Citrus Sinensis ID: 025676

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEMDAD
ccccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccEEEEEEEcccccccccccccccEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccEEEEEccccccccccEEEEcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccEEEEccHHHHHHHHHHHHHHHHHHccc
cccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccEEEEEEEEEcccccEccccccccEEEcccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccEccccEEEEEEEEEccEEEEEEEcccccEEEEcEEEEcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccEEEEcHHHHHHHHHHHHHHHHHHcccc
mssigtgydlsvttfspdgrvFQIEYAAkavdnsgtvigikckdgIVMGVEKLIASKmmlpgsnrrihsvhrhsgmavaglAADGRQIVTRAKSEatnyesvygepipvKELAQRVASYVHLCTLYWwlrpfgcgvilggydrdgpqlymiepsgisYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVcdesnrqhqkvPDELLEEAKAAARAALEEMDAD
mssigtgydlsvttfspdGRVFQIEYaakavdnsgtvigikckDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSeatnyesvygepipVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLklsemtcrqGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEMDAD
MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPdelleeakaaaraaleemdad
******GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVC********************************
*****TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKA************
MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA**********
*********LSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALE*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEMDAD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query249 2.2.26 [Sep-21-2011]
O23715249 Proteasome subunit alpha yes no 1.0 1.0 0.903 1e-134
O24362249 Proteasome subunit alpha N/A no 1.0 1.0 0.923 1e-133
Q9LSU0249 Proteasome subunit alpha yes no 1.0 1.0 0.883 1e-133
P90513252 Proteasome subunit alpha N/A no 0.967 0.956 0.655 3e-92
Q27563248 Proteasome subunit alpha yes no 0.991 0.995 0.591 1e-90
P25788255 Proteasome subunit alpha yes no 0.991 0.968 0.637 2e-87
Q58DU5255 Proteasome subunit alpha yes no 0.991 0.968 0.637 2e-87
O70435255 Proteasome subunit alpha yes no 0.991 0.968 0.633 9e-87
P18422255 Proteasome subunit alpha yes no 0.991 0.968 0.633 1e-86
O59770253 Probable proteasome subun yes no 0.959 0.944 0.525 1e-69
>sp|O23715|PSA3_ARATH Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2 Back     alignment and function desciption
 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/249 (90%), Positives = 241/249 (96%)

Query: 1   MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
           MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTV+GIKCKDGIVMGVEKLIASKMML
Sbjct: 1   MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMML 60

Query: 61  PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
           PGSNRRIHSVHRH+GMAVAGLAADGRQIV RAKSEA +YESVYG+ +PVKEL++RVASYV
Sbjct: 61  PGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYV 120

Query: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
           HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKG+QAAKTEIEKL 
Sbjct: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLN 180

Query: 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240
           LSEMTC++GVIEVAKIIY +HDEAKDKAFELEMSW+C+ES R+HQKVPD+LLEEAK AA+
Sbjct: 181 LSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQKVPDDLLEEAKTAAK 240

Query: 241 AALEEMDAD 249
            ALEEMDAD
Sbjct: 241 TALEEMDAD 249
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1
>sp|O24362|PSA3_SPIOL Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSU0|PSA3_ORYSJ Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1 Back     alignment and function description
>sp|P90513|PSA3_ACACA Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1 Back     alignment and function description
>sp|Q27563|PSA3_DICDI Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2 Back     alignment and function description
>sp|P25788|PSA3_HUMAN Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2 Back     alignment and function description
>sp|Q58DU5|PSA3_BOVIN Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3 Back     alignment and function description
>sp|O70435|PSA3_MOUSE Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3 Back     alignment and function description
>sp|P18422|PSA3_RAT Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3 Back     alignment and function description
>sp|O59770|PSA7_SCHPO Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pre10 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
224058900249 predicted protein [Populus trichocarpa] 1.0 1.0 0.943 1e-137
224106660249 predicted protein [Populus trichocarpa] 1.0 1.0 0.943 1e-137
388503392249 unknown [Medicago truncatula] 1.0 1.0 0.915 1e-133
217072000249 unknown [Medicago truncatula] 1.0 1.0 0.915 1e-133
15225839249 proteasome subunit alpha type-3 [Arabido 1.0 1.0 0.903 1e-133
297825981249 hypothetical protein ARALYDRAFT_481580 [ 1.0 1.0 0.903 1e-133
2511592249 multicatalytic endopeptidase complex, pr 1.0 1.0 0.899 1e-131
3914431249 RecName: Full=Proteasome subunit alpha t 1.0 1.0 0.923 1e-131
115440617249 Os01g0811100 [Oryza sativa Japonica Grou 1.0 1.0 0.883 1e-131
224031643249 unknown [Zea mays] gi|414880044|tpg|DAA5 1.0 1.0 0.871 1e-130
>gi|224058900|ref|XP_002299648.1| predicted protein [Populus trichocarpa] gi|118488197|gb|ABK95918.1| unknown [Populus trichocarpa] gi|222846906|gb|EEE84453.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/249 (94%), Positives = 244/249 (97%)

Query: 1   MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
           MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML
Sbjct: 1   MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60

Query: 61  PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
           PGSNRRIH+VHRHSGMAVAGLAADGRQIV RAKSEATNY+SVYGEP+P+KELA RVASYV
Sbjct: 61  PGSNRRIHAVHRHSGMAVAGLAADGRQIVARAKSEATNYQSVYGEPVPIKELADRVASYV 120

Query: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
           HLCTLYWWLRPFGCGVILGGYDRDGPQLYM+EPSGISYRYFGAAIGKG+QAAKTEIEKLK
Sbjct: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLK 180

Query: 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240
           LSEMTCR+GVIEVAKIIY VHDEAKDKAFELEMSWVCDES RQH+KVPD+LLEEAKAAAR
Sbjct: 181 LSEMTCREGVIEVAKIIYKVHDEAKDKAFELEMSWVCDESKRQHEKVPDDLLEEAKAAAR 240

Query: 241 AALEEMDAD 249
            ALEEMDAD
Sbjct: 241 NALEEMDAD 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224106660|ref|XP_002314241.1| predicted protein [Populus trichocarpa] gi|118488569|gb|ABK96097.1| unknown [Populus trichocarpa] gi|222850649|gb|EEE88196.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388503392|gb|AFK39762.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217072000|gb|ACJ84360.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|15225839|ref|NP_180270.1| proteasome subunit alpha type-3 [Arabidopsis thaliana] gi|12644056|sp|O23715.2|PSA3_ARATH RecName: Full=Proteasome subunit alpha type-3; AltName: Full=20S proteasome alpha subunit G-1; AltName: Full=DiDi 17A-2a; AltName: Full=Proteasome component 8; AltName: Full=Proteasome subunit alpha type-7 gi|14030729|gb|AAK53039.1|AF375455_1 At2g27020/T20P8.7 [Arabidopsis thaliana] gi|3421096|gb|AAC32064.1| 20S proteasome subunit PAG1 [Arabidopsis thaliana] gi|3885332|gb|AAC77860.1| 20S proteasome alpha subunit G (PAG1) [Arabidopsis thaliana] gi|21617882|gb|AAM66932.1| 20S proteasome subunit C8 (PAG1/PRC8_ARATH) [Arabidopsis thaliana] gi|21700783|gb|AAM70515.1| At2g27020/T20P8.7 [Arabidopsis thaliana] gi|330252829|gb|AEC07923.1| proteasome subunit alpha type-3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297825981|ref|XP_002880873.1| hypothetical protein ARALYDRAFT_481580 [Arabidopsis lyrata subsp. lyrata] gi|297326712|gb|EFH57132.1| hypothetical protein ARALYDRAFT_481580 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|2511592|emb|CAA74027.1| multicatalytic endopeptidase complex, proteasome component, alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3914431|sp|O24362.1|PSA3_SPIOL RecName: Full=Proteasome subunit alpha type-3; AltName: Full=20S proteasome alpha subunit G; AltName: Full=20S proteasome subunit alpha-7; AltName: Full=Proteasome component C8 gi|2285802|dbj|BAA21651.1| 26S proteasome alpha subunit [Spinacia oleracea] Back     alignment and taxonomy information
>gi|115440617|ref|NP_001044588.1| Os01g0811100 [Oryza sativa Japonica Group] gi|12229919|sp|Q9LSU0.1|PSA3_ORYSJ RecName: Full=Proteasome subunit alpha type-3; AltName: Full=20S proteasome alpha subunit G; AltName: Full=20S proteasome subunit alpha-7 gi|8671500|dbj|BAA96833.1| alpha 7 subunit of 20S proteasome [Oryza sativa Japonica Group] gi|55297486|dbj|BAD68202.1| putative proteasome subunit alpha type 3 [Oryza sativa Japonica Group] gi|55297673|dbj|BAD68244.1| putative proteasome subunit alpha type 3 [Oryza sativa Japonica Group] gi|113534119|dbj|BAF06502.1| Os01g0811100 [Oryza sativa Japonica Group] gi|215737208|dbj|BAG96137.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189257|gb|EEC71684.1| hypothetical protein OsI_04163 [Oryza sativa Indica Group] gi|222619429|gb|EEE55561.1| hypothetical protein OsJ_03826 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|224031643|gb|ACN34897.1| unknown [Zea mays] gi|414880044|tpg|DAA57175.1| TPA: proteasome subunit alpha type [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
TAIR|locus:2059319249 PAG1 "20S proteasome alpha sub 0.915 0.915 0.912 6.6e-113
DICTYBASE|DDB_G0267408248 psmA3 "proteasome subunit alph 0.915 0.919 0.605 1.8e-78
UNIPROTKB|Q5ZLI2255 PSMA3 "Proteasome subunit alph 0.915 0.894 0.663 2.1e-77
ZFIN|ZDB-GENE-050913-120255 psma3 "proteasome (prosome, ma 0.915 0.894 0.655 2.1e-77
UNIPROTKB|Q58DU5255 PSMA3 "Proteasome subunit alph 0.915 0.894 0.659 9e-77
UNIPROTKB|P25788255 PSMA3 "Proteasome subunit alph 0.915 0.894 0.659 1.1e-76
UNIPROTKB|F1SSL6255 PSMA3 "Proteasome subunit alph 0.915 0.894 0.655 3.9e-76
MGI|MGI:104883255 Psma3 "proteasome (prosome, ma 0.915 0.894 0.655 3.9e-76
RGD|61844255 Psma3 "proteasome (prosome, ma 0.915 0.894 0.655 3.9e-76
UNIPROTKB|E2RKR4255 PSMA3 "Proteasome subunit alph 0.915 0.894 0.655 5e-76
TAIR|locus:2059319 PAG1 "20S proteasome alpha subunit G1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
 Identities = 208/228 (91%), Positives = 222/228 (97%)

Query:     1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
             MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTV+GIKCKDGIVMGVEKLIASKMML
Sbjct:     1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMML 60

Query:    61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
             PGSNRRIHSVHRH+GMAVAGLAADGRQIV RAKSEA +YESVYG+ +PVKEL++RVASYV
Sbjct:    61 PGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYV 120

Query:   121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
             HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKG+QAAKTEIEKL 
Sbjct:   121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLN 180

Query:   181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 228
             LSEMTC++GVIEVAKIIY +HDEAKDKAFELEMSW+C+ES R+HQKVP
Sbjct:   181 LSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQKVP 228
GO:0004175 "endopeptidase activity" evidence=IEA
GO:0004298 "threonine-type endopeptidase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005839 "proteasome core complex" evidence=IEA;TAS
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;RCA;TAS
GO:0008233 "peptidase activity" evidence=ISS
GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA
GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0009409 "response to cold" evidence=IEP
GO:0005773 "vacuole" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0000502 "proteasome complex" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
DICTYBASE|DDB_G0267408 psmA3 "proteasome subunit alpha type 3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLI2 PSMA3 "Proteasome subunit alpha type" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050913-120 psma3 "proteasome (prosome, macropain) subunit, alpha type, 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DU5 PSMA3 "Proteasome subunit alpha type-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P25788 PSMA3 "Proteasome subunit alpha type-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSL6 PSMA3 "Proteasome subunit alpha type" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:104883 Psma3 "proteasome (prosome, macropain) subunit, alpha type 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|61844 Psma3 "proteasome (prosome, macropain) subunit, alpha type 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKR4 PSMA3 "Proteasome subunit alpha type" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q58DU5PSA3_BOVIN3, ., 4, ., 2, 5, ., 10.63700.99190.9686yesno
A6VIP0PSA_METM73, ., 4, ., 2, 5, ., 10.35040.92360.8880yesno
A6URN9PSA_METVS3, ., 4, ., 2, 5, ., 10.36270.84730.8146yesno
Q27563PSA3_DICDI3, ., 4, ., 2, 5, ., 10.59100.99190.9959yesno
O29760PSA_ARCFU3, ., 4, ., 2, 5, ., 10.35110.89550.9065yesno
A4FZT6PSA_METM53, ., 4, ., 2, 5, ., 10.35040.92360.8880yesno
P25788PSA3_HUMAN3, ., 4, ., 2, 5, ., 10.63700.99190.9686yesno
A9A846PSA_METM63, ., 4, ., 2, 5, ., 10.34180.92360.8880yesno
P90513PSA3_ACACA3, ., 4, ., 2, 5, ., 10.65560.96780.9563N/Ano
Q8PTU1PSA_METMA3, ., 4, ., 2, 5, ., 10.34660.89950.8995yesno
O26782PSA_METTH3, ., 4, ., 2, 5, ., 10.37050.89150.8951yesno
O24362PSA3_SPIOL3, ., 4, ., 2, 5, ., 10.92361.01.0N/Ano
Q8TYB7PSA_METKA3, ., 4, ., 2, 5, ., 10.36680.91160.9227yesno
P18422PSA3_RAT3, ., 4, ., 2, 5, ., 10.63300.99190.9686yesno
Q469M6PSA_METBF3, ., 4, ., 2, 5, ., 10.35650.87950.8795yesno
Q60177PSA_METJA3, ., 4, ., 2, 5, ., 10.33330.89150.8505yesno
Q9LSU0PSA3_ORYSJ3, ., 4, ., 2, 5, ., 10.88351.01.0yesno
C6A459PSA_THESM3, ., 4, ., 2, 5, ., 10.35190.90360.8653yesno
O23715PSA3_ARATH3, ., 4, ., 2, 5, ., 10.90361.01.0yesno
O59770PSA7_SCHPO3, ., 4, ., 2, 5, ., 10.5250.95980.9446yesno
P21242PSA7_YEAST3, ., 4, ., 2, 5, ., 10.51460.94370.8159yesno
Q8TPX5PSA_METAC3, ., 4, ., 2, 5, ., 10.35110.89950.9068yesno
Q09583PSA3_CAEEL3, ., 4, ., 2, 5, ., 10.4720.99590.992yesno
Q6M0L9PSA_METMP3, ., 4, ., 2, 5, ., 10.34610.92360.8880yesno
O70435PSA3_MOUSE3, ., 4, ., 2, 5, ., 10.63300.99190.9686yesno
Q9V5C6PSA3_DROME3, ., 4, ., 2, 5, ., 10.5240.99590.9802yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.25.10.993
3rd Layer3.4.250.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
cd03751212 cd03751, proteasome_alpha_type_3, proteasome_alpha 1e-149
cd01911209 cd01911, proteasome_alpha, proteasome alpha subuni 1e-108
COG0638236 COG0638, PRE1, 20S proteasome, alpha and beta subu 3e-60
pfam00227188 pfam00227, Proteasome, Proteasome subunit 4e-60
PRK03996241 PRK03996, PRK03996, proteasome subunit alpha; Prov 1e-58
TIGR03633224 TIGR03633, arc_protsome_A, proteasome endopeptidas 6e-57
cd01906182 cd01906, proteasome_protease_HslV, proteasome_prot 2e-55
cd03756211 cd03756, proteasome_alpha_archeal, proteasome_alph 1e-53
cd03753213 cd03753, proteasome_alpha_type_5, proteasome_alpha 2e-53
cd03749211 cd03749, proteasome_alpha_type_1, proteasome_alpha 6e-51
cd03750227 cd03750, proteasome_alpha_type_2, proteasome_alpha 4e-50
PTZ00246253 PTZ00246, PTZ00246, proteasome subunit alpha; Prov 7e-45
cd03754215 cd03754, proteasome_alpha_type_6, proteasome_alpha 8e-45
cd03755207 cd03755, proteasome_alpha_type_7, proteasome_alpha 6e-43
cd03752213 cd03752, proteasome_alpha_type_4, proteasome_alpha 6e-43
cd01901164 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term 9e-41
cd03764188 cd03764, proteasome_beta_archeal, Archeal proteaso 7e-20
cd01912189 cd01912, proteasome_beta, proteasome beta subunit 2e-18
TIGR03634185 TIGR03634, arc_protsome_B, proteasome endopeptidas 2e-18
pfam1058423 pfam10584, Proteasome_A_N, Proteasome subunit A N- 8e-11
smart0094823 smart00948, Proteasome_A_N, Proteasome subunit A N 7e-10
cd03763189 cd03763, proteasome_beta_type_7, proteasome beta t 7e-10
cd03762188 cd03762, proteasome_beta_type_6, proteasome beta t 2e-06
cd03757212 cd03757, proteasome_beta_type_1, proteasome beta t 5e-06
cd03758193 cd03758, proteasome_beta_type_2, proteasome beta t 6e-06
>gnl|CDD|239720 cd03751, proteasome_alpha_type_3, proteasome_alpha_type_3 Back     alignment and domain information 
 Score =  415 bits (1068), Expect = e-149
 Identities = 154/212 (72%), Positives = 177/212 (83%)

Query: 5   GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSN 64
           GTGYDLS +TFSPDGRVFQ+EYA KAV+NSGT IGI+CKDG+V+ VEKL+ SK+  PGSN
Sbjct: 1   GTGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSN 60

Query: 65  RRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCT 124
           +RI +V RH G+AVAGL ADGR +V+RA+ EA NY   YG PIPVK LA RVA Y+H  T
Sbjct: 61  KRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYT 120

Query: 125 LYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 184
           LY  +RPFGC V+LGGYD DGPQLYMIEPSG+SY YFG AIGKG+QAAKTE+EKLK SE+
Sbjct: 121 LYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSEL 180

Query: 185 TCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216
           TCR+ V E AKIIY VHDE KDKAFELE+SWV
Sbjct: 181 TCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212
>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit Back     alignment and domain information
>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit Back     alignment and domain information
>gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex, archaeal, alpha subunit Back     alignment and domain information
>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV Back     alignment and domain information
>gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal Back     alignment and domain information
>gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5 Back     alignment and domain information
>gnl|CDD|239718 cd03749, proteasome_alpha_type_1, proteasome_alpha_type_1 Back     alignment and domain information
>gnl|CDD|239719 cd03750, proteasome_alpha_type_2, proteasome_alpha_type_2 Back     alignment and domain information
>gnl|CDD|173491 PTZ00246, PTZ00246, proteasome subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|239723 cd03754, proteasome_alpha_type_6, proteasome_alpha_type_6 Back     alignment and domain information
>gnl|CDD|239724 cd03755, proteasome_alpha_type_7, proteasome_alpha_type_7 Back     alignment and domain information
>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4 Back     alignment and domain information
>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid Back     alignment and domain information
>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit Back     alignment and domain information
>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit Back     alignment and domain information
>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit Back     alignment and domain information
>gnl|CDD|204518 pfam10584, Proteasome_A_N, Proteasome subunit A N-terminal signature Back     alignment and domain information
>gnl|CDD|198016 smart00948, Proteasome_A_N, Proteasome subunit A N-terminal signature Add an annotation Back     alignment and domain information
>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit Back     alignment and domain information
>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit Back     alignment and domain information
>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit Back     alignment and domain information
>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 249
KOG0184254 consensus 20S proteasome, regulatory subunit alpha 100.0
PRK03996241 proteasome subunit alpha; Provisional 100.0
PTZ00246253 proteasome subunit alpha; Provisional 100.0
cd03750227 proteasome_alpha_type_2 proteasome_alpha_type_2. T 100.0
KOG0176241 consensus 20S proteasome, regulatory subunit alpha 100.0
cd03751212 proteasome_alpha_type_3 proteasome_alpha_type_3. T 100.0
cd03752213 proteasome_alpha_type_4 proteasome_alpha_type_4. T 100.0
TIGR03633224 arc_protsome_A proteasome endopeptidase complex, a 100.0
cd03755207 proteasome_alpha_type_7 proteasome_alpha_type_7. T 100.0
cd03749211 proteasome_alpha_type_1 proteasome_alpha_type_1. T 100.0
COG0638236 PRE1 20S proteasome, alpha and beta subunits [Post 100.0
cd03756211 proteasome_alpha_archeal proteasome_alpha_archeal. 100.0
cd03754215 proteasome_alpha_type_6 proteasome_alpha_type_6. T 100.0
KOG0183249 consensus 20S proteasome, regulatory subunit alpha 100.0
cd03753213 proteasome_alpha_type_5 proteasome_alpha_type_5. T 100.0
cd01911209 proteasome_alpha proteasome alpha subunit. The 20S 100.0
KOG0178249 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0181233 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0182246 consensus 20S proteasome, regulatory subunit alpha 100.0
KOG0863264 consensus 20S proteasome, regulatory subunit alpha 100.0
TIGR03691228 20S_bact_alpha proteasome, alpha subunit, bacteria 100.0
TIGR03690219 20S_bact_beta proteasome, beta subunit, bacterial 100.0
PTZ00488247 Proteasome subunit beta type-5; Provisional 100.0
cd03760197 proteasome_beta_type_4 proteasome beta type-4 subu 100.0
cd03761188 proteasome_beta_type_5 proteasome beta type-5 subu 100.0
cd03758193 proteasome_beta_type_2 proteasome beta type-2 subu 100.0
cd03759195 proteasome_beta_type_3 proteasome beta type-3 subu 100.0
cd03765236 proteasome_beta_bacterial Bacterial proteasome, be 100.0
TIGR03634185 arc_protsome_B proteasome endopeptidase complex, a 100.0
cd03757212 proteasome_beta_type_1 proteasome beta type-1 subu 100.0
cd03764188 proteasome_beta_archeal Archeal proteasome, beta s 100.0
cd03763189 proteasome_beta_type_7 proteasome beta type-7 subu 100.0
PF00227190 Proteasome: Proteasome subunit; InterPro: IPR00135 100.0
cd03762188 proteasome_beta_type_6 proteasome beta type-6 subu 100.0
cd01912189 proteasome_beta proteasome beta subunit. The 20S p 100.0
cd01906182 proteasome_protease_HslV proteasome_protease_HslV. 100.0
KOG0177200 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0173271 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0179235 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0174224 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0175285 consensus 20S proteasome, regulatory subunit beta 100.0
KOG0185256 consensus 20S proteasome, regulatory subunit beta 100.0
cd01901164 Ntn_hydrolase The Ntn hydrolases (N-terminal nucle 99.97
PRK05456172 ATP-dependent protease subunit HslV; Provisional 99.97
cd01913171 protease_HslV Protease HslV and the ATPase/chapero 99.97
TIGR03692171 ATP_dep_HslV ATP-dependent protease HslVU, peptida 99.96
KOG0180204 consensus 20S proteasome, regulatory subunit beta 99.95
COG3484255 Predicted proteasome-type protease [Posttranslatio 99.5
PF1058423 Proteasome_A_N: Proteasome subunit A N-terminal si 99.49
COG5405178 HslV ATP-dependent protease HslVU (ClpYQ), peptida 99.28
PF09894194 DUF2121: Uncharacterized protein conserved in arch 96.83
COG4079293 Uncharacterized protein conserved in archaea [Func 95.04
KOG3361157 consensus Iron binding protein involved in Fe-S cl 80.75
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-65  Score=412.70  Aligned_cols=247  Identities=69%  Similarity=1.078  Sum_probs=243.6

Q ss_pred             CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEec
Q 025676            1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAG   80 (249)
Q Consensus         1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG   80 (249)
                      ||||.++||.+.++|||+||+||+|||+||+.+|+|+|||+|+||||+++||.++++++.+....|||.|++||+|+++|
T Consensus         1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaG   80 (254)
T KOG0184|consen    1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAG   80 (254)
T ss_pred             CCcccccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeee
Q 025676           81 LAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY  160 (249)
Q Consensus        81 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~  160 (249)
                      +.+|.+.+.+++|.++.+|+.+|+.++|...++.+++++.|.||+++..|||||+.++++||++||+||.++|+|.++.+
T Consensus        81 l~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y  160 (254)
T KOG0184|consen   81 LIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGY  160 (254)
T ss_pred             cccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHH
Q 025676          161 FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR  240 (249)
Q Consensus       161 ~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~  240 (249)
                      +++|+|.|.+.+++.|||....+|+.+|+++.+.+.|+.+++...++.|++||+|+..++++.++.+|.|.+++.-..+.
T Consensus       161 ~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a~  240 (254)
T KOG0184|consen  161 KGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYAK  240 (254)
T ss_pred             eeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHHHH
Confidence            99999999999999999998889999999999999999999998999999999999999999999999999999999999


Q ss_pred             Hhhhhcc
Q 025676          241 AALEEMD  247 (249)
Q Consensus       241 ~~~~~~~  247 (249)
                      .++++.|
T Consensus       241 ~s~~~~d  247 (254)
T KOG0184|consen  241 ASLDEED  247 (254)
T ss_pred             hhhcccc
Confidence            9999998

>PRK03996 proteasome subunit alpha; Provisional Back     alignment and domain information
>PTZ00246 proteasome subunit alpha; Provisional Back     alignment and domain information
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2 Back     alignment and domain information
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3 Back     alignment and domain information
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4 Back     alignment and domain information
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit Back     alignment and domain information
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7 Back     alignment and domain information
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1 Back     alignment and domain information
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal Back     alignment and domain information
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6 Back     alignment and domain information
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5 Back     alignment and domain information
>cd01911 proteasome_alpha proteasome alpha subunit Back     alignment and domain information
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type Back     alignment and domain information
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type Back     alignment and domain information
>PTZ00488 Proteasome subunit beta type-5; Provisional Back     alignment and domain information
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit Back     alignment and domain information
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit Back     alignment and domain information
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit Back     alignment and domain information
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit Back     alignment and domain information
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit Back     alignment and domain information
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit Back     alignment and domain information
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit Back     alignment and domain information
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit Back     alignment and domain information
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit Back     alignment and domain information
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins Back     alignment and domain information
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit Back     alignment and domain information
>cd01912 proteasome_beta proteasome beta subunit Back     alignment and domain information
>cd01906 proteasome_protease_HslV proteasome_protease_HslV Back     alignment and domain information
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid Back     alignment and domain information
>PRK05456 ATP-dependent protease subunit HslV; Provisional Back     alignment and domain information
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome Back     alignment and domain information
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit Back     alignment and domain information
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3 Back     alignment and domain information
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>COG4079 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
1iru_G254 Crystal Structure Of The Mammalian 20s Proteasome A 3e-84
3unb_F255 Mouse Constitutive 20s Proteasome In Complex With P 3e-84
1z7q_G288 Crystal Structure Of The 20s Proteasome From Yeast 7e-64
1g0u_F248 A Gated Channel Into The Proteasome Core Particle L 1e-63
1fnt_G287 Crystal Structure Of The 20s Proteasome From Yeast 3e-63
1ryp_G244 Crystal Structure Of The 20s Proteasome From Yeast 1e-61
3oeu_F242 Structure Of Yeast 20s Open-Gate Proteasome With Co 2e-60
1g0u_D241 A Gated Channel Into The Proteasome Core Particle L 2e-34
1j2p_A246 Alpha-Ring From The Proteasome From Archaeoglobus F 5e-34
1j2q_A237 20s Proteasome In Complex With Calpain-inhibitor I 6e-34
3h4p_A264 Proteasome 20s Core Particle From Methanocaldococcu 2e-33
1vsy_E250 Proteasome Activator Complex Length = 250 3e-33
2z5c_C262 Crystal Structure Of A Novel Chaperone Complex For 3e-33
4g4s_E261 Structure Of Proteasome-Pba1-Pba2 Complex Length = 3e-33
1fnt_E260 Crystal Structure Of The 20s Proteasome From Yeast 3e-33
1ryp_E242 Crystal Structure Of The 20s Proteasome From Yeast 2e-32
3unb_D241 Mouse Constitutive 20s Proteasome In Complex With P 1e-30
1iru_E241 Crystal Structure Of The Mammalian 20s Proteasome A 2e-30
3une_C248 Mouse Constitutive 20s Proteasome Length = 248 2e-28
1iru_B233 Crystal Structure Of The Mammalian 20s Proteasome A 2e-28
3unb_A234 Mouse Constitutive 20s Proteasome In Complex With P 2e-28
1iru_D248 Crystal Structure Of The Mammalian 20s Proteasome A 3e-28
3unb_C248 Mouse Constitutive 20s Proteasome In Complex With P 8e-28
3jrm_A227 Crystal Structure Of Archaeal 20s Proteasome In Com 1e-27
1pma_A233 Proteasome From Thermoplasma Acidophilum Length = 2 1e-27
2ku1_A237 Dynamic Regulation Of Archaeal Proteasome Gate Open 1e-27
1g0u_B245 A Gated Channel Into The Proteasome Core Particle L 3e-27
1z7q_C258 Crystal Structure Of The 20s Proteasome From Yeast 3e-27
1ryp_C244 Crystal Structure Of The 20s Proteasome From Yeast 3e-27
1yar_A233 Structure Of Archeabacterial 20s Proteasome Mutant 8e-27
1yau_A233 Structure Of Archeabacterial 20s Proteasome- Pa26 C 2e-26
3oeu_B235 Structure Of Yeast 20s Open-Gate Proteasome With Co 3e-26
2ku2_A237 Dynamic Regulation Of Archaeal Proteasome Gate Open 3e-26
1ryp_B250 Crystal Structure Of The 20s Proteasome From Yeast 1e-25
1vsy_C232 Proteasome Activator Complex Length = 232 5e-25
1iru_A246 Crystal Structure Of The Mammalian 20s Proteasome A 7e-25
3unb_G246 Mouse Constitutive 20s Proteasome In Complex With P 1e-24
3unb_E263 Mouse Constitutive 20s Proteasome In Complex With P 3e-24
1iru_F263 Crystal Structure Of The Mammalian 20s Proteasome A 4e-24
1g0u_C243 A Gated Channel Into The Proteasome Core Particle L 8e-24
1fnt_D254 Crystal Structure Of The 20s Proteasome From Yeast 8e-24
1ryp_D241 Crystal Structure Of The 20s Proteasome From Yeast 1e-23
3unb_B261 Mouse Constitutive 20s Proteasome In Complex With P 5e-22
1iru_C261 Crystal Structure Of The Mammalian 20s Proteasome A 1e-21
1vsy_B231 Proteasome Activator Complex Length = 231 3e-20
1fnt_F234 Crystal Structure Of The 20s Proteasome From Yeast 7e-20
4g4s_F235 Structure Of Proteasome-Pba1-Pba2 Complex Length = 7e-20
1ryp_F233 Crystal Structure Of The 20s Proteasome From Yeast 7e-20
1ryp_A243 Crystal Structure Of The 20s Proteasome From Yeast 2e-19
1g0u_E234 A Gated Channel Into The Proteasome Core Particle L 2e-19
3sdi_E233 Structure Of Yeast 20s Open-Gate Proteasome With Co 2e-19
1g0u_G252 A Gated Channel Into The Proteasome Core Particle L 7e-19
1vsy_D227 Proteasome Activator Complex Length = 227 5e-18
3h4p_a219 Proteasome 20s Core Particle From Methanocaldococcu 6e-08
1ya7_H217 Implications For Interactions Of Proteasome With Pa 1e-07
1pma_B211 Proteasome From Thermoplasma Acidophilum Length = 2 1e-07
1j2q_H202 20s Proteasome In Complex With Calpain-inhibitor I 1e-07
3c91_H203 Thermoplasma Acidophilum 20s Proteasome With An Ope 2e-07
3unf_H234 Mouse 20s Immunoproteasome In Complex With Pr-957 L 9e-07
3unb_H234 Mouse Constitutive 20s Proteasome In Complex With P 2e-06
1iru_I234 Crystal Structure Of The Mammalian 20s Proteasome A 3e-06
1ryp_K198 Crystal Structure Of The 20s Proteasome From Yeast 2e-04
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 254 Back     alignment and structure 
Iteration: 1

 Score =  308 bits (788), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 150/228 (65%), Positives = 178/228 (78%), Gaps = 1/228 (0%)
Query: 2   SSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP 61
           SSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+   
Sbjct: 1   SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE 60
Query: 62  GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVH 121
           GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH
Sbjct: 61  GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVH 120
Query: 122 LCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
             TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL+
Sbjct: 121 AYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 180
Query: 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 228
           + EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP
Sbjct: 181 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVP 228
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 255 Back     alignment and structure
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 288 Back     alignment and structure
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle Length = 248 Back     alignment and structure
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 287 Back     alignment and structure
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 244 Back     alignment and structure
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound 24 Length = 242 Back     alignment and structure
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle Length = 241 Back     alignment and structure
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus Length = 246 Back     alignment and structure
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 237 Back     alignment and structure
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264 Back     alignment and structure
>pdb|1VSY|E Chain E, Proteasome Activator Complex Length = 250 Back     alignment and structure
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast 20s Proteasome Assembly Length = 262 Back     alignment and structure
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex Length = 261 Back     alignment and structure
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 260 Back     alignment and structure
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 242 Back     alignment and structure
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 241 Back     alignment and structure
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 241 Back     alignment and structure
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome Length = 248 Back     alignment and structure
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 233 Back     alignment and structure
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234 Back     alignment and structure
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 248 Back     alignment and structure
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 248 Back     alignment and structure
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex With Mutated P26 Activator Length = 227 Back     alignment and structure
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum Length = 233 Back     alignment and structure
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237 Back     alignment and structure
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle Length = 245 Back     alignment and structure
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 258 Back     alignment and structure
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 244 Back     alignment and structure
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s- Pa26 Complex Length = 233 Back     alignment and structure
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex Length = 233 Back     alignment and structure
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound 24 Length = 235 Back     alignment and structure
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237 Back     alignment and structure
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 250 Back     alignment and structure
>pdb|1VSY|C Chain C, Proteasome Activator Complex Length = 232 Back     alignment and structure
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 246 Back     alignment and structure
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 246 Back     alignment and structure
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 263 Back     alignment and structure
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 263 Back     alignment and structure
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle Length = 243 Back     alignment and structure
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 254 Back     alignment and structure
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 241 Back     alignment and structure
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 261 Back     alignment and structure
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 261 Back     alignment and structure
>pdb|1VSY|B Chain B, Proteasome Activator Complex Length = 231 Back     alignment and structure
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 234 Back     alignment and structure
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex Length = 235 Back     alignment and structure
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 233 Back     alignment and structure
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 243 Back     alignment and structure
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle Length = 234 Back     alignment and structure
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound 20 Length = 233 Back     alignment and structure
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle Length = 252 Back     alignment and structure
>pdb|1VSY|D Chain D, Proteasome Activator Complex Length = 227 Back     alignment and structure
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219 Back     alignment and structure
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217 Back     alignment and structure
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211 Back     alignment and structure
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202 Back     alignment and structure
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203 Back     alignment and structure
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 234 Back     alignment and structure
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234 Back     alignment and structure
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 234 Back     alignment and structure
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 198 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
3nzj_F288 Proteasome component C1; ubiquitin, protein degrad 1e-130
1iru_G254 20S proteasome; cell cycle, immune response, prote 1e-127
1ryp_G244 20S proteasome; multicatalytic proteinase, protein 1e-127
1iru_E241 20S proteasome; cell cycle, immune response, prote 1e-121
1j2p_A246 Alpha-ring, proteasome alpha subunit; hydrolase; 2 1e-120
1iru_A246 20S proteasome; cell cycle, immune response, prote 1e-118
3h4p_A264 Proteasome subunit alpha; core particle, cytoplasm 1e-118
1iru_B233 20S proteasome; cell cycle, immune response, prote 1e-118
1ryp_B250 20S proteasome; multicatalytic proteinase, protein 1e-117
1yar_A233 Proteasome alpha subunit; proteasome 20S, PA26 pro 1e-116
1iru_C261 20S proteasome; cell cycle, immune response, prote 1e-111
1ryp_C244 20S proteasome; multicatalytic proteinase, protein 1e-111
1ryp_F233 20S proteasome; multicatalytic proteinase, protein 1e-110
1iru_F263 20S proteasome; cell cycle, immune response, prote 1e-109
1ryp_E242 20S proteasome; multicatalytic proteinase, protein 1e-109
1iru_D248 20S proteasome; cell cycle, immune response, prote 1e-105
1ryp_A243 20S proteasome; multicatalytic proteinase, protein 1e-103
1ryp_D241 20S proteasome; multicatalytic proteinase, protein 1e-99
3nzj_H261 Proteasome component PUP1; ubiquitin, protein degr 8e-35
3unf_H234 Proteasome subunit beta type-10; antigen presentat 3e-33
1q5q_A259 Proteasome alpha-type subunit 1; proteasome assemb 4e-33
1ryp_I222 20S proteasome; multicatalytic proteinase, protein 6e-33
1iru_I234 20S proteasome; cell cycle, immune response, prote 7e-32
3mi0_A248 Proteasome subunit alpha; enzyme inhibitors, lacto 8e-31
1yar_H217 Proteasome beta subunit; proteasome 20S, PA26 prot 2e-30
1iru_L204 20S proteasome; cell cycle, immune response, prote 5e-25
3nzj_K287 Proteasome component PRE2; ubiquitin, protein degr 2e-24
1q5r_H294 Proteasome beta-type subunit 1; proteasome assembl 9e-24
1j2q_H202 Proteasome beta subunit; ubiquitin, CP, hydrolase; 1e-23
1ryp_L212 20S proteasome; multicatalytic proteinase, protein 2e-23
1q5q_H235 Proteasome beta-type subunit 1; proteasome assembl 5e-23
2jay_A291 Proteasome; hydrolase; 1.99A {Mycobacterium tuberc 3e-22
3unf_N199 Proteasome subunit beta type-9; antigen presentati 9e-22
3unf_N199 Proteasome subunit beta type-9; antigen presentati 3e-21
1iru_H205 20S proteasome; cell cycle, immune response, prote 5e-21
1ryp_K198 20S proteasome; multicatalytic proteinase, protein 3e-20
1iru_J205 20S proteasome; cell cycle, immune response, prote 5e-19
1iru_K201 20S proteasome; cell cycle, immune response, prote 6e-19
1iru_N219 20S proteasome; cell cycle, immune response, prote 6e-19
1iru_M213 20S proteasome; cell cycle, immune response, prote 7e-19
1ryp_H205 20S proteasome; multicatalytic proteinase, protein 1e-18
1ryp_M222 20S proteasome; multicatalytic proteinase, protein 3e-18
1ryp_N233 20S proteasome; multicatalytic proteinase, protein 1e-17
1g0u_M266 Proteasome component PRE4; ubiquitin, degradation, 2e-17
1ryp_J204 20S proteasome; multicatalytic proteinase, protein 4e-16
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288 Back     alignment and structure
 Score =  367 bits (945), Expect = e-130
 Identities = 125/253 (49%), Positives = 165/253 (65%), Gaps = 4/253 (1%)

Query: 1   MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
           M+SIGTGYDLS + FSPDGR FQ+EYA KAV+N  T IGIKC DG+V  VEKLI SK+++
Sbjct: 1   MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLV 60

Query: 61  PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
           P  N +I  V RH G   +GL  DGR +V R + EA +++ +Y  PIP+   A R+  YV
Sbjct: 61  PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 120

Query: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL- 179
              TLY  +RPFG   I GG D++G  LYM+EPSG  + Y GAA GKGRQ+AK E+EKL 
Sbjct: 121 QAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLV 180

Query: 180 --KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVC-DESNRQHQKVPDELLEEAK 236
                 ++ R+ V + AKIIY  H++ K+K FELE+SW    E+N  H+ V  +LL+EA 
Sbjct: 181 DHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI 240

Query: 237 AAARAALEEMDAD 249
             A+  +   D +
Sbjct: 241 DFAQKEINGDDDE 253
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254 Back     alignment and structure
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244 Back     alignment and structure
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241 Back     alignment and structure
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246 Back     alignment and structure
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Length = 246 Back     alignment and structure
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264 Back     alignment and structure
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233 Back     alignment and structure
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250 Back     alignment and structure
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233 Back     alignment and structure
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261 Back     alignment and structure
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244 Back     alignment and structure
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233 Back     alignment and structure
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263 Back     alignment and structure
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242 Back     alignment and structure
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248 Back     alignment and structure
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243 Back     alignment and structure
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Length = 241 Back     alignment and structure
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261 Back     alignment and structure
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234 Back     alignment and structure
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259 Back     alignment and structure
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222 Back     alignment and structure
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234 Back     alignment and structure
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248 Back     alignment and structure
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 Back     alignment and structure
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204 Back     alignment and structure
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287 Back     alignment and structure
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294 Back     alignment and structure
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202 Back     alignment and structure
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212 Back     alignment and structure
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235 Back     alignment and structure
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291 Back     alignment and structure
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199 Back     alignment and structure
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205 Back     alignment and structure
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198 Back     alignment and structure
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205 Back     alignment and structure
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201 Back     alignment and structure
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219 Back     alignment and structure
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213 Back     alignment and structure
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205 Back     alignment and structure
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222 Back     alignment and structure
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233 Back     alignment and structure
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266 Back     alignment and structure
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
3nzj_F288 Proteasome component C1; ubiquitin, protein degrad 100.0
1iru_G254 20S proteasome; cell cycle, immune response, prote 100.0
3h4p_A264 Proteasome subunit alpha; core particle, cytoplasm 100.0
1ryp_G244 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_A243 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_A246 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_C244 20S proteasome; multicatalytic proteinase, protein 100.0
1yar_A233 Proteasome alpha subunit; proteasome 20S, PA26 pro 100.0
1j2p_A246 Alpha-ring, proteasome alpha subunit; hydrolase; 2 100.0
1iru_C261 20S proteasome; cell cycle, immune response, prote 100.0
1iru_B233 20S proteasome; cell cycle, immune response, prote 100.0
1iru_E241 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_D241 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_E242 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_B250 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_D248 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_F233 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_F263 20S proteasome; cell cycle, immune response, prote 100.0
1q5q_A259 Proteasome alpha-type subunit 1; proteasome assemb 100.0
3mi0_A248 Proteasome subunit alpha; enzyme inhibitors, lacto 100.0
1yar_H217 Proteasome beta subunit; proteasome 20S, PA26 prot 100.0
3h4p_a219 Proteasome subunit beta; core particle, cytoplasm, 100.0
1j2q_H202 Proteasome beta subunit; ubiquitin, CP, hydrolase; 100.0
3nzj_K287 Proteasome component PRE2; ubiquitin, protein degr 100.0
1q5r_H294 Proteasome beta-type subunit 1; proteasome assembl 100.0
1ryp_L212 20S proteasome; multicatalytic proteinase, protein 100.0
2jay_A291 Proteasome; hydrolase; 1.99A {Mycobacterium tuberc 100.0
1iru_L204 20S proteasome; cell cycle, immune response, prote 100.0
1iru_H205 20S proteasome; cell cycle, immune response, prote 100.0
1iru_N219 20S proteasome; cell cycle, immune response, prote 100.0
1q5q_H235 Proteasome beta-type subunit 1; proteasome assembl 100.0
1ryp_N233 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_H205 20S proteasome; multicatalytic proteinase, protein 100.0
1iru_M213 20S proteasome; cell cycle, immune response, prote 100.0
3nzj_H261 Proteasome component PUP1; ubiquitin, protein degr 100.0
1ryp_K198 20S proteasome; multicatalytic proteinase, protein 100.0
3unf_H234 Proteasome subunit beta type-10; antigen presentat 100.0
1g0u_M266 Proteasome component PRE4; ubiquitin, degradation, 100.0
1iru_J205 20S proteasome; cell cycle, immune response, prote 100.0
1ryp_J204 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_M222 20S proteasome; multicatalytic proteinase, protein 100.0
1ryp_I222 20S proteasome; multicatalytic proteinase, protein 100.0
3unf_N199 Proteasome subunit beta type-9; antigen presentati 100.0
1iru_I234 20S proteasome; cell cycle, immune response, prote 100.0
1iru_K201 20S proteasome; cell cycle, immune response, prote 100.0
2z3b_A180 ATP-dependent protease HSLV; N-terminal nucleophIl 100.0
1m4y_A171 ATP-dependent protease HSLV; N-terminal catalytic 100.0
1g3k_A174 ATP-dependent protease HSLV; hydrolase; 1.90A {Hae 100.0
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F* Back     alignment and structure
Probab=100.00  E-value=3.5e-67  Score=458.94  Aligned_cols=248  Identities=50%  Similarity=0.852  Sum_probs=234.5

Q ss_pred             CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEec
Q 025676            1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAG   80 (249)
Q Consensus         1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG   80 (249)
                      |||+.++||+++|+|||+|||+|||||++|+++|+|+|||+++||||||+|+|.++++++.++.+|||+|++||+|+++|
T Consensus         1 m~~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG   80 (288)
T 3nzj_F            1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSG   80 (288)
T ss_dssp             ----CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEE
T ss_pred             CCCCcCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999887789999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeee
Q 025676           81 LAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY  160 (249)
Q Consensus        81 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~  160 (249)
                      ..+|++.|++++|.+++.|+++++++|+++.+|++|++++|.||+++++|||+|++||||||++||+||++||+|++.++
T Consensus        81 ~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~  160 (288)
T 3nzj_F           81 LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGY  160 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEB
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCChHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEe-CCCCcEEeCCHHHHHHHH
Q 025676          161 FGAAIGKGRQAAKTEIEKL---KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCD-ESNRQHQKVPDELLEEAK  236 (249)
Q Consensus       161 ~~~a~G~~~~~~~~~Le~~---~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~-~~~~~~~~~~~~ei~~~~  236 (249)
                      +++|+|+++++++++||+.   |+++||++||++++++||..+.+++..+++++||++|++ ++++.++.+|++++++..
T Consensus       161 ~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~  240 (288)
T 3nzj_F          161 KGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI  240 (288)
T ss_dssp             SEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHHH
T ss_pred             CEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHHH
Confidence            9999999999999999999   999999999999999999999999878889999999998 667789999999999999


Q ss_pred             HHHHHhhhhccC
Q 025676          237 AAARAALEEMDA  248 (249)
Q Consensus       237 ~~~~~~~~~~~~  248 (249)
                      +.++.++|+.|.
T Consensus       241 ~~~~~~~~~~~~  252 (288)
T 3nzj_F          241 DFAQKEINGDDD  252 (288)
T ss_dssp             HHHHHHTC----
T ss_pred             HHHHHHhhcccc
Confidence            999999998764
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Back     alignment and structure
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Back     alignment and structure
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Back     alignment and structure
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Back     alignment and structure
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Back     alignment and structure
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Back     alignment and structure
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Back     alignment and structure
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Back     alignment and structure
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Back     alignment and structure
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Back     alignment and structure
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Back     alignment and structure
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Back     alignment and structure
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Back     alignment and structure
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Back     alignment and structure
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Back     alignment and structure
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Back     alignment and structure
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Back     alignment and structure
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Back     alignment and structure
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Back     alignment and structure
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Back     alignment and structure
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5 Back     alignment and structure
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Back     alignment and structure
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Back     alignment and structure
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Back     alignment and structure
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Back     alignment and structure
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Back     alignment and structure
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Back     alignment and structure
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Back     alignment and structure
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Back     alignment and structure
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Back     alignment and structure
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Back     alignment and structure
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2 Back     alignment and structure
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Back     alignment and structure
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Back     alignment and structure
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Back     alignment and structure
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Back     alignment and structure
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Back     alignment and structure
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Back     alignment and structure
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Back     alignment and structure
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Back     alignment and structure
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Back     alignment and structure
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Back     alignment and structure
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Back     alignment and structure
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Back     alignment and structure
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 249
d1irug_245 d.153.1.4 (G:) Proteasome alpha subunit (non-catal 1e-92
d1rypg_244 d.153.1.4 (G:) Proteasome alpha subunit (non-catal 4e-82
d1irue_234 d.153.1.4 (E:) Proteasome alpha subunit (non-catal 3e-67
d1irua_244 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 5e-66
d1j2pa_243 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 2e-65
d1iruc_250 d.153.1.4 (C:) Proteasome alpha subunit (non-catal 8e-65
d1rypf_233 d.153.1.4 (F:) Proteasome alpha subunit (non-catal 2e-64
d1iruf_238 d.153.1.4 (F:) Proteasome alpha subunit (non-catal 3e-63
d1rypc_244 d.153.1.4 (C:) Proteasome alpha subunit (non-catal 4e-63
d1rypb_250 d.153.1.4 (B:) Proteasome alpha subunit (non-catal 4e-63
d1yara1221 d.153.1.4 (A:13-233) Proteasome alpha subunit (non 2e-60
d1irud_243 d.153.1.4 (D:) Proteasome alpha subunit (non-catal 6e-60
d1rype_242 d.153.1.4 (E:) Proteasome alpha subunit (non-catal 1e-59
d1irub_233 d.153.1.4 (B:) Proteasome alpha subunit (non-catal 1e-59
d1rypd_241 d.153.1.4 (D:) Proteasome alpha subunit (non-catal 1e-56
d1rypa_243 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 2e-56
d1q5qa_227 d.153.1.4 (A:) Proteasome alpha subunit (non-catal 4e-35
d1yarh1203 d.153.1.4 (H:1-203) Proteasome beta subunit (catal 2e-29
d1ryp1_222 d.153.1.4 (1:) Proteasome beta subunit (catalytic) 3e-29
d1rypi_222 d.153.1.4 (I:) Proteasome beta subunit (catalytic) 2e-28
d1irui_220 d.153.1.4 (I:) Proteasome beta subunit (catalytic) 5e-28
d1j2qh_202 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 1e-27
d1irul_201 d.153.1.4 (L:) Proteasome beta subunit (catalytic) 2e-27
d1iruh_202 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 4e-27
d1ryp2_233 d.153.1.4 (2:) Proteasome beta subunit (catalytic) 2e-25
d1ryph_205 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 3e-24
d1rypk_198 d.153.1.4 (K:) Proteasome beta subunit (catalytic) 4e-24
d1rypl_212 d.153.1.4 (L:) Proteasome beta subunit (catalytic) 8e-24
d1iru2_217 d.153.1.4 (2:) Proteasome beta subunit (catalytic) 3e-23
d1q5qh_224 d.153.1.4 (H:) Proteasome beta subunit (catalytic) 1e-21
d1iruk_199 d.153.1.4 (K:) Proteasome beta subunit (catalytic) 7e-21
d1rypj_204 d.153.1.4 (J:) Proteasome beta subunit (catalytic) 7e-21
d1iruj_204 d.153.1.4 (J:) Proteasome beta subunit (catalytic) 1e-20
d1iru1_213 d.153.1.4 (1:) Proteasome beta subunit (catalytic) 3e-17
d1m4ya_171 d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma 1e-08
d2z3ba1180 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus 8e-08
d1g3ka_173 d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i 1e-05
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  271 bits (693), Expect = 1e-92
 Identities = 154/245 (62%), Positives = 189/245 (77%), Gaps = 1/245 (0%)

Query: 2   SSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP 61
           SSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+   
Sbjct: 1   SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE 60

Query: 62  GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVH 121
           GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH
Sbjct: 61  GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVH 120

Query: 122 LCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
             TLY  +RPFGC  +LG Y  +   QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL+
Sbjct: 121 AYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 180

Query: 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240
           + EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP ++ EEA+  A+
Sbjct: 181 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240

Query: 241 AALEE 245
            +L+E
Sbjct: 241 ESLKE 245
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244 Back     information, alignment and structure
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243 Back     information, alignment and structure
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250 Back     information, alignment and structure
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Back     information, alignment and structure
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238 Back     information, alignment and structure
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250 Back     information, alignment and structure
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221 Back     information, alignment and structure
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243 Back     information, alignment and structure
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242 Back     information, alignment and structure
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233 Back     information, alignment and structure
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241 Back     information, alignment and structure
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243 Back     information, alignment and structure
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227 Back     information, alignment and structure
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203 Back     information, alignment and structure
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220 Back     information, alignment and structure
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201 Back     information, alignment and structure
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202 Back     information, alignment and structure
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Back     information, alignment and structure
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 Back     information, alignment and structure
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198 Back     information, alignment and structure
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 Back     information, alignment and structure
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224 Back     information, alignment and structure
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199 Back     information, alignment and structure
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 Back     information, alignment and structure
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 Back     information, alignment and structure
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171 Back     information, alignment and structure
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 Back     information, alignment and structure
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
d1irug_245 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1j2pa_243 Proteasome alpha subunit (non-catalytic) {Archaeon 100.0
d1rypg_244 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1iruc_250 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1irua_244 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypb_250 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1irue_234 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1rypc_244 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rypf_233 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1iruf_238 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1irud_243 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1yara1221 Proteasome alpha subunit (non-catalytic) {Archaeon 100.0
d1rypd_241 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rype_242 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1rypa_243 Proteasome alpha subunit (non-catalytic) {Baker's 100.0
d1irub_233 Proteasome alpha subunit (non-catalytic) {Cow (Bos 100.0
d1q5qa_227 Proteasome alpha subunit (non-catalytic) {Rhodococ 100.0
d1yarh1203 Proteasome beta subunit (catalytic) {Archaeon Ther 100.0
d1irul_201 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1ryph_205 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1j2qh_202 Proteasome beta subunit (catalytic) {Archaeon Arch 100.0
d1rypl_212 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1rypk_198 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1iruh_202 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1irui_220 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1ryp2_233 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1rypi_222 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1iru2_217 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1q5qh_224 Proteasome beta subunit (catalytic) {Rhodococcus e 100.0
d1iruj_204 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1rypj_204 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1ryp1_222 Proteasome beta subunit (catalytic) {Baker's yeast 100.0
d1iru1_213 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d1iruk_199 Proteasome beta subunit (catalytic) {Cow (Bos taur 100.0
d2z3ba1180 HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14 99.91
d1m4ya_171 HslV (ClpQ) protease {Thermotoga maritima [TaxId: 99.89
d1g3ka_173 HslV (ClpQ) protease {Haemophilus influenzae [TaxI 99.87
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-66  Score=441.54  Aligned_cols=244  Identities=64%  Similarity=1.013  Sum_probs=233.9

Q ss_pred             CCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecC
Q 025676            2 SSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGL   81 (249)
Q Consensus         2 ~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~   81 (249)
                      ||++++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.+++..++.+|||+|++|++|+++|.
T Consensus         1 ~~~~~~yd~~~t~Fsp~Grl~QvEYa~~av~~G~t~VGik~~dgVvlaad~~~~~~~~~~~~~~Ki~~I~~~i~~~~sG~   80 (245)
T d1irug_           1 SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL   80 (245)
T ss_dssp             CCCCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred             CCCccccCCCCceECCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEeccccccccccCccceEEEcCCCEEEEeccC
Confidence            89999999999999999999999999999999999999999999999999999998887777899999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeee
Q 025676           82 AADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRY  160 (249)
Q Consensus        82 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~  160 (249)
                      .+|++.+++.++.++..|++++|.+++++.+++++++.+|.||+++++|||+|++||||+|+ +||+||++||+|++.++
T Consensus        81 ~~D~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp~Ly~iDp~G~~~~~  160 (245)
T d1irug_          81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGY  160 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEB
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCceEEEEcCCceEEee
Confidence            99999999999999999999999999999999999999999999999999999999999996 68999999999999999


Q ss_pred             cEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHH
Q 025676          161 FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR  240 (249)
Q Consensus       161 ~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~  240 (249)
                      +++|+|++++.++++||+.|+++||++||++++++||+.+.+++..+.++|||++|++++++.++++++|..+++.+.+.
T Consensus       161 ~~~a~G~gs~~a~~~Le~~~~~dmt~eea~~l~~~~l~~~~~~~~~~~~~iei~~v~~~~~~~~~~~~~e~~~~~~~~~~  240 (245)
T d1irug_         161 WGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK  240 (245)
T ss_dssp             SEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred             eEEEECCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEecCCCeEEEChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887777788999999988777889999999999999998


Q ss_pred             Hhhhh
Q 025676          241 AALEE  245 (249)
Q Consensus       241 ~~~~~  245 (249)
                      +++|+
T Consensus       241 ~~~~~  245 (245)
T d1irug_         241 ESLKE  245 (245)
T ss_dssp             HHHCC
T ss_pred             HhhcC
Confidence            88874
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure