Citrus Sinensis ID: 025671

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQDETTSGAKKE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHEEEEEcccHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHcHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mstsidllsfspppssmlsrtqfsfthkptfllsskkeSFFTLRASAadngagvsapavtveepkvreasegptesngaveapevkavnkfedpkwvngtwdlkqfqkngqtdwDAVIDAEARRRKwlenspesssnddpvifdtsivpwwAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATwqdettsgakke
Flexible Loop (DISEMBL)
mstsidllsfspppssMLSRTQFSFTHKPTFLLSSKKESFFTLRASAAdngagvsapavtveepkvreasegptesngaveapevkavNKFEDPKWVNGTWDLKQfqkngqtdwDAVIDAEARRRKWlenspesssnddpviFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEettfydkqwqatwqdettsgakke
Low Complexity Region (SEG)
MSTSIDllsfspppssmlsRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQDETTSGAKKE
Disordered region (IsUnstruct)
***************************************************************************************VNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEA******************VIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATW***********
Disordered Region (DISOPRED)
*******************************************************************************************EDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQ****************
Disordered Region (DISEMBL)
*********FSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVE*****************VEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKW**********DDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATW***********
Disordered Region (DISPRO)
*************************THKPTFLL*S*******************************************************FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQ**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQDETTSGAKKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
359495735	251	PREDICTED: uncharacterized protein LOC10	0.963	0.956	0.703	7e-93
255566759	259	transcription factor, putative [Ricinus	0.983	0.945	0.679	6e-92
224126625	258	light harvesting-like protein 3 [Populus	0.987	0.953	0.666	3e-91
224137948	257	light harvesting-like protein 3 [Populus	0.951	0.922	0.679	5e-91
356563395	264	PREDICTED: uncharacterized protein LOC10	0.987	0.931	0.645	1e-87
297745675	227	unnamed protein product [Vitis vinifera]	0.891	0.977	0.681	1e-86
449459006	266	PREDICTED: uncharacterized protein LOC10	0.963	0.902	0.665	2e-86
356510909	264	PREDICTED: uncharacterized protein LOC10	0.987	0.931	0.656	6e-86
388503762	258	unknown [Medicago truncatula]	1.0	0.965	0.635	6e-83
388502596	259	unknown [Lotus japonicus]	0.975	0.938	0.633	2e-82

>gi|359495735|ref|XP_003635074.1| PREDICTED: uncharacterized protein LOC100855146 [Vitis vinifera]

 Score =  345 bits (886), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 196/246 (79%), Gaps = 6/246 (2%)

Query: 10  FSPPPSSMLSRT--QFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVE----E 63
           FSPP  + L     + +FT KP+  L SKK     L A A +NGAG S  A TVE    E
Sbjct: 6   FSPPIPTHLPTLSPKPNFTLKPSLFLRSKKHQLLLLSAKATENGAGTSTSATTVEPEKAE 65

Query: 64  PKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEAR 123
            K  EA+   ++ NGA  A +V  V KFED KWV GTWDLKQF+ +G+T+WDAVIDAE R
Sbjct: 66  EKAPEAAVLDSQPNGAAAAGDVVLVTKFEDLKWVGGTWDLKQFETDGKTNWDAVIDAEVR 125

Query: 124 RRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSL 183
           RRKWLE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSL
Sbjct: 126 RRKWLEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSL 185

Query: 184 TGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQDETT 243
           TGVGLVDQM NFFCKTLLFVAVVGVLLIRKNED+ETLKKL++ETTFYDKQWQA+WQDET 
Sbjct: 186 TGVGLVDQMGNFFCKTLLFVAVVGVLLIRKNEDLETLKKLVDETTFYDKQWQASWQDETP 245

Query: 244 SGAKKE 249
           S +K +
Sbjct: 246 SSSKND 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566759|ref|XP_002524363.1| transcription factor, putative [Ricinus communis] gi|223536324|gb|EEF37974.1| transcription factor, putative [Ricinus communis]

 Score =  342 bits (878), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 176/259 (67%), Positives = 201/259 (77%), Gaps = 14/259 (5%)

Query: 4   SIDLLSFSPPPSSMLSRTQFSFTH---KPTFLLSSKKESF-FTLRASAADNGAGVSAPAV 59
           SI +  FSPPP+  L R+  S  H   KPT  L+     F F+   ++ DNGAG+SA A 
Sbjct: 2   SISMALFSPPPTQFL-RSLSSKPHLLTKPTSFLTPINPPFLFSAPKASTDNGAGISAAAA 60

Query: 60  TVEEPKVRE---------ASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNG 110
            VEEPK  E         A E    SNGAV+  EVK  +KF DP+W+ GTWDLKQFQK+G
Sbjct: 61  AVEEPKEAEPKAAEPSPAAVESSLGSNGAVKDAEVKLESKFVDPRWIGGTWDLKQFQKDG 120

Query: 111 QTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAA 170
            TDWD+VIDAE RRRKWLE++PESS+NDDPV+FDTSI+PWWAW+KRFHLPEAELLNGRAA
Sbjct: 121 STDWDSVIDAEVRRRKWLESNPESSTNDDPVVFDTSIIPWWAWMKRFHLPEAELLNGRAA 180

Query: 171 MIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFY 230
           M+GFFMAY VDSLTGVGLVDQM NFFCKTLLF+AV GVLLIRKNEDIETLKKL++ETTFY
Sbjct: 181 MVGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFIAVAGVLLIRKNEDIETLKKLVDETTFY 240

Query: 231 DKQWQATWQDETTSGAKKE 249
           DKQWQATWQDET S +K E
Sbjct: 241 DKQWQATWQDETPSSSKTE 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126625|ref|XP_002329601.1| light harvesting-like protein 3 [Populus trichocarpa] gi|222870310|gb|EEF07441.1| light harvesting-like protein 3 [Populus trichocarpa]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 174/261 (66%), Positives = 203/261 (77%), Gaps = 15/261 (5%)

Query: 1   MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFF--TLRASAADNGAGVSAPA 58
           MS S+ L S   PP +    ++  FT+K T  L      F   T +AS  + GAGVSA A
Sbjct: 1   MSISMSLFS---PPLTRFPPSKPHFTYKSTLSLGPTNRPFLLSTPKASTDNGGAGVSASA 57

Query: 59  VTVEEPKVREASEGPTES--------NGAVEA--PEVKAVNKFEDPKWVNGTWDLKQFQK 108
            TVEEPK+ + +   ++S        NGAV A   E   V+KF DP+W++GTWDLKQFQK
Sbjct: 58  ATVEEPKLEQKTPESSDSVPVAKNSSNGAVAAGGEEKVEVSKFGDPRWISGTWDLKQFQK 117

Query: 109 NGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGR 168
           +G+TDWDAVIDAEARRRKWL+ +PESSSN+DPV+FDTSI+PWW W+KRFHLPEAELLNGR
Sbjct: 118 DGKTDWDAVIDAEARRRKWLQCNPESSSNNDPVVFDTSIIPWWTWMKRFHLPEAELLNGR 177

Query: 169 AAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETT 228
           AAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNED+ET+KKLLEETT
Sbjct: 178 AAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDLETIKKLLEETT 237

Query: 229 FYDKQWQATWQDETTSGAKKE 249
           FYDKQWQATWQDE ++  K +
Sbjct: 238 FYDKQWQATWQDEKSTSPKDD 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137948|ref|XP_002326480.1| light harvesting-like protein 3 [Populus trichocarpa] gi|118482026|gb|ABK92944.1| unknown [Populus trichocarpa] gi|222833802|gb|EEE72279.1| light harvesting-like protein 3 [Populus trichocarpa]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 178/262 (67%), Positives = 204/262 (77%), Gaps = 25/262 (9%)

Query: 8   LSFSPPPSSMLSRTQFSFTHK------PTFLLSSKKESFF--TLRASAADNGAGVSAPAV 59
           +S  PPP   L+R   SF+ K      PT  L      F   T +AS  D GAGVSA + 
Sbjct: 1   MSLFPPP---LTRLPLSFSSKHHIIFKPTLSLRPTSPPFLLSTSKASTDDGGAGVSASSA 57

Query: 60  TVEEPKVREASEGPTES--------NGAVEAP----EVKAVNKFEDPKWVNGTWDLKQFQ 107
           TVEEPK+ + +   +ES        NGAV AP    EV+ V+KFEDP+W++GTWDLKQF+
Sbjct: 58  TVEEPKLEQKAPDSSESVPVAEKNSNGAV-APGGGVEVE-VSKFEDPRWISGTWDLKQFE 115

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           K+G+TDWDAVIDAE RRRKWLE +PESSSNDDPV+FDTSI+PWWAW+KRFHLPEAELLNG
Sbjct: 116 KDGKTDWDAVIDAEVRRRKWLEGNPESSSNDDPVVFDTSIIPWWAWMKRFHLPEAELLNG 175

Query: 168 RAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEET 227
           RAAMIGFFMAYLVDSLTGVG+VDQM NFFCKTLLFVAVVGVLLIRKNED+ET+K LLEET
Sbjct: 176 RAAMIGFFMAYLVDSLTGVGVVDQMGNFFCKTLLFVAVVGVLLIRKNEDLETIKTLLEET 235

Query: 228 TFYDKQWQATWQDETTSGAKKE 249
           TFYD+QWQATWQDET+S  K E
Sbjct: 236 TFYDRQWQATWQDETSSIPKNE 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563395|ref|XP_003549949.1| PREDICTED: uncharacterized protein LOC100780555 [Glycine max]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/262 (64%), Positives = 199/262 (75%), Gaps = 16/262 (6%)

Query: 2   STSIDLLSFSPP------PSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVS 55
           S S  + SFSPP      PSS  S+ +  + +   F L SK  +F  L+A+AA+NG G +
Sbjct: 5   SMSTTMASFSPPTHFSAAPSS--SKLRLVYKNNNFFSLRSKSLAFSPLKAAAAENGVGTA 62

Query: 56  A---PAVTVEEPKVREASEGPT-ESNG----AVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
               P   V  P++   + G +  +NG    AVE+ EVK    F DP+WV+GTWDLKQFQ
Sbjct: 63  VEPPPEQAVSVPELPPPAVGNSVGTNGSAAVAVESEEVKVKTGFVDPRWVSGTWDLKQFQ 122

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           KNG TDWDAVIDAEARRRKWLE++PESSSN++PV+FDTSI+PWWAW+KRFHLPEAELLNG
Sbjct: 123 KNGTTDWDAVIDAEARRRKWLEDNPESSSNENPVVFDTSIIPWWAWMKRFHLPEAELLNG 182

Query: 168 RAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEET 227
           RAAM+GFFMAY VDSLTGVGLVDQM NFFCKTLLFVAV+GVLLIRKNED E LKKL +ET
Sbjct: 183 RAAMVGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVLGVLLIRKNEDFENLKKLFDET 242

Query: 228 TFYDKQWQATWQDETTSGAKKE 249
           T YDKQWQATWQDE +S +K E
Sbjct: 243 TLYDKQWQATWQDENSSTSKNE 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745675|emb|CBI40929.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 165/242 (68%), Positives = 185/242 (76%), Gaps = 20/242 (8%)

Query: 10  FSPPPSSMLSRT--QFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVR 67
           FSPP  + L     + +FT KP+  L SKK     L A A +NGAG S  A TVE  K  
Sbjct: 4   FSPPIPTHLPTLSPKPNFTLKPSLFLRSKKHQLLLLSAKATENGAGTSTSATTVEPEKAE 63

Query: 68  EASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKW 127
           E            +APE        D KWV GTWDLKQF+ +G+T+WDAVIDAE RRRKW
Sbjct: 64  E------------KAPEAA------DLKWVGGTWDLKQFETDGKTNWDAVIDAEVRRRKW 105

Query: 128 LENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVG 187
           LE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVG
Sbjct: 106 LEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVG 165

Query: 188 LVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQDETTSGAK 247
           LVDQM NFFCKTLLFVAVVGVLLIRKNED+ETLKKL++ETTFYDKQWQA+WQDET S +K
Sbjct: 166 LVDQMGNFFCKTLLFVAVVGVLLIRKNEDLETLKKLVDETTFYDKQWQASWQDETPSSSK 225

Query: 248 KE 249
            +
Sbjct: 226 ND 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459006|ref|XP_004147237.1| PREDICTED: uncharacterized protein LOC101206464 [Cucumis sativus] gi|449510491|ref|XP_004163681.1| PREDICTED: uncharacterized LOC101206464 [Cucumis sativus]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 177/266 (66%), Positives = 198/266 (74%), Gaps = 26/266 (9%)

Query: 1   MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKK-----ESFFTLRASAADNGAGVS 55
            S S  L +FSP   +    T FSF  +P   L ++       S FT+RA+A DNGAG+S
Sbjct: 7   FSPSSHLSTFSPSHHT----THFSF--RPFSSLRTRNPSSSSSSLFTIRATA-DNGAGIS 59

Query: 56  APAVTV------EEPKVREASEGPTE------SNGAVEAPEVKAV--NKFEDPKWVNGTW 101
             + TV      E+     A   P E      +NG+V A E      +KFEDPKWVNGTW
Sbjct: 60  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 119

Query: 102 DLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPE 161
           DL QFQKNG TDWDAVIDAEARRRKWLEN+PESSSN+DPV+FDTSIVPWWAWIKR+HLPE
Sbjct: 120 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 179

Query: 162 AELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLK 221
           AELLNGRAAM+GFFMAY VDSLTGVGLV QM NFFCKTLLFVAVVGVLLIRKNEDIETLK
Sbjct: 180 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 239

Query: 222 KLLEETTFYDKQWQATWQDETTSGAK 247
           KL++ETTFYDKQWQATWQDET+   K
Sbjct: 240 KLIDETTFYDKQWQATWQDETSGSGK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510909|ref|XP_003524176.1| PREDICTED: uncharacterized protein LOC100789538 [Glycine max]

 Score =  323 bits (827), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 172/262 (65%), Positives = 198/262 (75%), Gaps = 16/262 (6%)

Query: 2   STSIDLLSFSPP------PSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAG-- 53
           S S  + SFSPP      PSS  S+ +  + +   F L S+  S   L+A+A++NG G  
Sbjct: 5   SMSTTMASFSPPTHFSATPSS--SKPRLVYKNNFFFSLRSRSLSLSPLKAAASENGVGTA 62

Query: 54  VSAP---AVTVEEPKVREASEGPTESNG---AVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
           V  P   AV V EP +         +NG   AVE+  VK  + F DP+WV GTWDLKQFQ
Sbjct: 63  VEPPPEQAVPVPEPSLPPVDNSSVGTNGSAVAVESEVVKVQSSFVDPRWVAGTWDLKQFQ 122

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           KNG TDWDAVIDAEARRRKWLE++PESSSN++PV+FDTSIVPWWAW+KRFHLPEAELLNG
Sbjct: 123 KNGTTDWDAVIDAEARRRKWLEDNPESSSNENPVVFDTSIVPWWAWMKRFHLPEAELLNG 182

Query: 168 RAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEET 227
           RAAMIGFFMAY VDSLTGVGLVDQMSNFFCKTLLFVAV+GVLLIRKNED+E LKKL +ET
Sbjct: 183 RAAMIGFFMAYFVDSLTGVGLVDQMSNFFCKTLLFVAVLGVLLIRKNEDLENLKKLFDET 242

Query: 228 TFYDKQWQATWQDETTSGAKKE 249
           T YDKQWQATWQDE +S +K E
Sbjct: 243 TLYDKQWQATWQDENSSTSKNE 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503762|gb|AFK39947.1| unknown [Medicago truncatula]

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 164/258 (63%), Positives = 188/258 (72%), Gaps = 9/258 (3%)

Query: 1   MSTSIDLLSFSPPPSSMLSRTQFSFTHKPT--------FLLSSKKESFFTLRASAADNGA 52
           MST++ +   S  P + +S T  S +            F L+ + ++   L  S     A
Sbjct: 1   MSTTMSMSMASFSPLTRISTTYSSLSKPHHHPNHSNNHFTLTLRPKNLPLLSLSPLRASA 60

Query: 53  GVSAPAVTVEEPKVREASEGPTESNGAVE-APEVKAVNKFEDPKWVNGTWDLKQFQKNGQ 111
           G S  A T  +P     S G   S  AV  A EVK  + F DP+WV GTWDL QF+KNG 
Sbjct: 61  GTSDSAETAVKPPPENISVGTNGSASAVPVAEEVKVSSAFVDPRWVAGTWDLMQFRKNGT 120

Query: 112 TDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAM 171
           TDWDAVIDAEARRRKWLE +PESSSND+PV+FDTSIVPWWAWIKRFHLPEAELLNGRAAM
Sbjct: 121 TDWDAVIDAEARRRKWLETNPESSSNDNPVVFDTSIVPWWAWIKRFHLPEAELLNGRAAM 180

Query: 172 IGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYD 231
           IGFFM YLVDSLTGVGLVDQM+NFFCKTLLFVAV GVLLIRKNED++T KKLLEETTFYD
Sbjct: 181 IGFFMTYLVDSLTGVGLVDQMNNFFCKTLLFVAVGGVLLIRKNEDVDTFKKLLEETTFYD 240

Query: 232 KQWQATWQDETTSGAKKE 249
           KQWQATWQDE +S ++K+
Sbjct: 241 KQWQATWQDENSSTSRKD 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502596|gb|AFK39364.1| unknown [Lotus japonicus]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/262 (63%), Positives = 192/262 (73%), Gaps = 19/262 (7%)

Query: 2   STSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLR-----------ASAADN 50
           + S  + SFSP   +  S T  S   KP     ++   FFTLR            +++DN
Sbjct: 3   TMSTTMASFSP--LTRFSATLSSSNSKPHL---TQNHFFFTLRPKNLPLSPLKWKASSDN 57

Query: 51  GAGVSAPAVT-VEEP--KVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
           GAG S  A T VE P  K+   + G   S  A  A E+K    FEDP+WV GTWDL QF+
Sbjct: 58  GAGASDSAATAVESPPEKISVGTNGSASSAAAAAAEELKIPGGFEDPRWVAGTWDLMQFR 117

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           KNG TDWDAVIDAEARRRKWL+++PESSSN++PV+FDTSIVPWWAWIKRFHLPEAE LNG
Sbjct: 118 KNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEAERLNG 177

Query: 168 RAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEET 227
           RAAMIGFFMAYLVDSLTGVGLVDQ +NF CKTLLF+AV GVLLIRKNED+E LKKL +ET
Sbjct: 178 RAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKKLFDET 237

Query: 228 TFYDKQWQATWQDETTSGAKKE 249
           TFYDKQWQATWQDE ++ +KKE
Sbjct: 238 TFYDKQWQATWQDENSNTSKKE 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2151972	258	LIL3:2 "AT5G47110" [Arabidopsi	0.879	0.848	0.625	3.6e-73
TAIR|locus:2129296	262	LIL3:1 [Arabidopsis thaliana (	0.911	0.866	0.602	3.2e-72

TAIR|locus:2151972 LIL3:2 "AT5G47110" [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 145/232 (62%), Positives = 182/232 (78%)

Query:    30 TFLLSSKKESFFTLRASAADNGAG-----VSAPA-VTVEEPKVREASEGPTES-NGAV-- 80
             T LLS+K+ S  ++  +++DNG       +  PA V VEE  V+  +E  + S NGAV  
Sbjct:    27 TSLLSTKRFSLISVPRASSDNGTTSPVVEIPKPASVAVEEVPVKSPAESSSASENGAVGG 86

Query:    81 EAPE--VKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSND 138
             EA +   + V K+++ KWVNGTWDLKQF+K+G+TDWD+VI +EA+RRKWLE++PE++SND
Sbjct:    87 EATDSSTETVIKYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSND 146

Query:   139 DPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCK 198
             + V+FDTSI+PWWAW+KR+HLPEAELLNGRAAMIGFFMAY VDSLTGVGLVDQM NFFCK
Sbjct:   147 ELVVFDTSIIPWWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCK 206

Query:   199 TLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQ--DETTSGAKK 248
             TLLFVAV GVL IRKNED++ LK L +ETT YDKQWQA W+  D +T  +KK
Sbjct:   207 TLLFVAVAGVLFIRKNEDLDKLKDLFDETTLYDKQWQAAWKEPDSSTVSSKK 258

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2129296 LIL3:1 [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 144/239 (60%), Positives = 175/239 (73%)

Query:    23 FSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPA---VTVEEPKVR----EASEGPTE 75
             FS      F L S   +     +++      V AP    V V+EP       +  E  T 
Sbjct:    24 FSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVEVIVKEPPQSTPAVKKEETATA 83

Query:    76 SNGAVEAPEVK---AVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSP 132
              N AVE  E+K   +V KF+D +W+NGTWDLKQF+K+G+TDWD+VI AEA+RRKWLE +P
Sbjct:    84 KNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENP 143

Query:   133 ESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQM 192
             E++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNGRAAMIGFFMAY VDSLTGVGLVDQM
Sbjct:   144 ETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQM 203

Query:   193 SNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQ--DETTSGAKKE 249
              NFFCKTLLFVAV GVL IRKNED++ LK L +ETT YDKQWQA W+  D+ + G+KK+
Sbjct:   204 GNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFDETTLYDKQWQAAWKNDDDESLGSKKK 262


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      249       236   0.00089  113 3  11 22  0.45    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  198 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.07u 0.16s 22.23t   Elapsed:  00:00:01
  Total cpu time:  22.07u 0.16s 22.23t   Elapsed:  00:00:01
  Start:  Fri May 10 21:04:12 2013   End:  Fri May 10 21:04:13 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
PLN00014	250	PLN00014, PLN00014, light-harvesting-like protein	1e-115

>gnl|CDD|177653 PLN00014, PLN00014, light-harvesting-like protein 3; Provisional

 Score =  330 bits (847), Expect = e-115
 Identities = 141/247 (57%), Positives = 174/247 (70%), Gaps = 4/247 (1%)

Query: 7   LLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKE-SFFTLRASAADN-GAGVSAPAVTVEEP 64
            +S S   SS L  ++ +   + +  L +K E S  ++  ++ D  G     P+      
Sbjct: 3   SMSLSRASSSTLVVSKPNPQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGG 62

Query: 65  KVR--EASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEA 122
            +    A+        A +     +V KFEDP+W NGTWDL QF+K+G+TDWDAVIDAE 
Sbjct: 63  TLEGEAAAGKDPGPAAAAKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDAEV 122

Query: 123 RRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMAYLVDS 182
            RRKWLE++PE+SSND+PV+FDTSI+PWWAW+KRFHLPEAELLNGRAAM+GFFMAYLVDS
Sbjct: 123 VRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDS 182

Query: 183 LTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQDET 242
           LTGVGLVDQM NFFCKTLLFV V GVLLIRKNED++TLKKL +E TFYDKQWQATW+D+ 
Sbjct: 183 LTGVGLVDQMGNFFCKTLLFVTVAGVLLIRKNEDLDTLKKLADEATFYDKQWQATWKDQD 242

Query: 243 TSGAKKE 249
                  
Sbjct: 243 RPSTSSS 249

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PLN00014	250	light-harvesting-like protein 3; Provisional	100.0
PHA02337	35	putative high light inducible protein	99.31
PLN00084	214	photosystem II subunit S (PsbS); Provisional	98.9
PLN00187	286	photosystem II light-harvesting complex II protein	98.6
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.58
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	98.5
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.47
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.25
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	98.25
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	98.11
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	98.1
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	98.05
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	97.91
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.9
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	97.86
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	97.85
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	97.76
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	97.75
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	97.72
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	97.71
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.7
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	97.64
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	97.6
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	97.57
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.55
PLN00187	286	photosystem II light-harvesting complex II protein	97.52
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	97.34
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	97.29
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	96.54
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	96.45
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	95.38
PLN02449	485	ferrochelatase	93.66

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=100.00  E-value=3.8e-81  Score=556.79  Aligned_cols=242  Identities=57%  Similarity=0.984  Sum_probs=206.4

Q ss_pred             ccccccCCCC-CCCccCCccccccCcceeccCCC-cccchhhcccccCCCccC-CCcccccCCCccc--CCCCCCCCCCc
Q 025671            5 IDLLSFSPPP-SSMLSRTQFSFTHKPTFLLSSKK-ESFFTLRASAADNGAGVS-APAVTVEEPKVRE--ASEGPTESNGA   79 (249)
Q Consensus         5 ~~~~~fsp~~-~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ve~p~~~~--~~~~~~~~~~a   79 (249)
                      ++|++++++. +..+++|+  ..+++..+|++++ .+++...+++.+++..++ .++..++.++.+.  +.-...+..++
T Consensus         2 ~~~sl~~~~~~~~~~~k~~--~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~pl~~gg~l~g~~a~gk~~~~aa~   79 (250)
T PLN00014          2 ISMSLSRASSSTLVVSKPN--PQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGGTLEGEAAAGKDPGPAAA   79 (250)
T ss_pred             cccccCCCccccccccCCC--cccccccccccccccceEEEeecccCCCCccccCCCccccCCCcccccccccCcccccc
Confidence            5667777665 44457888  8899999999999 888888888888865443 2222333333222  11111222223


Q ss_pred             ccCcccccCCCccCCceeccccccccccccCCCCcchhhHHHHHHhhhhhcCCCCCCCCCCceecCCCCCchhhhhccCC
Q 025671           80 VEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHL  159 (249)
Q Consensus        80 ~~~~~~~~~~~f~d~rw~~g~wdl~~F~~~g~~dwd~VI~AE~~~Rk~le~~P~assne~p~~fdts~vP~wgf~~~fg~  159 (249)
                      +......++++|+||||+||||||+||++||+||||+|||||++||||+|+||++++|++|++||+|+||||.|+||||+
T Consensus        80 ~~~~~~~~~~~f~d~RW~~GtWDl~qF~~dG~~DWd~vIdaEv~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~l  159 (250)
T PLN00014         80 AKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDAEVVRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHL  159 (250)
T ss_pred             cccccccccccccCchhcCCcccHHHHhhcCCcchHHHHHHHHHHHHHHhhCccccCCCCCceeecccccHHHHHHhccC
Confidence            33334456899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHHHHHHHHHHhhhheeecccchHHHHhhcccccccchhhhcccc
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQ  239 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g~~Ll~vaVaG~llirkneDld~lk~L~~e~tfyDkqw~atw~  239 (249)
                      +++|++|||+|||||++++++|++||+|+++|+|+++|++++|++|+|+++||||||||+||+|+||+||||||||||||
T Consensus       160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k~llfv~v~gvlliRk~eDl~~lk~L~dE~TfYDKQWqAtW~  239 (250)
T PLN00014        160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVTVAGVLLIRKNEDLDTLKKLADEATFYDKQWQATWK  239 (250)
T ss_pred             chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhHHHHHHHHHHheeeeehhhHHHHHHHHHhhhhHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC
Q 025671          240 DETTSGAKK  248 (249)
Q Consensus       240 ~~~~~~~k~  248 (249)
                      |++.+++++
T Consensus       240 ~~~~~s~~~  248 (250)
T PLN00014        240 DQDRPSTSS  248 (250)
T ss_pred             CCCCCCccc
Confidence            999987765

>PHA02337 putative high light inducible protein

Probab=99.31  E-value=1.5e-12  Score=87.60  Aligned_cols=31  Identities=45%  Similarity=0.554  Sum_probs=29.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD  190 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~  190 (249)
                      ++||+||||+|||||++++++|++|||+|..
T Consensus         3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG   33 (35)
T PHA02337          3 PEAEIFNGWLAMIGFVAAVGAYATTGQIIPG   33 (35)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence            7899999999999999999999999998753

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=98.90  E-value=9e-10  Score=97.04  Aligned_cols=35  Identities=43%  Similarity=0.691  Sum_probs=32.7

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHh-CCchhHhhhH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLT-GVGLVDQMSN  194 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~T-G~gil~Qlg~  194 (249)
                      +..|+||||+||+||+++++.|++| |+|+++|++.
T Consensus       136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~  171 (214)
T PLN00084        136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG  171 (214)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence            3479999999999999999999999 9999999975

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=98.60  E-value=3.4e-08  Score=91.28  Aligned_cols=74  Identities=31%  Similarity=0.481  Sum_probs=57.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhh-------hHHH---------HHHHHHHHHhhhheeecccchHHHHhh
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQM-------SNFF---------CKTLLFVAVVGVLLIRKNEDIETLKKL  223 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Ql-------g~~~---------g~~Ll~vaVaG~llirkneDld~lk~L  223 (249)
                      +++|++|||+||+|+++.++.|+++|....+.-       ..|+         ....+-+.++|+++++|+.+.+..+.+
T Consensus       134 REaELiHGRwAMLAvaG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~~~~~~~  213 (286)
T PLN00187        134 RECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRL  213 (286)
T ss_pred             HHHHhhhhHHHHHHhhchhhHHhccCCcccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Confidence            799999999999999999999998875321100       1122         122345668999999999998888999


Q ss_pred             cccccccchh
Q 025671          224 LEETTFYDKQ  233 (249)
Q Consensus       224 ~~e~tfyDkq  233 (249)
                      |++..+||+-
T Consensus       214 yPGg~~FDPl  223 (286)
T PLN00187        214 YPGGKFFDPL  223 (286)
T ss_pred             CCcccccccc
Confidence            9999889973

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.58  E-value=1.6e-08  Score=82.80  Aligned_cols=74  Identities=22%  Similarity=0.180  Sum_probs=52.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCch----hHhh-----h---HHHHHHHHHHHHhhhheeecccchH------HHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGL----VDQM-----S---NFFCKTLLFVAVVGVLLIRKNEDIE------TLK  221 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gi----l~Ql-----g---~~~g~~Ll~vaVaG~llirkneDld------~lk  221 (249)
                      +++|++|||+||+||++.++.|+.++.+.    .+|.     +   ......+..++++|++.+.+..+..      ...
T Consensus        30 R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~  109 (156)
T PF00504_consen   30 REAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIPVPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKD  109 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSSSHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSS
T ss_pred             HHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhhhhhHHHHHHHHHHhHhhhhhcccccCCccccccc
Confidence            89999999999999999999999998643    2222     1   1222334666777887777666542      234


Q ss_pred             hhcccccccchh
Q 025671          222 KLLEETTFYDKQ  233 (249)
Q Consensus       222 ~L~~e~tfyDkq  233 (249)
                      ..+++...||+-
T Consensus       110 ~~~pG~~~~dpl  121 (156)
T PF00504_consen  110 GRYPGDLGFDPL  121 (156)
T ss_dssp             SSSSSSSSSSTS
T ss_pred             ccCccccccchh
Confidence            567777778875

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=98.50  E-value=1.4e-07  Score=85.98  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=57.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhH--------HHHHHHHHHHHhhhheeecccchHH------------
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSN--------FFCKTLLFVAVVGVLLIRKNEDIET------------  219 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~--------~~g~~Ll~vaVaG~llirkneDld~------------  219 (249)
                      .++|+.|||+||+|+++.++.|++||...++.-..        +...+.+.+.++|.++.+|..|+.+            
T Consensus        96 r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~  175 (255)
T PLN00170         96 REAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPW  175 (255)
T ss_pred             HHHHhhccHHHHHHHHhhhhHHHccCCChhhCCccccccCccchHHHHHHHHHHhhhhhheeeccccCCccccccccccc
Confidence            78999999999999999999999999887664321        1122334577899999999877531            


Q ss_pred             -----------HHhhcccccccchhhhc
Q 025671          220 -----------LKKLLEETTFYDKQWQA  236 (249)
Q Consensus       220 -----------lk~L~~e~tfyDkqw~a  236 (249)
                                 -...|+++.||||-=-+
T Consensus       176 ~~~~~~f~~~~g~~~yPGG~~FDPLGl~  203 (255)
T PLN00170        176 SRTAENFANATGLQGYPGGKFFDPLGLA  203 (255)
T ss_pred             ccccccccccCCCcccCCCcccCccccc
Confidence                       02458888899985433

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.47  E-value=1.2e-07  Score=86.67  Aligned_cols=75  Identities=24%  Similarity=0.349  Sum_probs=55.9

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhh----------------HH----HHHHHHHHHHhhhheeecccchHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS----------------NF----FCKTLLFVAVVGVLLIRKNEDIET  219 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg----------------~~----~g~~Ll~vaVaG~llirkneDld~  219 (249)
                      +++|++|||+||+|+++.++.|++++.|++.+..                .|    ....++.+.++|+++++|.+|+.+
T Consensus        86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~  165 (262)
T PLN00048         86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYK  165 (262)
T ss_pred             HHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccC
Confidence            6899999999999999999999999888764321                01    123356667899999999887421


Q ss_pred             --------H-----------Hhhcccccccchhh
Q 025671          220 --------L-----------KKLLEETTFYDKQW  234 (249)
Q Consensus       220 --------l-----------k~L~~e~tfyDkqw  234 (249)
                              +           ..+||+..+||+--
T Consensus       166 pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlG  199 (262)
T PLN00048        166 PGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLG  199 (262)
T ss_pred             CCcccccccccchhccccccccccccccccCccc
Confidence                    1           23688887888843

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.25  E-value=5.6e-07  Score=81.89  Aligned_cols=59  Identities=29%  Similarity=0.478  Sum_probs=45.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHh-----hhH--HHH----HHHHHHHHhhhheeecccchH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQ-----MSN--FFC----KTLLFVAVVGVLLIRKNEDIE  218 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Q-----lg~--~~g----~~Ll~vaVaG~llirkneDld  218 (249)
                      .++|+.|||+||+|+++.++.|++|+.|++.+     .+.  +++    ...+.+.++|+++++|.+|+.
T Consensus        92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~  161 (250)
T PLN00101         92 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK  161 (250)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHHHHhhccc
Confidence            78999999999999999999999999987631     121  222    223346788999999987754

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=98.25  E-value=6.5e-07  Score=82.12  Aligned_cols=73  Identities=16%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhh-----hH--H----HHHHHHHHHHhhhheeecccchHH-----H---
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQM-----SN--F----FCKTLLFVAVVGVLLIRKNEDIET-----L---  220 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Ql-----g~--~----~g~~Ll~vaVaG~llirkneDld~-----l---  220 (249)
                      .++|++|||+||+|+++.++.|++++.|++...     +.  +    .....+.+.++|+++++|.+|+.+     +   
T Consensus       101 r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~  180 (267)
T PLN00098        101 AQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPK  180 (267)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCcccccccc
Confidence            789999999999999999999999988775522     11  1    112234455789999988766421     1   


Q ss_pred             ---------Hhhcccccccch
Q 025671          221 ---------KKLLEETTFYDK  232 (249)
Q Consensus       221 ---------k~L~~e~tfyDk  232 (249)
                               ...||+.-+|||
T Consensus       181 ~~~~~~~~~d~~yPGg~~FDP  201 (267)
T PLN00098        181 LPNKTNPKPDVGYPGGLWFDP  201 (267)
T ss_pred             ccccccCCCCCCCCCCccCCc
Confidence                     235788877887

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=98.11  E-value=1.9e-06  Score=78.93  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchh-H------------------hhh--------HHHHHHHHHHHHhhhheee
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLV-D------------------QMS--------NFFCKTLLFVAVVGVLLIR  212 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil-~------------------Qlg--------~~~g~~Ll~vaVaG~llir  212 (249)
                      .++|++|||+||+|+++.++.|++++.++. .                  .++        .......+.+.++|+++.+
T Consensus        92 re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~  171 (262)
T PLN00025         92 RELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY  171 (262)
T ss_pred             HHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHh
Confidence            789999999999999999999999876652 1                  111        0112223455568999988


Q ss_pred             cccchH---HHHhhcccccccch
Q 025671          213 KNEDIE---TLKKLLEETTFYDK  232 (249)
Q Consensus       213 kneDld---~lk~L~~e~tfyDk  232 (249)
                      |..+..   ....+||+.. ||+
T Consensus       172 r~~~~~~~~~~d~~yPG~~-FDP  193 (262)
T PLN00025        172 RVNGGPLGEGLDPLYPGGS-FDP  193 (262)
T ss_pred             cccCCcccccccCcCCccc-CCc
Confidence            876632   1234899886 887

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=98.10  E-value=1.8e-06  Score=78.51  Aligned_cols=59  Identities=25%  Similarity=0.379  Sum_probs=42.8

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhH---h--hhH---HH----HHHHHHHHHhhhheeecccchH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD---Q--MSN---FF----CKTLLFVAVVGVLLIRKNEDIE  218 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~---Q--lg~---~~----g~~Ll~vaVaG~llirkneDld  218 (249)
                      .++|+.|||+||+|+++.++.|++++.++..   .  .+.   ++    ..+.+.+.++|.++++|..|+.
T Consensus        83 r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~  153 (244)
T PLN00097         83 VQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMK  153 (244)
T ss_pred             HHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCCcchhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence            6899999999999999999999999887631   1  110   11    1233455568889998877653

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=98.05  E-value=2.6e-06  Score=77.64  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=49.5

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhH-----hhh-------HHHHHHHHHHHHhhhheeecccchH---------
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD-----QMS-------NFFCKTLLFVAVVGVLLIRKNEDIE---------  218 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~-----Qlg-------~~~g~~Ll~vaVaG~llirkneDld---------  218 (249)
                      .++|+.|||+||+|+++.++.|+++..++..     ..+       ......++.+.++|+++.+|..+..         
T Consensus        84 r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g  163 (252)
T PLN00147         84 VQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEG  163 (252)
T ss_pred             HHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHHHhhccccCCCcccccc
Confidence            7899999999999999999999998766421     111       1111223345688999988754432         


Q ss_pred             ----------HHHhhcccccccch
Q 025671          219 ----------TLKKLLEETTFYDK  232 (249)
Q Consensus       219 ----------~lk~L~~e~tfyDk  232 (249)
                                .++.-|++...|||
T Consensus       164 ~~~g~~~~~~~~~~~yPGd~~FDP  187 (252)
T PLN00147        164 SFFGLEAALEGLEPGYPGGPLFNP  187 (252)
T ss_pred             ccccccccccccCCCCcccccCCc
Confidence                      12344888877887

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=97.91  E-value=1.1e-05  Score=73.65  Aligned_cols=38  Identities=26%  Similarity=0.428  Sum_probs=34.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      +..|+.|||+||+|+++.++.|++||+|.++++...+.
T Consensus       201 k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hla  238 (252)
T PLN00147        201 KLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLS  238 (252)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            56899999999999999999999999999999876544

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.90  E-value=1e-05  Score=76.29  Aligned_cols=29  Identities=24%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCch
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGL  188 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gi  188 (249)
                      .++|++|||+||+|+++.++.|++++.+.
T Consensus       149 reaELkHGR~AMLA~~G~lv~e~l~~~g~  177 (324)
T PLN00171        149 FNFEILHARWAMLAALGVVIPEVLDLFGA  177 (324)
T ss_pred             HHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence            78999999999999999999999886554

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=97.86  E-value=1.1e-05  Score=73.21  Aligned_cols=72  Identities=15%  Similarity=0.117  Sum_probs=47.5

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCch-------------hHhhhH------HHHHHHHHHHHhhhheeecccchHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGL-------------VDQMSN------FFCKTLLFVAVVGVLLIRKNEDIETL  220 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gi-------------l~Qlg~------~~g~~Ll~vaVaG~llirkneDld~l  220 (249)
                      +++|++|||+||+|+++.++.|+++.-..             ....+.      ......+.+.++|++++.|....+..
T Consensus        83 r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~~~~  162 (243)
T PLN00099         83 KESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPE  162 (243)
T ss_pred             HHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence            68999999999999999999999653111             111111      01112233557888888665444445


Q ss_pred             Hhhcccccccch
Q 025671          221 KKLLEETTFYDK  232 (249)
Q Consensus       221 k~L~~e~tfyDk  232 (249)
                      ++.|++. .||+
T Consensus       163 ~~~yPGd-~FDP  173 (243)
T PLN00099        163 KKKYPGG-AFDP  173 (243)
T ss_pred             CCcCCCC-cCCc
Confidence            6789998 7887

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=97.85  E-value=1e-05  Score=73.81  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=33.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSN  194 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~  194 (249)
                      +..|+.|||+|||+|++.++.+++||+|.++++..
T Consensus       161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~  195 (246)
T PLN00100        161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA  195 (246)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence            68999999999999999999999999999999865

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=97.76  E-value=2e-05  Score=64.68  Aligned_cols=23  Identities=39%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDS  182 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl  182 (249)
                      +.+|++|||+|||||++.++.|.
T Consensus       134 ~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen  134 QLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            88999999999999999998873

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=97.75  E-value=1.9e-05  Score=70.04  Aligned_cols=31  Identities=32%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD  190 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~  190 (249)
                      ...|+.|||+||||+++.++.|++||++++.
T Consensus       178 ~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~  208 (209)
T PLN00089        178 KDKELKNGRLAMVAIGGIATGSAITGHGFPY  208 (209)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence            4579999999999999999999999999864

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=97.72  E-value=1.7e-05  Score=72.40  Aligned_cols=38  Identities=32%  Similarity=0.501  Sum_probs=34.5

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      +..|+.||||||++|++.++.++.||+|.++++...+.
T Consensus       201 k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hla  238 (250)
T PLN00101        201 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLS  238 (250)
T ss_pred             HHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhc
Confidence            66899999999999999999999999999999876543

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=97.71  E-value=2.9e-05  Score=70.49  Aligned_cols=38  Identities=21%  Similarity=0.439  Sum_probs=33.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHH-HHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVD-SLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vE-l~TG~gil~Qlg~~~g  197 (249)
                      +..|+.|||+|||||++.++.| ..||++.++++...+.
T Consensus       187 k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hla  225 (243)
T PLN00099        187 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA  225 (243)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhc
Confidence            6789999999999999999999 5799999999876544

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.70  E-value=2.9e-05  Score=71.32  Aligned_cols=38  Identities=26%  Similarity=0.498  Sum_probs=34.7

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      +..|+.|||+||+++++.++.+++||+|.++++...+.
T Consensus       207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hla  244 (262)
T PLN00025        207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  244 (262)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhc
Confidence            67899999999999999999999999999999876544

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=97.64  E-value=3.7e-05  Score=70.46  Aligned_cols=38  Identities=26%  Similarity=0.442  Sum_probs=34.2

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      ...|+.|||+||+++++.++.+++||+|.++++...+.
T Consensus       211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hla  248 (262)
T PLN00048        211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLA  248 (262)
T ss_pred             HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhc
Confidence            56899999999999999999999999999999865443

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=97.60  E-value=5.7e-05  Score=69.53  Aligned_cols=38  Identities=26%  Similarity=0.425  Sum_probs=34.3

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      ...|+.|||+|||++++.++.+.+||+|.++++...+.
T Consensus       216 k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hla  253 (267)
T PLN00098        216 RTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLA  253 (267)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhc
Confidence            66899999999999999999999999999999865443

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=97.57  E-value=5.8e-05  Score=68.76  Aligned_cols=37  Identities=32%  Similarity=0.446  Sum_probs=33.9

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFF  196 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~  196 (249)
                      +..|+.|||+||++|++.++.++.||+|.++++...+
T Consensus       198 k~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~Hl  234 (244)
T PLN00097        198 KLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHL  234 (244)
T ss_pred             HHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHh
Confidence            6799999999999999999999999999999986544

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.55  E-value=7.2e-05  Score=70.65  Aligned_cols=38  Identities=29%  Similarity=0.525  Sum_probs=33.8

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      ...|+.|||+||+|+++.++.+.+||++.++++...+.
T Consensus       274 k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hla  311 (324)
T PLN00171        274 KVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLS  311 (324)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhc
Confidence            55799999999999999999999999999999865443

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.52  E-value=8.2e-05  Score=69.15  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=34.3

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      ...|+.|||+||+++++.++.+.+||+|.++++...+.
T Consensus       236 k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hla  273 (286)
T PLN00187        236 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS  273 (286)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            67899999999999999999999999999998866543

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=97.34  E-value=0.00015  Score=64.02  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=26.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCC-chh
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGV-GLV  189 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~-gil  189 (249)
                      ...|+-|||+||||+++.++.|.++|. .++
T Consensus       169 ~~~EL~NGRLAMiai~G~~~qe~l~g~~~~~  199 (202)
T PLN00120        169 RAIELNQGRAAQMGILALMVHEQLGVELPII  199 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCcCC
Confidence            468999999999999999999999995 443

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=97.29  E-value=0.00023  Score=65.03  Aligned_cols=60  Identities=25%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhh-----HHHHHHHHHHHHhhhheeecccchHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS-----NFFCKTLLFVAVVGVLLIRKNEDIET  219 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg-----~~~g~~Ll~vaVaG~llirkneDld~  219 (249)
                      .++|+.|||+||+|+++.++.|+++.-+..+...     .......+-+.++|+++++|..++..
T Consensus        74 r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~ag~~~~~~~~~~l~~iqill~g~~E~~r~~~~~~  138 (246)
T PLN00100         74 QEAELMNGRWAMAATAGILFTDAVGLPKFWEAGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMK  138 (246)
T ss_pred             HHHHhhcchHHHHHHhhhhHHHHhcccchhhcchhhhccchhHHHHHHHHHHHHHhhhccccccc
Confidence            7899999999999999999999964322222111     11112233344689999988877643

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=96.54  E-value=0.0023  Score=57.03  Aligned_cols=28  Identities=36%  Similarity=0.315  Sum_probs=25.2

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCc
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVG  187 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~g  187 (249)
                      +++|+.|||+||+++++.++.|.++.-|
T Consensus        76 r~~ElkhGR~AMlA~~G~~~~~~~~~pG  103 (209)
T PLN00089         76 RESELKHGRAAMLAVAGFIAPDFVRIPG  103 (209)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence            6899999999999999999999977544

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=96.45  E-value=0.0013  Score=60.58  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhh
Q 025671          159 LPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS  193 (249)
Q Consensus       159 ~~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg  193 (249)
                      ++..|+.|||+||++|++.++.- .||+|-++.++
T Consensus       221 lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~  254 (255)
T PLN00170        221 LKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG  254 (255)
T ss_pred             HHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence            37899999999999999888766 79999998875

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=95.38  E-value=0.0045  Score=54.82  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDS  182 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl  182 (249)
                      +++|+.|||+||+++++.++.|.
T Consensus        65 r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         65 RYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             HHHHhhcccHHHHhhccceeecc
Confidence            68999999999999999999996

>PLN02449 ferrochelatase

Probab=93.66  E-value=0.039  Score=54.78  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHh
Q 025671          169 AAMIGFFMAYLVDSLTGVGLVDQ  191 (249)
Q Consensus       169 lAMIGFv~al~vEl~TG~gil~Q  191 (249)
                      +||+||++.++.|++||+|.+++
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~  485 (485)
T PLN02449        463 AAMLAVLLLLVLEVTSGFGNLHQ  485 (485)
T ss_pred             hHHHHHHHHHHHHHHcCCCcCCC
Confidence            99999999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.55
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.3
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.18
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	98.01
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	97.9
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	97.83
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	97.83
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	97.72
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	97.6
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	97.6
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	97.43
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	97.27

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.55  E-value=5.4e-08  Score=86.88  Aligned_cols=73  Identities=30%  Similarity=0.456  Sum_probs=55.7

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhH---h--------hh-----HHHHHHHHHHHHhhhheeecccchHHHHhh
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD---Q--------MS-----NFFCKTLLFVAVVGVLLIRKNEDIETLKKL  223 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~---Q--------lg-----~~~g~~Ll~vaVaG~llirkneDld~lk~L  223 (249)
                      +++|++|||+||+|+++.++.|+++|....+   +        .+     .......+-++++|+++++|..+++..+.+
T Consensus        93 ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~~~~~~  172 (243)
T 3pl9_A           93 RECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRL  172 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTT
T ss_pred             HHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence            8999999999999999999999998743221   0        00     011223445678999999999999888889


Q ss_pred             cccccccchh
Q 025671          224 LEETTFYDKQ  233 (249)
Q Consensus       224 ~~e~tfyDkq  233 (249)
                      |++.- ||+-
T Consensus       173 ~PG~~-FDPL  181 (243)
T 3pl9_A          173 YPGGT-FDPL  181 (243)
T ss_dssp             CCCGG-GCTT
T ss_pred             CCCcc-hhhc
Confidence            99875 8875

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.30  E-value=5.1e-07  Score=79.41  Aligned_cols=38  Identities=29%  Similarity=0.509  Sum_probs=34.7

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      +.+|+.|||+|||||++.++.|++||+++++|+...+.
T Consensus       177 ~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~a  214 (232)
T 2bhw_A          177 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  214 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHH
T ss_pred             HHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            68999999999999999999999999999999876543

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.18  E-value=1.3e-06  Score=78.01  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=34.8

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      +.+|+.|||+|||||++.++.|++||+|.++|+...+.
T Consensus       194 r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hla  231 (243)
T 3pl9_A          194 QLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS  231 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            68999999999999999999999999999999876543

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=98.01  E-value=1.1e-07  Score=84.84  Aligned_cols=31  Identities=39%  Similarity=0.640  Sum_probs=29.2

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD  190 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~  190 (249)
                      +++|++|||+||+|+++.++.|++++.|++.
T Consensus        92 r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~  122 (251)
T 2wsc_4           92 VQAELVNGRWAMLGVAGMLLPEVFTSIGIIN  122 (251)
T ss_dssp             HHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence            7999999999999999999999999988774

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=97.90  E-value=1.2e-06  Score=79.33  Aligned_cols=38  Identities=26%  Similarity=0.414  Sum_probs=31.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      +.+|+.|||+|||||++.++.|++||+++++|+...+.
T Consensus       225 r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~Hla  262 (276)
T 2wsc_3          225 KLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLT  262 (276)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------
T ss_pred             HHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhcc
Confidence            78999999999999999999999999999998865443

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=97.83  E-value=1.3e-06  Score=78.75  Aligned_cols=35  Identities=34%  Similarity=0.539  Sum_probs=32.8

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhh
Q 025671          159 LPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS  193 (249)
Q Consensus       159 ~~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg  193 (249)
                      ++.+|+.|||+|||||++.++.|++||+|+++++.
T Consensus       217 ~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          217 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             STTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             HHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            37899999999999999999999999999998875

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=97.83  E-value=1.1e-07  Score=86.06  Aligned_cols=58  Identities=29%  Similarity=0.433  Sum_probs=41.6

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHh------h--------h--HHHH----HHHHHHHHhhhheeecccch
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQ------M--------S--NFFC----KTLLFVAVVGVLLIRKNEDI  217 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Q------l--------g--~~~g----~~Ll~vaVaG~llirkneDl  217 (249)
                      .++|++|||+||+|+++.++.|++++.|++.+      .        +  .+++    ..++.++++|++++++..|+
T Consensus       100 r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~  177 (276)
T 2wsc_3          100 AYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDW  177 (276)
T ss_dssp             HHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGG
T ss_pred             HHHHhhcccchhhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhccc
Confidence            79999999999999999999999999886621      0        1  0111    11234467888888876653

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=97.72  E-value=2.8e-06  Score=76.60  Aligned_cols=30  Identities=33%  Similarity=0.512  Sum_probs=28.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchh
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLV  189 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil  189 (249)
                      .++|+.|||+||+|+++.++.|++++.|++
T Consensus       103 r~aElkHGR~AMLA~~G~l~~E~l~~~G~~  132 (269)
T 2wsc_2          103 VQAELVHSRWAMLGAAGIFIPEFLTKLGIL  132 (269)
T ss_dssp             HHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred             HHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence            799999999999999999999999987765

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=97.60  E-value=1.9e-05  Score=69.42  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=24.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhC
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTG  185 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG  185 (249)
                      +++|++|||+||+|+++.++.|+++.
T Consensus        62 ReaELkHGR~AMLA~~G~lv~E~l~~   87 (232)
T 2bhw_A           62 RELEVIHSRWAMLGALGSVFPELLSR   87 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccchHHHhhhhhhhHHHhcc
Confidence            79999999999999999999999764

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=97.60  E-value=5.7e-06  Score=73.54  Aligned_cols=36  Identities=25%  Similarity=0.478  Sum_probs=32.4

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHH-HHhCCchhHhhhH
Q 025671          159 LPEAELLNGRAAMIGFFMAYLVD-SLTGVGLVDQMSN  194 (249)
Q Consensus       159 ~~~AEl~NGRlAMIGFv~al~vE-l~TG~gil~Qlg~  194 (249)
                      ++.+|+.|||+|||||++.++.| ++||+|.+++++.
T Consensus       187 ~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~  223 (241)
T 2wsc_1          187 LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT  223 (241)
T ss_dssp             SCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred             HHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence            37899999999999999999999 5899999998754

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=97.43  E-value=4.3e-06  Score=74.32  Aligned_cols=73  Identities=15%  Similarity=0.113  Sum_probs=47.2

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhH-------------hh------hHHHHHHHHHHHHhhhheeecccchHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD-------------QM------SNFFCKTLLFVAVVGVLLIRKNEDIETL  220 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~-------------Ql------g~~~g~~Ll~vaVaG~llirkneDld~l  220 (249)
                      +++|+.|||+||+|+++.++.|+++...+.+             .+      +.......+.+.++|+++.+|..+.+..
T Consensus        84 r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~~~~  163 (241)
T 2wsc_1           84 KESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPE  163 (241)
T ss_dssp             HHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCCSSC
T ss_pred             HHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            7899999999999999999999854321110             00      0111112233456788887776665556


Q ss_pred             Hhhcccccccchh
Q 025671          221 KKLLEETTFYDKQ  233 (249)
Q Consensus       221 k~L~~e~tfyDkq  233 (249)
                      +..|+++ +||+-
T Consensus       164 ~~~yPgg-~fDPl  175 (241)
T 2wsc_1          164 KKKYPGG-AFDPL  175 (241)
T ss_dssp             CSSSCSC-CSCSS
T ss_pred             CCCCCCC-ccccc
Confidence            6778887 78984

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=97.27  E-value=3.1e-05  Score=69.00  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=32.1

Q ss_pred             CchhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhH
Q 025671          159 LPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSN  194 (249)
Q Consensus       159 ~~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~  194 (249)
                      ++..|+.|||| ||||++.++.|.+||++.++++..
T Consensus       200 ~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~  234 (251)
T 2wsc_4          200 AKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ  234 (251)
T ss_dssp             CTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred             HHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence            37899999999 999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.44
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	97.44

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.44  E-value=7.7e-08  Score=80.65  Aligned_cols=38  Identities=26%  Similarity=0.498  Sum_probs=34.7

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC  197 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g  197 (249)
                      +..|+.||||||||+++.++.|++||++.++|+...+.
T Consensus       164 k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~  201 (218)
T d1rwta_         164 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  201 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhc
Confidence            56899999999999999999999999999999876544

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.44  E-value=2.2e-05  Score=65.40  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=24.7

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHhCC
Q 025671          160 PEAELLNGRAAMIGFFMAYLVDSLTGV  186 (249)
Q Consensus       160 ~~AEl~NGRlAMIGFv~al~vEl~TG~  186 (249)
                      +++|+.|||+||+++++.++.|+++.-
T Consensus        49 ReaELKHGR~AMLA~vG~~~~E~~~~~   75 (218)
T d1rwta_          49 RELEVIHCRWAMLGALGCVFPELLARN   75 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhceehHhhhcceeehhhhccC
Confidence            799999999999999999999987643