCCCEEecCCCCCCcHHHH---
Q 025644            6 SSWEILDISGSDVSDFGLVKVA----QMCKSLKAVDISCCDRITAAGVSEFLLHC---HSLETLRCGGSPRSNHAAR---   75 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la----~~C~~L~~LdLS~C~~ITD~gl~~La~~C---~~L~~L~l~gC~~~dd~al---   75 (250)
                      .+|+.+-+..++|-..|+..++    .+|.+|+.|||.... .|-.|-.+|+...   +.|+.|+++.|-.++..+-   
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~  263 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence            5788888888889999988876    469999999999864 8888888888643   5688899999965554322   


Q ss_pred             -HHHhhhCCCCcee
Q 025644           76 -RCLGILKPKLNDV   88 (250)
Q Consensus        76 -~~l~~~cp~L~~L   88 (250)
                       ..-...-|+|+.|
T Consensus       264 ~~f~e~~~p~l~~L  277 (388)
T COG5238         264 RRFNEKFVPNLMPL  277 (388)
T ss_pred             HHhhhhcCCCcccc
Confidence             2223456888776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=80.93  E-value=0.67  Score=26.56  Aligned_cols=13  Identities=31%  Similarity=0.442  Sum_probs=7.5

Q ss_pred             CCCeEecCCCCCcC
Q 025644           32 SLKAVDISCCDRIT   45 (250)
Q Consensus        32 ~L~~LdLS~C~~IT   45 (250)
                      +|++||||+| ++|
T Consensus         1 ~L~~Ldls~n-~l~   13 (22)
T PF00560_consen    1 NLEYLDLSGN-NLT   13 (22)
T ss_dssp             TESEEEETSS-EES
T ss_pred             CccEEECCCC-cCE
Confidence            3566666666 444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=80.57  E-value=0.61  Score=49.26  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=26.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC   41 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C   41 (250)
                      +.|+.|||+.+++|+..   .-++|++|++||||+.
T Consensus       187 ~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN  219 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN  219 (1096)
T ss_pred             HHhhhhccchhhhhhhH---HHHhcccccccccccc
Confidence            34678899998888765   5567888999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.7 bits (134), Expect = 4e-09
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 9   EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETL---RCG 65
           E + +    V+D  L  +A+  K+ K + +S C+  +  G++     C +L+ L      
Sbjct: 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167

Query: 66  GSPRSNHA 73
               S H 
Sbjct: 168 VDDVSGHW 175

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 9   EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETL 62
           E+L ++ +  SD G+  V   C SL+ ++I  C     A ++       ++ +L
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN-ASKLETMRSL 511

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 6   SSWEILDISGS---DVSDFGLVKVAQMCKSLKAVDISCCDR-ITAAGVSEFLLHCHSLET 61
            + + LD+  S   DVS   L        SL +++ISC    ++ + +   +  C +L++
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 62  L---RCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSL 108
           L   R     +     +R      P+L ++    +   V  D+  G    
Sbjct: 216 LKLNRAVPLEKLATLLQRA-----PQLEELGTGGYTAEVRPDVYSGLSVA 260

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 13/143 (9%)

Query: 1   MSLADSSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSL 59
                   E+  +SG  D     L  V  +C  L  +++S    + +  + + L  C  L
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKL 316

Query: 60  ETLRCGGSPRSN---HAARRCLGILKPKLNDVEGDSWEELVN-TD-----IGHGAQSLRW 110
           + L              A  C  + + ++   E    E  V  T+     +  G   L  
Sbjct: 317 QRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376

Query: 111 FVW--PNIDKDSIEMMSTECPRI 131
            ++    +   ++  ++   P +
Sbjct: 377 VLYFCRQMTNAALITIARNRPNM 399

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 19/139 (13%)

Query: 6   SSWEILDISG--SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLR 63
           +S   L+IS   S+VS   L ++   C +LK++ ++    +    ++  L     LE L 
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELG 241

Query: 64  CGGSPRSNHA---------ARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRW--FV 112
            GG                   C  +    L+         L    +      L      
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELR--CLSGFWDAVPAYLPA--VYSVCSRLTTLNLS 297

Query: 113 WPNIDKDSIEMMSTECPRI 131
           +  +    +  +  +CP++
Sbjct: 298 YATVQSYDLVKLLCQCPKL 316

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 21/143 (14%)

Query: 5   DSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRC 64
             S   +      +++ GLV V+  C  L++V +  C ++T A +     +  ++   R 
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRL 404

Query: 65  GGSPRSNHA--------------ARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLRW 110
                                     C  + +  L+ +  D     V   IG  A+ +  
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDK----VFEYIGTYAKKMEM 460

Query: 111 --FVWPNIDKDSIEMMSTECPRI 131
               +       +  + + C  +
Sbjct: 461 LSVAFAGDSDLGMHHVLSGCDSL 483

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 20/141 (14%), Positives = 48/141 (34%), Gaps = 15/141 (10%)

Query: 2   SLADSSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLET 61
            L     +  D    +  D G   + + CK L+ + +S    +T         +   +E 
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEM 460

Query: 62  LRCGGSPRSN----HAARRCLGILKPKLND--VEGDSWEELVNTDIGHGAQSLR--WFVW 113
           L    +  S+    H    C  + K ++ D      +             +++R  W   
Sbjct: 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA-----SKLETMRSLWMSS 515

Query: 114 PNIDKDSIEMMSTECPRIIVN 134
            ++   + +++  + P++ V 
Sbjct: 516 CSVSFGACKLLGQKMPKLNVE 536

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 1/69 (1%)

Query: 9   EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68
             L+I      D  L+  A   ++++++ +S C  ++             L         
Sbjct: 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVIDERG 542

Query: 69  RSNHAARRC 77
             +     C
Sbjct: 543 APDSRPESC 551

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 9   EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68
             + +     SD GL++ ++ C +L+ +++  C   +   ++  +    SL  L   G  
Sbjct: 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGY- 523

Query: 69  RSNHAARRCLGILKPKLN 86
           R++   +  + + +P  N
Sbjct: 524 RASMTGQDLMQMARPYWN 541

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 9   EILDISGSDVSDFGLVKVAQM-CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 67
           + +      VSD  L ++A+     L+ + +  C   T  G+   + HC  ++TL    S
Sbjct: 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174

Query: 68  PRSNHAARRCLGILK 82
             S    +    + +
Sbjct: 175 SFSEKDGKWLHELAQ 189

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 6e-07
 Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 9   EILDISGSD---VSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCG 65
           E+L+   ++   +S   L  +A+ C+SL +V +   + +   G  +   +          
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254

Query: 66  GSPRSNHAARRCLGILKPKLNDVEGDSWEELVNTDIGHGAQSLR 109
                       +   K     +      E+    +   A  +R
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM--PILFPFAAQIR 296

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 3/79 (3%)

Query: 9   EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL--HCHSLETLRCGG 66
           + L++ G   S+  +        SL+ + +    R +  G     +     ++E +    
Sbjct: 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQMARPYWNIELIPSRR 549

Query: 67  SPRSNHAARRCLGILKPKL 85
            P  N             +
Sbjct: 550 VPEVNQQGEIREMEHPAHI 568

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 18  VSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETL---RCGGSPRS-NHA 73
           ++D GL  + Q   +++ + +      +  G+ EF   C +L+ L    C  S R+   A
Sbjct: 450 LTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508

Query: 74  ARRC 77
             + 
Sbjct: 509 VTKL 512

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 10  ILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS 67
           +  +  S +    +  +      ++ +D+      T       +  C +LE L     
Sbjct: 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC-TLIQKCPNLEVLETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 9   EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCD----------RITAAGVSEFLLHCHS 58
           E+L+     + D GL  +AQ CK LK + I               ++  G+      C  
Sbjct: 321 EVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379

Query: 59  LETL 62
           LE +
Sbjct: 380 LEYM 383

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 2/72 (2%)

Query: 9   EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP 68
             LD+  + +       + Q C +L+ ++      I   G+     +C  L+ LR     
Sbjct: 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGA 353

Query: 69  RSNHAARRCLGI 80
                      +
Sbjct: 354 DEQGMEDEEGLV 365

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 9   EILDISG-SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLH-CHSLETLRCGG 66
             L++SG S  S+F L  +   C  L  +++S C   T   V   + H   ++  L   G
Sbjct: 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204

Query: 67  SPRS------NHAARRC 77
             ++      +   RRC
Sbjct: 205 YRKNLQKSDLSTLVRRC 221

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 9   EILDISG--SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLR 63
             L++SG   ++    L  + + C +L  +D+S    +      E     + L+ L 
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLS 253

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 9   EILDISG-SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGG 66
             LD+S    + +    +  Q    L+ + +S C  I    + E L    +L+TL+  G
Sbjct: 225 VHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 9   EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETL 62
           + L + G  +SD  +  +A+   +L  +++S C   +   +   L  C  L+ L
Sbjct: 121 QNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 9   EILDISG-SDVSDFGLVK-VAQMCKSLKAVDIS-CCDRITAAGVSEFLLHCHSLETLRCG 65
           + L++S   D ++  +   VA + +++  +++S     +  + +S  +  C +L  L   
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230

Query: 66  GSPR 69
            S  
Sbjct: 231 DSVM 234

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 9   EILDISGSD-VSDFGLVKVAQMC---KSLKAVDISCCDRITAAGVSEFLLHCHSLETLRC 64
           E + +     + D  L +++Q+    KS+  ++I  C  +T  G+   L H  +L+ L  
Sbjct: 88  EKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFL 146

Query: 65  GGSPRSNHAARRCLGILK--PKLN 86
              P      +         P L 
Sbjct: 147 SDLPGVKEKEKIVQAFKTSLPSLE 170

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 7/64 (10%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 9   EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAG---VSEFLLHCHSLETLRCG 65
           + +D + S +   G   +    + ++ + +  C  I       +S+      S+  +   
Sbjct: 64  QAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122

Query: 66  GSPR 69
               
Sbjct: 123 SCGN 126

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 69/202 (34%)

Query: 10  ILDISGSDVSDFGLVKVAQM-CKSLKAV---DISCCDRITAAGVSEFLLHCHSL-----E 60
           +L     +V +        + CK L  +        D ++AA  +   L  HS+     E
Sbjct: 249 VLL----NVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 61  TLR-----------------CGGSPR---------SNHAAR--RCLGILKPKLNDVEGDS 92
                                  +PR          +  A       +   KL  +   S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 93  WEELVNTDIGHGAQSLRWF-------------VWPNIDKDSIEMMSTECPR---IIVNPK 136
              L   +       L  F             +W ++ K  + ++  +  +   +   PK
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 137 PSPFGFRGFEVPREAFPDITLD 158
            S              P I L+
Sbjct: 423 ESTIS----------IPSIYLE 434

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.5
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.48
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.03
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.91
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.5
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.31
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.03
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.9
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.83
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.53
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.4
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.39
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.36
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.33
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.29
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.11
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.07
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.03
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.02
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.99
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	96.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	96.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	96.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	96.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	96.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	96.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	96.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.74
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	96.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	96.68
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.65
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.59
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	96.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	96.55
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.5
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.44
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	96.44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.38
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.31
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.2
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.2
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	96.16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	96.12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.1
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.1
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	96.09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	96.04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.01
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.0
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	95.94
3e6j_A	229	Variable lymphocyte receptor diversity region; var	95.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	95.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	95.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	95.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	95.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	95.57
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	95.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	95.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	95.36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	95.3
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	95.29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	95.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	95.14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	95.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.11
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.64
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	94.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	94.27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	94.26
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	94.2
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	94.19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	94.13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	94.13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	94.1
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	94.07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	93.89
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	93.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	93.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	93.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	93.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	93.36
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	92.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	91.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	91.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	89.18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	87.51
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	84.63

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.76  E-value=3.4e-19  Score=152.09  Aligned_cols=106  Identities=10%  Similarity=0.104  Sum_probs=93.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHHHhhhC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCLGILK   82 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~l~~~c   82 (250)
                      -.|+.|||++|.|||.|+..+ .+|++|++|+|++|.+|||.|+..|+.   .|++|++|++++|+.++|.++.+|+ .|
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence            469999999999999999999 589999999999999999999999998   4899999999999988888898887 47


Q ss_pred             CCCceecCCchhhhhhhccccccccccccccCCCCHHHH--HHHHhcCCCcee
Q 025644           83 PKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSI--EMMSTECPRIIV  133 (250)
Q Consensus        83 p~L~~L~~~s~~dl~~~~i~~g~~~L~~L~c~~ITD~sL--~~La~~Cp~L~~  133 (250)
                      |+|++|+.                    -.|++|||.++  ..+...-|++++
T Consensus       139 ~~L~~L~L--------------------~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          139 RNLKYLFL--------------------SDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             TTCCEEEE--------------------ESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CCCCEEEC--------------------CCCCCCCchHHHHHHHHHHCCCcEE
Confidence            88877632                    25899999874  667788898887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.64  E-value=8.3e-16  Score=135.57  Aligned_cols=161  Identities=17%  Similarity=0.224  Sum_probs=124.4

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCC-CCCEEecCCCC-CCcHHHHHHHhhhC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCH-SLETLRCGGSP-RSNHAARRCLGILK   82 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~-~L~~L~l~gC~-~~dd~al~~l~~~c   82 (250)
                      ++|++|+|++| .+||.++..+..+|++|++|+|++|.++++.++..+..+|+ +|++|++++|. ..++..+..+...+
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~  221 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC  221 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence            68899999999 89999999888899999999999998899999999999999 99999999995 45555566666779


Q ss_pred             CCCceecCCchhhh---hhhccccccccccccc---cCCCCHHHHHHHHhcCCCcee--cCCCCCCCcCCccCCCCCCCC
Q 025644           83 PKLNDVEGDSWEEL---VNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV--NPKPSPFGFRGFEVPREAFPD  154 (250)
Q Consensus        83 p~L~~L~~~s~~dl---~~~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~--~~~cs~~~~~g~~~~~~~l~~  154 (250)
                      |+|+.|+...+..+   ....+ .++++|+.|+   |..++|.++..+. +||+|+.  ..+|  ++..+.......+|.
T Consensus       222 ~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~~~~~l~~~l~~  297 (336)
T 2ast_B          222 PNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPH  297 (336)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTT
T ss_pred             CCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHHHHHHHHhhCcc
Confidence            99999866554322   22223 3457788774   7789999887776 5999999  4445  555555544457899


Q ss_pred             CcCCCccccccCcCcc
Q 025644          155 ITLDDPFVNDIDPSAW  170 (250)
Q Consensus       155 ~~l~~~~~~~i~~~~w  170 (250)
                      +.+++..+..+.|...
T Consensus       298 L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          298 LQINCSHFTTIARPTI  313 (336)
T ss_dssp             SEESCCCSCCTTCSSC
T ss_pred             eEEecccCccccCCcc
Confidence            9999999998888653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.62  E-value=3.3e-16  Score=133.66  Aligned_cols=81  Identities=20%  Similarity=0.276  Sum_probs=72.6

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhc---CCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHH--HHHHh
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAA--RRCLG   79 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~---C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~a--l~~l~   79 (250)
                      ++|+.|+|++| .|||.||..|+..   |++|++||||+|.+|||.|+.+|+ +|++|++|++++|+.+++.+  ...+.
T Consensus        85 ~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~  163 (176)
T 3e4g_A           85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFK  163 (176)
T ss_dssp             SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHH
T ss_pred             CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHH
Confidence            68999999999 9999999999984   899999999999999999999998 59999999999998666543  56677


Q ss_pred             hhCCCCce
Q 025644           80 ILKPKLND   87 (250)
Q Consensus        80 ~~cp~L~~   87 (250)
                      ...|+++.
T Consensus       164 ~~lP~l~V  171 (176)
T 3e4g_A          164 TSLPSLEL  171 (176)
T ss_dssp             HHCTTCEE
T ss_pred             HHCCCcEE
Confidence            88999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.50  E-value=6.1e-14  Score=132.40  Aligned_cols=147  Identities=19%  Similarity=0.135  Sum_probs=82.7

Q ss_pred             CCcCEEEccC----------C-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCC---CCCCc
Q 025644            6 SSWEILDISG----------S-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGG---SPRSN   71 (250)
Q Consensus         6 ~~L~~LnLsg----------C-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~g---C~~~d   71 (250)
                      ++|+.|+|++          | .||+.|+..++.+|++|++|++ +|.++|+.++..++.+|++|++|++++   |...+
T Consensus       342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~  420 (592)
T 3ogk_B          342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERIT  420 (592)
T ss_dssp             TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred             CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence            4577777773          6 6777777777777777777777 556677777777766666666666653   32222


Q ss_pred             H----HHHHHHhhhCCCCceecC---------------------------Cc--hhhhhhhccccccccccccc---cCC
Q 025644           72 H----AARRCLGILKPKLNDVEG---------------------------DS--WEELVNTDIGHGAQSLRWFV---WPN  115 (250)
Q Consensus        72 d----~al~~l~~~cp~L~~L~~---------------------------~s--~~dl~~~~i~~g~~~L~~L~---c~~  115 (250)
                      +    .++..+...|++|+.|+.                           ..  ..+.....+..+|++|+.|.   |+ 
T Consensus       421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-  499 (592)
T 3ogk_B          421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-  499 (592)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-
T ss_pred             CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-
Confidence            1    233444444555555433                           21  11111222334555566653   44 


Q ss_pred             CCHHHHHHHHhcCCCcee--cCCCCCCCcCCccCCCCCCCCC
Q 025644          116 IDKDSIEMMSTECPRIIV--NPKPSPFGFRGFEVPREAFPDI  155 (250)
Q Consensus       116 ITD~sL~~La~~Cp~L~~--~~~cs~~~~~g~~~~~~~l~~~  155 (250)
                      |||.++..+..+||+|+.  ...|. ++..|.+....++|.+
T Consensus       500 l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l  540 (592)
T 3ogk_B          500 FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYW  540 (592)
T ss_dssp             CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred             CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence            666666666666666666  44454 5555555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.48  E-value=2.4e-13  Score=119.77  Aligned_cols=134  Identities=13%  Similarity=0.168  Sum_probs=90.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|++.++..+..+|++|++|+|++| ++++.+...++. |++|++|++++|...++.++..+...||+|
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            567888888887888777777777888888888887 477777777765 788888888888555554455556667888


Q ss_pred             ceecCCchhhhh---hhccccccc-cccccc---cC-CCCHHHHHHHHhcCCCcee--cCCCCCCC
Q 025644           86 NDVEGDSWEELV---NTDIGHGAQ-SLRWFV---WP-NIDKDSIEMMSTECPRIIV--NPKPSPFG  141 (250)
Q Consensus        86 ~~L~~~s~~dl~---~~~i~~g~~-~L~~L~---c~-~ITD~sL~~La~~Cp~L~~--~~~cs~~~  141 (250)
                      ++|+...+..+.   ......+++ +|+.|+   |. .++|.++..+..+||+|+.  ...|..++
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence            877554432222   222334555 666664   44 6777777777777888877  44444343

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.48  E-value=4.3e-14  Score=133.47  Aligned_cols=126  Identities=20%  Similarity=0.282  Sum_probs=100.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCC----------CCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISC----------CDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAAR   75 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~----------C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al   75 (250)
                      ++|+.|+|+ ..++|.|+..++.+|++|++|+|++          |..+|+.|+..++.+|++|++|++ +|...++.+.
T Consensus       318 ~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~  395 (592)
T 3ogk_B          318 PNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESL  395 (592)
T ss_dssp             TTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHH
T ss_pred             cCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHH
Confidence            689999999 5799999999999999999999995          999999999999999999999999 6766677788


Q ss_pred             HHHhhhCCCCceecCC------chhhh----hhhccccccccccccc---cC-CCCHHHHHHHHhcCCCcee
Q 025644           76 RCLGILKPKLNDVEGD------SWEEL----VNTDIGHGAQSLRWFV---WP-NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        76 ~~l~~~cp~L~~L~~~------s~~dl----~~~~i~~g~~~L~~L~---c~-~ITD~sL~~La~~Cp~L~~  133 (250)
                      ..++..||+|++|+..      .+++.    ....+..+|++|+.|.   |. .++|.++..+...||+|+.
T Consensus       396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~  467 (592)
T 3ogk_B          396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW  467 (592)
T ss_dssp             HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred             HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence            8999999999998553      22221    1222345566777765   24 3777777777777777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.42  E-value=2.1e-13  Score=128.55  Aligned_cols=127  Identities=14%  Similarity=0.175  Sum_probs=75.0

Q ss_pred             CCcCEEEc--------cCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecC-----CCCCCc
Q 025644            6 SSWEILDI--------SGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCG-----GSPRSN   71 (250)
Q Consensus         6 ~~L~~LnL--------sgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~-----gC~~~d   71 (250)
                      ++|+.|+|        .+| .|||.|+..++.+|++|++|++ +|.++|+.++..++.+||+|++|+++     +|..++
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~  416 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT  416 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence            45666666        334 6677777666666666666633 45566777777776667777777766     554444


Q ss_pred             ----HHHHHHHhhhCCCCceecCCc-hhhhhhhccccccccccccc--cCCCCHHHHHHHHhcCCCcee
Q 025644           72 ----HAARRCLGILKPKLNDVEGDS-WEELVNTDIGHGAQSLRWFV--WPNIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        72 ----d~al~~l~~~cp~L~~L~~~s-~~dl~~~~i~~g~~~L~~L~--c~~ITD~sL~~La~~Cp~L~~  133 (250)
                          +.++..+...|++|+.|+..+ ..+.....++.++++|++|.  +-.|||.++..++.+||+|+.
T Consensus       417 ~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~  485 (594)
T 2p1m_B          417 LEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK  485 (594)
T ss_dssp             CCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred             CCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence                455555666666666664422 22222233444455666654  234666666666666666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.38  E-value=3.1e-12  Score=120.51  Aligned_cols=110  Identities=14%  Similarity=0.132  Sum_probs=50.8

Q ss_pred             HHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCceecCCch--hhhh
Q 025644           20 DFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSW--EELV   97 (250)
Q Consensus        20 D~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~~s~--~dl~   97 (250)
                      |.|+..+..+|++|++|+|++  ++||.++..++.++++|++|++++|..++ .+...+...||+|+.|+...+  .+..
T Consensus       421 ~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~L~~L~L~~n~~~~~~  497 (594)
T 2p1m_B          421 DIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSD-LGMHHVLSGCDSLRKLEIRDCPFGDKA  497 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSH-HHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred             hhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcH-HHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence            445555555555555555544  45555555555555555555555554322 233344444555555433221  1112


Q ss_pred             hhccccccccccccc---cCCCCHHHHHHHHhcCCCcee
Q 025644           98 NTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        98 ~~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~  133 (250)
                      ...+..++++|+.|.   |+. |+.++..++..+|+|++
T Consensus       498 ~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i  535 (594)
T 2p1m_B          498 LLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNV  535 (594)
T ss_dssp             HHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEE
T ss_pred             HHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEE
Confidence            222334444555442   332 55555555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=4.7e-10  Score=103.63  Aligned_cols=126  Identities=8%  Similarity=0.079  Sum_probs=83.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHH----hCCCCCEEecCCCCCCcHHHHHHHh--
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL----HCHSLETLRCGGSPRSNHAARRCLG--   79 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~----~C~~L~~L~l~gC~~~dd~al~~l~--   79 (250)
                      .+|+.|||++|.|+|.|+..++..+++|++|||++| +|||.|+..|+.    .+++|++|++++|..++.. ...++  
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG-VAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH-HHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH-HHHHHHH
Confidence            477888888888888888888877778888888887 588888887774    3677888888888655443 33333  


Q ss_pred             -hhCCCCceecCCc--hhhhhhhccc---ccccccccccc--CCCCHHHHHHHHh---cCCCcee
Q 025644           80 -ILKPKLNDVEGDS--WEELVNTDIG---HGAQSLRWFVW--PNIDKDSIEMMST---ECPRIIV  133 (250)
Q Consensus        80 -~~cp~L~~L~~~s--~~dl~~~~i~---~g~~~L~~L~c--~~ITD~sL~~La~---~Cp~L~~  133 (250)
                       ..+++|++|+...  +.+.....++   ..+.+|+.|+.  -.|||.+...++.   .+|.|+.
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~  243 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLEL  243 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCE
Confidence             3467777774433  3333332232   23346777653  3688887777654   5677777

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.03  E-value=1.3e-09  Score=98.70  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=30.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcC------------CCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMC------------KSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRS   70 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C------------~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~   70 (250)
                      ++|++|+|++|.|++.+...++...            ++|++|+|++| ++++.++..++.   ++++|++|++++|...
T Consensus       122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  200 (386)
T 2ca6_A          122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  200 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            3455555555555555544444332            45555555554 255544444333   4555555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.97  E-value=2.7e-09  Score=98.49  Aligned_cols=119  Identities=11%  Similarity=0.075  Sum_probs=92.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHh----cCCCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQ----MCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCL   78 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~----~C~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l   78 (250)
                      .+|+.|||++|.|+|.|+..++.    .+++|++|||++| +||+.|+..++   ..+++|++|++++|...+.. ...|
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g-~~~L  203 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG-LELL  203 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH-HHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH-HHHH
Confidence            36899999999999999999885    4688999999999 59999999997   57899999999999866654 3444


Q ss_pred             h---hhCCCCceecCCc--hhhhhhhcccc---cccccccccc--CCCCHHHHHHHHh
Q 025644           79 G---ILKPKLNDVEGDS--WEELVNTDIGH---GAQSLRWFVW--PNIDKDSIEMMST  126 (250)
Q Consensus        79 ~---~~cp~L~~L~~~s--~~dl~~~~i~~---g~~~L~~L~c--~~ITD~sL~~La~  126 (250)
                      .   ..+++|+.|+...  +.+.....++.   .+++|+.|+.  -.|+|.+...+..
T Consensus       204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            4   4467899985543  34443333443   4567888863  4799999999974

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.96  E-value=4.6e-09  Score=87.47  Aligned_cols=84  Identities=13%  Similarity=0.043  Sum_probs=68.7

Q ss_pred             CCCcCEEEccCC-CCCHHHHHHHHhc---CCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHH
Q 025644            5 DSSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRC   77 (250)
Q Consensus         5 d~~L~~LnLsgC-~ITD~gL~~la~~---C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~   77 (250)
                      .++|+.|+|++| .|+|.|+..++..   ++.|++|||++|. |+|.|+..|+.   .++.|++|++++|...+.. ...
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g-~~~  112 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-ILA  112 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-HHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH-HHH
Confidence            378999999999 9999999999874   7899999999995 99999998875   5689999999999877764 344


Q ss_pred             Hh---hhCCCCceecC
Q 025644           78 LG---ILKPKLNDVEG   90 (250)
Q Consensus        78 l~---~~cp~L~~L~~   90 (250)
                      |+   ..++.|++|+.
T Consensus       113 l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          113 LVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCCCceEEEe
Confidence            44   33556777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.92  E-value=6.9e-09  Score=94.80  Aligned_cols=126  Identities=17%  Similarity=0.189  Sum_probs=79.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHh----cCCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQ----MCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRCL   78 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~----~C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~l   78 (250)
                      ++|+.|+|++|.|+|.|+..++.    .+++|++|+|++| +||+.|+..++.   +|++|++|+++++...+. +...+
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l  304 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDE-GARLL  304 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH-HHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchH-HHHHH
Confidence            67888888888888888877765    4788888888888 688888666654   588888888888865444 23333


Q ss_pred             hh----hCCCCceecCCch--hhhhhhccc---ccccccccccc--CCCCHHHHHHHHhc----CCCcee
Q 025644           79 GI----LKPKLNDVEGDSW--EELVNTDIG---HGAQSLRWFVW--PNIDKDSIEMMSTE----CPRIIV  133 (250)
Q Consensus        79 ~~----~cp~L~~L~~~s~--~dl~~~~i~---~g~~~L~~L~c--~~ITD~sL~~La~~----Cp~L~~  133 (250)
                      ..    ..++|++|+...+  .+.....++   ..+++|+.|+.  -.|+|.+...+...    +++|+.
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  374 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV  374 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence            33    3357777754432  121111121   23456666642  25777776666542    556666

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.92  E-value=2.6e-09  Score=97.59  Aligned_cols=62  Identities=23%  Similarity=0.306  Sum_probs=31.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcC----CCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMC----KSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSP   68 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C----~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~   68 (250)
                      ++|++|+|++|.|+|.|+..++..+    ++|++|+|++|. +++.|...++   ..|++|++|++++|.
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred             CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc
Confidence            4555555655555555555555432    355555555553 5544433333   234555555555553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.91  E-value=6.8e-09  Score=93.88  Aligned_cols=83  Identities=10%  Similarity=0.090  Sum_probs=47.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHH---hcCCCCCeEecCCCCCcCHHHHHHHHHhC------------CCCCEEecCCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFLLHC------------HSLETLRCGGSPRS   70 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la---~~C~~L~~LdLS~C~~ITD~gl~~La~~C------------~~L~~L~l~gC~~~   70 (250)
                      .+|++|+|++|.|++.|+..++   ..|++|++|+|++|. +++.|...++...            ++|++|++++|..+
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            5666666666666666555443   346666666666663 6666665555433            66666666666554


Q ss_pred             cHHHHHHHh---hhCCCCceecC
Q 025644           71 NHAARRCLG---ILKPKLNDVEG   90 (250)
Q Consensus        71 dd~al~~l~---~~cp~L~~L~~   90 (250)
                      +... ..++   ..+++|++|+.
T Consensus       173 ~~~~-~~l~~~l~~~~~L~~L~L  194 (386)
T 2ca6_A          173 NGSM-KEWAKTFQSHRLLHTVKM  194 (386)
T ss_dssp             GGGH-HHHHHHHHHCTTCCEEEC
T ss_pred             cHHH-HHHHHHHHhCCCcCEEEC
Confidence            3322 2211   24556666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=9.1e-08  Score=79.56  Aligned_cols=82  Identities=20%  Similarity=0.236  Sum_probs=66.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhc---CCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEec--CCCCCCcHHHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQM---CKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRC--GGSPRSNHAARRC   77 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~---C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l--~gC~~~dd~al~~   77 (250)
                      .+|++|+|++|.|+|.|...|+..   ++.|++|||++| +|+|.|+.+|+.   .++.|++|++  +++...++. ...
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g-~~~  142 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV-EME  142 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH-HHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH-HHH
Confidence            789999999999999999988865   688999999998 599999999985   4679999999  777766664 334


Q ss_pred             Hhh---hCCCCceec
Q 025644           78 LGI---LKPKLNDVE   89 (250)
Q Consensus        78 l~~---~cp~L~~L~   89 (250)
                      ++.   .++.|++|+
T Consensus       143 l~~~L~~n~~L~~L~  157 (185)
T 1io0_A          143 IANMLEKNTTLLKFG  157 (185)
T ss_dssp             HHHHHHHCSSCCEEE
T ss_pred             HHHHHHhCCCcCEEe
Confidence            443   346666664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.63  E-value=9.6e-08  Score=86.09  Aligned_cols=65  Identities=14%  Similarity=0.178  Sum_probs=40.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhc----CCCCCeEecCCCCCcCHHHHHHHHHh---CC-CCCEEecCCCCCCc
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQM----CKSLKAVDISCCDRITAAGVSEFLLH---CH-SLETLRCGGSPRSN   71 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~----C~~L~~LdLS~C~~ITD~gl~~La~~---C~-~L~~L~l~gC~~~d   71 (250)
                      .+|+.|+|++|.|++.+...++..    +++|++|||++| ++++.|+..++..   .+ +|++|++++|..++
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence            467777777776666666665544    456777777776 4666666665543   33 67777777775433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.50  E-value=9.5e-08  Score=88.48  Aligned_cols=54  Identities=22%  Similarity=0.155  Sum_probs=27.9

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHH-hCCCCCEEecC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLL-HCHSLETLRCG   65 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~-~C~~L~~L~l~   65 (250)
                      ++|+.|+|+|| +++-..   +  ..++|++|+|+.| ++++.++..|+. .+|+|++|+|+
T Consensus       172 P~L~~L~L~g~~~l~l~~---~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGK---K--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             TTCCEEEEECCBTCBCCS---C--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             CCCcEEEEeCCCCceecc---c--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe
Confidence            45666666655 332111   1  2555666666544 356666655554 45666666553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.46  E-value=2.3e-07  Score=83.62  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=31.7

Q ss_pred             cCEEEccCCCCCHHHHHHHH---hcCC-CCCeEecCCCCCcCHHHHHHHHHh----CCCCCEEecCCCCC
Q 025644            8 WEILDISGSDVSDFGLVKVA---QMCK-SLKAVDISCCDRITAAGVSEFLLH----CHSLETLRCGGSPR   69 (250)
Q Consensus         8 L~~LnLsgC~ITD~gL~~la---~~C~-~L~~LdLS~C~~ITD~gl~~La~~----C~~L~~L~l~gC~~   69 (250)
                      |++|||++|.|++.+...++   .+++ +|++|||++| +|++.+...++..    +++|++|++++|..
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            55666666555555543333   2344 5666666655 4555554444443    35555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.34  E-value=5.1e-07  Score=70.89  Aligned_cols=122  Identities=14%  Similarity=0.080  Sum_probs=78.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|++++|.|+|..+......+++|++|++++| ++++-   ....++++|++|++++|..++.  +..+...+++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPNL   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTTC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccch--HHHHhhhCCCC
Confidence            578999999998886555555567899999999998 46654   3345688999999999876652  12334458889


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHHH--HHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSI--EMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL--~~La~~Cp~L~~  133 (250)
                      ++|+...  +.++.....-.++++|+.|+..  .|++..-  ......+|+|+.
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            8885433  2332221233567778887532  3443322  123457888876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.31  E-value=3.9e-08  Score=78.85  Aligned_cols=122  Identities=10%  Similarity=0.044  Sum_probs=79.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|+|+|..+......+++|++|+|++|. |++-   ....++++|++|++++|..++.  +..+...+|+|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG--LDMLAEKLPNL   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC--CCHHHHHCTTC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH--HHHHHhhCCCC
Confidence            6799999999988866565555778999999999986 7664   3445689999999999976552  12334468999


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHHH--HHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSI--EMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL--~~La~~Cp~L~~  133 (250)
                      ++|+...  +.++.....-.++++|+.|+..  .|++..-  ......+|+|+.
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            9985433  2222211222456777777532  2332211  224457778777

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.26  E-value=1.5e-06  Score=68.23  Aligned_cols=102  Identities=12%  Similarity=0.107  Sum_probs=69.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|++.   .....+++|++|+|++|. |++. +..+..++++|++|++++|..++-.... .-..+|+|
T Consensus        42 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~-~~~~l~~L  115 (149)
T 2je0_A           42 EELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIE-PLKKLENL  115 (149)
T ss_dssp             TTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSCCCSHHHHG-GGGGCTTC
T ss_pred             CCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCcCCChHHHH-HHhhCCCC
Confidence            6899999999977765   334568999999999985 6553 5667778999999999999877643222 23468899


Q ss_pred             ceecCCc--hhhhhh--hcccccccccccccc
Q 025644           86 NDVEGDS--WEELVN--TDIGHGAQSLRWFVW  113 (250)
Q Consensus        86 ~~L~~~s--~~dl~~--~~i~~g~~~L~~L~c  113 (250)
                      ++|+...  +.++..  ...-.++++|+.|+.
T Consensus       116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            9985543  222221  012345667777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.26  E-value=6.6e-06  Score=70.98  Aligned_cols=83  Identities=12%  Similarity=0.121  Sum_probs=66.4

Q ss_pred             CCCcCEEEccCC-CCCHHHHHHHHhc---CCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHH
Q 025644            5 DSSWEILDISGS-DVSDFGLVKVAQM---CKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRC   77 (250)
Q Consensus         5 d~~L~~LnLsgC-~ITD~gL~~la~~---C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~   77 (250)
                      |..|+.|||+++ +|+|.|.++|++.   -..|+.|+|++| +|+|.|..+|++   .-..|++|+|+++.+.++. ..+
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a~a  117 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LAR  117 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-HHH
Confidence            588999999997 9999999999875   467999999999 599999999984   5688999999988777664 455


Q ss_pred             HhhhC---CCCceec
Q 025644           78 LGILK---PKLNDVE   89 (250)
Q Consensus        78 l~~~c---p~L~~L~   89 (250)
                      |+.-+   ..|+.|.
T Consensus       118 la~aL~~N~tL~~L~  132 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFK  132 (197)
T ss_dssp             HHHHTTTTCCCSEEE
T ss_pred             HHHHHhhCCceeEEE
Confidence            55433   2355553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.23  E-value=1.8e-06  Score=79.82  Aligned_cols=73  Identities=15%  Similarity=0.153  Sum_probs=51.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHh--cCCCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHHhh
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQ--MCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCLGI   80 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~--~C~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l~~   80 (250)
                      ++|++|+|++|+|+|.+...++.  .+|+|++||||++ +|+|.|..+|+   .++++|+.|++++|. +++.++.+|..
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~  329 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQK  329 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHH
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHH
Confidence            57777777777777777777765  4677788888765 57777777776   447778888877775 34445556655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.19  E-value=7e-07  Score=73.73  Aligned_cols=118  Identities=12%  Similarity=0.095  Sum_probs=76.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.+++..   ...++++|++|+|++| ++++.+...+. ++++|++|++++|..++.. ...+ ..+++|
T Consensus        66 ~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~-~~~l-~~l~~L  138 (197)
T 4ezg_A           66 HNIKDLTINNIHATNYN---PISGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHSAHDDSI-LTKI-NTLPKV  138 (197)
T ss_dssp             TTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSSBCBGGG-HHHH-TTCSSC
T ss_pred             CCCCEEEccCCCCCcch---hhhcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCCccCcHh-HHHH-hhCCCC
Confidence            57888999988666543   2345888999999987 47776666654 5888999999888776632 2233 357888


Q ss_pred             ceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++|+......+.....-.++++|++|+..  .|++-.   .-.++|+|+.
T Consensus       139 ~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~  185 (197)
T 4ezg_A          139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQ  185 (197)
T ss_dssp             CEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCE
T ss_pred             CEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCE
Confidence            88855443212222223566777877532  455532   2346788777

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.09  E-value=1.6e-05  Score=68.51  Aligned_cols=84  Identities=12%  Similarity=0.146  Sum_probs=67.1

Q ss_pred             CCCcCEEEccCCCCCHHHHHHHHh---cCCCCCeEecCCCCCcCHHHHHHHHHhC---CCCCEEecCCC-C-CCcHHHHH
Q 025644            5 DSSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFLLHC---HSLETLRCGGS-P-RSNHAARR   76 (250)
Q Consensus         5 d~~L~~LnLsgC~ITD~gL~~la~---~C~~L~~LdLS~C~~ITD~gl~~La~~C---~~L~~L~l~gC-~-~~dd~al~   76 (250)
                      +..|+.|+|++|+|+|.|..+||+   .-..|++|||+++ +|+|.|+.+|++..   ..|+.|+++++ . .+++.+..
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~  147 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  147 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence            478999999999999999999985   4678999999998 59999999999765   57999999987 3 56665555


Q ss_pred             HHhh---hCCCCceec
Q 025644           77 CLGI---LKPKLNDVE   89 (250)
Q Consensus        77 ~l~~---~cp~L~~L~   89 (250)
                      .|+.   .-+.|..|.
T Consensus       148 ~ia~aL~~N~tL~~L~  163 (197)
T 1pgv_A          148 DMMMAIEENESLLRVG  163 (197)
T ss_dssp             HHHHHHHHCSSCCEEE
T ss_pred             HHHHHHHhCCCcCeEe
Confidence            5543   345666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.07  E-value=2.4e-06  Score=70.45  Aligned_cols=100  Identities=15%  Similarity=0.036  Sum_probs=73.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC-CCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP-RSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~-~~dd~al~~l~~~cp~   84 (250)
                      .+|++|+|++|.|++.+...++ ++++|++|++++| ++++.+...+. ++++|++|++++|. ..+-.    .-..+|+
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~----~l~~l~~  160 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIM----PLKTLPE  160 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG----GGGGCSS
T ss_pred             CCCCEEEeECCccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccH----hhcCCCC
Confidence            7899999999999987776655 5999999999998 58887777775 69999999999997 54432    2346899


Q ss_pred             CceecCCchhhhhhhcccccccccccccc
Q 025644           85 LNDVEGDSWEELVNTDIGHGAQSLRWFVW  113 (250)
Q Consensus        85 L~~L~~~s~~dl~~~~i~~g~~~L~~L~c  113 (250)
                      |+.|+.... .+.....-.++++|++|+.
T Consensus       161 L~~L~l~~n-~i~~~~~l~~l~~L~~L~l  188 (197)
T 4ezg_A          161 LKSLNIQFD-GVHDYRGIEDFPKLNQLYA  188 (197)
T ss_dssp             CCEEECTTB-CCCCCTTGGGCSSCCEEEE
T ss_pred             CCEEECCCC-CCcChHHhccCCCCCEEEe
Confidence            999865432 1221112245677888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.05  E-value=1.1e-06  Score=70.31  Aligned_cols=102  Identities=12%  Similarity=0.030  Sum_probs=69.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|++.   .....+++|++|+|++|. +++. +..+..++++|++|++++|..++-..... -..+|+|
T Consensus        49 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-l~~l~~L  122 (168)
T 2ell_A           49 VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECL  122 (168)
T ss_dssp             GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGG-GSSCSCC
T ss_pred             CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCccCcchhHHH-HhcCCCC
Confidence            5799999999977765   334568999999999985 5553 56677789999999999997666321112 2357899


Q ss_pred             ceecCCc--hhhhhh--hcccccccccccccc
Q 025644           86 NDVEGDS--WEELVN--TDIGHGAQSLRWFVW  113 (250)
Q Consensus        86 ~~L~~~s--~~dl~~--~~i~~g~~~L~~L~c  113 (250)
                      ++|+...  +.++..  ...-.++++|++|+.
T Consensus       123 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A          123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             CEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred             CEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence            9885543  222221  112356778888763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.03  E-value=3.3e-06  Score=74.45  Aligned_cols=73  Identities=19%  Similarity=0.211  Sum_probs=34.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++|++|+|++|.|++..-   ..++++|++|+|++| ++++-  .. ..++++|++|++++|...+-..    -..+++|
T Consensus        66 ~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n-~i~~~--~~-~~~l~~L~~L~l~~n~i~~~~~----~~~l~~L  134 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTN-KITDI--SA-LQNLTNLRELYLNEDNISDISP----LANLTKM  134 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCCC--GG-GTTCTTCSEEECTTSCCCCCGG----GTTCTTC
T ss_pred             CCccEEEccCCccccchh---hhcCCcCCEEEccCC-cccCc--hH-HcCCCcCCEEECcCCcccCchh----hccCCce
Confidence            345555555554444322   335555555555555 34431  11 2345555555555554433221    2245555


Q ss_pred             ceec
Q 025644           86 NDVE   89 (250)
Q Consensus        86 ~~L~   89 (250)
                      +.|+
T Consensus       135 ~~L~  138 (347)
T 4fmz_A          135 YSLN  138 (347)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            5553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.90  E-value=1.2e-05  Score=70.92  Aligned_cols=73  Identities=15%  Similarity=0.121  Sum_probs=39.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++|+.|+|++|.+++..-   ...+++|++|++++|. +++...   ..++++|++|++++|..++...    -..+++|
T Consensus       177 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L  245 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNKITDLSP----LANLSQL  245 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG----GTTCTTC
T ss_pred             CCCCEEEccCCccccccc---ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCccCCCcc----hhcCCCC
Confidence            467777777775554332   3456666666666653 333222   3456666666666665443321    2345566


Q ss_pred             ceec
Q 025644           86 NDVE   89 (250)
Q Consensus        86 ~~L~   89 (250)
                      +.|+
T Consensus       246 ~~L~  249 (347)
T 4fmz_A          246 TWLE  249 (347)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            6553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.83  E-value=8.5e-06  Score=65.96  Aligned_cols=120  Identities=18%  Similarity=0.134  Sum_probs=73.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|+|++  +..+...+++|++||+++| +|++-   .-..++++|++|+++++..++-.  ..+-..+|+|
T Consensus        19 ~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L   90 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNRICRIG--EGLDQALPDL   90 (176)
T ss_dssp             TSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSCCCEEC--SCHHHHCTTC
T ss_pred             CCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCcccccC--cchhhcCCCC
Confidence            578899999997764  3446666778999999998 46652   22346888999999988654321  0122468888


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC-----CCCHHHHHHHHhcCCCceec
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP-----NIDKDSIEMMSTECPRIIVN  134 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~-----~ITD~sL~~La~~Cp~L~~~  134 (250)
                      +.|+...  +.++.....-.++++|+.|+..     .+.+.. ..+...+|+|+..
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~-~~~~~~l~~L~~L  145 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR-LYVIYKVPQVRVL  145 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHH-HHHHHHCTTCSEE
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHH-HHHHHHCCcccee
Confidence            8875433  2222221122356677777532     232222 2234578888883

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.80  E-value=5.7e-06  Score=66.99  Aligned_cols=77  Identities=13%  Similarity=0.111  Sum_probs=37.4

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN   86 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~   86 (250)
                      +|++|+|++|.|++.   .--.++++|++|||++|. |++-. ..+..++++|++|+++++...+-..+..+ ..+|+|+
T Consensus        43 ~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~l-~~l~~L~  116 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIG-EGLDQALPDLTELILTNNSLVELGDLDPL-ASLKSLT  116 (176)
T ss_dssp             CCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGG-GGCTTCC
T ss_pred             CCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccC-cchhhcCCCCCEEECCCCcCCcchhhHhh-hcCCCCC
Confidence            566666666655542   112345666666666653 44211 11234566666666666654332211111 2456666


Q ss_pred             eec
Q 025644           87 DVE   89 (250)
Q Consensus        87 ~L~   89 (250)
                      .|.
T Consensus       117 ~L~  119 (176)
T 1a9n_A          117 YLC  119 (176)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.78  E-value=2.1e-05  Score=69.28  Aligned_cols=64  Identities=17%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             CCcCEEEccCCCCCHH--HHHHHHhc-CCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644            6 SSWEILDISGSDVSDF--GLVKVAQM-CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN   71 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~--gL~~la~~-C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d   71 (250)
                      .+|++|+|++|+|++.  .+..+... +++|++|+|+++. |+...-..+ .++++|++|+++++..++
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV-RVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC-CCCSSCCEEECCSCTTCH
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh-ccCCCCCEEECCCCCcCc
Confidence            5677788887755543  23233221 3566666666653 332211111 245566666666665443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.61  E-value=8.1e-06  Score=80.97  Aligned_cols=30  Identities=10%  Similarity=0.269  Sum_probs=17.8

Q ss_pred             cccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644          103 HGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus       103 ~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      .++.+|++|+..  .|++..-..+ .+|++|+.
T Consensus       220 ~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~  251 (768)
T 3rgz_A          220 GDCSALQHLDISGNKLSGDFSRAI-STCTELKL  251 (768)
T ss_dssp             TTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCE
T ss_pred             ccCCCCCEEECcCCcCCCcccHHH-hcCCCCCE
Confidence            355677777532  4664444444 37888887

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.58  E-value=2.9e-05  Score=68.16  Aligned_cols=105  Identities=10%  Similarity=0.029  Sum_probs=61.7

Q ss_pred             CCcCEEEccCCCCCHH----HHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHh--
Q 025644            6 SSWEILDISGSDVSDF----GLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLG--   79 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~----gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~--   79 (250)
                      .+|++|+|++|.|++.    +...+. .+++|++|+|++|. |+...-.. ..++++|++|+++++..+++..+..-.  
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             CCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCC-cchhhHHH-hccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            6788899999877752    223334 78888888888874 43321111 136788888888888766654332211  


Q ss_pred             hhCCCCceecCCc--hhhhhhh--cccccccccccccc
Q 025644           80 ILKPKLNDVEGDS--WEELVNT--DIGHGAQSLRWFVW  113 (250)
Q Consensus        80 ~~cp~L~~L~~~s--~~dl~~~--~i~~g~~~L~~L~c  113 (250)
                      ..+|+|++|+...  ++.+...  .+..++.+|+.|+.
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L  231 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL  231 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence            3577888875433  2211111  11245567777753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.53  E-value=4.5e-05  Score=67.39  Aligned_cols=55  Identities=20%  Similarity=0.282  Sum_probs=22.7

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      +|+.|++++|+|++..  . ...+++|++|+|++| +|++-.-   ..++++|++|++++|.
T Consensus        42 ~L~~L~l~~~~i~~l~--~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE--G-VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP   96 (308)
T ss_dssp             TCCEEECTTSCCCCCT--T-GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC
T ss_pred             CcCEEEeeCCCccCch--h-hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc
Confidence            4455555555333311  1 123445555555544 2332211   2344444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.45  E-value=8.4e-05  Score=69.14  Aligned_cols=61  Identities=15%  Similarity=0.020  Sum_probs=33.0

Q ss_pred             hcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCceecC
Q 025644           28 QMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEG   90 (250)
Q Consensus        28 ~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~   90 (250)
                      ..+++|++|||++|. +++.....+ .++++|++|++++|...+-..+-..-..+++|++|+.
T Consensus       321 ~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          321 SKISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             SSCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             hhCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            456677777777763 554322222 4566777777777765542222222234666666643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.40  E-value=0.00024  Score=65.79  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=13.3

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC   41 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C   41 (250)
                      +|++|++++|.+++..-   ...+++|++|+|++|
T Consensus       200 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          200 NLESLIATNNQISDITP---LGILTNLDELSLNGN  231 (466)
T ss_dssp             TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred             CCCEEEecCCccccccc---ccccCCCCEEECCCC
Confidence            44555555543332211   123444444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.39  E-value=0.00012  Score=64.34  Aligned_cols=111  Identities=18%  Similarity=0.188  Sum_probs=75.1

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|++.  .. ...+++|++|+|++|. |++-  .. ..++++|++|++++|..++-.    .-..+++|
T Consensus        90 ~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~-i~~~--~~-l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L  158 (291)
T 1h6t_A           90 KNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNG-ISDI--NG-LVHLPQLESLYLGNNKITDIT----VLSRLTKL  158 (291)
T ss_dssp             TTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSC-CCCC--GG-GGGCTTCCEEECCSSCCCCCG----GGGGCTTC
T ss_pred             CCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCc-CCCC--hh-hcCCCCCCEEEccCCcCCcch----hhccCCCC
Confidence            6799999999977763  22 4578999999999984 6652  22 347899999999999765532    23458899


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      +.|+...  +.++..   -.++++|+.|+..  .|++-  .. ..++++|+.
T Consensus       159 ~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~  204 (291)
T 1h6t_A          159 DTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDV  204 (291)
T ss_dssp             SEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSE
T ss_pred             CEEEccCCccccchh---hcCCCccCEEECCCCcCCCC--hh-hccCCCCCE
Confidence            9985543  222221   3567788888643  45553  22 347788877

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.36  E-value=0.00016  Score=63.52  Aligned_cols=57  Identities=16%  Similarity=0.120  Sum_probs=25.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      .+|+.|+|++|+|++..-   ..++++|++|+|++|. +++  +.. ..++++|++|++++|..
T Consensus        68 ~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~L~~n~i  124 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK-VKD--LSS-LKDLKKLKSLSLEHNGI  124 (291)
T ss_dssp             TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCC--GGG-GTTCTTCCEEECTTSCC
T ss_pred             CCCCEEEccCCccCCCcc---cccCCCCCEEECCCCc-CCC--Chh-hccCCCCCEEECCCCcC
Confidence            344555555554333221   2345555555555542 333  111 23455555555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.35  E-value=3.2e-05  Score=70.47  Aligned_cols=13  Identities=15%  Similarity=0.261  Sum_probs=6.3

Q ss_pred             CcCEEEccCCCCC
Q 025644            7 SWEILDISGSDVS   19 (250)
Q Consensus         7 ~L~~LnLsgC~IT   19 (250)
                      +|++|+|++|.|+
T Consensus        31 ~l~~L~Ls~n~i~   43 (455)
T 3v47_A           31 HVNYVDLSLNSIA   43 (455)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             ccCEEEecCCccC
Confidence            4455555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.35  E-value=0.00017  Score=66.82  Aligned_cols=74  Identities=12%  Similarity=0.102  Sum_probs=42.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++|+.|+|++|.+++..-   ..++++|++|++++|. +++..-   ..++++|+.|++++|...+-..    -..+|+|
T Consensus       243 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L  311 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQLEDISP----ISNLKNL  311 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCCSCCGG----GGGCTTC
T ss_pred             CCCCEEECCCCccccchh---hhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCcccCchh----hcCCCCC
Confidence            567777777775544322   3467777777777763 443221   3456777777777765444321    2346666


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      +.|+.
T Consensus       312 ~~L~L  316 (466)
T 1o6v_A          312 TYLTL  316 (466)
T ss_dssp             SEEEC
T ss_pred             CEEEC
Confidence            66643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.34  E-value=2.9e-05  Score=68.52  Aligned_cols=63  Identities=10%  Similarity=0.070  Sum_probs=35.1

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS   70 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~   70 (250)
                      ++|+.|+|++|.|++..-..+ .++++|++|||++| ++++.....+..++++|++|++++|..+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCEEECCCCCCCCccchhh-hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            356666666665554221111 24566666666665 3555545555555666666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.33  E-value=1e-05  Score=66.64  Aligned_cols=119  Identities=9%  Similarity=0.024  Sum_probs=74.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|++.  . ...++++|++|++++| +|+  .+..+...+++|++|++++|..++-.   .+ ..+++|
T Consensus        48 ~~L~~L~ls~n~l~~l--~-~~~~l~~L~~L~l~~n-~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~---~~-~~l~~L  117 (198)
T 1ds9_A           48 KACKHLALSTNNIEKI--S-SLSGMENLRILSLGRN-LIK--KIENLDAVADTLEELWISYNQIASLS---GI-EKLVNL  117 (198)
T ss_dssp             TTCSEEECSEEEESCC--C-CHHHHTTCCEEEEEEE-EEC--SCSSHHHHHHHCSEEEEEEEECCCHH---HH-HHHHHS
T ss_pred             CCCCEEECCCCCCccc--c-ccccCCCCCEEECCCC-Ccc--cccchhhcCCcCCEEECcCCcCCcCC---cc-ccCCCC
Confidence            5789999999866652  2 3346889999999998 466  35556677889999999998766643   22 246778


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCH---------HHHHHHHhcCCCceec
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDK---------DSIEMMSTECPRIIVN  134 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD---------~sL~~La~~Cp~L~~~  134 (250)
                      +.|+...  +.++.....-.++++|+.|+..  .+++         .-...+...+|+|+..
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  179 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence            8874432  2222221122456777777532  2222         2223445689999884

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.32  E-value=0.00015  Score=64.07  Aligned_cols=111  Identities=16%  Similarity=0.157  Sum_probs=76.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|++..  . ..++++|++|+|++|. +++-.-   ..++++|++|++++|...+-..    -..+++|
T Consensus       107 ~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L  175 (308)
T 1h6u_A          107 QSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ-ITNISP---LAGLTNLQYLSIGNAQVSDLTP----LANLSKL  175 (308)
T ss_dssp             TTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG----GTTCTTC
T ss_pred             CCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc-cCcCcc---ccCCCCccEEEccCCcCCCChh----hcCCCCC
Confidence            68999999999777632  2 4679999999999994 554322   5589999999999997665432    3468899


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      +.|+...  +.++..   -.++++|+.|+..  .|++..  . -.++|+|+.
T Consensus       176 ~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~  221 (308)
T 1h6u_A          176 TTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS--P-LANTSNLFI  221 (308)
T ss_dssp             CEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCE
T ss_pred             CEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc--c-ccCCCCCCE
Confidence            9985433  222221   2566788887642  444433  2 358888887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.31  E-value=8.7e-06  Score=70.79  Aligned_cols=80  Identities=15%  Similarity=0.069  Sum_probs=46.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHH-HHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGV-SEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl-~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      ++|++|+|++|+|++..- .+-.++++|++|+|+++. |+..|. ..-..++++|++|+++++....-.   .--..+++
T Consensus        28 ~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~---~~~~~l~~  102 (306)
T 2z66_A           28 SSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQ  102 (306)
T ss_dssp             TTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEEEE---EEEETCTT
T ss_pred             CCCCEEECCCCccCccCH-hHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccccCh---hhcCCCCC
Confidence            578888888886663221 122467888888888873 553321 111225788888888887543211   00124677


Q ss_pred             CceecC
Q 025644           85 LNDVEG   90 (250)
Q Consensus        85 L~~L~~   90 (250)
                      |++|+.
T Consensus       103 L~~L~l  108 (306)
T 2z66_A          103 LEHLDF  108 (306)
T ss_dssp             CCEEEC
T ss_pred             CCEEEC
Confidence            777643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.31  E-value=6.6e-05  Score=61.77  Aligned_cols=79  Identities=18%  Similarity=0.191  Sum_probs=48.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|++  +..+...+++|++|+|++| +|++  +.. ..++++|++|+++++...+-..+..+. .+++|
T Consensus        70 ~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~-~l~~L  142 (198)
T 1ds9_A           70 ENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSG-IEKLVNLRVLYMSNNKITNWGEIDKLA-ALDKL  142 (198)
T ss_dssp             TTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHH-HHHHHHSSEEEESEEECCCHHHHHHHT-TTTTC
T ss_pred             CCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC-cCCc--CCc-cccCCCCCEEECCCCcCCchhHHHHHh-cCCCC
Confidence            567788888875552  3334445677888888877 4554  333 335677888888777666543322332 46777


Q ss_pred             ceecCC
Q 025644           86 NDVEGD   91 (250)
Q Consensus        86 ~~L~~~   91 (250)
                      ++|+..
T Consensus       143 ~~L~l~  148 (198)
T 1ds9_A          143 EDLLLA  148 (198)
T ss_dssp             SEEEEC
T ss_pred             CEEEec
Confidence            776443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.29  E-value=0.0002  Score=64.07  Aligned_cols=80  Identities=16%  Similarity=0.223  Sum_probs=37.2

Q ss_pred             CcCEEEccCCCCCHH-HHHHHHhcCCCCCeEecCCCCCcCHH-HHHHHHHhCCCCCEEecCCCCCCc-----HHHHHHHh
Q 025644            7 SWEILDISGSDVSDF-GLVKVAQMCKSLKAVDISCCDRITAA-GVSEFLLHCHSLETLRCGGSPRSN-----HAARRCLG   79 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~-gL~~la~~C~~L~~LdLS~C~~ITD~-gl~~La~~C~~L~~L~l~gC~~~d-----d~al~~l~   79 (250)
                      +|+.|||+++.|++- ++..+...+++|++||||+. +|++- .+..+. +. +|++|++.|.+..+     ...+..+-
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHHHHH
Confidence            455666666544431 23333445566666666554 24332 222222 12 55666666555442     12233344


Q ss_pred             hhCCCCceec
Q 025644           80 ILKPKLNDVE   89 (250)
Q Consensus        80 ~~cp~L~~L~   89 (250)
                      ..+|+|+.|+
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            4555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.29  E-value=6.5e-05  Score=65.14  Aligned_cols=72  Identities=18%  Similarity=0.171  Sum_probs=45.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|++++|+|++..  . ...+++|++|+|++| +|++-.-   ..++++|++|+++++...+-.   .+..  ++|
T Consensus        41 ~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~l~~l~---~~~~--~~L  108 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLA--G-MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNRLKNLN---GIPS--ACL  108 (263)
T ss_dssp             TTCSEEECTTSCCCCCT--T-GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSCCSCCT---TCCC--SSC
T ss_pred             CcCcEEECcCCCcccch--H-HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCccCCcC---cccc--Ccc
Confidence            57888888888666533  2 346788888888887 3554332   457788888888888654422   1122  666


Q ss_pred             ceec
Q 025644           86 NDVE   89 (250)
Q Consensus        86 ~~L~   89 (250)
                      +.|+
T Consensus       109 ~~L~  112 (263)
T 1xeu_A          109 SRLF  112 (263)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            6663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.27  E-value=0.00015  Score=63.65  Aligned_cols=29  Identities=14%  Similarity=0.156  Sum_probs=14.8

Q ss_pred             ccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644          104 GAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus       104 g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++.+|+.|+..  .|++.....+ .++++|+.
T Consensus       214 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~  244 (330)
T 1xku_A          214 GLNNLAKLGLSFNSISAVDNGSL-ANTPHLRE  244 (330)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTG-GGSTTCCE
T ss_pred             CCCCCCEEECCCCcCceeChhhc-cCCCCCCE
Confidence            45667776532  3443222222 35777777

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.25  E-value=0.00034  Score=65.06  Aligned_cols=121  Identities=15%  Similarity=0.091  Sum_probs=75.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCH-HHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD-~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      ++|++|+|++|.|++.....+ ..+++|++|+|++|. +++ ..+.....++++|++|++++|...+.... ..-..+++
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~~  400 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTKS  400 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCCTT
T ss_pred             CcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCccccc-chhccCcc
Confidence            689999999998887444333 579999999999995 665 34445567899999999999976552100 01234688


Q ss_pred             CceecCCchhhhhhhcccccc-ccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           85 LNDVEGDSWEELVNTDIGHGA-QSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        85 L~~L~~~s~~dl~~~~i~~g~-~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      |+.|+..... +.. .+..+. ++|+.|+..  +|+  ++..-..++++|+.
T Consensus       401 L~~L~Ls~N~-l~~-~~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~  448 (520)
T 2z7x_B          401 LLSLNMSSNI-LTD-TIFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQE  448 (520)
T ss_dssp             CCEEECCSSC-CCG-GGGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCE
T ss_pred             CCEEECcCCC-CCc-chhhhhcccCCEEECCCCccc--ccchhhhcCCCCCE
Confidence            8887544321 110 111222 577777532  344  22221227788877

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.24  E-value=3.6e-05  Score=68.74  Aligned_cols=120  Identities=17%  Similarity=0.111  Sum_probs=67.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHH--------hcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVA--------QMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRC   77 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la--------~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~   77 (250)
                      .+|++|+|++|+++...-..+.        .++++|++|+|++|. ++  .+..-..++++|++|++++|..+.-.  ..
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~L~~N~l~~l~--~~  224 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR--SLPASIANLQNLKSLKIRNSPLSALG--PA  224 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC--CCCGGGGGCTTCCEEEEESSCCCCCC--GG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC--cchHhhcCCCCCCEEEccCCCCCcCc--hh
Confidence            6789999998732211111111        248889999999884 55  23223467889999999988654321  01


Q ss_pred             HhhhCCCCceecCCchhhhhhhc-cccccccccccc---cCCCCHHHHHHHHhcCCCcee
Q 025644           78 LGILKPKLNDVEGDSWEELVNTD-IGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        78 l~~~cp~L~~L~~~s~~dl~~~~-i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~  133 (250)
                       -..+++|+.|+.....-..... .-.++.+|+.|+   |..++.-. .. -.++++|+.
T Consensus       225 -l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~-~~~l~~L~~  281 (328)
T 4fcg_A          225 -IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LD-IHRLTQLEK  281 (328)
T ss_dssp             -GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TT-GGGCTTCCE
T ss_pred             -hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hh-hhcCCCCCE
Confidence             2357888888654432222111 124566777775   33222110 11 247788887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.24  E-value=0.00083  Score=62.59  Aligned_cols=83  Identities=16%  Similarity=0.033  Sum_probs=46.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHH--HHhCCCCCEEecCCCCCCcHHHHHHHhhhCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEF--LLHCHSLETLRCGGSPRSNHAARRCLGILKP   83 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~L--a~~C~~L~~L~l~gC~~~dd~al~~l~~~cp   83 (250)
                      .+|+.|+|++|.|+... ..+..++++|++|||++|. +++......  ...+++|++|++++|..++-......-..++
T Consensus       310 ~~L~~L~l~~n~l~~ip-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          310 EKVKRITVENSKVFLVP-CSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             TTCCEEEEESSCCCCCC-HHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             ccceEEEeccCccccCC-HHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            35666666666444221 1233467777777777763 666544332  2456777777777776654321112234567


Q ss_pred             CCceecC
Q 025644           84 KLNDVEG   90 (250)
Q Consensus        84 ~L~~L~~   90 (250)
                      +|++|+.
T Consensus       388 ~L~~L~L  394 (549)
T 2z81_A          388 NLTSLDI  394 (549)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEC
Confidence            7777643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.23  E-value=0.00014  Score=71.26  Aligned_cols=57  Identities=18%  Similarity=0.127  Sum_probs=26.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      ++|+.|+|++|.|++..-   ...+++|++|+|++|. +++  +.. ..++++|+.|++++|..
T Consensus        65 ~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~--l~~-l~~l~~L~~L~Ls~N~l  121 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENK-IKD--LSS-LKDLKKLKSLSLEHNGI  121 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCC--CTT-STTCTTCCEEECTTSCC
T ss_pred             CCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCC-CCC--Chh-hccCCCCCEEEecCCCC
Confidence            455666666654443221   2345555555555552 332  111 23355555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.21  E-value=3.3e-05  Score=66.56  Aligned_cols=60  Identities=13%  Similarity=0.218  Sum_probs=33.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      .+|+.|+|+++.|++..-..+ ..+++|++|+|+++ ++++..-..+ .++++|++|+++++.
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNA   91 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCT
T ss_pred             CCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCC
Confidence            467777777775555332222 35667777777766 3443222222 346677777777664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.21  E-value=0.00021  Score=61.59  Aligned_cols=117  Identities=10%  Similarity=0.047  Sum_probs=63.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|++++|.|++..  . ...+++|++|+|++|. +++  +. -..++++|++|++++|...+-.  ...-..+++|
T Consensus        41 ~~L~~L~l~~~~i~~~~--~-l~~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L  111 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ--G-IQYLPNVRYLALGGNK-LHD--IS-ALKELTNLTYLILTGNQLQSLP--NGVFDKLTNL  111 (272)
T ss_dssp             TTCCEEECTTSCCCCCT--T-GGGCTTCCEEECTTSC-CCC--CG-GGTTCTTCCEEECTTSCCCCCC--TTTTTTCTTC
T ss_pred             cceeeeeeCCCCccccc--c-cccCCCCcEEECCCCC-CCC--ch-hhcCCCCCCEEECCCCccCccC--hhHhcCCcCC
Confidence            57888888888665432  1 2458888888888874 554  22 2346788888888888544321  0112356777


Q ss_pred             ceecCCchhhhhhhc--cccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDSWEELVNTD--IGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~--i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++|+.... .+....  .-.++.+|++|+..  +|+...-.. -.++++|+.
T Consensus       112 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~  161 (272)
T 3rfs_A          112 KELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTE  161 (272)
T ss_dssp             CEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCE
T ss_pred             CEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHH-hccCccCCE
Confidence            77744321 111111  11355667776532  333211111 135677776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.18  E-value=0.00012  Score=63.45  Aligned_cols=110  Identities=12%  Similarity=0.053  Sum_probs=73.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|+|++..-   ..++++|++|+|++|. +++  +..+..  ++|++|++++|..++-.   . -..+++|
T Consensus        63 ~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~-l~~--l~~~~~--~~L~~L~L~~N~l~~~~---~-l~~l~~L  130 (263)
T 1xeu_A           63 TNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR-LKN--LNGIPS--ACLSRLFLDNNELRDTD---S-LIHLKNL  130 (263)
T ss_dssp             TTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC-CSC--CTTCCC--SSCCEEECCSSCCSBSG---G-GTTCTTC
T ss_pred             CCCCEEECCCCccCCChh---hccCCCCCEEECCCCc-cCC--cCcccc--CcccEEEccCCccCCCh---h-hcCcccc
Confidence            689999999997776543   5679999999999984 554  222222  89999999999766532   1 2358889


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      +.|+...  ++++.   .-.++.+|+.|+..  .|++.   ..-.++++|+.
T Consensus       131 ~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~  176 (263)
T 1xeu_A          131 EILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW  176 (263)
T ss_dssp             CEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE
T ss_pred             cEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCE
Confidence            9885433  22222   22456778887642  45554   22346777776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.18  E-value=4.1e-05  Score=65.97  Aligned_cols=122  Identities=11%  Similarity=-0.007  Sum_probs=75.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|++..-..+ .++++|++|+|++|..+++-.... ..++++|++|++++|..++..  ...-..+++|
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L  131 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCGLQELG--PGLFRGLAAL  131 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTSCCCCCC--TTTTTTCTTC
T ss_pred             CCCCEEECCCCccceeCHhhc-CCccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCCcCCEEC--HhHhhCCcCC
Confidence            689999999997776433333 468999999999997566543222 246899999999999654421  0112357889


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++|+...  +..+... .-.++.+|+.|+..  +|++-.-..+ .++++|+.
T Consensus       132 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~  181 (285)
T 1ozn_A          132 QYLYLQDNALQALPDD-TFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDR  181 (285)
T ss_dssp             CEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCE
T ss_pred             CEEECCCCcccccCHh-HhccCCCccEEECCCCcccccCHHHh-cCccccCE
Confidence            8885433  2221111 11456778887643  3443222222 25778877

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.16  E-value=0.00026  Score=69.39  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|++.  . -...+++|++|+|++|. |++  +.. ..+|++|+.|+|++|..++-.    .-..+++|
T Consensus        87 ~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~-l~~--l~~-l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L  155 (605)
T 1m9s_A           87 KNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHNG-ISD--ING-LVHLPQLESLYLGNNKITDIT----VLSRLTKL  155 (605)
T ss_dssp             TTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTSC-CCC--CGG-GGGCTTCSEEECCSSCCCCCG----GGGSCTTC
T ss_pred             CCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCCC-CCC--Ccc-ccCCCccCEEECCCCccCCch----hhcccCCC
Confidence            6789999999976652  2 23468899999999985 554  222 457899999999999765532    22357888


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      +.|+...  +.++..   -.++++|+.|+..  .|++-  .. ..+|++|+.
T Consensus       156 ~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L~~  201 (605)
T 1m9s_A          156 DTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDV  201 (605)
T ss_dssp             SEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSE
T ss_pred             CEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--hH-HccCCCCCE
Confidence            8885443  222211   3566778887643  45552  22 346788877

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.16  E-value=2.6e-05  Score=66.91  Aligned_cols=80  Identities=21%  Similarity=0.157  Sum_probs=50.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|+|++.+-..+ .++++|++|+|++| +|+.-.-.. ..++++|++|+++++...+-..  ..-..+++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNPIQSLAL--GAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCCCCEECT--TTTTTCTTC
T ss_pred             CCccEEECCCCcccccCHhHh-ccccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCCccCccCh--hhhcCCccc
Confidence            568899999887776544333 35888999999988 455322212 2467888888888886543210  011346777


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      ++|+.
T Consensus       103 ~~L~l  107 (276)
T 2z62_A          103 QKLVA  107 (276)
T ss_dssp             CEEEC
T ss_pred             cEEEC
Confidence            77643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.11  E-value=8.8e-05  Score=66.21  Aligned_cols=100  Identities=14%  Similarity=0.087  Sum_probs=64.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|+|+  .+-.-...+++|++|+|++|. ++  ++..-..++++|++|++++|..++..  -..-..+++|
T Consensus       183 ~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~-l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L  255 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSP-LS--ALGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPL  255 (328)
T ss_dssp             TTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSC-CC--CCCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCC
T ss_pred             CCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCC-CC--cCchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCC
Confidence            68999999999766  222234578999999999985 55  23223567899999999999654431  0112357888


Q ss_pred             ceecCCchhhhhhhc-cccccccccccc
Q 025644           86 NDVEGDSWEELVNTD-IGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~-i~~g~~~L~~L~  112 (250)
                      ++|+...+.-+.... .-.++.+|+.|+
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            888655432222111 114567777775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.07  E-value=7.5e-05  Score=69.85  Aligned_cols=79  Identities=22%  Similarity=0.148  Sum_probs=43.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .++++|||++++||.-.-..+ .++++|++|||++|. |+.-.- ..-.++++|++|+++++....-.  ...-..+++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f-~~l~~L~~L~Ls~N~-i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l~--~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCCCCEEC--GGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHHHH-hCCCCCCEEECCCCc-CCCcCh-hHhcCCCCCCEEEccCCcCCCCC--HHHhcCCCCC
Confidence            467888888876553221112 357788888888873 432100 01245777888888777543211  0011346677


Q ss_pred             ceec
Q 025644           86 NDVE   89 (250)
Q Consensus        86 ~~L~   89 (250)
                      ++|+
T Consensus       127 ~~L~  130 (635)
T 4g8a_A          127 QKLV  130 (635)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            7764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.05  E-value=0.00062  Score=59.59  Aligned_cols=84  Identities=13%  Similarity=0.177  Sum_probs=59.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHH--HhCCCCCEEecCCCCCCcHHH-HHHHhhhC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFL--LHCHSLETLRCGGSPRSNHAA-RRCLGILK   82 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La--~~C~~L~~L~l~gC~~~dd~a-l~~l~~~c   82 (250)
                      ++|++|+|++|.|+...-..+ .++++|++||||+|.-.++.++..-.  .++++|++|++++|..+.-.. ...+...+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            589999999997654332222 36899999999999766666665433  578999999999997764332 22244578


Q ss_pred             CCCceecC
Q 025644           83 PKLNDVEG   90 (250)
Q Consensus        83 p~L~~L~~   90 (250)
                      ++|++|+.
T Consensus       224 ~~L~~L~L  231 (310)
T 4glp_A          224 VQPHSLDL  231 (310)
T ss_dssp             CCCSSEEC
T ss_pred             CCCCEEEC
Confidence            89998854

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.04  E-value=4.7e-05  Score=66.14  Aligned_cols=102  Identities=12%  Similarity=-0.018  Sum_probs=56.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.++...-. ...++++|++|+|++|. +++..+.....++++|++|++++|...+...  ..-..+++|
T Consensus       126 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L  201 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSL  201 (306)
T ss_dssp             TTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECT--TTTTTCTTC
T ss_pred             cCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCCcCCcCH--HHhcCCCCC
Confidence            5788888888855432211 22457888888888873 5543333344567888888888886544210  011346777


Q ss_pred             ceecCCc--hhhhhhhccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      +.|+...  +.++....+ .++.+|+.|+
T Consensus       202 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~  229 (306)
T 2z66_A          202 QVLNMSHNNFFSLDTFPY-KCLNSLQVLD  229 (306)
T ss_dssp             CEEECTTSCCSBCCSGGG-TTCTTCCEEE
T ss_pred             CEEECCCCccCccChhhc-cCcccCCEeE
Confidence            7764432  122111111 3456666665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.03  E-value=3.1e-05  Score=72.28  Aligned_cols=39  Identities=23%  Similarity=0.129  Sum_probs=17.3

Q ss_pred             cCCCCCeEecCCCCCcCHHH-HHHHHHhCCCCCEEecCCCC
Q 025644           29 MCKSLKAVDISCCDRITAAG-VSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus        29 ~C~~L~~LdLS~C~~ITD~g-l~~La~~C~~L~~L~l~gC~   68 (250)
                      .+++|++|+|++|. ++..+ +.....++++|++|++++|.
T Consensus       345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~  384 (570)
T 2z63_A          345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG  384 (570)
T ss_dssp             BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred             cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc
Confidence            45555555555553 33211 01112345555555555553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.02  E-value=6.2e-05  Score=66.36  Aligned_cols=78  Identities=13%  Similarity=0.004  Sum_probs=40.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|++++|.|++..    ...+++|++|++++|. +++-.-..+ .++++|++|+++++...+.. ...+...+++|
T Consensus        99 ~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L  171 (317)
T 3o53_A           99 PSIETLHAANNNISRVS----CSRGQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKLNEIDTVN-FAELAASSDTL  171 (317)
T ss_dssp             TTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSC-CCSGGGBCT-GGGSSEEEEECTTSCCCEEE-GGGGGGGTTTC
T ss_pred             CCcCEEECCCCccCCcC----ccccCCCCEEECCCCC-CCCccchhh-hccCCCCEEECCCCCCCccc-HHHHhhccCcC
Confidence            45666666666554432    2245667777777763 443211111 34667777777777544321 11233345666


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      ++|+.
T Consensus       172 ~~L~L  176 (317)
T 3o53_A          172 EHLNL  176 (317)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            66643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.99  E-value=0.00011  Score=69.40  Aligned_cols=64  Identities=9%  Similarity=0.080  Sum_probs=35.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN   71 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d   71 (250)
                      ++|+.|+|++|.|++..-..+ .++++|++|||+++ ++++.....+..++++|++|++++|..++
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            456666666665554321111 24566666666665 35554445555556666666666665443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=96.94  E-value=0.00018  Score=64.02  Aligned_cols=59  Identities=20%  Similarity=0.223  Sum_probs=26.2

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      +|++|+|++|+|++..-..+ .++++|++|+|++| +|++..-.. ..++++|++|+++++.
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred             cCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCCc
Confidence            55555665554443222111 24555555555555 243311111 1234555555555553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.93  E-value=7.4e-05  Score=70.72  Aligned_cols=59  Identities=20%  Similarity=0.161  Sum_probs=25.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      .+|++|+|++|+|+.  +-.-..++++|++|+|++|. +++..-. ...++++|++|++++|.
T Consensus       278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANK-FENLCQI-SASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             TTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCC-CSBGGGG-CGGGCTTCSEEECCSCS
T ss_pred             cCCCEEeccCCccCC--CChhhcccccCCEEECccCC-cCcCchh-hhhccCcCCEEECCCCC
Confidence            345555555554331  10111345555555555552 3321111 12345555555555553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=96.90  E-value=0.00012  Score=67.51  Aligned_cols=61  Identities=16%  Similarity=0.105  Sum_probs=33.1

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      .+|++|+|++++|+...-..+ .++++|++|+|+++ +|++-....+ .++++|++|+++++..
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDNWL  135 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCC
T ss_pred             CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCCcC
Confidence            466777777775554322222 35667777777766 3443221111 3466666666666643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=96.88  E-value=7.8e-05  Score=68.76  Aligned_cols=59  Identities=14%  Similarity=0.207  Sum_probs=24.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS   67 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC   67 (250)
                      .+++.|+|++++|++..-..+ .++++|++|+|++| +|++..-..+ .++++|++|+++++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n   90 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNEN-IVSAVEPGAF-NNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS
T ss_pred             CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCC-ccCEeChhhh-hCCccCCEEECCCC
Confidence            345555555554443221111 23555555555554 2332211111 23444555555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=96.88  E-value=0.00019  Score=61.67  Aligned_cols=121  Identities=10%  Similarity=0.067  Sum_probs=64.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|+|++..-..+ .++++|++|+|+++. |+.-. ..+..++++|++|+++++....-..  ..-..+++|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTDNKLQALPI--GVFDQLVNL  111 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSS-SSCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCSSCCCCCCT--TTTTTCSSC
T ss_pred             CCCCEEECcCCCCCeeCHHHh-cCCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCCCcCCcCCH--hHcccccCC
Confidence            568888998886664332222 468888999998874 44211 1122467888888888885543210  112356778


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++|....  +..+... .-.++.+|+.|+..  .|+.-.-..+ .++++|+.
T Consensus       112 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~  161 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQSLPKGVF-DKLTSLKE  161 (270)
T ss_dssp             CEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCE
T ss_pred             CEEECCCCccCeeCHH-HhCcCcCCCEEECCCCcCCccCHhHc-cCCcccce
Confidence            8774432  1111111 11355667776532  2332111111 35667766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=96.83  E-value=0.0003  Score=60.63  Aligned_cols=119  Identities=8%  Similarity=-0.021  Sum_probs=71.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++|++|+|++|.|++.  . -...+++|++|+|++| ++++-.- ....++++|++|++++|...+-.  ...-..+++|
T Consensus        63 ~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L  135 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGN-QLQSLPN-GVFDKLTNLKELVLVENQLQSLP--DGVFDKLTNL  135 (272)
T ss_dssp             TTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCC-ccCccCh-hHhcCCcCCCEEECCCCcCCccC--HHHhccCCCC
Confidence            6899999999977763  2 2357899999999998 4553211 11256899999999999654321  0112357888


Q ss_pred             ceecCCchhhhhhhc--cccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDSWEELVNTD--IGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~--i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++|+.... .+....  .-.++.+|+.|+..  +|++..-.. -.++++|+.
T Consensus       136 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~  185 (272)
T 3rfs_A          136 TYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV-FDKLTQLKD  185 (272)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCE
T ss_pred             CEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHH-hcCCccCCE
Confidence            88854332 122111  12456777777532  344221111 236777777

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.82  E-value=0.00017  Score=66.25  Aligned_cols=60  Identities=12%  Similarity=0.160  Sum_probs=29.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      .+++.|+|++|+|+......+ .++++|++|+|++|. |++-.... ..++++|++|+++++.
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~-i~~i~~~~-~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNH-IRTIEIGA-FNGLANLNTLELFDNR  123 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSC-CCEECGGG-GTTCSSCCEEECCSSC
T ss_pred             CCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCc-CCccChhh-ccCCccCCEEECCCCc
Confidence            456666666664444332222 245666666666652 33322111 1245566666666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.79  E-value=0.00013  Score=68.80  Aligned_cols=57  Identities=14%  Similarity=0.022  Sum_probs=24.3

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      +|++|+|++|.|++..    ...+++|++|+|++|. +++..-..+ .++++|++|+++++..
T Consensus       100 ~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l  156 (487)
T 3oja_A          100 SIETLHAANNNISRVS----CSRGQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKLNEI  156 (487)
T ss_dssp             TCCEEECCSSCCCCEE----ECCCSSCEEEECCSSC-CCSGGGBCG-GGGSSEEEEECTTSCC
T ss_pred             CcCEEECcCCcCCCCC----ccccCCCCEEECCCCC-CCCCCchhh-cCCCCCCEEECCCCCC
Confidence            4444555554333321    1234555555555553 332111111 2355555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.78  E-value=0.00069  Score=64.07  Aligned_cols=102  Identities=12%  Similarity=-0.018  Sum_probs=52.0

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN   86 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~   86 (250)
                      +|+.|++++|.+++...   ...+++|++|++++|. +++.....+ .++++|++|+++++...+-......-..+++|+
T Consensus       332 ~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          332 NIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNV-FTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLE  406 (562)
T ss_dssp             CCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSC-CCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred             cceEEEccCCCcccccC---ccCCCCceEEECCCCc-cccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence            35566666654332211   1467778888888773 554222222 467778888888776554221112224567777


Q ss_pred             eecCCch--hhhhhhcccccccccccccc
Q 025644           87 DVEGDSW--EELVNTDIGHGAQSLRWFVW  113 (250)
Q Consensus        87 ~L~~~s~--~dl~~~~i~~g~~~L~~L~c  113 (250)
                      .|+....  ..........++.+|+.|+.
T Consensus       407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l  435 (562)
T 3a79_B          407 TLDVSLNSLNSHAYDRTCAWAESILVLNL  435 (562)
T ss_dssp             EEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred             EEECCCCcCCCccChhhhcCcccCCEEEC
Confidence            7643321  11001112345566666653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=96.76  E-value=7.5e-05  Score=70.71  Aligned_cols=10  Identities=30%  Similarity=0.667  Sum_probs=5.6

Q ss_pred             CcCEEEccCC
Q 025644            7 SWEILDISGS   16 (250)
Q Consensus         7 ~L~~LnLsgC   16 (250)
                      +|+.|+|++|
T Consensus       308 ~L~~L~l~~n  317 (606)
T 3vq2_A          308 KWQSLSIIRC  317 (606)
T ss_dssp             CCSEEEEESC
T ss_pred             cCCEEEcccc
Confidence            4555555555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.74  E-value=0.00022  Score=66.62  Aligned_cols=115  Identities=10%  Similarity=0.050  Sum_probs=67.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|||++|+|+...-. .-.++++|++|||++|. |+.-.-. .-.++++|++|++++|..+.-.  ...-..+++|
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~-l~~l~~~-~f~~L~~L~~L~Ls~N~l~~l~--~~~~~~L~~L  150 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNP-IQSLALG-AFSGLSSLQKLVAVETNLASLE--NFPIGHLKTL  150 (635)
T ss_dssp             TTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCC-CCEECGG-GGTTCTTCCEEECTTSCCCCST--TCCCTTCTTC
T ss_pred             CCCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCc-CCCCCHH-HhcCCCCCCEEECCCCcCCCCC--hhhhhcCccc
Confidence            6899999999966632111 12478999999999984 5532211 2257899999999999654321  0012357888


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC-----CCCHHHHHHHH
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP-----NIDKDSIEMMS  125 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~-----~ITD~sL~~La  125 (250)
                      ++|+...  +..+..-..-.++..|++|...     .+....+..+.
T Consensus       151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence            8885432  1111111122455677777532     34445555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.74  E-value=0.002  Score=59.97  Aligned_cols=116  Identities=20%  Similarity=0.111  Sum_probs=74.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHH--HhcCCCCCeEecCCCCCcCHHH-HHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhC
Q 025644            6 SSWEILDISGSDVSDFGLVKV--AQMCKSLKAVDISCCDRITAAG-VSEFLLHCHSLETLRCGGSPRSNHAARRCLGILK   82 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~l--a~~C~~L~~LdLS~C~~ITD~g-l~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~c   82 (250)
                      .+|++|+|++|.+++......  ...+++|++|+|++|. +++-. ......++++|++|++++|..+.-.   .....+
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~~  409 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMP---DSCQWP  409 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCC---SCCCCC
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCC---hhhccc
Confidence            689999999999998766543  3578999999999995 66543 2345678999999999999654210   012346


Q ss_pred             CCCceecCCchhhhhhhccccc-cccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           83 PKLNDVEGDSWEELVNTDIGHG-AQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        83 p~L~~L~~~s~~dl~~~~i~~g-~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++|++|+..+.. +.  .+... .++|+.|+..  +|++.     ..++|+|+.
T Consensus       410 ~~L~~L~Ls~N~-l~--~l~~~~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~  455 (549)
T 2z81_A          410 EKMRFLNLSSTG-IR--VVKTCIPQTLEVLDVSNNNLDSF-----SLFLPRLQE  455 (549)
T ss_dssp             TTCCEEECTTSC-CS--CCCTTSCTTCSEEECCSSCCSCC-----CCCCTTCCE
T ss_pred             ccccEEECCCCC-cc--cccchhcCCceEEECCCCChhhh-----cccCChhcE
Confidence            788887543321 11  11111 1466666532  34431     246777777

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.74  E-value=0.00036  Score=67.78  Aligned_cols=117  Identities=13%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ..|+.|+|++|+|+.  +-. ..++++|++|||+++. |+  .+-.-..++++|++|+++++..++-.   . -..+++|
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp---~-l~~l~~L  510 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDNALENVD---G-VANLPRL  510 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCCCG---G-GTTCSSC
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCCCCCCCc---c-cCCCCCC
Confidence            468889999986664  223 4568899999999984 55  33233457899999999988665421   1 2347788


Q ss_pred             ceecCCc--hhhhh-hhccccccccccccccC--CCCH--HHHHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELV-NTDIGHGAQSLRWFVWP--NIDK--DSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~-~~~i~~g~~~L~~L~c~--~ITD--~sL~~La~~Cp~L~~  133 (250)
                      +.|+...  +..+. ...+ .++++|+.|+..  .|+.  .....+...+|+|++
T Consensus       511 ~~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          511 QELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             CEEECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             cEEECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            8874432  22221 1111 345666766532  1221  123334445666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.73  E-value=8.9e-05  Score=74.26  Aligned_cols=81  Identities=11%  Similarity=-0.065  Sum_probs=45.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++|+.|||++|.|+...-..+ .++++|++|||++|..++.-.-.. ..++++|++|++++|...+-.  -..-..+++|
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~-~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~l~~~~--p~~~~~l~~L   99 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSF-PFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKIYFLH--PDAFQGLFHL   99 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSC-SSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCCCCEEC--TTSSCSCSSC
T ss_pred             CCcCEEECCCCcCCccChhHC-cccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCcCcccC--HhHccCCccc
Confidence            567888888876654322222 457778888888774433211111 156777777777777543320  0011246667


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      ++|+.
T Consensus       100 ~~L~L  104 (844)
T 3j0a_A          100 FELRL  104 (844)
T ss_dssp             CCEEC
T ss_pred             CEeeC
Confidence            66643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=96.68  E-value=0.0002  Score=66.09  Aligned_cols=82  Identities=12%  Similarity=0.062  Sum_probs=50.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|++.....+ .++++|++|+|+++. ++.-.-. ...++++|++|+++++....-.  ...-..+++|
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L  173 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNW-LTVIPSG-AFEYLSKLRELWLRNNPIESIP--SYAFNRVPSL  173 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CSBCCTT-TSSSCTTCCEEECCSCCCCEEC--TTTTTTCTTC
T ss_pred             CCCCEEECCCCccCCcChhhc-cCcccCCEEECCCCc-CCccChh-hhcccCCCCEEECCCCCcceeC--HhHHhcCCcc
Confidence            678999999987765433322 368889999999874 5422111 1246888888888888654321  0112356777


Q ss_pred             ceecCCc
Q 025644           86 NDVEGDS   92 (250)
Q Consensus        86 ~~L~~~s   92 (250)
                      +.|+...
T Consensus       174 ~~L~l~~  180 (452)
T 3zyi_A          174 MRLDLGE  180 (452)
T ss_dssp             CEEECCC
T ss_pred             cEEeCCC
Confidence            7765443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=96.68  E-value=0.0044  Score=54.25  Aligned_cols=107  Identities=14%  Similarity=0.185  Sum_probs=70.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHH--HhCCCCCEEecCCCCCCcHH-HHHHHhhhC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFL--LHCHSLETLRCGGSPRSNHA-ARRCLGILK   82 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La--~~C~~L~~L~l~gC~~~dd~-al~~l~~~c   82 (250)
                      .+|++|+|++|+|+...-..+ .++++|++|||+++.-.++.++..-.  .++++|++|++++|...+-. ....+...+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR  227 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence            689999999997665433333 36899999999999755555543333  78899999999999876432 223455678


Q ss_pred             CCCceecCCc--hhhhhhhcccccccccccccc
Q 025644           83 PKLNDVEGDS--WEELVNTDIGHGAQSLRWFVW  113 (250)
Q Consensus        83 p~L~~L~~~s--~~dl~~~~i~~g~~~L~~L~c  113 (250)
                      ++|+.|+...  +.+........++.+|++|+.
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence            9999985433  222111223345567777753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.65  E-value=0.00011  Score=68.50  Aligned_cols=102  Identities=13%  Similarity=-0.004  Sum_probs=66.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.+++..- ....++++|++|+|++|. +++..+.....+|++|++|++++|..++... .. -..+++|
T Consensus       421 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~~l~~L  496 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TA-FNSLSSL  496 (570)
T ss_dssp             TTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECT-TT-TTTCTTC
T ss_pred             CCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCCh-hh-hhcccCC
Confidence            689999999996654322 223579999999999995 6654444455689999999999997654310 11 1357899


Q ss_pred             ceecCCch--hhhhhhccccccccccccc
Q 025644           86 NDVEGDSW--EELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s~--~dl~~~~i~~g~~~L~~L~  112 (250)
                      ++|+....  .++... .-.++++|+.|+
T Consensus       497 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~  524 (570)
T 2z63_A          497 QVLNMASNQLKSVPDG-IFDRLTSLQKIW  524 (570)
T ss_dssp             CEEECCSSCCSCCCTT-TTTTCTTCCEEE
T ss_pred             CEEeCCCCcCCCCCHH-HhhcccCCcEEE
Confidence            99865432  222111 114567777774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.59  E-value=3.8e-05  Score=64.66  Aligned_cols=81  Identities=6%  Similarity=-0.053  Sum_probs=47.1

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCC-CCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGS-PRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC-~~~dd~al~~l~~~cp~   84 (250)
                      .+|+.|+|++++|+...-..+ .++++|++|+|+++..++.-.-.. -.+|++|++|++++| ....-.  ...-..+++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~--~~~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYID--PDALKELPL  106 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEEC--TTSEECCTT
T ss_pred             CcccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcC--HHHhCCCCC
Confidence            468888888886664332222 458888888888886444321111 146788888888874 332210  001124677


Q ss_pred             CceecC
Q 025644           85 LNDVEG   90 (250)
Q Consensus        85 L~~L~~   90 (250)
                      |+.|+.
T Consensus       107 L~~L~l  112 (239)
T 2xwt_C          107 LKFLGI  112 (239)
T ss_dssp             CCEEEE
T ss_pred             CCEEeC
Confidence            777643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.58  E-value=0.0003  Score=64.69  Aligned_cols=82  Identities=15%  Similarity=0.141  Sum_probs=52.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|++.....+ .++++|++|+|+++ +|++-.-. ...++++|++|+++++....-..  ..-..+++|
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L  162 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDN-RLTTIPNG-AFVYLSKLKELWLRNNPIESIPS--YAFNRIPSL  162 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGG-TTCSSCCEEECCSS-CCSSCCTT-TSCSCSSCCEEECCSCCCCEECT--TTTTTCTTC
T ss_pred             CCCCEEECCCCcCCccChhhc-cCCccCCEEECCCC-cCCeeCHh-HhhccccCceeeCCCCcccccCH--HHhhhCccc
Confidence            679999999997765443333 46899999999998 45532211 12467889999998886543210  112356777


Q ss_pred             ceecCCc
Q 025644           86 NDVEGDS   92 (250)
Q Consensus        86 ~~L~~~s   92 (250)
                      +.|+...
T Consensus       163 ~~L~l~~  169 (440)
T 3zyj_A          163 RRLDLGE  169 (440)
T ss_dssp             CEEECCC
T ss_pred             CEeCCCC
Confidence            7775543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=96.55  E-value=0.00041  Score=68.72  Aligned_cols=60  Identities=28%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CCcCEEEccCCCCCHHHHHH--HHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVK--VAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~--la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      .+|++|||++|.|++.....  +..+|++|++|++++|.-.+...+    .+|++|++|++++|..
T Consensus       151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l  212 (768)
T 3rgz_A          151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNF  212 (768)
T ss_dssp             TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcC
Confidence            45666666666555433332  134566666666666532111111    4556666666666643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.50  E-value=0.0018  Score=61.27  Aligned_cols=121  Identities=17%  Similarity=0.059  Sum_probs=72.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHH-HHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAA-GVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~-gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      .+|++|+|++|.|++.....+ .++++|++|+|+++ ++++- .+.....++++|++|+++++...+... ...-..+++
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~l~~  429 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY-DRTCAWAES  429 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS-SCCCCCCTT
T ss_pred             CCceEEECCCCccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccC-hhhhcCccc
Confidence            789999999998887333222 57899999999998 46642 333344689999999999997654100 011235688


Q ss_pred             CceecCCchhhhhhhcccccc-ccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           85 LNDVEGDSWEELVNTDIGHGA-QSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        85 L~~L~~~s~~dl~~~~i~~g~-~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      |+.|+..+.. +.. .+..+. .+|+.|+..  +|+  ++..-..++++|+.
T Consensus       430 L~~L~l~~n~-l~~-~~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~  477 (562)
T 3a79_B          430 ILVLNLSSNM-LTG-SVFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQE  477 (562)
T ss_dssp             CCEEECCSSC-CCG-GGGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSE
T ss_pred             CCEEECCCCC-CCc-chhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCE
Confidence            8887544321 111 112233 577777532  344  11111126677776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.44  E-value=0.00056  Score=60.20  Aligned_cols=59  Identities=17%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS   70 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~   70 (250)
                      .+|++|+|++|.|++..-    .-.++|++|+++++. |+.-.- ....++++|++|+++++...
T Consensus       102 ~~L~~L~L~~n~l~~l~~----~~~~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          102 RKLQKLYISKNHLVEIPP----NLPSSLVELRIHDNR-IRKVPK-GVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             TTCCEEECCSSCCCSCCS----SCCTTCCEEECCSSC-CCCCCS-GGGSSCSSCCEEECCSCCCB
T ss_pred             CCCCEEECCCCcCCccCc----cccccCCEEECCCCc-cCccCH-hHhCCCccCCEEECCCCccc
Confidence            567777777775552111    112677777777763 432111 11245677777777776543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=96.44  E-value=0.0006  Score=61.24  Aligned_cols=119  Identities=13%  Similarity=0.076  Sum_probs=78.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++|+.|+|++|.|++.....+ .++++|++|+|++|. +++  +......+++|++|++++|....-..  .+ ..+++|
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~--~~-~~l~~L  320 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNHLLHVER--NQ-PQFDRL  320 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSC-CCE--EECSSSCCTTCCEEECCSSCCCCCGG--GH-HHHTTC
T ss_pred             CCccEEECCCCcCCCcChhHc-cccccCCEEECCCCc-Ccc--cCcccCCCCCCCEEECCCCcceecCc--cc-cccCcC
Confidence            689999999998776533333 468999999999984 554  22223578999999999996543210  11 347889


Q ss_pred             ceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      +.|+.... .+.... -..+++|+.|+..  .++...+..+....++..+
T Consensus       321 ~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~  368 (390)
T 3o6n_A          321 ENLYLDHN-SIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV  368 (390)
T ss_dssp             SEEECCSS-CCCCCC-CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTB
T ss_pred             CEEECCCC-ccceeC-chhhccCCEEEcCCCCccchhHHHHHHHHHhhcc
Confidence            99855432 122222 2456788888643  5777778777766666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.42  E-value=0.00022  Score=67.42  Aligned_cols=82  Identities=16%  Similarity=0.129  Sum_probs=47.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.+++..-.. ...+++|++|+|++|. ++.........++++|++|++++|...+...  ..-..+|+|
T Consensus       376 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L  451 (606)
T 3t6q_A          376 SHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSE--QLFDGLPAL  451 (606)
T ss_dssp             TTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCT--TTTTTCTTC
T ss_pred             CCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcCH--HHHhCCCCC
Confidence            57788888887655432222 2357778888888774 4433322334567778888887775433210  111346777


Q ss_pred             ceecCC
Q 025644           86 NDVEGD   91 (250)
Q Consensus        86 ~~L~~~   91 (250)
                      +.|+..
T Consensus       452 ~~L~L~  457 (606)
T 3t6q_A          452 QHLNLQ  457 (606)
T ss_dssp             CEEECT
T ss_pred             CEEECC
Confidence            776443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.40  E-value=0.00052  Score=56.40  Aligned_cols=102  Identities=11%  Similarity=0.046  Sum_probs=59.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++++|++..-. +..++++|++|+|+++ ++++-. .....++++|++|+++++..++-.  ...-..+++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L  102 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTNQLQSLP--NGVFDKLTQL  102 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred             CCCcEEEcCCCccCcCChh-hhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCCcCCccC--HhHhcCccCC
Confidence            5789999999966643221 2356899999999997 455221 112356889999999988654321  0112357788


Q ss_pred             ceecCCc--hhhhhhhcccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVW  113 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c  113 (250)
                      ++|+...  +..+... .-.++.+|+.|+.
T Consensus       103 ~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l  131 (208)
T 2o6s_A          103 KELALNTNQLQSLPDG-VFDKLTQLKDLRL  131 (208)
T ss_dssp             CEEECCSSCCCCCCTT-TTTTCTTCCEEEC
T ss_pred             CEEEcCCCcCcccCHh-HhccCCcCCEEEC
Confidence            8874432  1111110 1134566777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.38  E-value=0.00033  Score=63.00  Aligned_cols=61  Identities=13%  Similarity=0.071  Sum_probs=25.1

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      .+|+.|+|++|+|+...-..+ .++++|++|||+++. |+.-.- ....++++|++|+++++..
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~i  124 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNH-LHTLDE-FLFSDLQALEVLLLYNNHI  124 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSCC
T ss_pred             cccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCc-CCcCCH-HHhCCCcCCCEEECCCCcc
Confidence            344555555543332211111 234555555555542 322100 0113455555555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.37  E-value=0.00055  Score=58.12  Aligned_cols=101  Identities=10%  Similarity=0.054  Sum_probs=57.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++++|++..-..+ .++++|++|+|+++. |++..-. ...++++|++|+++++..+.-.  ...-..+++|
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L  109 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQ-LQTLSAG-VFDDLTELGTLGLANNQLASLP--LGVFDHLTQL  109 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSC-CCCCCTT-TTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTC
T ss_pred             CCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCc-CCccCHh-HhccCCcCCEEECCCCcccccC--hhHhcccCCC
Confidence            578889998886655433222 368889999998873 5542211 1246788888888888654321  0112356778


Q ss_pred             ceecCCc--hhhhhhhccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      ++|+...  +..+.. ..-.++.+|+.|+
T Consensus       110 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~  137 (251)
T 3m19_A          110 DKLYLGGNQLKSLPS-GVFDRLTKLKELR  137 (251)
T ss_dssp             CEEECCSSCCCCCCT-TTTTTCTTCCEEE
T ss_pred             CEEEcCCCcCCCcCh-hHhccCCcccEEE
Confidence            8774432  111110 0113456666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.35  E-value=0.0014  Score=61.37  Aligned_cols=32  Identities=6%  Similarity=0.087  Sum_probs=14.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC   41 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C   41 (250)
                      .+|++|+|++|+|++..    ...+++|++||+++|
T Consensus        64 ~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N   95 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD----LSQNTNLTYLACDSN   95 (457)
T ss_dssp             TTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS
T ss_pred             CCCCEEEccCCcCCeEc----cccCCCCCEEECcCC
Confidence            34555555555443321    223444555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.34  E-value=0.00079  Score=60.12  Aligned_cols=52  Identities=13%  Similarity=0.166  Sum_probs=39.0

Q ss_pred             HHHHHHHHhcCCCCCeEecCCCCCcCH-HHHHHHHHhCCCCCEEecCCCCCCcH
Q 025644           20 DFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNH   72 (250)
Q Consensus        20 D~gL~~la~~C~~L~~LdLS~C~~ITD-~gl~~La~~C~~L~~L~l~gC~~~dd   72 (250)
                      ...+..+...+|+|+.||||+.. |++ .++..+...+++|++|+|++....+-
T Consensus       159 ~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~  211 (267)
T 3rw6_A          159 AATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE  211 (267)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred             HHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence            33445555789999999999974 554 45667778899999999998866553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.33  E-value=0.00046  Score=66.22  Aligned_cols=57  Identities=19%  Similarity=0.239  Sum_probs=24.6

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      +|+.|+|++|.+++.   .....+++|++|+|++|. +++.....+ .++++|++|++++|.
T Consensus       233 ~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~  289 (597)
T 3oja_B          233 ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLERLYISNNR  289 (597)
T ss_dssp             CCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEEESGGG-TTCSSCCEEECTTSC
T ss_pred             CCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc-cCCCCHHHh-cCccCCCEEECCCCC
Confidence            355555555544432   122345555555555542 332211111 234555555555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.33  E-value=0.0014  Score=67.37  Aligned_cols=38  Identities=24%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             cCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644           29 MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus        29 ~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      ++++|++|+|++|...+.-.  .-..++++|++|+++++.
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCC--GGGGGCSSCCEEECTTCT
T ss_pred             cCCCCCEEECcCCCCCccCh--HHHhCCCCCCEEECcCCC
Confidence            45666666666664222110  112355666666666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.31  E-value=0.00085  Score=65.12  Aligned_cols=79  Identities=18%  Similarity=0.104  Sum_probs=55.1

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|+|+  .+-.-..++++|++|||+++. |+.  +. -..++++|++|+++++..++-..-..+ ..+++|
T Consensus       463 ~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l-~~l~~L  535 (567)
T 1dce_A          463 LLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNA-LEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPL-VSCPRL  535 (567)
T ss_dssp             TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGG-GGCTTC
T ss_pred             ccCcEeecCccccc--ccchhhhcCCCCCEEECCCCC-CCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH-hcCCCC
Confidence            58999999999776  222233579999999999984 664  44 345799999999999965443100112 358899


Q ss_pred             ceecCC
Q 025644           86 NDVEGD   91 (250)
Q Consensus        86 ~~L~~~   91 (250)
                      +.|+..
T Consensus       536 ~~L~L~  541 (567)
T 1dce_A          536 VLLNLQ  541 (567)
T ss_dssp             CEEECT
T ss_pred             CEEEec
Confidence            998544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.20  E-value=0.00066  Score=55.76  Aligned_cols=101  Identities=13%  Similarity=0.082  Sum_probs=62.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|+|++..- .+-.++++|++|+|+++. ++.-.- ....++++|++|+++++...+-.  ...-..+++|
T Consensus        52 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L  126 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQL  126 (208)
T ss_dssp             TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred             ccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCCCEEEcCCCcCcccC--HhHhccCCcC
Confidence            689999999997764221 123578999999999984 552211 12357899999999999654321  0112457889


Q ss_pred             ceecCCc--hhhhhhhccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      ++|+...  +.++.. ..-.++.+|+.|+
T Consensus       127 ~~L~l~~N~l~~~~~-~~~~~l~~L~~L~  154 (208)
T 2o6s_A          127 KDLRLYQNQLKSVPD-GVFDRLTSLQYIW  154 (208)
T ss_dssp             CEEECCSSCCSCCCT-TTTTTCTTCCEEE
T ss_pred             CEEECCCCccceeCH-HHhccCCCccEEE
Confidence            9885433  222211 1124566777775

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.20  E-value=0.0021  Score=60.18  Aligned_cols=72  Identities=19%  Similarity=0.235  Sum_probs=54.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|++.  .. ...+++|++|||++|. +++-.    ..++++|++|++++|..++-.    + ..+++|
T Consensus        42 ~~L~~L~Ls~n~l~~~--~~-l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~-~~l~~L  108 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM--TG-IEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTNLD----V-TPLTKL  108 (457)
T ss_dssp             TTCCEEECCSSCCCCC--TT-GGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSCCC----C-TTCTTC
T ss_pred             CCCCEEEccCCCcccC--hh-hcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCceee----c-CCCCcC
Confidence            6899999999977753  22 3579999999999994 66632    457899999999999765532    2 357888


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      ++|+.
T Consensus       109 ~~L~L  113 (457)
T 3bz5_A          109 TYLNC  113 (457)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            88744

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=96.16  E-value=0.0013  Score=60.48  Aligned_cols=100  Identities=12%  Similarity=0.068  Sum_probs=54.8

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN   86 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~   86 (250)
                      +|+.|+|++|.|++..... ..++++|++|||+++. |++.....+ .++++|+.|+++++...+-..  ..-..+++|+
T Consensus       225 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~  299 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLA-VRHLVYLRFLNLSYNP-ISTIEGSML-HELLRLQEIQLVGGQLAVVEP--YAFRGLNYLR  299 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHH-HTTCTTCCEEECCSSC-CCEECTTSC-TTCTTCCEEECCSSCCSEECT--TTBTTCTTCC
T ss_pred             cccEEECcCCcccccCHHH-hcCccccCeeECCCCc-CCccChhhc-cccccCCEEECCCCccceECH--HHhcCcccCC
Confidence            6777777777666443332 2467888888888874 543322222 467888888888875543210  0113467777


Q ss_pred             eecCCc--hhhhhhhccccccccccccc
Q 025644           87 DVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        87 ~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      .|+...  +..+... .-..+.+|+.|+
T Consensus       300 ~L~L~~N~l~~~~~~-~~~~l~~L~~L~  326 (477)
T 2id5_A          300 VLNVSGNQLTTLEES-VFHSVGNLETLI  326 (477)
T ss_dssp             EEECCSSCCSCCCGG-GBSCGGGCCEEE
T ss_pred             EEECCCCcCceeCHh-HcCCCcccCEEE
Confidence            774432  2221111 113456676664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=96.12  E-value=0.001  Score=57.10  Aligned_cols=121  Identities=11%  Similarity=0.040  Sum_probs=67.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|+...- .+..++++|++|+|+++. ++.-.. ....++++|++|+++++..+.-..  ..-..+++|
T Consensus        61 ~~L~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L  135 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPA-GIFKELKNLETLWVTDNK-LQALPI-GVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKL  135 (270)
T ss_dssp             TTCCEEECCSSCCSCCCT-TTTSSCTTCCEEECCSSC-CCCCCT-TTTTTCSSCCEEECCSSCCCCCCT--TTTTTCTTC
T ss_pred             CCCCEEECCCCccCeeCh-hhhcCCCCCCEEECCCCc-CCcCCH-hHcccccCCCEEECCCCccCeeCH--HHhCcCcCC
Confidence            688999999986663221 123568899999999884 543221 123568899999998886543210  112357888


Q ss_pred             ceecCCchhhhhhhc--cccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDSWEELVNTD--IGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~--i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++|+.... .+....  .-.++.+|+.|+..  .|+.-.-..+ .++++|+.
T Consensus       136 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~  185 (270)
T 2o6q_A          136 TYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKT  185 (270)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCE
T ss_pred             CEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHh-ccCCCcCE
Confidence            88754331 111111  11456677777532  2332211112 25677776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.10  E-value=0.003  Score=64.82  Aligned_cols=104  Identities=12%  Similarity=0.014  Sum_probs=62.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCH----HHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA----AGVSEFL---LHCHSLETLRCGGSPRSNHAARRCL   78 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD----~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l   78 (250)
                      .+|++|+|++|.++..-- ..-.++++|++|+|++|..++.    .++..+.   .++++|++|++++|..+.-.....+
T Consensus       491 ~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l  569 (876)
T 4ecn_A          491 KDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL  569 (876)
T ss_dssp             TTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred             CCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence            679999999984332111 2234689999999999976776    4444444   5667999999999965521100012


Q ss_pred             hhhCCCCceecCCchhhhhhhccccccccccccc
Q 025644           79 GILKPKLNDVEGDSWEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        79 ~~~cp~L~~L~~~s~~dl~~~~i~~g~~~L~~L~  112 (250)
                       ..+++|+.|+.... .+.....-.++++|+.|.
T Consensus       570 -~~L~~L~~L~Ls~N-~l~~lp~~~~L~~L~~L~  601 (876)
T 4ecn_A          570 -QKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLK  601 (876)
T ss_dssp             -TTCTTCCEEECTTS-CCCBCCCCCTTSEESEEE
T ss_pred             -hcCCCCCEEECCCC-CcccchhhcCCCcceEEE
Confidence             35788888744321 111111124456667665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.10  E-value=0.00066  Score=57.09  Aligned_cols=80  Identities=9%  Similarity=0.008  Sum_probs=42.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ..++.|+|++++|+...-..+-.++++|++|+|+++. |+.-.-. ...++++|++|+++++..+.-..  ..-..+++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L  107 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEG-AFEGASGVNEILLTSNRLENVQH--KMFKGLESL  107 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCG--GGGTTCSSC
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHH-HhCCCCCCCEEECCCCccCccCH--hHhcCCcCC
Confidence            3566777777755543211223467777777777763 4432111 12356777777777775432210  011346666


Q ss_pred             ceec
Q 025644           86 NDVE   89 (250)
Q Consensus        86 ~~L~   89 (250)
                      +.|+
T Consensus       108 ~~L~  111 (220)
T 2v70_A          108 KTLM  111 (220)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            6663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=96.09  E-value=0.0016  Score=61.56  Aligned_cols=124  Identities=11%  Similarity=0.010  Sum_probs=71.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|++..-..+ .++++|++|+|++|. ++.-.-.. ..++++|++|++++|...+-.. -..-..+++|
T Consensus        80 ~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~l-p~~~~~l~~L  155 (606)
T 3vq2_A           80 HHLSNLILTGNPIQSFSPGSF-SGLTSLENLVAVETK-LASLESFP-IGQLITLKKLNVAHNFIHSCKL-PAYFSNLTNL  155 (606)
T ss_dssp             TTCCEEECTTCCCCCCCTTSS-TTCTTCCEEECTTSC-CCCSSSSC-CTTCTTCCEEECCSSCCCCCCC-CGGGGTCTTC
T ss_pred             hhcCEeECCCCcccccChhhc-CCcccCCEEEccCCc-cccccccc-cCCCCCCCEEeCCCCcccceec-hHhHhhcCCC
Confidence            689999999996665432222 468899999999985 33221111 3568889999999886543110 0112357888


Q ss_pred             ceecCCc--hhh--------hhh-------hc--------cc---ccccccccccc--CCCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEE--------LVN-------TD--------IG---HGAQSLRWFVW--PNIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~d--------l~~-------~~--------i~---~g~~~L~~L~c--~~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++|+...  +.+        +..       ..        +.   -...+|+.|..  ..++.........+++.|++
T Consensus       156 ~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  233 (606)
T 3vq2_A          156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV  233 (606)
T ss_dssp             CEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred             CEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence            8874322  111        110       00        01   01125666653  35776777776778888876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.07  E-value=0.0012  Score=63.26  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=72.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++|+.|+|++|.|++.....+ .++++|++|+|++|. ++.  +......+|+|++|++++|..+.-.  ..+ ..+|+|
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~-~~l~~L  326 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNHLLHVE--RNQ-PQFDRL  326 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSSCCCCCG--GGH-HHHTTC
T ss_pred             CCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCCCCCccC--ccc-ccCCCC
Confidence            689999999997776533333 368999999999984 544  2233356899999999999654321  012 357888


Q ss_pred             ceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCce
Q 025644           86 NDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRII  132 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~  132 (250)
                      +.|+.... .+.... -..+++|+.|+..  .++...+..+...-+...
T Consensus       327 ~~L~L~~N-~l~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~  373 (597)
T 3oja_B          327 ENLYLDHN-SIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA  373 (597)
T ss_dssp             SEEECCSS-CCCCCC-CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred             CEEECCCC-CCCCcC-hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhc
Confidence            88854432 122121 2456677777532  355555655554444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=96.04  E-value=0.002  Score=58.54  Aligned_cols=82  Identities=16%  Similarity=0.150  Sum_probs=50.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHH-HHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~-La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      .+|++|+|++|.|++..-..+ .++++|++|+|++|. +++..+.. ...++++|++|+++++...+... ..+-..+++
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~  155 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRR  155 (455)
T ss_dssp             TTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCTT
T ss_pred             ccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCc-ccccCCCCc
Confidence            678888888886665433323 357888888888874 66544443 23467888888888885443210 011235677


Q ss_pred             CceecC
Q 025644           85 LNDVEG   90 (250)
Q Consensus        85 L~~L~~   90 (250)
                      |++|+.
T Consensus       156 L~~L~L  161 (455)
T 3v47_A          156 FHVLDL  161 (455)
T ss_dssp             CCEEEC
T ss_pred             ccEEeC
Confidence            777643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.01  E-value=0.0011  Score=56.34  Aligned_cols=80  Identities=13%  Similarity=0.124  Sum_probs=48.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|++..-. .-.++++|++|+|+++. ++.-.. ....++++|++|+++++..+.-.  ...-..+++|
T Consensus        59 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L  133 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAG-VFDDLTELGTLGLANNQ-LASLPL-GVFDHLTQLDKLYLGGNQLKSLP--SGVFDRLTKL  133 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred             ccCCEEECCCCcCCccCHh-HhccCCcCCEEECCCCc-ccccCh-hHhcccCCCCEEEcCCCcCCCcC--hhHhccCCcc
Confidence            6788999998866653221 12467888888888874 552211 12246788888888888544221  0112346777


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      +.|+.
T Consensus       134 ~~L~L  138 (251)
T 3m19_A          134 KELRL  138 (251)
T ss_dssp             CEEEC
T ss_pred             cEEEC
Confidence            77743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.00  E-value=0.002  Score=61.84  Aligned_cols=60  Identities=10%  Similarity=0.140  Sum_probs=29.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      .++++|+|++++|++..-..+ .++++|++|||++|. ++...-.. ..+|++|++|++++|.
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNT-ISKLEPEL-CQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGG-GGGTTCSEEECCSSC-CCCCCTTH-HHHCTTCCEEECCSSC
T ss_pred             CCCcEEECCCCCCCCcCHHHH-hCCCcCcEEECCCCc-cCccCHHH-HhcccCcCEEECCCCc
Confidence            456666666664443221112 245666666666652 33322111 2345666666666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=95.94  E-value=0.0041  Score=61.21  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=37.0

Q ss_pred             CCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCceecCCchhhhhhh-ccccccccc
Q 025644           30 CKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDVEGDSWEELVNT-DIGHGAQSL  108 (250)
Q Consensus        30 C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L~~~s~~dl~~~-~i~~g~~~L  108 (250)
                      .++|++|+|++| +|+.     +...+++|+.|+++++..++      |...+++|+.|+.... .+..+ ..-.++++|
T Consensus       220 ~~~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N~L~~------lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L  286 (622)
T 3g06_A          220 PSGLKELIVSGN-RLTS-----LPVLPSELKELMVSGNRLTS------LPMLPSGLLSLSVYRN-QLTRLPESLIHLSSE  286 (622)
T ss_dssp             CTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSS-CCCSCCGGGGGSCTT
T ss_pred             CCCCCEEEccCC-ccCc-----CCCCCCcCcEEECCCCCCCc------CCcccccCcEEeCCCC-CCCcCCHHHhhcccc
Confidence            355555566555 3443     11455666666666664332      1224556666533221 11100 001344556


Q ss_pred             cccccC--CCCHHHHHHHH
Q 025644          109 RWFVWP--NIDKDSIEMMS  125 (250)
Q Consensus       109 ~~L~c~--~ITD~sL~~La  125 (250)
                      +.|+..  .|+......+.
T Consensus       287 ~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          287 TTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CEEECCSCCCCHHHHHHHH
T ss_pred             CEEEecCCCCCCcCHHHHH
Confidence            665432  45555544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=95.93  E-value=0.0013  Score=55.45  Aligned_cols=100  Identities=13%  Similarity=0.077  Sum_probs=62.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|+|+...- .+-.++++|++|||+++ +|+.-. .....++++|++|+++++....-.  ..+ ..+++|
T Consensus        64 ~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~lp--~~~-~~l~~L  137 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVHLKELFMCCNKLTELP--RGI-ERLTHL  137 (229)
T ss_dssp             TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCSCC--TTG-GGCTTC
T ss_pred             cCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCC-cCCccC-hhHhCcchhhCeEeccCCcccccC--ccc-ccCCCC
Confidence            689999999996643221 12357899999999998 465321 112357899999999999654221  112 568899


Q ss_pred             ceecCCc--hhhhhhhccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      ++|+...  +..+.. ..-.++.+|+.|.
T Consensus       138 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~  165 (229)
T 3e6j_A          138 THLALDQNQLKSIPH-GAFDRLSSLTHAY  165 (229)
T ss_dssp             SEEECCSSCCCCCCT-TTTTTCTTCCEEE
T ss_pred             CEEECCCCcCCccCH-HHHhCCCCCCEEE
Confidence            9985432  222211 1124566777764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=95.85  E-value=0.0004  Score=69.51  Aligned_cols=81  Identities=11%  Similarity=0.023  Sum_probs=45.9

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      .+|++|||++| .++...-.. -.++++|++|||++|. |+...-.. ..++++|++|++++|..++...-...-..+++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  124 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSK-IYFLHPDA-FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA  124 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCC-CCEECTTS-SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred             ccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCc-CcccCHhH-ccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence            67888888888 433211111 2567888888888874 44322111 23678888888888865442100001134677


Q ss_pred             Cceec
Q 025644           85 LNDVE   89 (250)
Q Consensus        85 L~~L~   89 (250)
                      |++|+
T Consensus       125 L~~L~  129 (844)
T 3j0a_A          125 LTRLD  129 (844)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            77764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=95.82  E-value=0.0014  Score=57.47  Aligned_cols=58  Identities=10%  Similarity=0.118  Sum_probs=30.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      .+|++|+|+++.|+.....   ..+++|++|||+++. ++  .+.....++++|++|+++++..
T Consensus        55 ~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N~l  112 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFNRL  112 (290)
T ss_dssp             TTCCEEECTTSCCCEEECC---SCCTTCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCccCcccCC---CCCCcCCEEECCCCc-CC--cCchhhccCCCCCEEECCCCcC
Confidence            4666777777655542211   456666666666652 33  1222234556666666666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=95.82  E-value=0.006  Score=54.01  Aligned_cols=82  Identities=15%  Similarity=0.138  Sum_probs=57.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHH--HhcCCCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHHhh
Q 025644            6 SSWEILDISGSDVSDFGLVKV--AQMCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCLGI   80 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~l--a~~C~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l~~   80 (250)
                      .+|+.|+|++|.|++.....+  ...++.|+.++|+++ .+++.++..+.   .++++|++|+++++..++-.  ..+-.
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~--~~~~~  298 (353)
T 2z80_A          222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVP--DGIFD  298 (353)
T ss_dssp             TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC--TTTTT
T ss_pred             ccccEEECCCCccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccC--HHHHh
Confidence            679999999997766443333  245888999999998 58998888764   57899999999999654321  11224


Q ss_pred             hCCCCceecC
Q 025644           81 LKPKLNDVEG   90 (250)
Q Consensus        81 ~cp~L~~L~~   90 (250)
                      .+++|++|+.
T Consensus       299 ~l~~L~~L~L  308 (353)
T 2z80_A          299 RLTSLQKIWL  308 (353)
T ss_dssp             TCTTCCEEEC
T ss_pred             cCCCCCEEEe
Confidence            5788888744

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.79  E-value=0.0014  Score=58.95  Aligned_cols=79  Identities=14%  Similarity=0.061  Sum_probs=46.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ..++.|+|++++|++..-..+..++++|++|+|+++. |+.-.-.. ..++++|++|+++++....-..  ..-..+++|
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~-~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L  114 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEA-FVPVPNLRYLDLSSNHLHTLDE--FLFSDLQAL  114 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSCCCEECT--TTTTTCTTC
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhh-ccCCCCCCEEECCCCcCCcCCH--HHhCCCcCC
Confidence            4577888888876664444344467888888888873 54322111 2367788888888775433210  011245666


Q ss_pred             cee
Q 025644           86 NDV   88 (250)
Q Consensus        86 ~~L   88 (250)
                      +.|
T Consensus       115 ~~L  117 (361)
T 2xot_A          115 EVL  117 (361)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=95.73  E-value=0.00094  Score=53.54  Aligned_cols=101  Identities=14%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++|+.|+|++++|+...- ..-.++++|++|+|+++ +++.-.- ....++++|++|+++++..+.-.  ...-..+++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHENKLQSLP--NGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred             CCCcEEEeCCCcccEeCH-HHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCCCccccC--HHHhhCCccc
Confidence            689999999996663221 12256899999999998 4652211 12257899999999999654321  0112357888


Q ss_pred             ceecCCc--hhhhhhhccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      ++|+...  ++.+.. .+-.++.+|+.|+
T Consensus       103 ~~L~l~~N~l~~~~~-~~~~~l~~L~~L~  130 (177)
T 2o6r_A          103 KELALDTNQLKSVPD-GIFDRLTSLQKIW  130 (177)
T ss_dssp             CEEECCSSCCSCCCT-TTTTTCTTCCEEE
T ss_pred             CEEECcCCcceEeCH-HHhcCCcccCEEE
Confidence            8875432  221111 1124567777775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=95.57  E-value=0.0035  Score=56.17  Aligned_cols=76  Identities=18%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|++..  .....+++|++|||++|. ++.  +..-...+++|++|++++|..++-.     ...+++|
T Consensus       272 ~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L  341 (390)
T 3o6n_A          272 QRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTL  341 (390)
T ss_dssp             SSCCEEECCSSCCCEEE--CSSSCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCC
T ss_pred             ccCCEEECCCCcCcccC--cccCCCCCCCEEECCCCc-cee--cCccccccCcCCEEECCCCccceeC-----chhhccC
Confidence            68999999999776532  223568999999999984 552  2222356899999999999765542     3457888


Q ss_pred             ceecCC
Q 025644           86 NDVEGD   91 (250)
Q Consensus        86 ~~L~~~   91 (250)
                      +.|+..
T Consensus       342 ~~L~l~  347 (390)
T 3o6n_A          342 KNLTLS  347 (390)
T ss_dssp             SEEECC
T ss_pred             CEEEcC
Confidence            887543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=95.55  E-value=0.0024  Score=55.99  Aligned_cols=80  Identities=13%  Similarity=0.091  Sum_probs=56.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ++|+.|+|++|.|++.....+ .++++|++|+|++|. +++.....+ .++++|+.|++++|..+.-.  .. -..+++|
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~lp--~~-l~~l~~L  265 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNS-ISAVDNGSL-ANTPHLRELHLNNNKLVKVP--GG-LADHKYI  265 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSC-CCEECTTTG-GGSTTCCEEECCSSCCSSCC--TT-TTTCSSC
T ss_pred             ccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCc-CceeChhhc-cCCCCCCEEECCCCcCccCC--hh-hccCCCc
Confidence            689999999998776544333 468999999999984 655332222 46899999999999655321  01 2357888


Q ss_pred             ceecCC
Q 025644           86 NDVEGD   91 (250)
Q Consensus        86 ~~L~~~   91 (250)
                      +.|+..
T Consensus       266 ~~L~l~  271 (330)
T 1xku_A          266 QVVYLH  271 (330)
T ss_dssp             CEEECC
T ss_pred             CEEECC
Confidence            887543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.55  E-value=0.0018  Score=64.59  Aligned_cols=77  Identities=13%  Similarity=0.055  Sum_probs=49.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|++  |..-..++++|++|+|+++ +|+  .|-.-..++++|++|+|+++.++.--  ..+ ..+++|
T Consensus       224 ~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp--~~~-~~l~~L  295 (727)
T 4b8c_D          224 QLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLTSLP--AEL-GSCFQL  295 (727)
T ss_dssp             CCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCSSCC--SSG-GGGTTC
T ss_pred             CCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCCccC--hhh-cCCCCC
Confidence            678899999985542  1111227889999999988 465  23222367889999999988654210  012 346788


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      +.|+.
T Consensus       296 ~~L~L  300 (727)
T 4b8c_D          296 KYFYF  300 (727)
T ss_dssp             SEEEC
T ss_pred             CEEEC
Confidence            88744

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=95.52  E-value=0.0051  Score=60.55  Aligned_cols=53  Identities=15%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      ++|+.|+|++|+|+.     |...+++|++|||++|. |+.     |-...++|++|++++|..
T Consensus        61 ~~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~-l~~-----lp~~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-----LPALPPELRTLEVSGNQ-LTS-----LPVLPPGLLELSIFSNPL  113 (622)
T ss_dssp             TTCSEEEECSCCCSC-----CCCCCTTCCEEEECSCC-CSC-----CCCCCTTCCEEEECSCCC
T ss_pred             CCCcEEEecCCCCCC-----CCCcCCCCCEEEcCCCc-CCc-----CCCCCCCCCEEECcCCcC
Confidence            467777777775552     22256677777777763 442     112556666666666643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=95.36  E-value=0.0023  Score=54.59  Aligned_cols=82  Identities=12%  Similarity=0.060  Sum_probs=52.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|++.....+ .++++|++|++++|. ++.-.-.. ..++++|++|+++++...+...- ..-..+++|
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L  151 (276)
T 2z62_A           76 SHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNL  151 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTC
T ss_pred             cCCCEEECCCCccCccChhhh-cCCccccEEECCCCC-ccccCchh-cccCCCCCEEECcCCccceecCc-hhhccCCCC
Confidence            689999999997765443323 468999999999884 33221111 34688999999998865431100 012357888


Q ss_pred             ceecCC
Q 025644           86 NDVEGD   91 (250)
Q Consensus        86 ~~L~~~   91 (250)
                      ++|+..
T Consensus       152 ~~L~Ls  157 (276)
T 2z62_A          152 EHLDLS  157 (276)
T ss_dssp             CEEECC
T ss_pred             CEEECC
Confidence            887543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=95.30  E-value=0.0016  Score=57.28  Aligned_cols=62  Identities=10%  Similarity=0.071  Sum_probs=46.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN   71 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d   71 (250)
                      .+|+.|+|++|.|++..-..+ .++++|++|+|++|. ++  .+..-..++++|++|+++++..++
T Consensus       217 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          217 SKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNK-LS--RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             TTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSC-CC--BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCc-Ce--ecChhhhcCccCCEEECCCCCCCc
Confidence            689999999997665432222 478999999999984 65  222224679999999999997654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=95.29  E-value=0.0023  Score=61.51  Aligned_cols=34  Identities=12%  Similarity=0.347  Sum_probs=14.2

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC   41 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C   41 (250)
                      +|++|+|++|.|+...-..+ .+|++|++|+|++|
T Consensus        74 ~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n  107 (680)
T 1ziw_A           74 MLKVLNLQHNELSQLSDKTF-AFCTNLTELHLMSN  107 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSS
T ss_pred             CcCEEECCCCccCccChhhh-ccCCCCCEEECCCC
Confidence            45555555553332111111 23455555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=95.27  E-value=0.0064  Score=59.03  Aligned_cols=82  Identities=9%  Similarity=0.075  Sum_probs=46.1

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCH----HHHHHHH--HhCCCCCEEecCCCCCCcHHHHHHHh
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA----AGVSEFL--LHCHSLETLRCGGSPRSNHAARRCLG   79 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD----~gl~~La--~~C~~L~~L~l~gC~~~dd~al~~l~   79 (250)
                      .+|++|+|++|.++..-- ..-.++++|++|||++|..++.    .++..+.  ..|++|++|++++|..+.-.....+ 
T Consensus       249 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-  326 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-  326 (636)
T ss_dssp             TTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-
T ss_pred             CCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-
Confidence            568888888884432111 1123577888888888865776    2232221  2467888888888755421000011 


Q ss_pred             hhCCCCceec
Q 025644           80 ILKPKLNDVE   89 (250)
Q Consensus        80 ~~cp~L~~L~   89 (250)
                      ..+++|+.|+
T Consensus       327 ~~l~~L~~L~  336 (636)
T 4eco_A          327 QKMKKLGMLE  336 (636)
T ss_dssp             TTCTTCCEEE
T ss_pred             ccCCCCCEEe
Confidence            2466777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=95.14  E-value=0.01  Score=57.89  Aligned_cols=53  Identities=21%  Similarity=0.270  Sum_probs=25.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      .+|++|+|++|+|+.  +-   ..+++|++|+|++| +|+.  |..   -+.+|++|+++++..
T Consensus        80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N-~l~~--ip~---l~~~L~~L~Ls~N~l  132 (571)
T 3cvr_A           80 PQITVLEITQNALIS--LP---ELPASLEYLDACDN-RLST--LPE---LPASLKHLDVDNNQL  132 (571)
T ss_dssp             TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCCCcc--cc---cccCCCCEEEccCC-CCCC--cch---hhcCCCEEECCCCcC
Confidence            346666666664442  11   34566666666665 2332  211   112555555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=95.14  E-value=0.002  Score=56.74  Aligned_cols=77  Identities=14%  Similarity=0.037  Sum_probs=41.1

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN   86 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~   86 (250)
                      +|+.|+|++|.++...-..+. .++ |++|+|++|. +++. +.....++++|++|+++++..+....  . ...+++|+
T Consensus       175 ~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~--~-~~~l~~L~  247 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLG--K-VGLSKNLN  247 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGG-GCC-CSEEECCSSE-EEEC-CGGGCCTTSCCSEEECCSSEECCBGG--G-CCCCTTCC
T ss_pred             cCcEEECcCCeeeccCChHHh-CCc-ccEEECcCCc-ccCc-CCHHHhcCCCCCEEECCCCceeeecC--c-ccccCCCC
Confidence            678888888754432222222 233 7777777763 4332 11222457777777777775442211  0 23456777


Q ss_pred             eecC
Q 025644           87 DVEG   90 (250)
Q Consensus        87 ~L~~   90 (250)
                      +|+.
T Consensus       248 ~L~L  251 (313)
T 1ogq_A          248 GLDL  251 (313)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.12  E-value=0.0033  Score=50.77  Aligned_cols=59  Identities=12%  Similarity=0.176  Sum_probs=27.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHH-HHHhCCCCCEEecCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGSP   68 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~-La~~C~~L~~L~l~gC~   68 (250)
                      .+|++|+|++++|+...-. .-.++++|++|||+++. |+.  +.. +-.++++|++|+++++.
T Consensus        30 ~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~--l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQ-LTV--LPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSC-CCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCC-cCc--cChhhccCCCCCCEEECCCCc
Confidence            4556666666643321111 11245566666666652 331  111 11345666666666553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.11  E-value=0.0036  Score=52.53  Aligned_cols=101  Identities=9%  Similarity=-0.006  Sum_probs=62.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|+++.|+...-.. -.++++|++|+|+++. |+.-.-. ...++++|++|+++++....-..  ..-..+++|
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L  131 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGA-FEGASGVNEILLTSNR-LENVQHK-MFKGLESLKTLMLRSNRITCVGN--DSFIGLSSV  131 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC-CCCCCGG-GGTTCSSCCEEECTTSCCCCBCT--TSSTTCTTC
T ss_pred             CCCCEEECCCCcCCEECHHH-hCCCCCCCEEECCCCc-cCccCHh-HhcCCcCCCEEECCCCcCCeECH--hHcCCCccC
Confidence            68999999999776533222 2468999999999984 4432211 22578999999999996543210  011357888


Q ss_pred             ceecCCc--hhhhhhhccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      +.|+...  +..+....+ .++++|+.|+
T Consensus       132 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~  159 (220)
T 2v70_A          132 RLLSLYDNQITTVAPGAF-DTLHSLSTLN  159 (220)
T ss_dssp             SEEECTTSCCCCBCTTTT-TTCTTCCEEE
T ss_pred             CEEECCCCcCCEECHHHh-cCCCCCCEEE
Confidence            8875432  222211112 3456777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.64  E-value=0.0084  Score=52.85  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=11.0

Q ss_pred             CCHHHHHHHHhcCCCCCeEecCC
Q 025644           18 VSDFGLVKVAQMCKSLKAVDISC   40 (250)
Q Consensus        18 ITD~gL~~la~~C~~L~~LdLS~   40 (250)
                      +.......+...|++|+.|+|++
T Consensus       213 l~~~~~~~l~~~~~~L~~l~L~~  235 (329)
T 3sb4_A          213 LDNADFKLIRDYMPNLVSLDISK  235 (329)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECTT
T ss_pred             ecHHHHHHHHHhcCCCeEEECCC
Confidence            33444444444455555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=94.63  E-value=0.0057  Score=49.71  Aligned_cols=60  Identities=12%  Similarity=0.132  Sum_probs=33.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHH-HHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~-La~~C~~L~~L~l~gC~~   69 (250)
                      .+|+.|+|++++|+...- ..-.++++|++|+|+++ +|+.  +.. +..++++|++|+++++..
T Consensus        33 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSN-KLTA--IPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCC-CCCc--cChhHhCCcchhhEEECCCCcc
Confidence            567777777775443211 11235677777777776 3443  111 124567777777777643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.55  E-value=0.015  Score=51.14  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=16.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC   41 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C   41 (250)
                      .+|+.|+|.. .|+.-+-.+ -.+|++|+.|+|+..
T Consensus       101 ~~L~~l~L~~-~i~~I~~~a-F~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAA-FKGCDNLKICQIRKK  134 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTT-TTTCTTCCEEEBCCS
T ss_pred             CCCcEEECCc-cccchhHHH-hhcCcccceEEcCCC
Confidence            4566666665 332211111 135677777776554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.36  E-value=0.0057  Score=48.90  Aligned_cols=80  Identities=9%  Similarity=-0.022  Sum_probs=53.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.|+...- ..-.++++|++|+|+++. |+.-.- ....++++|++|+++++..+.-.  ..+-..+++|
T Consensus        52 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L  126 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENK-LQSLPN-GVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSL  126 (177)
T ss_dssp             TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTC
T ss_pred             ccccEEECCCCcceEeCh-hHccCCCccCEEECCCCC-ccccCH-HHhhCCcccCEEECcCCcceEeC--HHHhcCCccc
Confidence            689999999996663221 122478999999999984 552211 12356899999999999654321  1122457888


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      ++|..
T Consensus       127 ~~L~l  131 (177)
T 2o6r_A          127 QKIWL  131 (177)
T ss_dssp             CEEEC
T ss_pred             CEEEe
Confidence            88744

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=94.27  E-value=0.0086  Score=48.26  Aligned_cols=63  Identities=11%  Similarity=0.099  Sum_probs=44.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCc
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSN   71 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~d   71 (250)
                      .+|++|+|++++|+...- .+-.++++|++|+|+++. |+.-.- ....++++|++|++++.+...
T Consensus        54 ~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           54 TQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQ-LKSIPR-GAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCc-cCEeCH-HHhcCCCCCCEEEeCCCCCCC
Confidence            689999999997663211 122578999999999984 552111 123578999999999987643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=94.26  E-value=0.0068  Score=53.00  Aligned_cols=76  Identities=20%  Similarity=0.214  Sum_probs=46.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+++.|+|+++.|+...-..+ .++++|++|+|+++. |+.-...   .++++|++|+++++....-.   .....+++|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~L~Ls~N~l~~l~---~~~~~l~~L  102 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAE-LTKLQVD---GTLPVLGTLDLSHNQLQSLP---LLGQTLPAL  102 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTSC-CCEEECC---SCCTTCCEEECCSSCCSSCC---CCTTTCTTC
T ss_pred             CCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCCc-cCcccCC---CCCCcCCEEECCCCcCCcCc---hhhccCCCC
Confidence            578888888886665433222 357888888888874 5542221   57788888888887543211   112346677


Q ss_pred             ceec
Q 025644           86 NDVE   89 (250)
Q Consensus        86 ~~L~   89 (250)
                      +.|.
T Consensus       103 ~~L~  106 (290)
T 1p9a_G          103 TVLD  106 (290)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            7763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=94.20  E-value=0.0077  Score=49.64  Aligned_cols=100  Identities=13%  Similarity=-0.040  Sum_probs=61.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++++|+...  ....++++|++|||+++. |+.-.-. .-.++++|++|+++++..+.-..  ..-..+++|
T Consensus        31 ~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~--~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNNR-ISTLSNQ-SFSNMTQLLTLILSYNRLRCIPP--RTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTC
T ss_pred             CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCCc-CCEeCHh-HccCCCCCCEEECCCCccCEeCH--HHhCCCCCC
Confidence            58999999999776432  234679999999999984 5532211 12478999999999996543210  011357888


Q ss_pred             ceecCCc--hhhhhhhccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      +.|+...  +..+... .-.++.+|+.|.
T Consensus       105 ~~L~L~~N~l~~~~~~-~~~~l~~L~~L~  132 (193)
T 2wfh_A          105 RLLSLHGNDISVVPEG-AFNDLSALSHLA  132 (193)
T ss_dssp             CEEECCSSCCCBCCTT-TTTTCTTCCEEE
T ss_pred             CEEECCCCCCCeeChh-hhhcCccccEEE
Confidence            8875432  2211111 113456677764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=94.19  E-value=0.036  Score=53.71  Aligned_cols=62  Identities=11%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             CCcCEEEccCCC-CCH----HHHHHHH--hcCCCCCeEecCCCCCcCHHHHHH--HHHhCCCCCEEecCCCCCC
Q 025644            6 SSWEILDISGSD-VSD----FGLVKVA--QMCKSLKAVDISCCDRITAAGVSE--FLLHCHSLETLRCGGSPRS   70 (250)
Q Consensus         6 ~~L~~LnLsgC~-ITD----~gL~~la--~~C~~L~~LdLS~C~~ITD~gl~~--La~~C~~L~~L~l~gC~~~   70 (250)
                      .+|++|+|++|. ++.    .++..+.  .++++|++|+|++|. ++  .+..  ...++++|++|++++|...
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence            689999999995 998    3333332  357999999999984 66  4544  5567899999999998655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=94.13  E-value=0.008  Score=50.34  Aligned_cols=114  Identities=13%  Similarity=0.057  Sum_probs=66.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|+|+...-.. -.++++|++|+|+++. |+.-. ..+..++++|++|+++++....-..  ..-..+++|
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L  130 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNK-ITELP-KSLFEGLFSLQLLLLNANKINCLRV--DAFQDLHNL  130 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTC
T ss_pred             CCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCc-CCccC-HhHccCCCCCCEEECCCCCCCEeCH--HHcCCCCCC
Confidence            68999999999776432222 2468999999999984 55211 1123578999999999996543210  012357888


Q ss_pred             ceecCCc--hhhhhhhcccccccccccccc---CCCCHHHHHHHH
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVW---PNIDKDSIEMMS  125 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c---~~ITD~sL~~La  125 (250)
                      +.|+...  +..+....+ .++.+|+.|+.   +...|..+..+.
T Consensus       131 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~~~c~c~l~~l~  174 (220)
T 2v9t_B          131 NLLSLYDNKLQTIAKGTF-SPLRAIQTMHLAQNPFICDCHLKWLA  174 (220)
T ss_dssp             CEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             CEEECCCCcCCEECHHHH-hCCCCCCEEEeCCCCcCCCCccHHHH
Confidence            8874432  222221111 34566666642   233344444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=94.13  E-value=0.011  Score=49.75  Aligned_cols=79  Identities=13%  Similarity=0.057  Sum_probs=54.0

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|+|+...- .+-.++++|++|+|+++. |+  .+..-..++++|++|+++++....-..  ..-..+++|
T Consensus        88 ~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L  161 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNK-LT--ELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSL  161 (229)
T ss_dssp             TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CC--SCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTC
T ss_pred             CCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCc-cc--ccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCC
Confidence            689999999997763221 123478999999999984 65  232223789999999999996543210  112356788


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      +.|..
T Consensus       162 ~~L~l  166 (229)
T 3e6j_A          162 THAYL  166 (229)
T ss_dssp             CEEEC
T ss_pred             CEEEe
Confidence            88743

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=94.10  E-value=0.022  Score=53.12  Aligned_cols=32  Identities=19%  Similarity=0.167  Sum_probs=14.3

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCC   41 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C   41 (250)
                      +|++|+|++|.++.  +.. -.++++|++|++++|
T Consensus       174 ~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          174 SLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNN  205 (454)
T ss_dssp             TCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred             cccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCC
Confidence            45555555553332  111 133444555555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=94.07  E-value=0.014  Score=48.10  Aligned_cols=71  Identities=10%  Similarity=0.045  Sum_probs=37.3

Q ss_pred             CEEEccCCCCCHHHHHHHHh-cCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCce
Q 025644            9 EILDISGSDVSDFGLVKVAQ-MCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLND   87 (250)
Q Consensus         9 ~~LnLsgC~ITD~gL~~la~-~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~   87 (250)
                      +.+++++++|+.     |.. -.++|++|+|+++ +|+.  +.....++++|++|+++++..++-..  ..-..+++|+.
T Consensus        13 ~~l~~~~~~l~~-----ip~~~~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~--~~f~~l~~L~~   82 (193)
T 2wfh_A           13 TVVRCSNKGLKV-----LPKGIPRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLSN--QSFSNMTQLLT   82 (193)
T ss_dssp             TEEECTTSCCSS-----CCSCCCTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred             CEEEcCCCCCCc-----CCCCCCCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeCH--hHccCCCCCCE
Confidence            456666664442     111 2356777777776 3442  21233567777777777775433210  01124566776


Q ss_pred             ec
Q 025644           88 VE   89 (250)
Q Consensus        88 L~   89 (250)
                      |.
T Consensus        83 L~   84 (193)
T 2wfh_A           83 LI   84 (193)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=93.89  E-value=0.003  Score=55.58  Aligned_cols=62  Identities=11%  Similarity=0.026  Sum_probs=41.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCC-CCCEEecCCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCH-SLETLRCGGSPRS   70 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~-~L~~L~l~gC~~~   70 (250)
                      .+|++|+|++|.|+...-.. ...+++|++|+|++|. ++...-..+. .++ +|++|+++++..+
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~-l~~~~p~~l~-~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR-ISGAIPDSYG-SFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC-CEEECCGGGG-CCCTTCCEEECCSSEEE
T ss_pred             CCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCc-ccCcCCHHHh-hhhhcCcEEECcCCeee
Confidence            68999999999555321111 2468999999999985 5532222333 344 8999999998543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=93.77  E-value=0.014  Score=47.37  Aligned_cols=62  Identities=11%  Similarity=0.125  Sum_probs=44.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHH-HHHHhCCCCCEEecCCCCCCc
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVS-EFLLHCHSLETLRCGGSPRSN   71 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~-~La~~C~~L~~L~l~gC~~~d   71 (250)
                      .+|++|+|++++|+..-- .+-.++++|++|||+++. |+.  +. ....++++|++|++++.+...
T Consensus        57 ~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~-l~~--l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           57 VNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLNDNH-LKS--IPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cCCCEEECCCCCCCccCh-hHhCCcchhhEEECCCCc-cce--eCHHHhccccCCCEEEeCCCCccc
Confidence            689999999997664211 123578999999999974 552  21 123568999999999987543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=93.68  E-value=0.0097  Score=49.82  Aligned_cols=102  Identities=13%  Similarity=0.046  Sum_probs=63.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++++|+...-. .-.++++|++|+|+++. |+.-.-.. ..++++|++|+++++..+.-.  ..+-..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~--~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQ-ISELAPDA-FQGLRSLNSLVLYGNKITELP--KSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSC-CCEECTTT-TTTCSSCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCc-CCCcCHHH-hhCCcCCCEEECCCCcCCccC--HhHccCCCCC
Confidence            5899999999977643222 22468999999999984 55321111 246899999999999654321  0122457889


Q ss_pred             ceecCCc--hhhhhhhcccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVW  113 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c  113 (250)
                      +.|+...  +..+....+ .++.+|++|+.
T Consensus       107 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  135 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDAF-QDLHNLNLLSL  135 (220)
T ss_dssp             CEEECCSSCCCCCCTTTT-TTCTTCCEEEC
T ss_pred             CEEECCCCCCCEeCHHHc-CCCCCCCEEEC
Confidence            9885433  222211111 35677888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=93.37  E-value=0.0081  Score=49.14  Aligned_cols=102  Identities=8%  Similarity=-0.001  Sum_probs=61.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|+++.|+...-..+...+++|++|+|+++. |+.-.- ....++++|++|+++++..+.-..  ..-..+++|
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L  104 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQLGENKIKEISN--KMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSCCCCEECS--SSSTTCTTC
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCH-hHcCCcccCCEEECCCCcCCccCH--HHhcCCCCC
Confidence            4899999999966543322234678999999999984 553211 123468999999999996544310  011347888


Q ss_pred             ceecCCc--hhhhhhhccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      ++|+...  +..+....+ ....+|++|+
T Consensus       105 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~  132 (192)
T 1w8a_A          105 KTLNLYDNQISCVMPGSF-EHLNSLTSLN  132 (192)
T ss_dssp             CEEECCSSCCCEECTTSS-TTCTTCCEEE
T ss_pred             CEEECCCCcCCeeCHHHh-hcCCCCCEEE
Confidence            8874432  222111111 3455677764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=93.37  E-value=0.012  Score=58.59  Aligned_cols=59  Identities=17%  Similarity=0.182  Sum_probs=31.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      .+|++|+|++|.|+  .+-.-..++++|++|||+++. |+  .|-.-..++++|++|+|+++.+
T Consensus       247 ~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSCFQLKYFYFFDNMV  305 (727)
T ss_dssp             CSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGGTTCSEEECCSSCC
T ss_pred             CCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCCCCCCEEECCCCCC
Confidence            45667777776554  121112456667777777663 44  2222224566666666666643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=93.36  E-value=0.0094  Score=48.75  Aligned_cols=37  Identities=5%  Similarity=-0.053  Sum_probs=19.0

Q ss_pred             CCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCC
Q 025644           32 SLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPR   69 (250)
Q Consensus        32 ~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~   69 (250)
                      +|++|+++++ +|+.-.-..+..++++|++|+++++..
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l   66 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQL   66 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCC
Confidence            5666666665 243222111234566666666666643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=92.00  E-value=0.061  Score=52.44  Aligned_cols=13  Identities=8%  Similarity=0.043  Sum_probs=6.2

Q ss_pred             cCCCCCeEecCCC
Q 025644           29 MCKSLKAVDISCC   41 (250)
Q Consensus        29 ~C~~L~~LdLS~C   41 (250)
                      .+++|++|+|+++
T Consensus       138 ~l~~L~~L~Ls~N  150 (571)
T 3cvr_A          138 LPALLEYINADNN  150 (571)
T ss_dssp             CCTTCCEEECCSS
T ss_pred             cCccccEEeCCCC
Confidence            3444555555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=91.94  E-value=0.062  Score=50.09  Aligned_cols=69  Identities=14%  Similarity=0.156  Sum_probs=45.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|.++.     +....++|++|+++++. ++.     +...+++|++|++++|..+.-      ...+++|
T Consensus       297 ~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~L~~N~l~~l------p~~l~~L  359 (454)
T 1jl5_A          297 PNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNK-LIE-----LPALPPRLERLIASFNHLAEV------PELPQNL  359 (454)
T ss_dssp             TTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSCC------CCCCTTC
T ss_pred             CcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCc-ccc-----ccccCCcCCEEECCCCccccc------cchhhhc
Confidence            466777777775554     22223589999999974 553     333478999999999965531      2257788


Q ss_pred             ceecCC
Q 025644           86 NDVEGD   91 (250)
Q Consensus        86 ~~L~~~   91 (250)
                      ++|+..
T Consensus       360 ~~L~L~  365 (454)
T 1jl5_A          360 KQLHVE  365 (454)
T ss_dssp             CEEECC
T ss_pred             cEEECC
Confidence            887543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=91.79  E-value=0.011  Score=49.27  Aligned_cols=75  Identities=8%  Similarity=-0.070  Sum_probs=46.9

Q ss_pred             EEEccCC-CCCHHHHHHHHhcCCCCC-eEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC-CCcHHHHHHHhhhC-CCC
Q 025644           10 ILDISGS-DVSDFGLVKVAQMCKSLK-AVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP-RSNHAARRCLGILK-PKL   85 (250)
Q Consensus        10 ~LnLsgC-~ITD~gL~~la~~C~~L~-~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~-~~dd~al~~l~~~c-p~L   85 (250)
                      +|+|++| .|+...-..+ .++++|+ +|+++++. ++.-.-.. ... ++|+.|++++++ ..+-. - ..-..+ ++|
T Consensus       134 ~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n~-l~~i~~~~-~~~-~~L~~L~L~~n~~l~~i~-~-~~~~~l~~~L  207 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNNG-FTSVQGYA-FNG-TKLDAVYLNKNKYLTVID-K-DAFGGVYSGP  207 (239)
T ss_dssp             EEEEESCTTCCEECTTTT-TTTBSSEEEEECCSCC-CCEECTTT-TTT-CEEEEEECTTCTTCCEEC-T-TTTTTCSBCC
T ss_pred             EEECCCCcchhhcCcccc-cchhcceeEEEcCCCC-CcccCHhh-cCC-CCCCEEEcCCCCCcccCC-H-HHhhccccCC
Confidence            9999999 8876433222 3689999 99999874 55322111 122 789999999995 44321 0 111245 788


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      +.|+.
T Consensus       208 ~~L~l  212 (239)
T 2xwt_C          208 SLLDV  212 (239)
T ss_dssp             SEEEC
T ss_pred             cEEEC
Confidence            88744

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=89.18  E-value=0.076  Score=46.59  Aligned_cols=62  Identities=11%  Similarity=0.043  Sum_probs=38.2

Q ss_pred             CCcCEEEccC-CCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644            6 SSWEILDISG-SDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS   70 (250)
Q Consensus         6 ~~L~~LnLsg-C~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~   70 (250)
                      .+|+.|+|++ +.|+..--. .-.++++|++|||+++ +|+.--- ..-.++++|+.|+|++..++
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSSCCS
T ss_pred             CCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCCccc
Confidence            4688888886 555432111 1236888888888887 3543111 12246888888888887543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=87.51  E-value=0.047  Score=48.54  Aligned_cols=61  Identities=10%  Similarity=0.035  Sum_probs=37.5

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS   70 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~   70 (250)
                      .++.|+|++++|+..  ..-+....+|+.|+++++.+++.-.-. +-.++++|++|+++++..+
T Consensus       155 ~l~~L~L~~N~i~~i--~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          155 ESVILWLNKNGIQEI--HNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SCEEEECCSSCCCEE--CTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTSCCC
T ss_pred             hhhhhccccccccCC--ChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCCCcC
Confidence            467788888766532  112224567888888877666542211 1246788888888887543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=84.63  E-value=0.19  Score=44.01  Aligned_cols=62  Identities=18%  Similarity=0.137  Sum_probs=41.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHH-HHHhCCCCCEEecCCCCCCcH
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGSPRSNH   72 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~-La~~C~~L~~L~l~gC~~~dd   72 (250)
                      .+|+.|+|++|+|+..--. .-.++++|++|||++.. ++.  +.. +.... .|+.|++.+.+...+
T Consensus        56 ~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~--~~~~~~~~~-~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           56 GELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNA-LES--LSWKTVQGL-SLQELVLSGNPLHCS  118 (347)
T ss_dssp             CCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSC-CSC--CCSTTTCSC-CCCEEECCSSCCCCC
T ss_pred             cCCCEEECCCCccceeCHH-HhcCCcCCCEEeCCCCc-cce--eCHHHcccC-CceEEEeeCCCccCC
Confidence            7899999999966642111 22579999999999974 542  111 11223 399999998876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	250
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 9  EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGV---SEFLLHCHSLETL 62
          + LDI   ++SD    ++  + +  + V +  C  +T A     S  L    +L  L
Sbjct: 5  QSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.86
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.01
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.0
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.72
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.56
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.53
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.09
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.35
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.27
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.17
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.09
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.17
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.15
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.63
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	95.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.32
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	92.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	91.09
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	90.45
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	89.57
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	88.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	88.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	87.04
d2ifga3	156	High affinity nerve growth factor receptor, N-term	84.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	84.09
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	80.71

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.4e-22  Score=174.53  Aligned_cols=160  Identities=17%  Similarity=0.201  Sum_probs=131.6

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHH-HHHhCCCCCEEecCCC-CCCcHHHHHHHhhhC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSE-FLLHCHSLETLRCGGS-PRSNHAARRCLGILK   82 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~-La~~C~~L~~L~l~gC-~~~dd~al~~l~~~c   82 (250)
                      ++|++|+|++| +|||.|+..++++||+|++|||++|.++||.|+.. ++..|++|+.|+++|| ..+++.++..+..+|
T Consensus        95 ~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~  174 (284)
T d2astb2          95 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC  174 (284)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred             CCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccc
Confidence            68999999999 99999999999999999999999999999999965 5566789999999998 467888888899999


Q ss_pred             CCCceecCCchhhh---hhhccccccccccccc---cCCCCHHHHHHHHhcCCCcee--cCCCCCCCcCCccCCCCCCCC
Q 025644           83 PKLNDVEGDSWEEL---VNTDIGHGAQSLRWFV---WPNIDKDSIEMMSTECPRIIV--NPKPSPFGFRGFEVPREAFPD  154 (250)
Q Consensus        83 p~L~~L~~~s~~dl---~~~~i~~g~~~L~~L~---c~~ITD~sL~~La~~Cp~L~~--~~~cs~~~~~g~~~~~~~l~~  154 (250)
                      |+|++|+...+..+   ....++ .+++|++|+   |.+|||.++..++ +||+|+.  ..+|  +++.|.....+++|+
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~--~~d~~l~~l~~~lp~  250 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPH  250 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTT
T ss_pred             ccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC--CCHHHHHHHHHhCcc
Confidence            99999976554433   333343 567888874   8899999999886 6999998  4445  677777777788999


Q ss_pred             CcCCCccccccCcCc
Q 025644          155 ITLDDPFVNDIDPSA  169 (250)
Q Consensus       155 ~~l~~~~~~~i~~~~  169 (250)
                      +.+++..+.++.+.+
T Consensus       251 L~i~~~~ls~~~~~~  265 (284)
T d2astb2         251 LQINCSHFTTIARPT  265 (284)
T ss_dssp             SEESCCCSCCTTCSS
T ss_pred             ccccCccCCCCCCCc
Confidence            999999988876533

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.2e-19  Score=156.04  Aligned_cols=136  Identities=14%  Similarity=0.209  Sum_probs=74.1

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|||++|.|++.++..+..+|++|++|+|++| .++|.++..+++ |++|++|++++|..+++.++..+...||+|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCccccccccc-CCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhc
Confidence            356666666666666666666666666666666666 366666666553 556666666666555555555555666666


Q ss_pred             ceecCCchhhhhh----hccccccccccccc---c-CCCCHHHHHHHHhcCCCcee--cCCCCCCCcC
Q 025644           86 NDVEGDSWEELVN----TDIGHGAQSLRWFV---W-PNIDKDSIEMMSTECPRIIV--NPKPSPFGFR  143 (250)
Q Consensus        86 ~~L~~~s~~dl~~----~~i~~g~~~L~~L~---c-~~ITD~sL~~La~~Cp~L~~--~~~cs~~~~~  143 (250)
                      ++|+...+..++.    ..++..++.|+.|+   | .+|||.++..+..+||+|+.  ...|..+++.
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~  191 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND  191 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch
Confidence            6665443322211    12333444454442   2 34666666666666666665  3334444433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.1e-10  Score=97.72  Aligned_cols=118  Identities=12%  Similarity=0.151  Sum_probs=84.0

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHHhhh--
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCLGIL--   81 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l~~~--   81 (250)
                      +|+.|||++.+|||.++..+...+++|+.|+|++| +|||.|+..|+   ..|++|+.|+++++..++ .+...+...  
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~-~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-HHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCCh-HHHHHHHHHHh
Confidence            57889997778999999988888999999999998 48998888887   688899999998886544 445556543  


Q ss_pred             --CCCCceecCCc--hhhhhhhccc---cccccccccccC--CCCHHHHHHHHh
Q 025644           82 --KPKLNDVEGDS--WEELVNTDIG---HGAQSLRWFVWP--NIDKDSIEMMST  126 (250)
Q Consensus        82 --cp~L~~L~~~s--~~dl~~~~i~---~g~~~L~~L~c~--~ITD~sL~~La~  126 (250)
                        .++|++|+...  +++.....++   ..+++|++|+..  .|+|.+...+..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~  134 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  134 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhh
Confidence              35788875543  2333222222   456677777633  588877776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.00  E-value=3.4e-09  Score=84.54  Aligned_cols=108  Identities=12%  Similarity=0.053  Sum_probs=79.7

Q ss_pred             CCCcCEEEccCC-CCCHHHHHHHHh---cCCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHH
Q 025644            5 DSSWEILDISGS-DVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRC   77 (250)
Q Consensus         5 d~~L~~LnLsgC-~ITD~gL~~la~---~C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~   77 (250)
                      +++|+.|+|+++ .|+|.|+..+++   .++.|++|+|++| ++++.|+.+|+.   +++.|+.|++++|...+++ ..+
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g-~~~   93 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-ILA   93 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-HHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchh-HHH
Confidence            488999999997 899999998886   6889999999998 799999998874   6789999999998877775 344


Q ss_pred             Hhhh---CCCCceecCCchhhhhhhccccccccccccccCCCCHHHHHHHHh---cCCCcee
Q 025644           78 LGIL---KPKLNDVEGDSWEELVNTDIGHGAQSLRWFVWPNIDKDSIEMMST---ECPRIIV  133 (250)
Q Consensus        78 l~~~---cp~L~~L~~~s~~dl~~~~i~~g~~~L~~L~c~~ITD~sL~~La~---~Cp~L~~  133 (250)
                      +...   ++.|+.+..+                   ++...|+|.+..+|+.   .|+.|+.
T Consensus        94 l~~~l~~~~~L~~l~L~-------------------l~~n~i~~~~~~~La~~L~~n~~L~~  136 (166)
T d1io0a_          94 LVEALQSNTSLIELRID-------------------NQSQPLGNNVEMEIANMLEKNTTLLK  136 (166)
T ss_dssp             HHHGGGGCSSCCEEECC-------------------CCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred             HHHHHHhCccccEEeec-------------------cCCCcCcHHHHHHHHHHHHhCCCcCE
Confidence            4432   2333322110                   1234788888777765   6777766

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.2e-09  Score=90.26  Aligned_cols=127  Identities=16%  Similarity=0.141  Sum_probs=85.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHH---hcCCCCCeEecCCCCCcCHHHHHHHHH----hCCCCCEEecCCCCCCcHHHHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVA---QMCKSLKAVDISCCDRITAAGVSEFLL----HCHSLETLRCGGSPRSNHAARRCL   78 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la---~~C~~L~~LdLS~C~~ITD~gl~~La~----~C~~L~~L~l~gC~~~dd~al~~l   78 (250)
                      ..|+.+++++|.+++.++..++   ..+++|++||||++ +|+|.|+..+++    +++.|++|++++|..++. ++.+|
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~-~~~~l  389 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS-SCSSL  389 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH-HHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCCCChH-HHHHH
Confidence            5788999999988888888776   46788999999987 699999988875    456799999999976554 34444


Q ss_pred             h---hhCCCCceecCCc--hhhhhhhcccc----cccccccccc--CCCCH---HHHHHHHhcCCCceec
Q 025644           79 G---ILKPKLNDVEGDS--WEELVNTDIGH----GAQSLRWFVW--PNIDK---DSIEMMSTECPRIIVN  134 (250)
Q Consensus        79 ~---~~cp~L~~L~~~s--~~dl~~~~i~~----g~~~L~~L~c--~~ITD---~sL~~La~~Cp~L~~~  134 (250)
                      +   ..+++|++|+...  +.+.....++.    ....|+.|..  ..+++   ..++.+.+.=|+|+++
T Consensus       390 ~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         390 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            3   3478888875432  33333333322    2225666653  23444   4455556777888774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.72  E-value=6e-08  Score=77.86  Aligned_cols=82  Identities=12%  Similarity=0.112  Sum_probs=65.1

Q ss_pred             CCCcCEEEccCC-CCCHHHHHHHHh---cCCCCCeEecCCCCCcCHHHHHHHHH---hCCCCCEEecCCCCCCcHHHHHH
Q 025644            5 DSSWEILDISGS-DVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFLL---HCHSLETLRCGGSPRSNHAARRC   77 (250)
Q Consensus         5 d~~L~~LnLsgC-~ITD~gL~~la~---~C~~L~~LdLS~C~~ITD~gl~~La~---~C~~L~~L~l~gC~~~dd~al~~   77 (250)
                      +++|+.|||+++ .|+|.|+..++.   .++.|++|+|++| .++|.|+.+++.   .++.|++|++++|...+++ ...
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g-~~~   91 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LAR   91 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHH-HHH
Confidence            378999999998 899999998876   4678999999998 599999998884   5899999999999766654 445


Q ss_pred             Hhhh---CCCCcee
Q 025644           78 LGIL---KPKLNDV   88 (250)
Q Consensus        78 l~~~---cp~L~~L   88 (250)
                      |...   ++.|++|
T Consensus        92 l~~aL~~n~sL~~L  105 (167)
T d1pgva_          92 LLRSTLVTQSIVEF  105 (167)
T ss_dssp             HHHHTTTTCCCSEE
T ss_pred             HHHHHHhCCcCCEE
Confidence            5433   3445444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.63  E-value=9.5e-08  Score=83.05  Aligned_cols=127  Identities=13%  Similarity=0.210  Sum_probs=89.3

Q ss_pred             CCCcCEEEccCCCCCHHHHHHHHh---cCCCCCeEecCCCCCcCHHHHHHH----HHhCCCCCEEecCCCCCCcHHHHHH
Q 025644            5 DSSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEF----LLHCHSLETLRCGGSPRSNHAARRC   77 (250)
Q Consensus         5 d~~L~~LnLsgC~ITD~gL~~la~---~C~~L~~LdLS~C~~ITD~gl~~L----a~~C~~L~~L~l~gC~~~dd~al~~   77 (250)
                      .+.|+.|+++++.++|.|+..++.   .++.|+.|+|++| +|++.|+..+    ...+++|++|++++++.++.. ...
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g-~~~  234 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-SSA  234 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-HHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccccccccc-ccc
Confidence            367888999888899988887764   4788999999998 5899887653    246888999999888755543 334


Q ss_pred             Hh---hhCCCCceecCCc--hhhhhhhcccc-----ccccccccc--cCCCCHHHHHHHHh----cCCCcee
Q 025644           78 LG---ILKPKLNDVEGDS--WEELVNTDIGH-----GAQSLRWFV--WPNIDKDSIEMMST----ECPRIIV  133 (250)
Q Consensus        78 l~---~~cp~L~~L~~~s--~~dl~~~~i~~-----g~~~L~~L~--c~~ITD~sL~~La~----~Cp~L~~  133 (250)
                      ++   ..+|+|++|+...  +.+.....++.     ....|+.|+  +-+|+++++..+..    +++.|+.
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~  306 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  306 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCE
Confidence            43   5678888875433  22322333332     234677775  45799999887774    6888887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.56  E-value=1.3e-07  Score=82.11  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=80.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHH-H---hcCCCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCCCCCcHHHHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKV-A---QMCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGSPRSNHAARRCL   78 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~l-a---~~C~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC~~~dd~al~~l   78 (250)
                      ..|+.|+|++|+|+|.|+..+ .   ..+++|++|||++| .||+.|+..|+   ..|++|++|++++|...+..+ ..+
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~-~~l  263 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA-AAV  263 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-HHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCccCchhh-HHH
Confidence            679999999999999987653 3   46899999999998 59999998887   588999999999998776643 344


Q ss_pred             hh-----hCCCCceecCCc--hhhhhhhccc----ccccccccccc--CCC--CHHHHHHHH
Q 025644           79 GI-----LKPKLNDVEGDS--WEELVNTDIG----HGAQSLRWFVW--PNI--DKDSIEMMS  125 (250)
Q Consensus        79 ~~-----~cp~L~~L~~~s--~~dl~~~~i~----~g~~~L~~L~c--~~I--TD~sL~~La  125 (250)
                      +.     ..+.|++|+...  +.+.....++    ..+..|+.|..  -.+  .|..+..+.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~~~~l~  325 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR  325 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHH
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchHHHHHH
Confidence            32     235688874432  2332222222    24567887753  234  344554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.53  E-value=1.8e-07  Score=74.90  Aligned_cols=83  Identities=12%  Similarity=0.143  Sum_probs=66.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHh---cCCCCCeEecCCCCCcCHHHHHHHHHh---CCCCCEEecCCCC--CCcHHHHHH
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFLLH---CHSLETLRCGGSP--RSNHAARRC   77 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~---~C~~L~~LdLS~C~~ITD~gl~~La~~---C~~L~~L~l~gC~--~~dd~al~~   77 (250)
                      .+|+.|+|++|.|+|.|+.+++.   .++.|++|+|++| +|++.|+..|++.   ++.|++|+++++.  ..++.+...
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            78999999999999999998885   4899999999999 6999999999865   5679999999873  344555445


Q ss_pred             Hhh---hCCCCceec
Q 025644           78 LGI---LKPKLNDVE   89 (250)
Q Consensus        78 l~~---~cp~L~~L~   89 (250)
                      |+.   ..+.|+.|.
T Consensus       123 l~~~L~~n~sL~~l~  137 (167)
T d1pgva_         123 MMMAIEENESLLRVG  137 (167)
T ss_dssp             HHHHHHHCSSCCEEE
T ss_pred             HHHHHHhCCCccEee
Confidence            543   367777663

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.52  E-value=3.5e-07  Score=72.48  Aligned_cols=85  Identities=15%  Similarity=0.169  Sum_probs=70.4

Q ss_pred             CCCcCEEEccCCCCCHHHHHHHHh---cCCCCCeEecCCCCCcCHHHHHHHH---HhCCCCCEEecCCC-CCCcHHHHHH
Q 025644            5 DSSWEILDISGSDVSDFGLVKVAQ---MCKSLKAVDISCCDRITAAGVSEFL---LHCHSLETLRCGGS-PRSNHAARRC   77 (250)
Q Consensus         5 d~~L~~LnLsgC~ITD~gL~~la~---~C~~L~~LdLS~C~~ITD~gl~~La---~~C~~L~~L~l~gC-~~~dd~al~~   77 (250)
                      .++|+.|+|++|+|+|.|+.+|+.   ..+.|+.|++++| .+++.|+..|+   ..++.|+.+++..| ..+++.+..+
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            378999999999999999999876   4899999999998 59999999999   56788998888877 4566666666


Q ss_pred             Hhh---hCCCCceecC
Q 025644           78 LGI---LKPKLNDVEG   90 (250)
Q Consensus        78 l~~---~cp~L~~L~~   90 (250)
                      |+.   .++.|+.|..
T Consensus       124 La~~L~~n~~L~~L~l  139 (166)
T d1io0a_         124 IANMLEKNTTLLKFGY  139 (166)
T ss_dssp             HHHHHHHCSSCCEEEC
T ss_pred             HHHHHHhCCCcCEEeC
Confidence            664   6788888743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.4e-07  Score=73.18  Aligned_cols=120  Identities=17%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      ..|+.|||+||+||.-  ..+...+++|++||||++ +|++-  .. ..++++|++|++++|..++-.  ..+...+|+|
T Consensus        18 ~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N-~i~~l--~~-~~~l~~L~~L~ls~N~i~~l~--~~~~~~l~~L   89 (162)
T d1a9na_          18 VRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN-EIRKL--DG-FPLLRRLKTLLVNNNRICRIG--EGLDQALPDL   89 (162)
T ss_dssp             TSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS-CCCEE--CC-CCCCSSCCEEECCSSCCCEEC--SCHHHHCTTC
T ss_pred             CcCcEEECCCCCCCcc--CccccccccCCEEECCCC-CCCcc--CC-cccCcchhhhhcccccccCCC--cccccccccc
Confidence            3688999999976653  345678999999999998 46642  12 257899999999999764421  1234568999


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHH--HHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDS--IEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~s--L~~La~~Cp~L~~  133 (250)
                      ++|....  +.++.....-.++++|+.|+..  .|++..  ...+...||+|++
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~  143 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV  143 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCe
Confidence            9985433  2222221222467788887642  233222  1234457888887

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=2.3e-06  Score=68.19  Aligned_cols=110  Identities=10%  Similarity=0.032  Sum_probs=74.4

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|||++|+|++-  .. -.++++|++|+|++|. |+.-+ ..+..++++|++|+++++...+-..+..+ ..+|+|
T Consensus        41 ~~L~~L~Ls~N~i~~l--~~-~~~l~~L~~L~ls~N~-i~~l~-~~~~~~l~~L~~L~L~~N~i~~~~~l~~l-~~l~~L  114 (162)
T d1a9na_          41 DQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNR-ICRIG-EGLDQALPDLTELILTNNSLVELGDLDPL-ASLKSL  114 (162)
T ss_dssp             TCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSC-CCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGG-GGCTTC
T ss_pred             ccCCEEECCCCCCCcc--CC-cccCcchhhhhccccc-ccCCC-ccccccccccccceecccccccccccccc-cccccc
Confidence            6799999999977753  11 2578999999999995 55422 12457899999999999977654323333 358999


Q ss_pred             ceecCCc--hhhhhh--hccccccccccccccCCCCHHHH
Q 025644           86 NDVEGDS--WEELVN--TDIGHGAQSLRWFVWPNIDKDSI  121 (250)
Q Consensus        86 ~~L~~~s--~~dl~~--~~i~~g~~~L~~L~c~~ITD~sL  121 (250)
                      ++|...+  +++...  ..+-..+++|++|+-..||++-.
T Consensus       115 ~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~~er  154 (162)
T d1a9na_         115 TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  154 (162)
T ss_dssp             CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             chhhcCCCccccccchHHHHHHHCCCcCeeCCCCCCHHHH
Confidence            9986544  222221  11224467899998777887643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.74  E-value=1.3e-05  Score=64.59  Aligned_cols=112  Identities=12%  Similarity=0.119  Sum_probs=72.9

Q ss_pred             CCcCEEEccCCCCCH-HHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGSDVSD-FGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD-~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      .+|+.|++++|+|++ .|+    +.+++|++||+++| +||+-  .. ..++++|++|++++|...+-..   + ..+++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l----~~l~nL~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~---l-~~l~~  107 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGV----EYLNNLTQINFSNN-QLTDI--TP-LKNLTKLVDILMNNNQIADITP---L-ANLTN  107 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTG----GGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCCCCCGG---G-TTCTT
T ss_pred             cCCCEEECCCCCCCCcccc----ccCCCcCcCccccc-cccCc--cc-ccCCcccccccccccccccccc---c-ccccc
Confidence            689999999998776 232    46999999999998 57653  22 4589999999999996655332   2 36788


Q ss_pred             CceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           85 LNDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        85 L~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      |+.|...... ......-.++++|++|++.  +|++  +..+ .++++|+.
T Consensus       108 L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~--~~~l-~~~~~L~~  154 (199)
T d2omxa2         108 LTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISD--ISAL-SGLTSLQQ  154 (199)
T ss_dssp             CSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCC--CGGG-TTCTTCSE
T ss_pred             cccccccccc-cccccccchhhhhHHhhhhhhhhcc--cccc-cccccccc
Confidence            8887543321 1111122456778877643  3433  2222 36777777

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=9.4e-06  Score=64.27  Aligned_cols=44  Identities=14%  Similarity=0.198  Sum_probs=20.8

Q ss_pred             HhcCCCCCeEecCCCCCcCH-HHHHHHHHhCCCCCEEecCCCCCCc
Q 025644           27 AQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSN   71 (250)
Q Consensus        27 a~~C~~L~~LdLS~C~~ITD-~gl~~La~~C~~L~~L~l~gC~~~d   71 (250)
                      ...|+.|++||||++. ||+ .++.....+|++|+.|+++|....+
T Consensus        61 ~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          61 EENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKS  105 (162)
T ss_dssp             HHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred             HHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCcccc
Confidence            3445555555555542 333 2333444455555555555554433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.51  E-value=6e-05  Score=61.19  Aligned_cols=113  Identities=10%  Similarity=0.009  Sum_probs=74.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|++++|.|++.  .. .+.+++|++|+|++| +|++  +..+ .++++|++|++++|..++-.   . -..+|+|
T Consensus        46 ~~L~~L~l~~~~i~~l--~~-l~~l~~L~~L~L~~n-~i~~--l~~~-~~l~~L~~L~l~~n~i~~l~---~-l~~l~~L  114 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGN-KLTD--IKPL-ANLKNLGWLFLDENKVKDLS---S-LKDLKKL  114 (210)
T ss_dssp             HTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSS-CCCC--CGGG-TTCTTCCEEECCSSCCCCGG---G-GTTCTTC
T ss_pred             cCccEEECcCCCCCCc--hh-HhhCCCCCEEeCCCc-cccC--cccc-ccCccccccccccccccccc---c-ccccccc
Confidence            4789999999976653  11 257999999999998 5775  3333 57999999999999776532   1 2347889


Q ss_pred             ceecCCchhhhhhhcccccccccccccc--CCCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDSWEELVNTDIGHGAQSLRWFVW--PNIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~i~~g~~~L~~L~c--~~ITD~sL~~La~~Cp~L~~  133 (250)
                      +.|....... .....-.++..|+++.+  ..|++..   ...++++|++
T Consensus       115 ~~L~l~~~~~-~~~~~l~~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~  160 (210)
T d1h6ta2         115 KSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDT  160 (210)
T ss_dssp             CEEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSE
T ss_pred             cccccccccc-cccccccccccccccccccccccccc---cccccccccc
Confidence            8885543211 11111245566777754  3566543   2347888888

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.47  E-value=2.4e-05  Score=62.96  Aligned_cols=113  Identities=12%  Similarity=0.070  Sum_probs=75.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|+||+..  . ..++++|++|++++|...+-.+    ..+++.|+.|++++|.......    -..+++|
T Consensus        62 ~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~----~~~l~~L  130 (199)
T d2omxa2          62 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQITDIDP----LKNLTNL  130 (199)
T ss_dssp             TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGG----GTTCTTC
T ss_pred             CCcCcCccccccccCcc--c-ccCCcccccccccccccccccc----cccccccccccccccccccccc----cchhhhh
Confidence            68999999999887632  2 3579999999999996544333    3589999999999996554321    2358899


Q ss_pred             ceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      +.|...+. .+.....-.++.+|+.|.+.  +|++-  ..+ .++++|+.
T Consensus       131 ~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~n~l~~l--~~l-~~l~~L~~  176 (199)
T d2omxa2         131 NRLELSSN-TISDISALSGLTSLQQLNFSSNQVTDL--KPL-ANLTTLER  176 (199)
T ss_dssp             SEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCC--GGG-TTCTTCCE
T ss_pred             HHhhhhhh-hhcccccccccccccccccccccccCC--ccc-cCCCCCCE
Confidence            99855432 12212222466778887643  45552  223 37788877

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.46  E-value=3e-05  Score=66.14  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=26.3

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS   70 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~   70 (250)
                      .++.++++.|.+++.  . -...+++|++|+++++ ++++-  .. ..++|+|++|++++|..+
T Consensus       286 ~l~~l~~~~n~l~~~--~-~~~~~~~l~~L~ls~n-~l~~l--~~-l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         286 ALTNLELNENQLEDI--S-PISNLKNLTYLTLYFN-NISDI--SP-VSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             TCSEEECCSSCCSCC--G-GGGGCTTCSEEECCSS-CCSCC--GG-GGGCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccc--c-ccchhcccCeEECCCC-CCCCC--cc-cccCCCCCEEECCCCCCC
Confidence            345555555544431  1 1244555555555555 34431  11 234555555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.37  E-value=6.9e-06  Score=67.25  Aligned_cols=119  Identities=9%  Similarity=0.041  Sum_probs=74.8

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|++|+|++.  ..+ .++++|++|||++|. |++  +..+...+++|++|+++++..++-..   + ..+++|
T Consensus        48 ~~L~~L~Ls~n~I~~i--~~l-~~l~~L~~L~Ls~N~-i~~--i~~~~~~~~~L~~L~l~~N~i~~l~~---~-~~l~~L  117 (198)
T d1m9la_          48 KACKHLALSTNNIEKI--SSL-SGMENLRILSLGRNL-IKK--IENLDAVADTLEELWISYNQIASLSG---I-EKLVNL  117 (198)
T ss_dssp             TTCCEEECSEEEESCC--CCH-HHHTTCCEEECCEEE-ECS--CSSHHHHHHHCCEEECSEEECCCHHH---H-HHHHHS
T ss_pred             cccceeECcccCCCCc--ccc-cCCccccChhhcccc-ccc--cccccccccccccccccccccccccc---c-cccccc
Confidence            5789999999866652  122 378999999999984 664  22344556789999999997665432   2 346778


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccCC--CC---------HHHHHHHHhcCCCceec
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWPN--ID---------KDSIEMMSTECPRIIVN  134 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~~--IT---------D~sL~~La~~Cp~L~~~  134 (250)
                      +.|+...  ++++.....-.++++|+.|+...  |+         ..-...+..++|+|+..
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~L  179 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEE
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEe
Confidence            8874432  23332222225677888876321  11         11123456689999884

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=2.3e-05  Score=59.62  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=45.3

Q ss_pred             CEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCcee
Q 025644            9 EILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLNDV   88 (250)
Q Consensus         9 ~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~~L   88 (250)
                      ++|+|++++||+-.  .+ .++++|++||++++ +|++  +..-..++++|++|+++++..++-.   .+ ..+|+|++|
T Consensus         1 R~L~Ls~n~l~~l~--~l-~~l~~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~---~~-~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HL-EQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNALENVD---GV-ANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSCC--CG-GGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSCCCCCG---GG-TTCSSCCEE
T ss_pred             CEEEcCCCCCCCCc--cc-ccCCCCCEEECCCC-ccCc--chhhhhhhhcccccccccccccccC---cc-ccccccCeE
Confidence            46888888766442  23 56788888888886 3553  2111346888888888887654432   12 356777776


Q ss_pred             cC
Q 025644           89 EG   90 (250)
Q Consensus        89 ~~   90 (250)
                      +.
T Consensus        71 ~l   72 (124)
T d1dcea3          71 LL   72 (124)
T ss_dssp             EC
T ss_pred             EC
Confidence            43

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.27  E-value=6.9e-05  Score=60.91  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=32.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCH-HHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITA-AGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD-~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      ..+..+.+++|.+++..   --.++++|++|++++|. +++ .+    ..++++|+.|++++|...+-.   .+ ..+|+
T Consensus       129 ~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~-~~~~~~----l~~l~~L~~L~Ls~n~l~~l~---~l-~~l~~  196 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQ-VSDLTP----LANLSKLTTLKADDNKISDIS---PL-ASLPN  196 (227)
T ss_dssp             TTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSSCCCCCG---GG-GGCTT
T ss_pred             cchhhhhchhhhhchhh---hhccccccccccccccc-cccchh----hcccccceecccCCCccCCCh---hh-cCCCC
Confidence            34455555555332211   02345556666665553 222 11    134556666666555433321   11 23555


Q ss_pred             CceecC
Q 025644           85 LNDVEG   90 (250)
Q Consensus        85 L~~L~~   90 (250)
                      |+.|+.
T Consensus       197 L~~L~L  202 (227)
T d1h6ua2         197 LIEVHL  202 (227)
T ss_dssp             CCEEEC
T ss_pred             CCEEEC
Confidence            555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.25  E-value=8.1e-05  Score=63.33  Aligned_cols=73  Identities=12%  Similarity=0.123  Sum_probs=56.0

Q ss_pred             CCcCEEEccCCCCCH-HHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCC
Q 025644            6 SSWEILDISGSDVSD-FGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPK   84 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD-~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~   84 (250)
                      .+|+.|++++|+|++ +|+    .++++|++||++++ +||+-.  . ..++++|++|++++|...+-..   + ..+++
T Consensus        44 ~~l~~L~l~~~~I~~l~gl----~~L~nL~~L~Ls~N-~l~~l~--~-l~~L~~L~~L~L~~n~i~~i~~---l-~~l~~  111 (384)
T d2omza2          44 DQVTTLQADRLGIKSIDGV----EYLNNLTQINFSNN-QLTDIT--P-LKNLTKLVDILMNNNQIADITP---L-ANLTN  111 (384)
T ss_dssp             TTCCEEECCSSCCCCCTTG----GGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCCGG---G-TTCTT
T ss_pred             CCCCEEECCCCCCCCcccc----ccCCCCCEEeCcCC-cCCCCc--c-ccCCcccccccccccccccccc---c-ccccc
Confidence            589999999998887 454    46899999999998 587632  2 4579999999999998765321   2 35788


Q ss_pred             CceecC
Q 025644           85 LNDVEG   90 (250)
Q Consensus        85 L~~L~~   90 (250)
                      |+.|+.
T Consensus       112 L~~L~~  117 (384)
T d2omza2         112 LTGLTL  117 (384)
T ss_dssp             CCEEEC
T ss_pred             cccccc
Confidence            888743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.17  E-value=6.7e-05  Score=61.11  Aligned_cols=106  Identities=15%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.|++.  ..+...++.|++|+++++ +|++  +.. ..++++|++|+++++..++-..+..+. .+|+|
T Consensus        70 ~~L~~L~Ls~N~i~~i--~~~~~~~~~L~~L~l~~N-~i~~--l~~-~~~l~~L~~L~L~~N~i~~~~~~~~l~-~l~~L  142 (198)
T d1m9la_          70 ENLRILSLGRNLIKKI--ENLDAVADTLEELWISYN-QIAS--LSG-IEKLVNLRVLYMSNNKITNWGEIDKLA-ALDKL  142 (198)
T ss_dssp             TTCCEEECCEEEECSC--SSHHHHHHHCCEEECSEE-ECCC--HHH-HHHHHHSSEEEESEEECCCHHHHHHHT-TTTTC
T ss_pred             ccccChhhcccccccc--cccccccccccccccccc-cccc--ccc-ccccccccccccccchhcccccccccc-CCCcc
Confidence            5788899988866652  123334567888888887 5765  233 345788888888888766644344443 47888


Q ss_pred             ceecCCc--hhhhhh---------hccccccccccccccCCCCH
Q 025644           86 NDVEGDS--WEELVN---------TDIGHGAQSLRWFVWPNIDK  118 (250)
Q Consensus        86 ~~L~~~s--~~dl~~---------~~i~~g~~~L~~L~c~~ITD  118 (250)
                      +.|...+  +.....         ..+-..+++|++|+-..|++
T Consensus       143 ~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~  186 (198)
T d1m9la_         143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV  186 (198)
T ss_dssp             SEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTT
T ss_pred             ceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCH
Confidence            8875443  221110         00123466777777555553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.16  E-value=0.00018  Score=58.29  Aligned_cols=113  Identities=13%  Similarity=0.136  Sum_probs=74.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|.||+..  .+ ..+++|++|++++| +|++  +.. ..++++|+.|++++|...+-..    -..+++|
T Consensus        68 ~~L~~L~L~~n~i~~l~--~~-~~l~~L~~L~l~~n-~i~~--l~~-l~~l~~L~~L~l~~~~~~~~~~----l~~l~~l  136 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTDIK--PL-ANLKNLGWLFLDEN-KVKD--LSS-LKDLKKLKSLSLEHNGISDING----LVHLPQL  136 (210)
T ss_dssp             TTCCEEECCSSCCCCCG--GG-TTCTTCCEEECCSS-CCCC--GGG-GTTCTTCCEEECTTSCCCCCGG----GGGCTTC
T ss_pred             CCCCEEeCCCccccCcc--cc-ccCccccccccccc-cccc--ccc-cccccccccccccccccccccc----ccccccc
Confidence            68999999999887632  33 47999999999998 5775  333 3568999999999997654321    2357788


Q ss_pred             ceecCCchhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDSWEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      +.+.... ..+........+.+|+.+.+.  +|++  +..+ .++++|+.
T Consensus       137 ~~l~~~~-n~l~~~~~~~~l~~L~~l~l~~n~l~~--i~~l-~~l~~L~~  182 (210)
T d1h6ta2         137 ESLYLGN-NKITDITVLSRLTKLDTLSLEDNQISD--IVPL-AGLTKLQN  182 (210)
T ss_dssp             CEEECCS-SCCCCCGGGGGCTTCSEEECCSSCCCC--CGGG-TTCTTCCE
T ss_pred             ccccccc-ccccccccccccccccccccccccccc--cccc-cCCCCCCE
Confidence            8774322 112222233456778877643  4543  2223 47888887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00025  Score=55.67  Aligned_cols=119  Identities=14%  Similarity=0.073  Sum_probs=61.8

Q ss_pred             CCCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCC
Q 025644            5 DSSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKP   83 (250)
Q Consensus         5 d~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp   83 (250)
                      |...+.||+++. ...+  +    .....+..++.+.   .-...+..+..+|++|++|+++++..++-..+......+|
T Consensus        21 ~~~~~~Ldls~l~~~~~--l----~~~~~~~~l~~~~---~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~   91 (162)
T d1koha1          21 DGSQQALDLKGLRSDPD--L----VAQNIDVVLNRRS---SMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP   91 (162)
T ss_dssp             CSSSCCBCCCCCSSCTT--T----TTTTCCCCTTSHH---HHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHST
T ss_pred             chhhCeeecccCCCCch--h----hhccchhhcchhh---hHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCC
Confidence            455677777776 2221  1    1122233333222   1234455566788888888888887665433333345688


Q ss_pred             CCceecCCc--hhhhhhhccccccccccccccC------CCC--HHHHHHHHhcCCCcee
Q 025644           84 KLNDVEGDS--WEELVNTDIGHGAQSLRWFVWP------NID--KDSIEMMSTECPRIIV  133 (250)
Q Consensus        84 ~L~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~------~IT--D~sL~~La~~Cp~L~~  133 (250)
                      +|+.|+...  ++++....... ...|+.|...      ...  ..-...+...+|+|++
T Consensus        92 ~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~  150 (162)
T d1koha1          92 NLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLR  150 (162)
T ss_dssp             TCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCE
T ss_pred             cccccccccCccccchhhhhhh-ccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCE
Confidence            888874322  23322211112 2245555432      222  2345567778888888

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=8.9e-05  Score=56.20  Aligned_cols=79  Identities=16%  Similarity=0.116  Sum_probs=56.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|||+++.|++-- ..+ .++++|+.|+++++ +|++  +.. ..++++|++|+++++...+-..+..+ ..+|+|
T Consensus        20 ~~L~~L~ls~N~l~~lp-~~~-~~l~~L~~L~l~~N-~i~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l-~~~~~L   92 (124)
T d1dcea3          20 LLVTHLDLSHNRLRALP-PAL-AALRCLEVLQASDN-ALEN--VDG-VANLPRLQELLLCNNRLQQSAAIQPL-VSCPRL   92 (124)
T ss_dssp             TTCCEEECCSSCCCCCC-GGG-GGCTTCCEEECCSS-CCCC--CGG-GTTCSSCCEEECCSSCCCSSSTTGGG-GGCTTC
T ss_pred             CCCCEEECCCCccCcch-hhh-hhhhcccccccccc-cccc--cCc-cccccccCeEECCCCccCCCCCchhh-cCCCCC
Confidence            68999999999766421 123 46999999999997 4664  233 35799999999999976544322233 458999


Q ss_pred             ceecCC
Q 025644           86 NDVEGD   91 (250)
Q Consensus        86 ~~L~~~   91 (250)
                      +.|+..
T Consensus        93 ~~L~l~   98 (124)
T d1dcea3          93 VLLNLQ   98 (124)
T ss_dssp             CEEECT
T ss_pred             CEEECC
Confidence            998543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.17  E-value=0.0024  Score=51.32  Aligned_cols=111  Identities=15%  Similarity=0.173  Sum_probs=71.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|++++|.+++..  . -...+.+..+.+++|.-....+    ..++++|++|++++|...+...   + ..+|+|
T Consensus       107 ~~L~~l~l~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~---l-~~l~~L  175 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---L-ANLSKL  175 (227)
T ss_dssp             TTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---G-TTCTTC
T ss_pred             ccccccccccccccccc--h-hccccchhhhhchhhhhchhhh----hccccccccccccccccccchh---h-cccccc
Confidence            67899999998444321  1 2467889999998885332222    3578999999999987655432   2 458899


Q ss_pred             ceecCCc--hhhhhhhccccccccccccccC--CCCHHHHHHHHhcCCCcee
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVWP--NIDKDSIEMMSTECPRIIV  133 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c~--~ITD~sL~~La~~Cp~L~~  133 (250)
                      ++|+...  ++++..   -.++++|++|+..  +||+-.  .+ .++++|++
T Consensus       176 ~~L~Ls~n~l~~l~~---l~~l~~L~~L~Ls~N~lt~i~--~l-~~l~~L~~  221 (227)
T d1h6ua2         176 TTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS--PL-ANTSNLFI  221 (227)
T ss_dssp             CEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG--GG-TTCTTCCE
T ss_pred             eecccCCCccCCChh---hcCCCCCCEEECcCCcCCCCc--cc-ccCCCCCE
Confidence            9986543  233221   2567788888632  566532  23 47788776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.15  E-value=0.0011  Score=54.99  Aligned_cols=12  Identities=25%  Similarity=0.263  Sum_probs=5.9

Q ss_pred             CCCCCeEecCCC
Q 025644           30 CKSLKAVDISCC   41 (250)
Q Consensus        30 C~~L~~LdLS~C   41 (250)
                      +++|++|+|++|
T Consensus       283 ~~~L~~L~Ls~N  294 (353)
T d1jl5a_         283 PPSLEELNVSNN  294 (353)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            444555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.63  E-value=0.0027  Score=52.51  Aligned_cols=51  Identities=18%  Similarity=0.237  Sum_probs=27.8

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      +++.|||+++++|.     |....++|++|+||++ +||+     |-....+|+.|++.++.
T Consensus        39 ~l~~LdLs~~~L~~-----lp~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~l~~n~   89 (353)
T d1jl5a_          39 QAHELELNNLGLSS-----LPELPPHLESLVASCN-SLTE-----LPELPQSLKSLLVDNNN   89 (353)
T ss_dssp             TCSEEECTTSCCSC-----CCSCCTTCSEEECCSS-CCSS-----CCCCCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCC-----CCCCCCCCCEEECCCC-CCcc-----cccchhhhhhhhhhhcc
Confidence            56677777664441     2234566777777654 4542     22234566666666553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0008  Score=55.85  Aligned_cols=77  Identities=18%  Similarity=0.160  Sum_probs=53.5

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|++|+|+++.|+...-..+ .++++|++|+|+++ +||.  +... ..+++|++|+++++......   .....+++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f-~~l~~L~~L~L~~N-~l~~--l~~~-~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~L  102 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRA-ELTK--LQVD-GTLPVLGTLDLSHNQLQSLP---LLGQTLPAL  102 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTS-CCCE--EECC-SCCTTCCEEECCSSCCSSCC---CCTTTCTTC
T ss_pred             cCCCEEECcCCcCCCcCHHHh-hccccccccccccc-cccc--cccc-cccccccccccccccccccc---ccccccccc
Confidence            579999999997765433333 46899999999998 5763  2222 46899999999998654431   123457788


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      +.|+.
T Consensus       103 ~~L~l  107 (266)
T d1p9ag_         103 TVLDV  107 (266)
T ss_dssp             CEEEC
T ss_pred             ccccc
Confidence            87743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.87  E-value=0.0024  Score=53.27  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=55.7

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+++++.++...... -.+++.+++|++++| ++++-... ...+|++|++|++++|..+.-.  ..+ ..+|+|
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~L~~s~n-~l~~~~~~-~~~~l~~L~~L~L~~N~L~~lp--~~l-~~l~~L  244 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFN-SISAVDNG-SLANTPHLRELHLNNNKLVKVP--GGL-ADHKYI  244 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSS-CCCEECTT-TGGGSTTCCEEECCSSCCSSCC--TTT-TTCSSC
T ss_pred             CccCEEECCCCcCCCCChhH-hhccccccccccccc-cccccccc-cccccccceeeecccccccccc--ccc-ccccCC
Confidence            67999999998555443332 357899999999998 46653332 2357999999999999654321  112 347899


Q ss_pred             ceecCCc
Q 025644           86 NDVEGDS   92 (250)
Q Consensus        86 ~~L~~~s   92 (250)
                      ++|+..+
T Consensus       245 ~~L~Ls~  251 (305)
T d1xkua_         245 QVVYLHN  251 (305)
T ss_dssp             CEEECCS
T ss_pred             CEEECCC
Confidence            9885543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.32  E-value=0.0036  Score=52.08  Aligned_cols=100  Identities=13%  Similarity=0.074  Sum_probs=63.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.+++++|+++...    ...+++|++|+++++. ++.... ..-.+++.+++|+++++...+-..  ..-..+++|
T Consensus       150 ~~L~~l~l~~n~l~~l~----~~~~~~L~~L~l~~n~-~~~~~~-~~~~~~~~l~~L~~s~n~l~~~~~--~~~~~l~~L  221 (305)
T d1xkua_         150 KKLSYIRIADTNITTIP----QGLPPSLTELHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNSISAVDN--GSLANTPHL  221 (305)
T ss_dssp             TTCCEEECCSSCCCSCC----SSCCTTCSEEECTTSC-CCEECT-GGGTTCTTCCEEECCSSCCCEECT--TTGGGSTTC
T ss_pred             cccCccccccCCccccC----cccCCccCEEECCCCc-CCCCCh-hHhhcccccccccccccccccccc--ccccccccc
Confidence            67899999999655421    1247899999999985 333322 233678999999999996544311  122468999


Q ss_pred             ceecCCchhhhhhhcc-ccccccccccccC
Q 025644           86 NDVEGDSWEELVNTDI-GHGAQSLRWFVWP  114 (250)
Q Consensus        86 ~~L~~~s~~dl~~~~i-~~g~~~L~~L~c~  114 (250)
                      ++|+..+. .+..+.- -..+++|++|+..
T Consensus       222 ~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         222 RELHLNNN-KLVKVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             CEEECCSS-CCSSCCTTTTTCSSCCEEECC
T ss_pred             eeeecccc-cccccccccccccCCCEEECC
Confidence            99865442 2221111 1346778888754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.013  Score=48.31  Aligned_cols=101  Identities=10%  Similarity=-0.010  Sum_probs=56.2

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.+++++++|+...-.. -..+++|++|+|+++. ++.-.- ..-.++++|+.|+++++..++-.-  ..-..+++|
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~-f~~~~~L~~L~l~~N~-l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~--~~f~~l~~L  203 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNR-ISSVPE-RAFRGLHSLDRLLLHQNRVAHVHP--HAFRDLGRL  203 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTC
T ss_pred             cccchhhhccccccccChhH-hccccchhhcccccCc-ccccch-hhhccccccchhhhhhccccccCh--hHhhhhhhc
Confidence            56888888888555432222 2467888888888884 542111 122478888888888885443210  012346777


Q ss_pred             ceecCCc--hhhhhhhccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFV  112 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~  112 (250)
                      +.|....  ...+....+ .++.+|++|.
T Consensus       204 ~~L~l~~N~i~~~~~~~~-~~~~~L~~L~  231 (284)
T d1ozna_         204 MTLYLFANNLSALPTEAL-APLRALQYLR  231 (284)
T ss_dssp             CEEECCSSCCSCCCHHHH-TTCTTCCEEE
T ss_pred             cccccccccccccccccc-ccccccCEEE
Confidence            7774322  222211112 3566677764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.023  Score=46.61  Aligned_cols=76  Identities=9%  Similarity=0.027  Sum_probs=51.9

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|+||...  .+ ..+++|++|||+++. ++.  +.....+.++|+.|+++++....-.  ......+++|
T Consensus        55 ~~L~~L~L~~N~l~~l~--~~-~~l~~L~~L~Ls~N~-l~~--~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~l  126 (266)
T d1p9ag_          55 TRLTQLNLDRAELTKLQ--VD-GTLPVLGTLDLSHNQ-LQS--LPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGEL  126 (266)
T ss_dssp             TTCCEEECTTSCCCEEE--CC-SCCTTCCEEECCSSC-CSS--CCCCTTTCTTCCEEECCSSCCCCCC--SSTTTTCTTC
T ss_pred             ccccccccccccccccc--cc-ccccccccccccccc-ccc--cccccccccccccccccccccceee--cccccccccc
Confidence            68999999999877432  22 368999999999984 543  2335678899999999988543311  0122345666


Q ss_pred             ceec
Q 025644           86 NDVE   89 (250)
Q Consensus        86 ~~L~   89 (250)
                      ..|.
T Consensus       127 ~~L~  130 (266)
T d1p9ag_         127 QELY  130 (266)
T ss_dssp             CEEE
T ss_pred             cccc
Confidence            6663

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.45  E-value=0.025  Score=44.23  Aligned_cols=103  Identities=8%  Similarity=-0.024  Sum_probs=61.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .++++|+|+++.||..--...-.+.++|++|+|+++. ++.-. .....+.++|++|++++..+..-..  ..-..+++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~-~~~~~~~~~L~~L~Ls~N~l~~l~~--~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQELQLGENKIKEISN--KMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSCCCCEECS--SSSTTCTTC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc-ccccc-ccccccccccceeeeccccccccCH--HHHhCCCcc
Confidence            5899999999977643222334578999999999975 33221 2234468899999999985433110  012357888


Q ss_pred             ceecCCc--hhhhhhhcccccccccccccc
Q 025644           86 NDVEGDS--WEELVNTDIGHGAQSLRWFVW  113 (250)
Q Consensus        86 ~~L~~~s--~~dl~~~~i~~g~~~L~~L~c  113 (250)
                      ++|....  +..+... .=.+..+|++|..
T Consensus       105 ~~L~L~~N~l~~i~~~-~f~~l~~L~~l~L  133 (192)
T d1w8aa_         105 KTLNLYDNQISCVMPG-SFEHLNSLTSLNL  133 (192)
T ss_dssp             CEEECCSSCCCEECTT-SSTTCTTCCEEEC
T ss_pred             cccccCCccccccCHH-HhcCCcccccccc
Confidence            8874432  2222111 1135567777653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=89.57  E-value=0.0062  Score=50.89  Aligned_cols=79  Identities=13%  Similarity=-0.004  Sum_probs=44.1

Q ss_pred             CcCEEEccCCCCCHHH-HHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            7 SWEILDISGSDVSDFG-LVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~g-L~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .++.|||++++++-.+ +-.--..+++|++|||++|.+++..=-.. ..++++|++|+++++......  ......+++|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~--~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAI--PDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEEC--CGGGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccc--cccccchhhh
Confidence            4778888887554211 11122357888888888876655310012 235788888888877543321  0122345566


Q ss_pred             cee
Q 025644           86 NDV   88 (250)
Q Consensus        86 ~~L   88 (250)
                      +.+
T Consensus       128 ~~l  130 (313)
T d1ogqa_         128 VTL  130 (313)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.052  Score=44.49  Aligned_cols=80  Identities=13%  Similarity=-0.069  Sum_probs=54.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|++|+|+...-. .-.++++|++++++++. +++-.- ....++++|++|+++++...+...  ..-..+++|
T Consensus       153 ~~L~~L~l~~N~l~~l~~~-~f~~l~~L~~l~l~~N~-l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~--~~~~~~~~L  227 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNR-VAHVHP-HAFRDLGRLMTLYLFANNLSALPT--EALAPLRAL  227 (284)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSCCSCCCH--HHHTTCTTC
T ss_pred             cchhhcccccCcccccchh-hhccccccchhhhhhcc-ccccCh-hHhhhhhhcccccccccccccccc--ccccccccc
Confidence            6799999999966532222 22489999999999984 553221 224678999999999996543211  122458899


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      ++|..
T Consensus       228 ~~L~l  232 (284)
T d1ozna_         228 QYLRL  232 (284)
T ss_dssp             CEEEC
T ss_pred             CEEEe
Confidence            98854

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.16  E-value=0.011  Score=47.09  Aligned_cols=81  Identities=11%  Similarity=-0.035  Sum_probs=46.6

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .++++|+|+++.|+--.-.. -.++++|++|+|+++...+.-. .....++++++.|.+.+|........ ..-..+++|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~-f~~l~~L~~L~ls~n~~~~~i~-~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTT-TTTCTTCCEEEEESCTTCCEEC-SSSEESCTTCCEEEEECCTTCCEECT-TSEECCTTC
T ss_pred             CCCCEEECcCCcCCccChhH-hhccchhhhhhhccccccceee-cccccccccccccccccccccccccc-ccccccccc
Confidence            57999999998665321111 2578999999999985322100 00123578888888776632211000 112356777


Q ss_pred             ceec
Q 025644           86 NDVE   89 (250)
Q Consensus        86 ~~L~   89 (250)
                      +++.
T Consensus       106 ~~l~  109 (242)
T d1xwdc1         106 QYLL  109 (242)
T ss_dssp             CEEE
T ss_pred             cccc
Confidence            7763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.04  E-value=0.042  Score=42.88  Aligned_cols=80  Identities=11%  Similarity=0.062  Sum_probs=52.3

Q ss_pred             CCcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCC
Q 025644            6 SSWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKL   85 (250)
Q Consensus         6 ~~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L   85 (250)
                      .+|+.|+|+++.|+...- ....+.++|++|+|+++ +|+.-.-. .-.+.++|++|++++..++.-..  ..-..+++|
T Consensus        54 ~~L~~L~L~~N~i~~~~~-~~~~~~~~L~~L~Ls~N-~l~~l~~~-~F~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L  128 (192)
T d1w8aa_          54 PHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGEN-KIKEISNK-MFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSL  128 (192)
T ss_dssp             TTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSC-CCCEECSS-SSTTCTTCCEEECCSSCCCEECT--TSSTTCTTC
T ss_pred             ceEeeeeccccccccccc-cccccccccceeeeccc-cccccCHH-HHhCCCcccccccCCccccccCH--HHhcCCccc
Confidence            689999999995553322 23446899999999998 45431111 22578999999999996543210  011356788


Q ss_pred             ceecC
Q 025644           86 NDVEG   90 (250)
Q Consensus        86 ~~L~~   90 (250)
                      ++|..
T Consensus       129 ~~l~L  133 (192)
T d1w8aa_         129 TSLNL  133 (192)
T ss_dssp             CEEEC
T ss_pred             ccccc
Confidence            87743

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.48  E-value=0.098  Score=40.02  Aligned_cols=62  Identities=11%  Similarity=0.083  Sum_probs=44.3

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRS   70 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~   70 (250)
                      .+|+.|+|+++ .|+......+ .+.++|+.|+|+++. |+.-.- ..-.+.++|++|++++....
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~-~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSG-LRFVAP-DAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSC-CCEECT-TGGGSCSCCCEEECCSSCCS
T ss_pred             cccCeeecCCCccccccCchhh-ccccccCcceeeccc-cCCccc-ccccccccccceeccCCCCc
Confidence            68899999887 5664333332 469999999999984 553221 12357899999999999653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.09  E-value=0.089  Score=40.28  Aligned_cols=79  Identities=14%  Similarity=0.018  Sum_probs=49.4

Q ss_pred             CcCEEEccCCCCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCCCCcHHHHHHHhhhCCCCc
Q 025644            7 SWEILDISGSDVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSPRSNHAARRCLGILKPKLN   86 (250)
Q Consensus         7 ~L~~LnLsgC~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~~~dd~al~~l~~~cp~L~   86 (250)
                      +.+.++.++.++++. +.. ..+.++|++|+|++...|+.-.-..+ .+.++|+.|+++++.+..-..  ..-..+++|+
T Consensus         9 ~~~~l~c~~~~~~~~-p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~--~~f~~l~~L~   83 (156)
T d2ifga3           9 GSSGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAP--DAFHFTPRLS   83 (156)
T ss_dssp             SSSCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECT--TGGGSCSCCC
T ss_pred             CCCeEEecCCCCccC-ccc-ccCccccCeeecCCCccccccCchhh-ccccccCcceeeccccCCccc--cccccccccc
Confidence            456677777654442 111 24678999999988766654322222 468999999999996533210  1124578999


Q ss_pred             eecC
Q 025644           87 DVEG   90 (250)
Q Consensus        87 ~L~~   90 (250)
                      +|..
T Consensus        84 ~L~L   87 (156)
T d2ifga3          84 RLNL   87 (156)
T ss_dssp             EEEC
T ss_pred             ceec
Confidence            8743

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=80.71  E-value=0.045  Score=45.34  Aligned_cols=60  Identities=18%  Similarity=0.170  Sum_probs=37.6

Q ss_pred             CCcCEEEccCC-CCCHHHHHHHHhcCCCCCeEecCCCCCcCHHHHHHHHHhCCCCCEEecCCCC
Q 025644            6 SSWEILDISGS-DVSDFGLVKVAQMCKSLKAVDISCCDRITAAGVSEFLLHCHSLETLRCGGSP   68 (250)
Q Consensus         6 ~~L~~LnLsgC-~ITD~gL~~la~~C~~L~~LdLS~C~~ITD~gl~~La~~C~~L~~L~l~gC~   68 (250)
                      .+|++|+|++| +++..=-..| .++++|++|||+++. ++... ......+++|+.|+++++.
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~-l~~~~-~~~~~~~~~L~~l~l~~N~  136 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN-VSGAI-PDFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEEC-CEEEC-CGGGGGCTTCCEEECCSSE
T ss_pred             cccccccccccccccccccccc-ccccccchhhhcccc-ccccc-cccccchhhhccccccccc
Confidence            68899999886 5543100122 358889999999884 32211 1224567778888887773