Citrus Sinensis ID: 025666

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGRPRKYGPDGTMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR
Secondary Structure (PSIPRED)
ccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHccccEEEEEccccEEEEEEEcccccccccEEEEEEEEEEEEEEccccccccccccccccEEEEEEcccccEEEcccccEEEEEccEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccHHHHHHccccEEEEEEEcccccHHHcc
Coil and Loop (DISEMBL)
meagegmstgvtvigaeapsayhvaprtenptqvsgslavttspvsvgltgtqekkkrgrprkygpdgtmalspmpisssvppsgdfpsgkrgrgrvsgheskhYKKMGMdnlgelhacsvgtnftphvitinAGEDVMMKVISFSQQGPRAICILSangvisnvtlrqpdssggtltyegRFEILSLsgsfmltesqgtrsrsggmsvslaspdgrvvGGAVAGLLVAAGPVQVINFIASFLFLIFGR
Flexible Loop (DISEMBL)
MEAGEGMSTGVTVIGAEAPSAYHVAPRTenptqvsgslavttspvsvgltgtqekkkrgrprkygpdgtMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISnvtlrqpdssggtLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR
Low Complexity Region (SEG)
MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEkkkrgrprkygpDGTMALspmpisssvppsGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRvvggavagllvaagPVQVINFIASFLFLIFGR
Disordered region (IsUnstruct)
***************************************************************************************************************NLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQ****GGTLTYEGRFEILSLSGSF************************RVVGGAVAGLLVAAGPVQVINFIASFLFLIF**
Disordered Region (DISOPRED)
************************************************************************************************************************VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLT**********GMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLI*G*
Disordered Region (DISEMBL)
********TGVTVIGAEAPSAYHVAPR***********AVTTSPVSV*****************GPDGTMALSPMPIS************************KHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFML***************SLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR
Disordered Region (DISPRO)
*************I**EAPSAYHV*********************************************************************************KKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGRPRKYGPDGTMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.586	0.469	0.339	3e-08

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 25/171 (14%)

Query: 90  GKRGRGRVSGHESKHYKKM--GMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQ 147
           GKR RGR  G ++K    +    D+   L +         HV+ ++ G D++  V ++++
Sbjct: 85  GKRPRGRPPGSKNKAKPPIIVTRDSPNALRS---------HVLEVSPGADIVESVSTYAR 135

Query: 148 QGPRAICILSANGVISNVTLRQP---------DSSGGTLTYEGRFEILSLSGSFMLTESQ 198
           +  R + +L  NG +SNVTLRQP            GG +T  GRFEILSL+G+ +   + 
Sbjct: 136 RRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAP 195

Query: 199 GTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR 249
                   +S+ LA   G+VVGG+V   L+A+ P  VI   ASF   +F R
Sbjct: 196 PGAGG---LSIFLAGGQGQVVGGSVVAPLIASAP--VILMAASFSNAVFER 241

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
224130006	324	predicted protein [Populus trichocarpa]	0.967	0.743	0.770	1e-95
255541324	324	DNA binding protein, putative [Ricinus c	0.967	0.743	0.8	3e-95
449522149	369	PREDICTED: uncharacterized LOC101212918	0.967	0.653	0.756	1e-92
359807105	346	uncharacterized protein LOC100796830 [Gl	0.959	0.690	0.755	1e-90
449432243	348	PREDICTED: uncharacterized protein LOC10	0.967	0.692	0.739	4e-90
356532097	337	PREDICTED: uncharacterized protein LOC10	0.947	0.700	0.713	9e-89
296089154	334	unnamed protein product [Vitis vinifera]	0.967	0.721	0.738	5e-88
359807562	264	uncharacterized protein LOC100793726 [Gl	0.927	0.875	0.760	2e-86
359489416	328	PREDICTED: uncharacterized protein LOC10	0.943	0.716	0.740	6e-86
356568280	338	PREDICTED: uncharacterized protein LOC10	0.943	0.695	0.729	8e-83

>gi|224130006|ref|XP_002320727.1| predicted protein [Populus trichocarpa] gi|222861500|gb|EEE99042.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/248 (77%), Positives = 207/248 (83%), Gaps = 7/248 (2%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSL-AVTTSPVSVGLTG-TQEKKKR 58
           ME  EG+S+GVTVIGAEAPS YH+APRTENP Q+  S  AV   PV  GL G T EKKKR
Sbjct: 1   MEGREGLSSGVTVIGAEAPSTYHMAPRTENPGQIVVSPPAVEVPPVGAGLIGGTAEKKKR 60

Query: 59  GRPRKYGPDGTMA--LSPMPISSSVPPSG-DFPSGKRGRGRVSGHESKHYKKMGMDNLGE 115
           GRPRKYGPDG +A  LSPMPIS+S P +G D+ +GK G+     +E K YKKMGM+NLGE
Sbjct: 61  GRPRKYGPDGAVARALSPMPISASAPHTGGDYSAGKPGKVWPGSYEKKKYKKMGMENLGE 120

Query: 116 LHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG 175
             A SVGTNFTPHVIT+NAGEDV MKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG
Sbjct: 121 WAANSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG 180

Query: 176 TLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQV 235
           TLTYEGRFEILSLSGSFM TE QGTRSRSGGMSVSLASPDGRVVGG+VAGLLVAA PVQV
Sbjct: 181 TLTYEGRFEILSLSGSFMPTEIQGTRSRSGGMSVSLASPDGRVVGGSVAGLLVAASPVQV 240

Query: 236 INFIASFL 243
           +  + SFL
Sbjct: 241 V--VGSFL 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541324|ref|XP_002511726.1| DNA binding protein, putative [Ricinus communis] gi|223548906|gb|EEF50395.1| DNA binding protein, putative [Ricinus communis]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 196/245 (80%), Positives = 211/245 (86%), Gaps = 4/245 (1%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGR 60
           ME  EG+++GVTVIGAEAPS YHVAPRTEN +Q++GS AV  S  S+GLTGT EKKKRGR
Sbjct: 1   METREGLTSGVTVIGAEAPSTYHVAPRTENSSQIAGSPAVAMSQASLGLTGTTEKKKRGR 60

Query: 61  PRKYGPDGTMA--LSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHA 118
           PRKYGPDGT+A  LSPMPISSS PP GDF SGK G+    G E K YKKMGM+N G+  +
Sbjct: 61  PRKYGPDGTVARALSPMPISSSAPPGGDFSSGKPGKVWSGGFEKKKYKKMGMENSGDWAS 120

Query: 119 CSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 178
            SVGTNFTPHVIT+NAGEDV MKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT
Sbjct: 121 GSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 180

Query: 179 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINF 238
           YEGRFEILSLSGSFM TESQGTRSRSGGMSVSLASPDGRVVGG VAGLLVAA PVQV+  
Sbjct: 181 YEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVV-- 238

Query: 239 IASFL 243
           + SFL
Sbjct: 239 VGSFL 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522149|ref|XP_004168090.1| PREDICTED: uncharacterized LOC101212918 [Cucumis sativus]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 189/250 (75%), Positives = 212/250 (84%), Gaps = 9/250 (3%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVS---GSLAVTTSPVSVGL--TGTQEK 55
           ME  E ++ GVTVIGAEAPSAYHVAPRT+NP   +   GS  V  SPVSVGL  +GT  K
Sbjct: 25  MEEREAINAGVTVIGAEAPSAYHVAPRTDNPPPPASGGGSPTVAASPVSVGLPGSGTTGK 84

Query: 56  KKRGRPRKYGPDGT--MALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNL 113
           KKRGRPRKYGPDGT  MALSP+P+SSS P +G F   KRG+GR+ G E KH+KKMGM+ +
Sbjct: 85  KKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYI 144

Query: 114 GELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSS 173
           GE +AC+VGTNF PH+IT+NAGEDV MK+ISFSQQGPRAICILSANGVISNVTLRQPDSS
Sbjct: 145 GEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSS 204

Query: 174 GGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPV 233
           GGTLTYEGRFEILSLSGSFM TE+QGTRSR+GGMSVSLASPDGRVVGG VAGLL+AAGPV
Sbjct: 205 GGTLTYEGRFEILSLSGSFMPTENQGTRSRTGGMSVSLASPDGRVVGGGVAGLLIAAGPV 264

Query: 234 QVINFIASFL 243
           QV+  + SFL
Sbjct: 265 QVV--VGSFL 272

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807105|ref|NP_001241091.1| uncharacterized protein LOC100796830 [Glycine max] gi|255644758|gb|ACU22881.1| unknown [Glycine max]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/254 (75%), Positives = 211/254 (83%), Gaps = 15/254 (5%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQV---------SGSLAVTTSPVSVGLTG 51
           MEA EG+S+GVTVIGAEAPSAYHVAPR+E P QV         + +  V  SPVS GL G
Sbjct: 1   MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGAAATAAPVGVSPVSAGLDG 60

Query: 52  TQEKKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMG 109
           T  KKKRGRPRKYGPDG  TMALSPMPISSS PPS DF SGKRG+ R  G + K  KK+G
Sbjct: 61  TAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMR--GMDYKPSKKVG 118

Query: 110 MDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQ 169
           +D LG+L+ACS GTNF PH+IT+NAGED+ MKVISFSQQGPRAICILSANGVISNVTLRQ
Sbjct: 119 LDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQ 178

Query: 170 PDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVA 229
           PDSSGGTLTYEGRFEILSLSGSFM T++QGTRSR+GGMSVSLASPDGRVVGG VAGLLVA
Sbjct: 179 PDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVA 238

Query: 230 AGPVQVINFIASFL 243
           A PVQV+  + SFL
Sbjct: 239 ASPVQVV--VGSFL 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432243|ref|XP_004133909.1| PREDICTED: uncharacterized protein LOC101212918 [Cucumis sativus]

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/253 (73%), Positives = 209/253 (82%), Gaps = 12/253 (4%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSL------AVTTSPVSVGL--TGT 52
           ME  E ++ GVTVIGAEAPSAYHVAPRT+NP              V  SPVSVGL  +GT
Sbjct: 1   MEEREAINAGVTVIGAEAPSAYHVAPRTDNPPPPPPPASGGGSPTVAASPVSVGLPGSGT 60

Query: 53  QEKKKRGRPRKYGPDGT--MALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGM 110
             KKKRGRPRKYGPDGT  MALSP+P+SSS P +G F   KRG+GR+ G E KH+KKMGM
Sbjct: 61  TGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGM 120

Query: 111 DNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQP 170
           + +GE +AC+VGTNF PH+IT+NAGEDV MK+ISFSQQGPRAICILSANGVISNVTLRQP
Sbjct: 121 EYIGEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQP 180

Query: 171 DSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAA 230
           DSSGGTLTYEGRFEILSLSGSFM TE+QGTRSR+GGMSVSLASPDGRVVGG VAGLL+AA
Sbjct: 181 DSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRTGGMSVSLASPDGRVVGGGVAGLLIAA 240

Query: 231 GPVQVINFIASFL 243
           GPVQV+  + SFL
Sbjct: 241 GPVQVV--VGSFL 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532097|ref|XP_003534610.1| PREDICTED: uncharacterized protein LOC100791563 [Glycine max]

 Score =  332 bits (851), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 179/251 (71%), Positives = 205/251 (81%), Gaps = 15/251 (5%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSL------AVTTSPVSVGLTGTQE 54
           ME  EG+S+GVTVIGAEAPSAYH+APR+E P+QV   +      A+  SP SVGL GT  
Sbjct: 1   MEGREGISSGVTVIGAEAPSAYHMAPRSEAPSQVPPPVPEATAGAIGVSPASVGLDGTAA 60

Query: 55  KKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDN 112
           KKKRGRPRKYGPDG  +MALSP+PISSS P + +F SGK+ RG+    E K  KK+G+D 
Sbjct: 61  KKKRGRPRKYGPDGLNSMALSPIPISSSAPFANEFSSGKQ-RGKPRAMEYKLPKKVGVDL 119

Query: 113 LGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS 172
            G+    SVGTNF PH+IT+N GED+ MKVISFSQQGPRAICILSA+GVISNVTLRQPDS
Sbjct: 120 FGD----SVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDS 175

Query: 173 SGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGP 232
           SGGTLTYEGRFEILSLSGSFM T++QGTRSRSGGMSVSL+SPDGR+VGG VAGLLVAAGP
Sbjct: 176 SGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRIVGGGVAGLLVAAGP 235

Query: 233 VQVINFIASFL 243
           VQV+  + SFL
Sbjct: 236 VQVV--VGSFL 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089154|emb|CBI38857.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 181/245 (73%), Positives = 203/245 (82%), Gaps = 4/245 (1%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGR 60
           ME  EGM++GVTVIGAEAPS Y +  RTENP+Q++GS AV  SPVSVG TGT  KKKRGR
Sbjct: 1   MEGREGMTSGVTVIGAEAPSDYEMVARTENPSQIAGSPAVDASPVSVGFTGTVGKKKRGR 60

Query: 61  PRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHA 118
           PRKY PDG  +M LSPMPISSS P SG+F SGKRGRGR  G ESK  +K+G +N G   A
Sbjct: 61  PRKYQPDGMASMTLSPMPISSSAPLSGNFSSGKRGRGRPVGSESKQKQKVGSENSGNWSA 120

Query: 119 CSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLT 178
            S G NFTPH+IT+NAGEDV MK+ISFSQQGPRA+CILSANGVISNVTLRQ DSSGGTLT
Sbjct: 121 ISDGVNFTPHIITVNAGEDVTMKLISFSQQGPRAVCILSANGVISNVTLRQQDSSGGTLT 180

Query: 179 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINF 238
           YEGRFEILSL+GSF+ TES GTR+R+GGMSVSLASPDGRVVGG VAGLL+AA PV V+  
Sbjct: 181 YEGRFEILSLTGSFVPTESGGTRNRAGGMSVSLASPDGRVVGGGVAGLLIAASPVLVV-- 238

Query: 239 IASFL 243
           + SFL
Sbjct: 239 VGSFL 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807562|ref|NP_001240898.1| uncharacterized protein LOC100793726 [Glycine max] gi|255644376|gb|ACU22693.1| unknown [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 187/246 (76%), Positives = 205/246 (83%), Gaps = 15/246 (6%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQV----------SGSLAVTTSPVSVGLT 50
           MEA EG+S+GVTVIGAEAPSAYHVAPR+E P QV          + +  V  SPVSVGL 
Sbjct: 1   MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGAAATAAPVGVSPVSVGLD 60

Query: 51  GTQEKKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKM 108
           GT  KKKRGRPRKYGPDG  TMALSPMPISSS PPS DF SGKRG+ R  G + K  KK+
Sbjct: 61  GTV-KKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMR--GMDYKPSKKV 117

Query: 109 GMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLR 168
           G+D +G+L+ CS GTNF PH+IT+NAGED+ MKVISFSQQGPRAICILSANGVISNVTLR
Sbjct: 118 GLDYIGDLNVCSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLR 177

Query: 169 QPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLV 228
           QPDSSGGTLTYEGRFEILSLSGSFM T++QGTRSR+GGMSVSLASPDGRVVGG VAGLLV
Sbjct: 178 QPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLV 237

Query: 229 AAGPVQ 234
           AA PVQ
Sbjct: 238 AASPVQ 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489416|ref|XP_002273440.2| PREDICTED: uncharacterized protein LOC100262627 [Vitis vinifera]

 Score =  323 bits (827), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 177/239 (74%), Positives = 199/239 (83%), Gaps = 4/239 (1%)

Query: 7   MSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEKKKRGRPRKYGP 66
           M++GVTVIGAEAPS Y +  RTENP+Q++GS AV  SPVSVG TGT  KKKRGRPRKY P
Sbjct: 1   MTSGVTVIGAEAPSDYEMVARTENPSQIAGSPAVDASPVSVGFTGTVGKKKRGRPRKYQP 60

Query: 67  DG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTN 124
           DG  +M LSPMPISSS P SG+F SGKRGRGR  G ESK  +K+G +N G   A S G N
Sbjct: 61  DGMASMTLSPMPISSSAPLSGNFSSGKRGRGRPVGSESKQKQKVGSENSGNWSAISDGVN 120

Query: 125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFE 184
           FTPH+IT+NAGEDV MK+ISFSQQGPRA+CILSANGVISNVTLRQ DSSGGTLTYEGRFE
Sbjct: 121 FTPHIITVNAGEDVTMKLISFSQQGPRAVCILSANGVISNVTLRQQDSSGGTLTYEGRFE 180

Query: 185 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFL 243
           ILSL+GSF+ TES GTR+R+GGMSVSLASPDGRVVGG VAGLL+AA PV V+  + SFL
Sbjct: 181 ILSLTGSFVPTESGGTRNRAGGMSVSLASPDGRVVGGGVAGLLIAASPVLVV--VGSFL 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568280|ref|XP_003552341.1| PREDICTED: uncharacterized protein LOC100777213 [Glycine max]

 Score =  312 bits (800), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 183/251 (72%), Positives = 206/251 (82%), Gaps = 16/251 (6%)

Query: 1   MEAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSL------AVTTSPVSVGLTGTQE 54
           ME  EG S+GVTVIGAEAPSAYH+APR+E P+QV   +      A+  SPVSVGL GT  
Sbjct: 3   MEGREGFSSGVTVIGAEAPSAYHMAPRSEAPSQVPPPVPEATAGAIGVSPVSVGLDGTAA 62

Query: 55  KKKRGRPRKYGPDG--TMALSPMPISSSVPPSGDFPSGKRGRGRVSGHESKHYKKMGMDN 112
           KKKRGRPRKYGPDG  +MALSPMPISSS P + +F SGKRG+ R  G E K  KK+G+D 
Sbjct: 63  KKKRGRPRKYGPDGLNSMALSPMPISSSAPFANNFSSGKRGKSR--GMEYKLLKKVGVDL 120

Query: 113 LGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS 172
            G+    SVGTNF PH+IT+N GED+ MKVISFSQQGPRAICILSA+GVISNVTLRQPDS
Sbjct: 121 FGD----SVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDS 176

Query: 173 SGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGP 232
           SGGTLTYEGRFEILSLSGSFM T++QG+RSRSGGMSVSL+SPDGRVVGG VAGLLVAAGP
Sbjct: 177 SGGTLTYEGRFEILSLSGSFMPTDNQGSRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGP 236

Query: 233 VQVINFIASFL 243
           VQV+  + SFL
Sbjct: 237 VQVV--VGSFL 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.606	0.474	0.618	2.6e-51
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.947	0.662	0.478	4.7e-48
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.614	0.458	0.579	4.7e-48
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.690	0.425	0.542	1.4e-42
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.481	0.286	0.663	2.6e-42
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.590	0.418	0.534	3.2e-39
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.506	0.311	0.601	3.1e-35
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.682	0.488	0.466	8.3e-35
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.610	0.429	0.481	3.7e-32
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.489	0.322	0.523	1.8e-30

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
 Identities = 99/160 (61%), Positives = 117/160 (73%)

Query:    91 KRGRGRVSGHESKH-YKKMGMDNLGELHACS------VGTNFTPHVITINAGEDVMMKVI 143
             KR RG+++G + K  +K +G  + GE           VG+NFTPHVIT+N GED+ M++I
Sbjct:    82 KRVRGKLNGFDMKKMHKTIGFHSSGERFGVGGGVGGGVGSNFTPHVITVNTGEDITMRII 141

Query:   144 SFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSR 203
             SFSQQGPRAICILSANGVISNVTLRQPDS GGTLTYEGRFEILSLSGSFM TE+QG++ R
Sbjct:   142 SFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYEGRFEILSLSGSFMETENQGSKGR 201

Query:   204 SGGMSVSLASPDGRXXXXXXXXXXXXXXPVQVI--NFIAS 241
             SGGMSVSLA PDGR              P+QV+  +FI S
Sbjct:   202 SGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVGSFITS 241

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 121/253 (47%), Positives = 144/253 (56%)

Query:     2 EAGEGMSTGVTVIGAEAPSAYHVAPRTENPTQVSGSLAVTTSPVSVGLTGTQEXXXXXXX 61
             E+     T VT    + PS++H AP    P Q+S     TT+    G++G          
Sbjct:    40 ESSNQSPTSVTPPPPQ-PSSHHTAPP---PLQISTVTTTTTTAAMEGISGGLMKKKRGRP 95

Query:    62 XXXXXDGTMALXXXXXXXXXXXXGDFP---------SGKRGRGRVSGHESKHYKKMG--M 110
                  DGT+                 P         S    R +V    S +  K    +
Sbjct:    96 RKYGPDGTVVALSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSFNRTKYHHQV 155

Query:   111 DNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQP 170
             +NLGE   CSVG NFTPH+IT+N GEDV MK+ISFSQQGPR+IC+LSANGVIS+VTLRQP
Sbjct:   156 ENLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQP 215

Query:   171 DSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRXXXXXXXXXXXXX 230
             DSSGGTLTYEGRFEILSLSGSFM  +S GTRSR+GGMSVSLASPDGR             
Sbjct:   216 DSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAA 275

Query:   231 XPVQVINFIASFL 243
              PVQV+  + SFL
Sbjct:   276 SPVQVV--VGSFL 286

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
 Identities = 91/157 (57%), Positives = 112/157 (71%)

Query:    89 SGKRGRGRVSGHESKHY--KKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFS 146
             S KRG+ + +      +   K  ++NLGE    S   NFTPH+IT+NAGEDV  ++ISFS
Sbjct:   112 SEKRGKMKPATPTPSSFIRPKYQVENLGEWSPSSAAANFTPHIITVNAGEDVTKRIISFS 171

Query:   147 QQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGG 206
             QQG  AIC+L ANGV+S+VTLRQPDSSGGTLTYEGRFEILSLSG+FM ++S GTRSR+GG
Sbjct:   172 QQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYEGRFEILSLSGTFMPSDSDGTRSRTGG 231

Query:   207 MSVSLASPDGRXXXXXXXXXXXXXXPVQVINFIASFL 243
             MSVSLASPDGR              P+QV+  + +FL
Sbjct:   232 MSVSLASPDGRVVGGGVAGLLVAATPIQVV--VGTFL 266

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 102/188 (54%), Positives = 117/188 (62%)

Query:    67 DGTMA--LXXXXXXXXXXXXGDFPSGKRGRGRVSGHESKHYKKMGM---D------NLGE 115
             DGT+   L             +FP  KRGRGR  G  ++  KK  M   D      NL  
Sbjct:    98 DGTLVVTLSPMPISSSVPLTSEFPPRKRGRGR--GKSNRWLKKSQMFQFDRSPVDTNLAG 155

Query:   116 LHACS-VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG 174
             +     VG NFTPHV+ +NAGEDV MK+++FSQQG RAICILSANG ISNVTLRQ  +SG
Sbjct:   156 VGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSG 215

Query:   175 GTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRXXXXXXXXXXXXXXPVQ 234
             GTLTYEGRFEILSL+GSFM  +S GTRSR+GGMSV LA PDGR              PVQ
Sbjct:   216 GTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPDGRVFGGGLAGLFLAAGPVQ 275

Query:   235 VI--NFIA 240
             V+   FIA
Sbjct:   276 VMVGTFIA 283

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
 Identities = 81/122 (66%), Positives = 94/122 (77%)

Query:   121 VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 180
             V  +FTPHV+T+NAGEDV MK+++FSQQG RAICILSANG ISNVTLRQ  +SGGTLTYE
Sbjct:   174 VSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 233

Query:   181 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRXXXXXXXXXXXXXXPVQVI--NF 238
             G FEILSL+GSF+ +ES GTRSR+GGMSVSLA  DGR              PVQV+  +F
Sbjct:   234 GHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQVMVGSF 293

Query:   239 IA 240
             IA
Sbjct:   294 IA 295

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
 Identities = 85/159 (53%), Positives = 105/159 (66%)

Query:    85 GDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVIS 144
             GD   G++ RGR  G  SK  K   +  LG     S G  FTPHV+T+ AGEDV  K+++
Sbjct:   133 GD--GGEKKRGRPPGSSSKRLK---LQALG-----STGIGFTPHVLTVLAGEDVSSKIMA 182

Query:   145 FSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRS 204
              +  GPRA+C+LSANG ISNVTLRQ  +SGGT+TYEGRFEILSLSGSF L E+ G RSR+
Sbjct:   183 LTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRSRT 242

Query:   205 GGMSVSLASPDGRXXXXXXXXXXXXXXPVQVINFIASFL 243
             GG+SVSL+SPDG               PVQ++  + SFL
Sbjct:   243 GGLSVSLSSPDGNVLGGSVAGLLIAASPVQIV--VGSFL 279

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 77/128 (60%), Positives = 92/128 (71%)

Query:   118 ACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTL 177
             +C VG NFT H  T+N GEDV MKV+ +SQQG RAICILSA G ISNVTL QP ++GGTL
Sbjct:   153 SCYVGANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTL 212

Query:   178 TYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRXXXXXXXXXXXXXXPVQVIN 237
             TYEGRFEILSLSGSFM TE+ GT+ R+GGMS+SLA P+G               PVQV+ 
Sbjct:   213 TYEGRFEILSLSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVV- 271

Query:   238 FIASFLFL 245
              + SF+ +
Sbjct:   272 -MGSFIVM 278

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 83/178 (46%), Positives = 109/178 (61%)

Query:    67 DGTMALXXXXXXXXXXXXGDFPSGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFT 126
             DG+++L             +  S KRGRGR  G      KK  M ++GEL   S G +FT
Sbjct:   110 DGSVSLALSSSSVSTITPNN--SNKRGRGRPPGSG----KKQRMASVGELMPSSSGMSFT 163

Query:   127 PHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEIL 186
             PHVI ++ GED+  KVI+FSQQGPRAIC+LSA+G +S  TL QP +S G + YEGRFEIL
Sbjct:   164 PHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYEGRFEIL 223

Query:   187 SLSGSFMLTESQGTRSRSGGMSVSLASPDGRXXXXXXXXXXXXXXPVQVINFIASFLF 244
             +LS S+++      R+R+G +SVSLASPDGR              PVQVI  + SF++
Sbjct:   224 ALSTSYIVATDGSFRNRTGNLSVSLASPDGRVIGGAIGGPLIAASPVQVI--VGSFIW 279

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 76/158 (48%), Positives = 99/158 (62%)

Query:    89 SGKRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQ 148
             S KRGRGR  G      KK  + ++GE+   S G +FTPHVI ++ GED+  KVISFS Q
Sbjct:   132 SNKRGRGRPPGSG----KKQRLSSIGEMMPSSTGMSFTPHVIVVSIGEDIASKVISFSHQ 187

Query:   149 GPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMS 208
             GPRAIC+LSA+G +S  TL QP  S GT+ YEG FE++SLS S++ T      +R+G ++
Sbjct:   188 GPRAICVLSASGAVSTATLLQPAPSHGTIIYEGLFELISLSTSYLNTTDNDYPNRTGSLA 247

Query:   209 VSLASPDGRXXXXXXXXXXXXXXPVQVINFIASFLFLI 246
             VSLASPDGR               VQVI  + SF++ I
Sbjct:   248 VSLASPDGRVIGGGIGGPLIAASQVQVI--VGSFIWAI 283

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 66/126 (52%), Positives = 92/126 (73%)

Query:    91 KRGRGRVSGHESKHYKKMGMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGP 150
             KR RGR  G      +K  + NLGE    S G  F PHVI++ +GED++ KV+SFSQ+ P
Sbjct:   147 KRARGRPPGTG----RKQRLANLGEWMNTSAGLAFAPHVISVGSGEDIVSKVLSFSQKRP 202

Query:   151 RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVS 210
             RA+CI+S  G +S+VTLR+P S+  +LT+EGRFEILSL GS+++ E  G++SR+GG+SVS
Sbjct:   203 RALCIMSGTGTVSSVTLREPASTTPSLTFEGRFEILSLGGSYLVNEEGGSKSRTGGLSVS 262

Query:   211 LASPDG 216
             L+ P+G
Sbjct:   263 LSGPEG 268

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	3e-35
cd11378	113	cd11378, DUF296, Domain of unknown function found	5e-31
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	1e-04

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  121 bits (307), Expect = 3e-35
 Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 9/116 (7%)

Query: 125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPD---SSGGTLTYEG 181
             PHV+ +  GED++  + +F++Q      +LS  G +SNVTLRQPD    S G +T EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 182 RFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVA-GLLVAAGPVQVI 236
           RFEILSLSG+            SG + VSLA PDG+VVGG +A G + A G V V 
Sbjct: 61  RFEILSLSGTISP-----GGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVT 111

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  110 bits (277), Expect = 5e-31
 Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 10/120 (8%)

Query: 126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS---SGGTLTYEGR 182
            P V+ +  GED++  + +F+++      +LS  G +SN TLR PD       T+T+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 183 FEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASF 242
            EILSLSG+    + +     SG + VSLA  DGRV+GG + G LV AG V+V   I   
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGALV-AGTVEV--VIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 135 GEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFEILSLSGS 191
           GED+  ++ +F++Q      +++A G + +  LR     +    T+      E+LSL G+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 192 FMLTESQGTRSRSGGMSVSLASPDGRVVGG 221
             L +          +  +L   +G  +GG
Sbjct: 79  IALDDP------FVHLHAALGDENGITLGG 102

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.92
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.56
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.48
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	85.73

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=1.2e-29  Score=204.86  Aligned_cols=115  Identities=32%  Similarity=0.454  Sum_probs=101.4

Q ss_pred             ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCC--CCCeeeeecceeEEEeeeeeeccCCCCCcC
Q 025666          125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS--SGGTLTYEGRFEILSLSGSFMLTESQGTRS  202 (249)
Q Consensus       125 ~~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~--~~~~~t~eG~fEILSLsGsis~~~~~~~~~  202 (249)
                      ||+|++||++||||+++|++||++..+..|++|++|+|++|+|++++.  .....+++|+|||+||+|||...++    +
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence            689999999999999999999998888889999999999999999954  3368899999999999999998555    3


Q ss_pred             CCCceEEEEeCCCCcEEeeeeC-ceeEEeecEEEEEeeeeeccc
Q 025666          203 RSGGMSVSLASPDGRVVGGAVA-GLLVAAGPVQVINFIASFLFL  245 (249)
Q Consensus       203 ~~~hLhVSLa~~dG~ViGGhL~-G~LIAAt~V~Vvv~~gsF~~~  245 (249)
                      ++.|+|++|++.||+++||||. |.+.++.+|+|++  .++++.
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~--~~~~~~  118 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTVFATAEVVITE--LSGINF  118 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEE--ETTEEE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEEeEEEEEEEEE--ecCccc
Confidence            8999999999999999999999 8888888888888  666554

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.92  E-value=2.8e-24  Score=180.01  Aligned_cols=119  Identities=21%  Similarity=0.308  Sum_probs=103.4

Q ss_pred             CCCceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCC
Q 025666          122 GTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQ  198 (249)
Q Consensus       122 g~~~~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~  198 (249)
                      ...-+.+++||++|||+.+.|.+||+++.+.+++++|+|++++++|++++.++   .+++++|+||||||.|||..++  
T Consensus         6 ~~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--   83 (141)
T COG1661           6 SSSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--   83 (141)
T ss_pred             cccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC--
Confidence            35568899999999999999999999999989999999999999999999664   5889999999999999999987  


Q ss_pred             CCcCCCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666          199 GTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR  249 (249)
Q Consensus       199 ~~~~~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R  249 (249)
                          |+.|||++|++++|+++||||.+..+.. +++|++  .-.....|.|
T Consensus        84 ----p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I--~el~~~~~~R  127 (141)
T COG1661          84 ----PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFI--RELPGELFRR  127 (141)
T ss_pred             ----CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEE--EEccccceeE
Confidence                7999999999999999999999777775 566666  4444444443

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.56  E-value=0.00078  Score=35.71  Aligned_cols=12  Identities=67%  Similarity=1.085  Sum_probs=4.4

Q ss_pred             ccccCCCCCCCC
Q 025666           55 KKKRGRPRKYGP   66 (249)
Q Consensus        55 kkkrGRPrky~~   66 (249)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            589999999864

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.48  E-value=0.0013  Score=40.86  Aligned_cols=15  Identities=60%  Similarity=0.811  Sum_probs=13.0

Q ss_pred             ccccCCCCCCCCCCC
Q 025666           55 KKKRGRPRKYGPDGT   69 (249)
Q Consensus        55 kkkrGRPrky~~dg~   69 (249)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999988764

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=85.73  E-value=0.29  Score=43.61  Aligned_cols=22  Identities=45%  Similarity=0.762  Sum_probs=14.6

Q ss_pred             cccccccCCCCCC-CCCCCCccC
Q 025666           52 TQEKKKRGRPRKY-GPDGTMALS   73 (249)
Q Consensus        52 ~~~kkkrGRPrky-~~dg~~~l~   73 (249)
                      ..+|||||||||- +-.|.....
T Consensus        65 sdAKRKRGRPRKKsggsgErnst   87 (219)
T PF14621_consen   65 SDAKRKRGRPRKKSGGSGERNST   87 (219)
T ss_pred             chhhhhcCCCccCCCCCccccCC
Confidence            3689999999964 444433333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	4e-25
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	3e-24
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	9e-17
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	6e-08
3htn_A	149	Putative DNA binding protein; DUF269 family protei	3e-07
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	2e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 95.9 bits (238), Expect = 4e-25
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 118 ACSVGTNFTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQPDSSGGT 176
           +    +    + + +  G++V  ++ +F QQ   RA  I    G +++V LR       T
Sbjct: 11  SHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEAT 69

Query: 177 LTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVI 236
            +  G FE++SL+G+  LT           + ++++ P G ++GG +         ++++
Sbjct: 70  TSLTGTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELV 121

Query: 237 NFIASFLFLIFGR 249
             I     L F R
Sbjct: 122 --IGELPALTFSR 132

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 93.5 bits (232), Expect = 3e-24
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 127 PHVITINAGEDVMMKVISF-SQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEI 185
              + +  G D+  +++    Q    A  I S  G +S + +R  D S  TL     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLAD-SVSTLQVSAPFEI 62

Query: 186 LSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFL 245
           LSLSG+               + +++A   GRV GG +    +     +++  I  +   
Sbjct: 63  LSLSGTLTYQHC--------HLHIAVADAQGRVWGGHLLEGNLINTTAELM--IHHYPQH 112

Query: 246 IFGR 249
            F R
Sbjct: 113 HFTR 116

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 73.8 bits (181), Expect = 9e-17
 Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 120 SVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---T 176
            + +    ++  +  GE+++  + +F ++      I++  G + N  +            
Sbjct: 4   GMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKV 63

Query: 177 LTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVI 236
           +  +G +E++SL G+  L + +          VSL + +G V GG +    V    + + 
Sbjct: 64  IPLKGSYELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ 119

Query: 237 NF 238
             
Sbjct: 120 EL 121

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 49.6 bits (118), Expect = 6e-08
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 128 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---TLTYEGRFE 184
            ++ ++ G+D++ ++  F ++       +SA G + +  +   D               E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 185 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFI 239
           ILSLSG+  + +S         + V L   DG V GG +    V A  V V+   
Sbjct: 72  ILSLSGNVSMKDS----KPFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLPLS 121

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 128 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFE 184
           ++++IN   +++  + +F ++       ++  G I  +TLR       +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 185 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAA 230
           I +L+G+      Q        + +++   D   + G +   +   
Sbjct: 78  ISNLTGNISSMNEQ----VYLHLHITVGRSDYSALAGHLLSAIQNG 119

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGT--LTYEGRF 183
           T +++ +  G++V+  +   ++            G +S  T    D              
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 184 EILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVI 236
           E+ +++GS    E +     S     ++     +  GG + GL V  G  ++ 
Sbjct: 73  EMANMTGSIAWKEGK----PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEIT 121

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)

Query: 53 QE-KKKRGRPRKYGPDGTMALSPMPISSSV 81
          Q  KK +   + Y  D   AL+   I +++
Sbjct: 20 QALKKLQASLKLYADDSAPALA---IKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.95
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.95
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.95
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.94
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.94
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.91
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.54

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.95  E-value=4.2e-28  Score=199.81  Aligned_cols=117  Identities=18%  Similarity=0.246  Sum_probs=101.7

Q ss_pred             ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCCCCc
Q 025666          125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTR  201 (249)
Q Consensus       125 ~~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~~~~  201 (249)
                      -++|++||++||||+++|++||+++.+..|+++++|++++|+|+|++.+.   ..++++|+|||+||+|||++.++.   
T Consensus         9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~---   85 (143)
T 2dt4_A            9 GRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE---   85 (143)
T ss_dssp             EEEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE---
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC---
Confidence            37999999999999999999998766666666999999999999998764   368899999999999999997653   


Q ss_pred             CCCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666          202 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR  249 (249)
Q Consensus       202 ~~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R  249 (249)
                       ++.|+|++|+|.||+++||||...+++  +.+|++  ..|.+..|+|
T Consensus        86 -p~~HlHi~l~~~~G~v~GGHl~~g~v~--t~Ev~i--~~~~~~~~~R  128 (143)
T 2dt4_A           86 -PFVHAHVSLGNEEGIVFGGHLVEGEVF--VAEIFL--QELKGEKIER  128 (143)
T ss_dssp             -EEEEEEEEEECTTSCEEEEEEEEEEEE--EEEEEE--EEEEESCCEE
T ss_pred             -ceeeEEEEEECCCCCEeCCCCCCCceE--EEEEEE--EEcCCCeEEE
Confidence             899999999999999999999966555  555677  7888888876

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.95  E-value=6.9e-27  Score=192.95  Aligned_cols=114  Identities=27%  Similarity=0.392  Sum_probs=101.0

Q ss_pred             CceeEEEEEcCCCcHHHHHHHHHHh-CCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeeccCCCCCcC
Q 025666          124 NFTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRS  202 (249)
Q Consensus       124 ~~~phVIrv~~GEDIve~I~~faq~-~~~aicILSaiGaVsnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~~~~~~~~  202 (249)
                      .|++|++||++||||+++|++||++ +.+++||++++|++++++|++++.+. +++++|+|||+||+|||++.       
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-------   72 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-------   72 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-------
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-------
Confidence            3789999999999999999999965 55689999999999999999999864 78899999999999999984       


Q ss_pred             CCCceEEEEeCCCCcEEeeeeCc-eeEEeecEEEEEeeeeeccccccC
Q 025666          203 RSGGMSVSLASPDGRVVGGAVAG-LLVAAGPVQVINFIASFLFLIFGR  249 (249)
Q Consensus       203 ~~~hLhVSLa~~dG~ViGGhL~G-~LIAAt~V~Vvv~~gsF~~~~F~R  249 (249)
                       ..|||++|+|.||+++||||.+ ..| ..+++|++  ..|....|+|
T Consensus        73 -~~HlHisl~~~~G~v~GGHl~~g~~V-~~t~Ev~i--~~~~~~~~~R  116 (142)
T 2p6y_A           73 -HCHLHIAVADAQGRVWGGHLLEGNLI-NTTAELMI--HHYPQHHFTR  116 (142)
T ss_dssp             -CEEEEEEEECTTSCEEEEEECTTCEE-CC-EEEEE--EECTTEEEEE
T ss_pred             -CCEEEEEEECCCCCEEccccCCCCeE-EEEEEEEE--EEccCCeEEE
Confidence             2799999999999999999995 566 56788888  8888888876

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.95  E-value=8.2e-27  Score=194.98  Aligned_cols=118  Identities=24%  Similarity=0.420  Sum_probs=104.5

Q ss_pred             cCCCCceeEEEEEcCCCcHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeeccCCC
Q 025666          120 SVGTNFTPHVITINAGEDVMMKVISFSQ-QGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQ  198 (249)
Q Consensus       120 ~~g~~~~phVIrv~~GEDIve~I~~faq-~~~~aicILSaiGaVsnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~~~~  198 (249)
                      +....+++|++||++||||+++|++||+ ++.+++||++++|++++++|+|++++. +++|+|+|||+||+|||++.   
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence            4567899999999999999999999995 676789999999999999999999874 78899999999999999985   


Q ss_pred             CCcCCCCceEEEEeCCCCcEEeeeeCc-eeEEeecEEEEEeeeeeccccccC
Q 025666          199 GTRSRSGGMSVSLASPDGRVVGGAVAG-LLVAAGPVQVINFIASFLFLIFGR  249 (249)
Q Consensus       199 ~~~~~~~hLhVSLa~~dG~ViGGhL~G-~LIAAt~V~Vvv~~gsF~~~~F~R  249 (249)
                           ..|||++|+|.||+++||||.+ ..|. .+++|++  ..|....|+|
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~-~t~Ev~i--~~~~~~~~~R  132 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVR-TTLELVI--GELPALTFSR  132 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEE-EEEEEEE--EECTTEEEEE
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEE-EEEEEEE--EEccCceEEE
Confidence                 2799999999999999999995 5555 6778888  7888777876

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.94  E-value=1.6e-27  Score=196.92  Aligned_cols=116  Identities=22%  Similarity=0.222  Sum_probs=102.7

Q ss_pred             ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCCCCc
Q 025666          125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTR  201 (249)
Q Consensus       125 ~~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~~~~  201 (249)
                      -++|++||++||||+++|++||++..+..|+++++|++++++|++++.+.   ..++++|+|||+||+|||++.++.   
T Consensus         9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~---   85 (146)
T 2h6l_A            9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK---   85 (146)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE---
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC---
Confidence            46999999999999999999997655555555999999999999998875   378899999999999999997653   


Q ss_pred             CCCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666          202 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR  249 (249)
Q Consensus       202 ~~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R  249 (249)
                       ++.|||++|+ .||+++||||.+.+|  .+++|++  .+|.+..|+|
T Consensus        86 -p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi--~~~~~~~~~R  127 (146)
T 2h6l_A           86 -PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFV--LPLSGEAPER  127 (146)
T ss_dssp             -EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEE--EECBSCCCBE
T ss_pred             -ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEE--EEcCCCcEEE
Confidence             8999999999 999999999997776  5888888  8999988886

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.94  E-value=1.2e-26  Score=192.98  Aligned_cols=116  Identities=15%  Similarity=0.238  Sum_probs=97.9

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCCCCcC
Q 025666          126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  202 (249)
Q Consensus       126 ~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~~~~~  202 (249)
                      +.|++||++||||+++|++||+++.+..|+++++|++++|+|++++.+.   ..++++|+|||+||+|||++.|+    +
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence            7999999999999999999998877777777999999999999998764   36899999999999999999865    3


Q ss_pred             CCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666          203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR  249 (249)
Q Consensus       203 ~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R  249 (249)
                      ++.|||++|+|.||+++||||....|. .+.+|++  ..+.. .|.|
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g~V~-~t~Ei~i--~~~~~-~~~R  134 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSAIQN-GAGEFVV--EDYSE-RISR  134 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEEEEE-EEEEEEE--EECCS-CCEE
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCCEEE-EEEEEEE--EEcCC-eeEE
Confidence            899999999999999999999966554 3445555  34444 4544

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.91  E-value=2.5e-24  Score=178.51  Aligned_cols=116  Identities=18%  Similarity=0.262  Sum_probs=99.8

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCCCCcC
Q 025666          126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  202 (249)
Q Consensus       126 ~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~~~~~  202 (249)
                      +.+++||++||||+++|.+||++..+..++++++|++++++|++++.+.   ...+++ ++||+||+|||++.|+    +
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence            5699999999999999999999888888888999999999999998764   246688 8999999999998775    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666          203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR  249 (249)
Q Consensus       203 ~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R  249 (249)
                      |+.|||++|+|.||+++||||....|.+.+++|++  ..+. ..|.|
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i--~~~~-~~~~R  131 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITV--TVYP-QRLDR  131 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEE--EEES-SCCBE
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEE--EEcC-CeEEE
Confidence            89999999999999999999997677755667777  4443 36665

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.54  E-value=0.0011  Score=40.08  Aligned_cols=17  Identities=41%  Similarity=0.561  Sum_probs=14.7

Q ss_pred             CCCCCCCcCCCCCCCcc
Q 025666           89 SGKRGRGRVSGHESKHY  105 (249)
Q Consensus        89 ~~kr~rGrP~gs~~k~k  105 (249)
                      ..||+||||.|||||..
T Consensus         3 tpKrpRgRpkGSKNk~~   19 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKGA   19 (26)
T ss_dssp             SCCCCSSCCTTCCCCSC
T ss_pred             CCcCCCCCcCcccccCc
Confidence            35999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	249
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	5e-22
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	8e-16

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 86.5 bits (214), Expect = 5e-22
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 12/129 (9%)

Query: 122 GTNFTPHVITINAGEDVMMKVISFS-QQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 180
            +    + + +  G++V  ++ +F  Q   RA  I    G +++V LR       T +  
Sbjct: 3   ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLT 61

Query: 181 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIA 240
           G FE++SL+G+  LT           + ++++ P G ++GG +         ++++  I 
Sbjct: 62  GTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELV--IG 111

Query: 241 SFLFLIFGR 249
               L F R
Sbjct: 112 ELPALTFSR 120

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 70.0 bits (171), Expect = 8e-16
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 128 HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFE 184
            ++ ++ G+D++ ++  F ++       +SA G + +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 185 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFI 239
           ILSLSG+  + +S+        + V L   DG V GG +    V A  V V+   
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLPLS 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.93

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=2e-27  Score=193.12  Aligned_cols=118  Identities=23%  Similarity=0.399  Sum_probs=107.3

Q ss_pred             CCCCceeEEEEEcCCCcHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeeccCCCC
Q 025666          121 VGTNFTPHVITINAGEDVMMKVISFSQ-QGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQG  199 (249)
Q Consensus       121 ~g~~~~phVIrv~~GEDIve~I~~faq-~~~~aicILSaiGaVsnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~~~~~  199 (249)
                      .++..|.|++||++||||+++|++||+ ++.+++||++++|++++|+|++|+.. ....++|+|||+||+|||...+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCC---
Confidence            357889999999999999999999995 66678999999999999999999876 5678999999999999998765   


Q ss_pred             CcCCCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666          200 TRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR  249 (249)
Q Consensus       200 ~~~~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R  249 (249)
                           .|||++|+|.||+++||||.+.++++.+++|++  ..|....|+|
T Consensus        78 -----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi--~~l~~~~~~R  120 (136)
T d2hx0a1          78 -----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVI--GELPALTFSR  120 (136)
T ss_dssp             -----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEE--EECTTEEEEE
T ss_pred             -----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEE--EEccCCceEE
Confidence                 489999999999999999998778888999999  9999988876

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=6.4e-26  Score=183.39  Aligned_cols=116  Identities=23%  Similarity=0.250  Sum_probs=101.2

Q ss_pred             ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCCC---eeeeecceeEEEeeeeeeccCCCCCc
Q 025666          125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---TLTYEGRFEILSLSGSFMLTESQGTR  201 (249)
Q Consensus       125 ~~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~~---~~t~eG~fEILSLsGsis~~~~~~~~  201 (249)
                      -|.|+++|++||||+++|++||++..+..|+++++|++++++|++++++..   .+.++|+|||+||+|||...+++   
T Consensus         9 gr~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~---   85 (138)
T d2h6la1           9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK---   85 (138)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE---
T ss_pred             CCEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC---
Confidence            489999999999999999999988888889999999999999999987653   67899999999999999988875   


Q ss_pred             CCCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666          202 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR  249 (249)
Q Consensus       202 ~~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R  249 (249)
                       ++.|+|+++++ ||+++||||....+.++++.|+    .+....|.|
T Consensus        86 -p~~HlH~~~~~-~g~~~gGHl~~~~v~~~e~~i~----~~~~~~~~R  127 (138)
T d2h6la1          86 -PFCHIHVLLGK-DGEVYGGHLFSAEVFACEVFVL----PLSGEAPER  127 (138)
T ss_dssp             -EEEEEEEEEEE-BTEEEEEEEEEEEEEEEEEEEE----ECBSCCCBE
T ss_pred             -cEEEEEEEECC-CCCEEEEEeCccEEEEEEEEEE----EecCCceEE
Confidence             89999999997 7999999999888876544443    466766665