Citrus Sinensis ID: 025719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVKAKRV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccHHHHcccccHHHEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
maereenpaeppmekvsekihdhdsssssssdsdneepaaqssvkADIYRLfgrerpvhqvfgggkpaDVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHtfikkappcipevhlpeepflQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLyekyedkidPLAEKAMIEIKKQYAVFDAkvlskipvkakrv
Flexible Loop (DISEMBL)
maereenpaeppmekvseKIHDHDsssssssdsdneepAAQSSVKADIYRLFGRerpvhqvfgggkPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYavfdakvlskipvkakrv
Low Complexity Region (SEG)
MAEREENPAEPPMEKVSEKIhdhdsssssssdsdNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTlilalailflWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVKAKRV
Disordered region (IsUnstruct)
*********************************************ADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKI*******
Disordered Region (DISOPRED)
**************************************************************GGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVK****
Disordered Region (DISEMBL)
******************************************SVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVKAKRV
Disordered Region (DISPRO)
**********************************************DIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPV*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVKAKRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
O82352	255	Reticulon-like protein B5	yes	no	0.971	0.949	0.680	2e-89
Q9SH59	255	Reticulon-like protein B3	no	no	0.971	0.949	0.677	9e-84
Q9SUR3	275	Reticulon-like protein B1	no	no	0.943	0.854	0.654	1e-83
Q6DBN4	253	Reticulon-like protein B6	no	no	0.963	0.948	0.652	5e-82
Q9SUT9	271	Reticulon-like protein B2	no	no	0.939	0.863	0.651	4e-81
Q9FFS0	257	Reticulon-like protein B4	no	no	0.959	0.929	0.626	1e-78
Q9M145	244	Reticulon-like protein B7	no	no	0.823	0.840	0.562	8e-62
Q9SS37	247	Reticulon-like protein B8	no	no	0.947	0.955	0.419	4e-53
Q9LJQ5	225	Reticulon-like protein B9	no	no	0.867	0.96	0.391	3e-46
Q8GYH6	226	Reticulon-like protein B1	no	no	0.867	0.955	0.336	2e-33

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/247 (68%), Positives = 196/247 (79%), Gaps = 5/247 (2%)

Query: 1   MAEREENPA---EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MAE  E      E  MEK+SEKIH HDSSSSS S+   E+P + S+VKA IYR+FGRE+P
Sbjct: 1   MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEY--EKPDSPSAVKAKIYRMFGREKP 58

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH+V GGGKPADVFLWR+KK+S  VLG ATAIWVLFEL EYHLL+L+CH  ILAL  LFL
Sbjct: 59  VHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFL 118

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIA 177
           W+NAHT I K  P IPE+H+PEE FL VAS+ R ELN AF +LRSIA GRDLK FLM + 
Sbjct: 119 WSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVV 178

Query: 178 ALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAK 237
            LW++SVVG+W NFLTL YI  V+LH VP+LYEK+EDK+DPLAEKAM E++KQY VFD K
Sbjct: 179 GLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEK 238

Query: 238 VLSKIPV 244
           VLSKIP+
Sbjct: 239 VLSKIPI 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  309 bits (792), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 166/245 (67%), Positives = 192/245 (78%), Gaps = 3/245 (1%)

Query: 1   MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQ 60
           MAE E    E  MEK+SEKIH HD SSSSSSDSD+++ +A  S+K  IYRLFGRE+P+H+
Sbjct: 1   MAE-EHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSA--SLKTKIYRLFGREQPLHK 57

Query: 61  VFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWAN 120
           +FGGGKPAD+FLWRNKK+S GVLG AT  W+LFEL EY+LLTL  H  ILALA+LFLW++
Sbjct: 58  LFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSS 117

Query: 121 AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALW 180
           A TFI K+P  IPEVH+PE+  LQ+AS  RIE+N  F VLR IASGRDLK FL+ IA LW
Sbjct: 118 ASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLW 177

Query: 181 VLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLS 240
           VLS VGS CNFLTL YIA VLL  +PVLYEKYEDK+D   EKAM EIKKQY  FD KVLS
Sbjct: 178 VLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLS 237

Query: 241 KIPVK 245
           K+  K
Sbjct: 238 KVMSK 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  309 bits (791), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/243 (65%), Positives = 192/243 (79%), Gaps = 8/243 (3%)

Query: 10  EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKAD--------IYRLFGRERPVHQV 61
           E  M+K+SEKIH    SSSSSS SD+E+   ++   +         +YRLFGRE+PVH+V
Sbjct: 24  ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKV 83

Query: 62  FGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANA 121
            GGGKPAD+F+W+NKK+S GVLGGATA WV+FEL EYHLLTL+CH +I+ LA+LFLW+NA
Sbjct: 84  LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query: 122 HTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWV 181
             FI K+PP IPEVH+PEEP LQ+AS  RIE+N  F+ LR IASGRDLK FL+AIA LWV
Sbjct: 144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203

Query: 182 LSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSK 241
           LS++G   NFLTL YIALVLL  VP+ Y+KYEDK+DPL EKAMIE+KKQYAV D KVLSK
Sbjct: 204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263

Query: 242 IPV 244
           IP+
Sbjct: 264 IPL 266

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  303 bits (777), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 158/242 (65%), Positives = 192/242 (79%), Gaps = 2/242 (0%)

Query: 3   EREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVF 62
           E+  +  E  MEK+++KIHD    SSSSSDS++E+P + S++KA IYRLFGRE+PVH+V 
Sbjct: 6   EKSMHKEESLMEKIADKIHD--HDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVL 63

Query: 63  GGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAH 122
           GGG PADVFLWR+KK+SA VLG ATAIWVLFEL EYH L+LVCH LI ALA LFL +NAH
Sbjct: 64  GGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAH 123

Query: 123 TFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVL 182
            F+ K PP IPE+H+ EE FL + SA R ELN AF +LRSIA GRDLK FLM +  LW++
Sbjct: 124 AFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWII 183

Query: 183 SVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKI 242
           SVVG+W NFLTL YI  V+LH VP+LYEK+EDK+DP+AEK + E+KK Y VFD KVLSK+
Sbjct: 184 SVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKL 243

Query: 243 PV 244
           PV
Sbjct: 244 PV 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  300 bits (769), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 155/238 (65%), Positives = 182/238 (76%), Gaps = 4/238 (1%)

Query: 10  EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKAD----IYRLFGRERPVHQVFGGG 65
           E  MEK+SEKIH    SSSSSS  D  E  + SS        +YRLFGRERPVH+V GGG
Sbjct: 24  ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83

Query: 66  KPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFI 125
           KPAD+F+W++KK+S GV GGAT  WVLFEL EYHLLTL+CH +I+ALA+LFLW+NA  FI
Sbjct: 84  KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143

Query: 126 KKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVV 185
            K+PP IPEVH+PEEP LQ+AS  RIE+N   + LR IASGRD+K FL AIA LWVLS++
Sbjct: 144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203

Query: 186 GSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIP 243
           G   +FLTL YIALVLL  VP+ Y+KYEDK+D   EKAM E+KKQYAV DAKV SKIP
Sbjct: 204 GGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIP 261

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  293 bits (749), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 151/241 (62%), Positives = 179/241 (74%), Gaps = 2/241 (0%)

Query: 10  EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKAD--IYRLFGRERPVHQVFGGGKP 67
           E  +EK+ EKIH H  SSS S   D+++  + SS      IYRLFGRE+PVH+V GGGKP
Sbjct: 9   ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68

Query: 68  ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKK 127
           AD+FLWRNKK+S GVLG  TA WVLFELFEYHLL  +CH  I ALA LFLW+NA TFI K
Sbjct: 69  ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128

Query: 128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGS 187
           + P IPEVH+PE+P LQ+ S  RIE+N    +LR+IASG+D+K F++ IA LWVLS++GS
Sbjct: 129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188

Query: 188 WCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVKAK 247
             NFLTLFY A VLL  +PVLYEKYEDK+D   EKAM EIKKQYAV D KVL K+  K  
Sbjct: 189 CYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIP 248

Query: 248 R 248
           R
Sbjct: 249 R 249

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3 SV=2

 Score =  236 bits (603), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 117/208 (56%), Positives = 155/208 (74%), Gaps = 3/208 (1%)

Query: 36  EEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFEL 95
           E+P +   + A IYR+FGRERP+H V GGGKPADV LWR+KK++ G+L   T IW+LF  
Sbjct: 39  EKPDSPVPINAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGF 98

Query: 96  FEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNH 155
               LLT +C   IL L + FLW+NA   + K+P  + ++++PE+P LQ ASA   ELN 
Sbjct: 99  GGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNC 155

Query: 156 AFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDK 215
           AFA LRSIA  RD+K+F+MA+  LW++SV+G+W +FL+L YI  VL+H VP+LYEKYED+
Sbjct: 156 AFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDE 215

Query: 216 IDPLAEKAMIEIKKQYAVFDAKVLSKIP 243
           IDP+AEKA+IE+KK Y VF+AK LSKIP
Sbjct: 216 IDPIAEKAVIEMKKHYQVFEAKFLSKIP 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1

 Score =  207 bits (528), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/236 (41%), Positives = 144/236 (61%)

Query: 8   PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKP 67
           P +  +E V   + D+ + +   +   +     + SV +   RLF R++P+H V GGGK 
Sbjct: 2   PDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSSRFNRLFDRQKPIHHVLGGGKS 61

Query: 68  ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKK 127
           ADV LWRNKKISA VL GATAIWVLFE   +H L+LVC+ L+L +   F+W+NA  F+ +
Sbjct: 62  ADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNR 121

Query: 128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGS 187
           +   +P + LP++ F +V  A   E+N     L+ +A   +LK FLMA+  LWV ++VGS
Sbjct: 122 SQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGS 181

Query: 188 WCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIP 243
            CNFLT+ YI  V  H +PVLYE+YED++D   +  +++    Y   D   LS+IP
Sbjct: 182 CCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIP 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 136/225 (60%), Gaps = 9/225 (4%)

Query: 27  SSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGA 86
           + SSSDS++E    +++      +LF R+R +H +FGGGK AD+ LWR  KI+A ++ G 
Sbjct: 5   TGSSSDSEDERTIHKTT------KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGV 58

Query: 87  TAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVA 146
           + +W L E+ EY+ +TL+CH  + ++   F+W+ A  F+    P IPEV L E  F Q+A
Sbjct: 59  SILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLA 118

Query: 147 SAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVP 206
            +F +  N     L  +A GRD   F +   +L+++S++G++ NF+ L +I  V +  +P
Sbjct: 119 RSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLP 178

Query: 207 VLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIP---VKAKR 248
           V+YE YED +D  A K M ++KK Y   D  VLSKIP   VK K+
Sbjct: 179 VMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNKK 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 24  DSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVL 83
           DS S    D D       SS     YRL GR+  VHQ  GGGK AD+ LWR + +S GV+
Sbjct: 2   DSLSDIDGDFDGRNEGGSSSD----YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVI 57

Query: 84  GGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFL 143
             +T  W++FE      L++    L++ + I F+ A    F  +    +PE+ L EE   
Sbjct: 58  IISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVN 117

Query: 144 QVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLH 203
             A++FRI+LNH   +   +  G D + F   +  LW+LS +GS+ +  TL YI  +L  
Sbjct: 118 SAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSV 177

Query: 204 IVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIP 243
            +P LY KY+ K+D         +   Y + D  V+S++ 
Sbjct: 178 TIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLS 217

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
255541732	253	conserved hypothetical protein [Ricinus	1.0	0.984	0.774	1e-102
224127784	251	predicted protein [Populus trichocarpa]	0.995	0.988	0.734	1e-96
118485241	251	unknown [Populus trichocarpa]	0.995	0.988	0.730	4e-96
255537629	260	conserved hypothetical protein [Ricinus	0.963	0.923	0.75	7e-94
359474299	256	PREDICTED: uncharacterized protein LOC10	0.959	0.933	0.711	1e-93
297742260	252	unnamed protein product [Vitis vinifera]	0.959	0.948	0.711	2e-93
359489676	255	PREDICTED: reticulon-like protein B1 iso	0.971	0.949	0.719	2e-93
358248600	257	uncharacterized protein LOC100793862 [Gl	0.975	0.945	0.748	1e-91
358248996	259	uncharacterized protein LOC100778096 [Gl	0.979	0.942	0.741	3e-91
192910708	254	24 kDa seed maturation protein [Elaeis g	0.971	0.952	0.723	8e-91

>gi|255541732|ref|XP_002511930.1| conserved hypothetical protein [Ricinus communis] gi|223549110|gb|EEF50599.1| conserved hypothetical protein [Ricinus communis]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/253 (77%), Positives = 215/253 (84%), Gaps = 4/253 (1%)

Query: 1   MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDN-EEPAAQSSVKADIYRLFGRERPVH 59
           MAE  E+P E  MEK+SEKIH HDSSSSS S+SD+ ++P + SSVKA I+RLFGRERPVH
Sbjct: 1   MAEHPESPIESVMEKISEKIHAHDSSSSSDSESDSEKKPTSPSSVKAKIFRLFGRERPVH 60

Query: 60  QVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWA 119
            V GGGKPADVFLWRNKKISA VLG ATAIW+LFEL EYHLLTLVCH  IL LAILFLW+
Sbjct: 61  HVLGGGKPADVFLWRNKKISASVLGTATAIWILFELIEYHLLTLVCHISILTLAILFLWS 120

Query: 120 NAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAAL 179
           NAHTFI K PP IP+VH+PEEP LQVASA  +E+NH FAVLRSIASG+DLK FL+ IAA 
Sbjct: 121 NAHTFINKTPPRIPQVHIPEEPVLQVASALTMEINHGFAVLRSIASGKDLKKFLVVIAAF 180

Query: 180 WVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVL 239
           W LS+VG WCNFLTLFYI  VLLH VPVLYEKYEDK+DP AEKAMIEIKKQYA+FDAKVL
Sbjct: 181 WALSIVGCWCNFLTLFYITFVLLHTVPVLYEKYEDKVDPFAEKAMIEIKKQYAMFDAKVL 240

Query: 240 SKIPV---KAKRV 249
           SKIPV   KAKRV
Sbjct: 241 SKIPVGALKAKRV 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127784|ref|XP_002320163.1| predicted protein [Populus trichocarpa] gi|118481592|gb|ABK92738.1| unknown [Populus trichocarpa] gi|222860936|gb|EEE98478.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/252 (73%), Positives = 212/252 (84%), Gaps = 4/252 (1%)

Query: 1   MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQ 60
           MAE+ ENP E  M K+SEKIH H+SSSS S     ++     SVK  I+RLFGRE+PVH+
Sbjct: 1   MAEQSENPIESVMGKISEKIH-HESSSSDSESDSEKKSYPSESVKDKIWRLFGREKPVHR 59

Query: 61  VFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWAN 120
           V GGGKPADVFLWRNKK+SAGVLG ATAIWVLFEL EY+LLTLVCH LIL+LA+ FLW+N
Sbjct: 60  VLGGGKPADVFLWRNKKVSAGVLGFATAIWVLFELVEYNLLTLVCHILILSLALSFLWSN 119

Query: 121 AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALW 180
           AH+FI K+PP IP+VHLPEEP LQVASA  +E+N AF VLRSIA+G+DLK FL+ IA LW
Sbjct: 120 AHSFINKSPPRIPQVHLPEEPVLQVASALCVEINGAFVVLRSIAAGKDLKKFLIVIAGLW 179

Query: 181 VLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLS 240
           V+S+VGSWC+FLTLFYI  VLLH VPVLYEK+EDKIDPLAEKAMIEIK+QYAVFDAKVLS
Sbjct: 180 VMSIVGSWCHFLTLFYICFVLLHTVPVLYEKFEDKIDPLAEKAMIEIKRQYAVFDAKVLS 239

Query: 241 KIPV---KAKRV 249
           KIPV   KAK+V
Sbjct: 240 KIPVAALKAKKV 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485241|gb|ABK94480.1| unknown [Populus trichocarpa]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 184/252 (73%), Positives = 212/252 (84%), Gaps = 4/252 (1%)

Query: 1   MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQ 60
           MAE+ E+P E  M K+SEKIH H+SSSS S     ++     SVK  I+RLFGRE+PVH+
Sbjct: 1   MAEQSEDPIESVMGKISEKIH-HESSSSDSESDSEKKSYPSESVKDKIWRLFGREKPVHR 59

Query: 61  VFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWAN 120
           V GGGKPADVFLWRNKK+SAGVLG ATAIWVLFEL EY+LLTLVCH LIL+LA+ FLW+N
Sbjct: 60  VLGGGKPADVFLWRNKKVSAGVLGFATAIWVLFELVEYNLLTLVCHILILSLALSFLWSN 119

Query: 121 AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALW 180
           AH+FI K+PP IP+VHLPEEP LQVASA  +E+N AF VLRSIA+G+DLK FL+ IA LW
Sbjct: 120 AHSFINKSPPRIPQVHLPEEPVLQVASALCVEINGAFVVLRSIAAGKDLKKFLIVIAGLW 179

Query: 181 VLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLS 240
           V+S+VGSWC+FLTLFYI  VLLH VPVLYEK+EDKIDPLAEKAMIEIK+QYAVFDAKVLS
Sbjct: 180 VMSIVGSWCHFLTLFYICFVLLHTVPVLYEKFEDKIDPLAEKAMIEIKRQYAVFDAKVLS 239

Query: 241 KIPV---KAKRV 249
           KIPV   KAK+V
Sbjct: 240 KIPVAALKAKKV 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537629|ref|XP_002509881.1| conserved hypothetical protein [Ricinus communis] gi|223549780|gb|EEF51268.1| conserved hypothetical protein [Ricinus communis]

 Score =  349 bits (895), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 183/244 (75%), Positives = 207/244 (84%), Gaps = 4/244 (1%)

Query: 4   REENPAEPPMEKVSEKIHDHDSSSSSSSDSDNE----EPAAQSSVKADIYRLFGRERPVH 59
            EE+  E  M+K+SEKIH HDSSSSS SD+D +     P++ SS+K+ IYRLFGRE+PVH
Sbjct: 7   HEESKGESLMDKISEKIHGHDSSSSSDSDNDEKLKPKSPSSPSSIKSKIYRLFGREKPVH 66

Query: 60  QVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWA 119
            V GGGKPAD+FLWRNKK+SAGVLG ATA+WVLFEL EYHLLTL+CH  ILALAILFLW+
Sbjct: 67  HVLGGGKPADIFLWRNKKVSAGVLGFATAVWVLFELIEYHLLTLICHGFILALAILFLWS 126

Query: 120 NAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAAL 179
           NA TFI K+PP IPEVH+PEEP LQVA+A R+E+N+AFA+LR IASGRDLK FL  IA L
Sbjct: 127 NASTFINKSPPHIPEVHIPEEPVLQVAAALRMEINYAFAILRDIASGRDLKKFLSVIAGL 186

Query: 180 WVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVL 239
           WVLS+VGSWCNFLTLFYIA VLLH VPV YEKYEDK+D  AEKA IEIKKQYAVFDAKVL
Sbjct: 187 WVLSIVGSWCNFLTLFYIAFVLLHTVPVFYEKYEDKVDAFAEKAAIEIKKQYAVFDAKVL 246

Query: 240 SKIP 243
           SKIP
Sbjct: 247 SKIP 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474299|ref|XP_002277080.2| PREDICTED: uncharacterized protein LOC100267262 [Vitis vinifera]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 175/246 (71%), Positives = 203/246 (82%), Gaps = 7/246 (2%)

Query: 1   MAEREEN---PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MA+ E++   P E  MEK+SEKIH HDSSSS S +      ++ S+ KA +YR+FGRE+P
Sbjct: 5   MADHEDSTPSPVESMMEKISEKIHGHDSSSSDSDNEK----SSPSAFKAKVYRIFGREKP 60

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH+V GGGKPADV LWRNKKISAGVLGGATA+W+LFEL EYHLLTLVCH  ILALAILFL
Sbjct: 61  VHKVLGGGKPADVVLWRNKKISAGVLGGATAVWILFELLEYHLLTLVCHCSILALAILFL 120

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIA 177
           W+NA TFI KAPP IPEVH+PE+P LQ ASA RIE+N  F +LR++ASG+DLK FL  IA
Sbjct: 121 WSNATTFINKAPPHIPEVHIPEDPVLQFASALRIEINRGFTLLRNVASGKDLKKFLSVIA 180

Query: 178 ALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAK 237
            LWV+S+VGSWCNFLTLFYI  VLLH VPVLYEKYED +D  AEKAM+EIK+QYAVFDAK
Sbjct: 181 GLWVVSIVGSWCNFLTLFYIVFVLLHTVPVLYEKYEDPVDSFAEKAMVEIKRQYAVFDAK 240

Query: 238 VLSKIP 243
           VLS+IP
Sbjct: 241 VLSRIP 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742260|emb|CBI34409.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/246 (71%), Positives = 203/246 (82%), Gaps = 7/246 (2%)

Query: 1   MAEREEN---PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MA+ E++   P E  MEK+SEKIH HDSSSS S +      ++ S+ KA +YR+FGRE+P
Sbjct: 1   MADHEDSTPSPVESMMEKISEKIHGHDSSSSDSDNEK----SSPSAFKAKVYRIFGREKP 56

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH+V GGGKPADV LWRNKKISAGVLGGATA+W+LFEL EYHLLTLVCH  ILALAILFL
Sbjct: 57  VHKVLGGGKPADVVLWRNKKISAGVLGGATAVWILFELLEYHLLTLVCHCSILALAILFL 116

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIA 177
           W+NA TFI KAPP IPEVH+PE+P LQ ASA RIE+N  F +LR++ASG+DLK FL  IA
Sbjct: 117 WSNATTFINKAPPHIPEVHIPEDPVLQFASALRIEINRGFTLLRNVASGKDLKKFLSVIA 176

Query: 178 ALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAK 237
            LWV+S+VGSWCNFLTLFYI  VLLH VPVLYEKYED +D  AEKAM+EIK+QYAVFDAK
Sbjct: 177 GLWVVSIVGSWCNFLTLFYIVFVLLHTVPVLYEKYEDPVDSFAEKAMVEIKRQYAVFDAK 236

Query: 238 VLSKIP 243
           VLS+IP
Sbjct: 237 VLSRIP 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489676|ref|XP_003633964.1| PREDICTED: reticulon-like protein B1 isoform 2 [Vitis vinifera] gi|359489678|ref|XP_003633965.1| PREDICTED: reticulon-like protein B1 isoform 3 [Vitis vinifera] gi|297745364|emb|CBI40444.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 177/246 (71%), Positives = 204/246 (82%), Gaps = 4/246 (1%)

Query: 1   MAEREENP---AEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MAE  E     +E  +EK+++K+  HDSSSS S    +++PA+ S +KA ++RLFGRE+P
Sbjct: 1   MAEHAEGSGAASESLLEKITDKLQGHDSSSSGSDSD-SDKPASPSPIKAKVFRLFGREKP 59

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH V GGGK ADVFLWRNKKISAGVLGGATA+WVLFEL EYHLLTLVCH LIL+LAILFL
Sbjct: 60  VHTVLGGGKHADVFLWRNKKISAGVLGGATAMWVLFELLEYHLLTLVCHILILSLAILFL 119

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIA 177
           W+NA TFI K+PP IPEVH+PE+PFLQ  +A RIE+N  FAVLR IASGRDLK FL+ IA
Sbjct: 120 WSNATTFINKSPPRIPEVHIPEDPFLQAVNALRIEINCGFAVLRDIASGRDLKKFLIIIA 179

Query: 178 ALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAK 237
            LWVLS++GS CNFLTLFYI  VLLH VPV+YEKYED+IDP AEKA IEIKKQYAVFDAK
Sbjct: 180 GLWVLSILGSCCNFLTLFYITFVLLHTVPVIYEKYEDRIDPFAEKATIEIKKQYAVFDAK 239

Query: 238 VLSKIP 243
           VLSKIP
Sbjct: 240 VLSKIP 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248600|ref|NP_001239653.1| uncharacterized protein LOC100793862 [Glycine max] gi|255641693|gb|ACU21118.1| unknown [Glycine max]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 210/250 (84%), Gaps = 7/250 (2%)

Query: 1   MAEREEN------PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGR 54
           MAE  E+      P E  ++K++EK+H HDSSSSSSSDSD+E+    SSVK  ++RLFGR
Sbjct: 1   MAEEPESTVTTGAPDESLLDKITEKLHGHDSSSSSSSDSDSEK-TVTSSVKDRVFRLFGR 59

Query: 55  ERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAI 114
           ERPVH VFG GKPADV LWRNKKISAGVLGGATA+WVLFEL EYHLLTLVCH LIL LA+
Sbjct: 60  ERPVHSVFGAGKPADVLLWRNKKISAGVLGGATAVWVLFELLEYHLLTLVCHILILLLAV 119

Query: 115 LFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM 174
           LFLW+NAHTFI K+PP IPEVHLPEEPF QVASA RIE+N  FA+L SI SGRDLK FL+
Sbjct: 120 LFLWSNAHTFIHKSPPRIPEVHLPEEPFQQVASALRIEINRGFAILHSIGSGRDLKKFLV 179

Query: 175 AIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVF 234
            IA +W+LS+VG+WCNFLTLFYI  VL H VPVLYEKYEDKIDPLAEKA+IEIKKQY VF
Sbjct: 180 IIAGVWILSIVGNWCNFLTLFYITFVLSHTVPVLYEKYEDKIDPLAEKAVIEIKKQYVVF 239

Query: 235 DAKVLSKIPV 244
           DAKVLSKIP+
Sbjct: 240 DAKVLSKIPL 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248996|ref|NP_001240231.1| uncharacterized protein LOC100778096 [Glycine max] gi|255641248|gb|ACU20901.1| unknown [Glycine max]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 212/251 (84%), Gaps = 7/251 (2%)

Query: 1   MAEREENPA------EPPMEKVSEKIHDHDSSSSSSSDSDNE-EPAAQSSVKADIYRLFG 53
           MAE  E+        E  ++K++EK+H HDSSSSSSSDSD++ E    SSVK  ++RLFG
Sbjct: 1   MAEEPESTVTNGAADESLLDKITEKLHGHDSSSSSSSDSDSDSEKTVTSSVKDKVFRLFG 60

Query: 54  RERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALA 113
           RERPVH VFG GKPADV LWRNKKISAG+LGGATA+WVLFEL EYHLLTLVCH LIL LA
Sbjct: 61  RERPVHSVFGAGKPADVLLWRNKKISAGMLGGATAVWVLFELLEYHLLTLVCHILILLLA 120

Query: 114 ILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFL 173
           +LFLW+NAHTFI K+PP IPE HLPEEPFLQVASA RIE+N  FAVL SI SGRDLK FL
Sbjct: 121 VLFLWSNAHTFIHKSPPRIPEFHLPEEPFLQVASALRIEVNRGFAVLHSIGSGRDLKKFL 180

Query: 174 MAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAV 233
           + IA++W+LS+VG+WCNFLTLFYI  +LLH VPVLYEKY+DKIDPLAEKA+IEIKKQYAV
Sbjct: 181 VVIASVWILSIVGNWCNFLTLFYITFILLHTVPVLYEKYDDKIDPLAEKAVIEIKKQYAV 240

Query: 234 FDAKVLSKIPV 244
           FDAKVLSKIP+
Sbjct: 241 FDAKVLSKIPL 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910708|gb|ACF06462.1| 24 kDa seed maturation protein [Elaeis guineensis]

 Score =  339 bits (869), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 178/246 (72%), Positives = 199/246 (80%), Gaps = 4/246 (1%)

Query: 1   MAEREENPAEPP---MEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MAE  E  +  P   MEK++EK+H  DSSSSS SD++  EP+A SSVKA IYRLFGRE P
Sbjct: 1   MAEHSEEASSKPESLMEKIAEKLHGDDSSSSSDSDNEKSEPSA-SSVKAKIYRLFGREEP 59

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH+V GGGKPADVFLWRNKKISAGVLGGATA+WVLFEL +YHLLTLV H L+L+LAILFL
Sbjct: 60  VHKVLGGGKPADVFLWRNKKISAGVLGGATAVWVLFELLDYHLLTLVGHCLVLSLAILFL 119

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIA 177
           W+NA TFI K PP IPEV +PE+  + VA + R E+N AFAVLR IASGRDLK FL  IA
Sbjct: 120 WSNASTFINKIPPHIPEVSIPEDVAINVALSLRYEINRAFAVLRDIASGRDLKKFLAVIA 179

Query: 178 ALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAK 237
            LWVLS++GS CNFLTLFYI  V LH VPVLYEKYEDK+D  AEKAM EIKKQY VFDAK
Sbjct: 180 GLWVLSILGSCCNFLTLFYILFVTLHTVPVLYEKYEDKVDSFAEKAMAEIKKQYVVFDAK 239

Query: 238 VLSKIP 243
           VLSKIP
Sbjct: 240 VLSKIP 245

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.983	0.960	0.616	1.3e-77
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.943	0.854	0.609	1.3e-75
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.939	0.863	0.596	5.3e-72
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.959	0.929	0.572	9.9e-71
TAIR|locus:2082772	264	AT3G61560 [Arabidopsis thalian	0.951	0.897	0.418	3.9e-44
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.799	0.884	0.400	6.8e-40
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.767	0.950	0.340	2.8e-27
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.702	0.702	0.295	1.5e-26
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.670	0.822	0.323	7.6e-25
TAIR|locus:2046783	206	RTNLB13 "AT2G23640" [Arabidops	0.686	0.830	0.228	9.1e-13

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 156/253 (61%), Positives = 183/253 (72%)

Query:     1 MAEREEN--PAEPP-MEKVSEKIXXXXXXXXXXXXXXNEEPAAQSSVKADIYRLFGRERP 57
             MAE  E   P E   MEK+SEKI               E+P + S+VKA IYR+FGRE+P
Sbjct:     1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEY--EKPDSPSAVKAKIYRMFGREKP 58

Query:    58 VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXX 117
             VH+V GGGKPADVFLWR+KK+S  VLG ATAIWVLFEL EYHLL+L+CH           
Sbjct:    59 VHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFL 118

Query:   118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIA 177
             W+NAHT I K  P IPE+H+PEE FL VAS+ R ELN AF +LRSIA GRDLK FLM + 
Sbjct:   119 WSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVV 178

Query:   178 ALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAK 237
              LW++SVVG+W NFLTL YI  V+LH VP+LYEK+EDK+DPLAEKAM E++KQY VFD K
Sbjct:   179 GLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEK 238

Query:   238 VLSKIPV---KAK 247
             VLSKIP+   KAK
Sbjct:   239 VLSKIPIASLKAK 251

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 148/243 (60%), Positives = 179/243 (73%)

Query:    10 EPPMEKVSEKIXXXXXXXXXXXXXXNEE-------PAA-QSSVKADIYRLFGRERPVHQV 61
             E  M+K+SEKI              +E+       P++  SS+K+ +YRLFGRE+PVH+V
Sbjct:    24 ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKV 83

Query:    62 FGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANA 121
              GGGKPAD+F+W+NKK+S GVLGGATA WV+FEL EYHLLTL+CH           W+NA
Sbjct:    84 LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query:   122 HTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWV 181
               FI K+PP IPEVH+PEEP LQ+AS  RIE+N  F+ LR IASGRDLK FL+AIA LWV
Sbjct:   144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203

Query:   182 LSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSK 241
             LS++G   NFLTL YIALVLL  VP+ Y+KYEDK+DPL EKAMIE+KKQYAV D KVLSK
Sbjct:   204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263

Query:   242 IPV 244
             IP+
Sbjct:   264 IPL 266

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 142/238 (59%), Positives = 170/238 (71%)

Query:    10 EPPMEKVSEKIXXXXXXXXXXXXXX-NEEPAAQSS---VKADIYRLFGRERPVHQVFGGG 65
             E  MEK+SEKI               NE+ ++ SS   +K+ +YRLFGRERPVH+V GGG
Sbjct:    24 ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83

Query:    66 KPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFI 125
             KPAD+F+W++KK+S GV GGAT  WVLFEL EYHLLTL+CH           W+NA  FI
Sbjct:    84 KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143

Query:   126 KKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVV 185
              K+PP IPEVH+PEEP LQ+AS  RIE+N   + LR IASGRD+K FL AIA LWVLS++
Sbjct:   144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203

Query:   186 GSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIP 243
             G   +FLTL YIALVLL  VP+ Y+KYEDK+D   EKAM E+KKQYAV DAKV SKIP
Sbjct:   204 GGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIP 261

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 138/241 (57%), Positives = 168/241 (69%)

Query:    10 EPPMEKVSEKIXXXXXXXXXXXXXXNEEP--AAQSSVKADIYRLFGRERPVHQVFGGGKP 67
             E  +EK+ EKI              +++   ++ SS K+ IYRLFGRE+PVH+V GGGKP
Sbjct:     9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68

Query:    68 ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKK 127
             AD+FLWRNKK+S GVLG  TA WVLFELFEYHLL  +CH           W+NA TFI K
Sbjct:    69 ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128

Query:   128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGS 187
             + P IPEVH+PE+P LQ+ S  RIE+N    +LR+IASG+D+K F++ IA LWVLS++GS
Sbjct:   129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188

Query:   188 WCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVKAK 247
               NFLTLFY A VLL  +PVLYEKYEDK+D   EKAM EIKKQYAV D KVL K+  K  
Sbjct:   189 CYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIP 248

Query:   248 R 248
             R
Sbjct:   249 R 249

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2082772 AT3G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 111/265 (41%), Positives = 150/265 (56%)

Query:     3 EREENPAEPPMEKVSEKIXXXXXXXXXXXXXXNEEPAAQSSVKADIYRLFGRERPVHQVF 62
             E+  +  E  MEK+++KI              +E+P + S++KA IYRLFGRE+PVH+V 
Sbjct:     6 EKSMHKEESLMEKIADKIHDHDSSSSSDSE--HEKPESPSALKAKIYRLFGREKPVHKVL 63

Query:    63 GGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAH 122
             GGG PADVFLWR+KK+SA VLG ATAIWVLFEL EYH L+LVCH            +NAH
Sbjct:    64 GGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAH 123

Query:   123 TFI-------------KKAPP--CIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGR 167
              F+             K+A P  C  + H   +   +++          F+++  +    
Sbjct:   124 AFMNKGTFPYDCFCTEKRAEPGLCYFKEHCLRKGLEEISHELIQSTYETFSIMGFVTR-- 181

Query:   168 DLKSFLMAIAA-LWVLSVVGSWCNFLT-LFYIALVLLHIVPVLYEKYEDKIDPLAEKAMI 225
                S  + I+   W +  +G  C  L  L     V+LH VP+LYEK+EDK+DP+AEK + 
Sbjct:   182 --TSIYIGISGGFWAVDNLG--CGKLVQLLDSCFVVLHTVPMLYEKHEDKVDPVAEKTLK 237

Query:   226 EIKKQYAVFDAKVLSKIPV---KAK 247
             E+KK Y VFD KVLSK+PV   KAK
Sbjct:   238 ELKKHYMVFDEKVLSKLPVASLKAK 262

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 81/202 (40%), Positives = 119/202 (58%)

Query:    50 RLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXX 109
             +LF R+R +H +FGGGK AD+ LWR  KI+A ++ G + +W L E+ EY+ +TL+CH   
Sbjct:    22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASM 81

Query:   110 XXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDL 169
                     W+ A  F+    P IPEV L E  F Q+A +F +  N     L  +A GRD 
Sbjct:    82 TSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDP 141

Query:   170 KSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKK 229
               F +   +L+++S++G++ NF+ L +I  V +  +PV+YE YED +D  A K M ++KK
Sbjct:   142 PLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKK 201

Query:   230 QYAVFDAKVLSKIP---VKAKR 248
              Y   D  VLSKIP   VK K+
Sbjct:   202 LYKKVDTNVLSKIPRGTVKNKK 223

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 65/191 (34%), Positives = 94/191 (49%)

Query:    55 ERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXX 114
             E  VHQ    G  AD+ +W+N++    +LG  T +W LFE   Y     V +T       
Sbjct:     2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61

Query:   115 XXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM 174
                WA +     +  P +P + + EE    VA A R+ +N   AV R I  GR+ K    
Sbjct:    62 LFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFR 121

Query:   175 AIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVF 234
                 LW +S VG++ NFLT+ Y+ +VL  ++P LYE+Y+D ID         I+ QY   
Sbjct:   122 VSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKI 181

Query:   235 DAKVLSKIPVK 245
             D ++L KI  K
Sbjct:   182 DERLLQKIIAK 192

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 52/176 (29%), Positives = 84/176 (47%)

Query:    68 ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKK 127
             AD+ LWR + +S GV+  +T  W++FE      L++               A    F  +
Sbjct:    64 ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 123

Query:   128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFL-MAIAALWVLSVVG 186
                 +PE+ L EE     A++FRI+LNH   +   +  G D + F    +  LW+LS +G
Sbjct:   124 QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIG 183

Query:   187 SWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKI 242
             S+ +  TL YI  +L   +P LY KY+ K+D         +   Y + D  V+S++
Sbjct:   184 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRL 239

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 54/167 (32%), Positives = 91/167 (54%)

Query:    50 RLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXX 109
             +LF R+R +H++ GGG  ADV LWR K +S G++    A W++FE F Y + TL+     
Sbjct:     7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLL 66

Query:   110 XXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDL 169
                     W+ + + + +  P +PE  + E    + +   RI +N    V   IA  RD 
Sbjct:    67 LLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDS 126

Query:   170 KSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKI 216
             + +     +L++LS++GS  +F TL + +++++  VP  YE+YED I
Sbjct:   127 ELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046783 RTNLB13 "AT2G23640" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 39/171 (22%), Positives = 76/171 (44%)

Query:    69 DVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKA 128
             D++LWR KK++   L  +T+ W+L   + +  +T+V             W +    + K 
Sbjct:    18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKV 77

Query:   129 PPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSW 188
              P +  + + EE  ++   + R+ +      +  + +  +   F   +   W+LS +G+ 
Sbjct:    78 EPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNL 137

Query:   189 CNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVL 239
              +F T  +I LV+   VP L+E+Y D+I         + K  Y     K+L
Sbjct:   138 LDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKIL 188

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82352	RTNLE_ARATH	No assigned EC number	0.6801	0.9718	0.9490	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
pfam02453	164	pfam02453, Reticulon, Reticulon	9e-65

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  198 bits (506), Expect = 9e-65
 Identities = 69/164 (42%), Positives = 96/164 (58%), Gaps = 1/164 (0%)

Query: 67  PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIK 126
            AD+ LWR+ K S  V G    IW+LF L  Y LL+++ + L+L LA+ FLW  A   + 
Sbjct: 1   VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60

Query: 127 KAPPC-IPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVV 185
             P    P+V L EE   ++A + R+ +N A   LR +  G DL   L A   LW+LS +
Sbjct: 61  AVPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYL 120

Query: 186 GSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKK 229
           GS  + LTL YI ++L   VP+LYEKY+D+ID   EKA  ++KK
Sbjct: 121 GSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	97.01
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	93.67
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	91.47
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	88.1
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	86.77
COG0053	304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	82.79

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-58  Score=408.56  Aligned_cols=220  Identities=58%  Similarity=0.953  Sum_probs=210.4

Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCccccccCCCcccceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 025719           27 SSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCH  106 (249)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~r~f~r~~p~h~~Lgggk~aDlLlWrn~k~S~~vf~~~t~~w~Lf~~~~ysllslv~~  106 (249)
                      ++|++|+++++.++++ .+++.+|+|+||+|+|+++|||+++|+++|||+|.||.+|++++++|++|+..+|+.+|++|+
T Consensus         4 ~~s~~~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~   82 (230)
T KOG1792|consen    4 LISSSNSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCH   82 (230)
T ss_pred             cccccccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3444488888876666 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcc-CCC--CCC-ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHH
Q 025719          107 TLILALAILFLWANAHTFIKK-APP--CIP-EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVL  182 (249)
Q Consensus       107 ~~ll~l~~lFl~s~~~~~i~k-~~~--~~P-~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~v~L~vl  182 (249)
                      ++++++.+.|.|++...++|| ++|  ..| ++++|||.+++++++++.++|+.+..+|++++|||+++|++++++||++
T Consensus        83 i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~l  162 (230)
T KOG1792|consen   83 ILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWIL  162 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999999999988 666  688 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 025719          183 SVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVKAK  247 (249)
Q Consensus       183 s~vGs~~s~lTLlyi~~v~~fTvP~lYekyqd~ID~~~~k~~~~i~~~y~~~~~kv~skiP~~~k  247 (249)
                      +++|+|||++|++|+|++++||+|++||+|||+||+++++++.+++++|+++|+|+++|||+|++
T Consensus       163 S~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~  227 (230)
T KOG1792|consen  163 SYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPR  227 (230)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999864

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=1.7e-37  Score=258.83  Aligned_cols=163  Identities=37%  Similarity=0.636  Sum_probs=48.3

Q ss_pred             ccceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCCceecChH
Q 025719           67 PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAP------PCIPEVHLPEE  140 (249)
Q Consensus        67 ~aDlLlWrn~k~S~~vf~~~t~~w~Lf~~~~ysllslv~~~~ll~l~~lFl~s~~~~~i~k~~------~~~P~~~isee  140 (249)
                      ++|+++||||+.||.+|++++++|+++++.++|++|++|+++++.+++.+++....+++++.+      ++.++.++|||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            589999999999999999999999999999999999999999999999999888888777755      34447899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 025719          141 PFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLA  220 (249)
Q Consensus       141 ~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~lYekyqd~ID~~~  220 (249)
                      .++++++.+.+.+|..+..+|+++.++|++.+++++++||+++++|+++|++||+|++++++||+|.+|++||++||+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~  160 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV  160 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 025719          221 EKAMIEIKK  229 (249)
Q Consensus       221 ~k~~~~i~~  229 (249)
                      ++++++++|
T Consensus       161 ~~~~~~~~k  169 (169)
T PF02453_consen  161 AKVKEKVKK  169 (169)
T ss_dssp             ---------
T ss_pred             HHHHHHhcC
Confidence            998887764

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=97.01  E-value=0.013  Score=59.35  Aligned_cols=135  Identities=16%  Similarity=0.145  Sum_probs=89.9

Q ss_pred             ccceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhhccC--------CCC-CC-cee
Q 025719           67 PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKA--------PPC-IP-EVH  136 (249)
Q Consensus        67 ~aDlLlWrn~k~S~~vf~~~t~~w~Lf~~~~ysllslv~~~~ll~l~~lFl~s~~~~~i~k~--------~~~-~P-~~~  136 (249)
                      +.++..|+||.+|..+++..+.+.+ -.|.+|     +.-..++.+++..+|.....-.++.        ||+ +. +-.
T Consensus       506 ~~~l~~We~P~kt~~Fl~~~~~iI~-r~wl~Y-----~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEqi  579 (683)
T PF04842_consen  506 LQKLASWEEPLKTLVFLALFLYIIY-RGWLGY-----IFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQI  579 (683)
T ss_pred             HHHHhhccCcchhHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHHH
Confidence            3588899999999998888765321 123333     2233333444444664433222222        221 11 111


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 025719          137 LPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPV  207 (249)
Q Consensus       137 isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~  207 (249)
                      +.=.....-+.......|-++-++|.|.+.+.++.+-+|++.|..++.+-.++.+--++...++-.||-..
T Consensus       580 lalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~  650 (683)
T PF04842_consen  580 LALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRES  650 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            11122233345566778999999999999999999999999999999999999999999999999998643

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.67  E-value=0.29  Score=43.79  Aligned_cols=81  Identities=16%  Similarity=0.170  Sum_probs=66.9

Q ss_pred             HHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc-----------------------hhh
Q 025719          159 VLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKY-----------------------EDK  215 (249)
Q Consensus       159 ~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~lYeky-----------------------qd~  215 (249)
                      ...|++.+||.+.++.+..+..++..+-.+++..++..++.+++++++.+|..+                       |+.
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            467899999999999999999999999999999999999999999888877765                       566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 025719          216 IDPLAEKAMIEIKKQYAVFDAKVL  239 (249)
Q Consensus       216 ID~~~~k~~~~i~~~y~~~~~kv~  239 (249)
                      ++++...+..+++...+++.+-.+
T Consensus       122 ~~~~a~~~~~~in~~l~~l~~ia~  145 (230)
T KOG1792|consen  122 VLALASSLRVEINQALSELRDIAL  145 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777888888888877777665433

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=91.47  E-value=2.9  Score=39.11  Aligned_cols=22  Identities=18%  Similarity=0.176  Sum_probs=17.3

Q ss_pred             ccceecccccchhHHHHHHHHH
Q 025719           67 PADVFLWRNKKISAGVLGGATA   88 (249)
Q Consensus        67 ~aDlLlWrn~k~S~~vf~~~t~   88 (249)
                      +.++++|+|+..+-.++...+.
T Consensus        32 vl~il~W~~p~~t~~~L~l~t~   53 (359)
T PF06398_consen   32 VLRILTWTNPDYTLSFLLLYTF   53 (359)
T ss_pred             HHHeEEeCCCCcchHHHHHHHH
Confidence            4679999999988777666654

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=88.10  E-value=3.3  Score=35.02  Aligned_cols=66  Identities=17%  Similarity=0.072  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 025719          147 SAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKY  212 (249)
Q Consensus       147 ~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~v~L~vls~vGs~~s~lTLlyi~~v~~fTvP~lYeky  212 (249)
                      +.+...+......++.++..+|...+..+++++++.+++--+..+..++.+..+-.++=|.+-.++
T Consensus        72 Q~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~  137 (156)
T PF08372_consen   72 QNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL  137 (156)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence            334445566668899999999999999999999999999888888888877777777777765533

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=86.77  E-value=0.12  Score=43.55  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=33.2

Q ss_pred             ccccccccccCCCCCCccccccC-----CCcccceecccccchhHHHHHHHHHHHHHH
Q 025719           41 QSSVKADIYRLFGRERPVHQVFG-----GGKPADVFLWRNKKISAGVLGGATAIWVLF   93 (249)
Q Consensus        41 ~~~~~~~~~r~f~r~~p~h~~Lg-----ggk~aDlLlWrn~k~S~~vf~~~t~~w~Lf   93 (249)
                      +.+++.+..|+-.--.-+-.++|     |.++..++.||||..|++...+.++.-+.+
T Consensus        54 ~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvl  111 (156)
T PF08372_consen   54 PDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVL  111 (156)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHH
Confidence            34566555555321122334444     446889999999999999887776543333

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=82.79  E-value=26  Score=32.42  Aligned_cols=120  Identities=19%  Similarity=0.267  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCce--------ecChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHH
Q 025719          100 LLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEV--------HLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKS  171 (249)
Q Consensus       100 llslv~~~~ll~l~~lFl~s~~~~~i~k~~~~~P~~--------~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~  171 (249)
                      +.+++.-++++..++..+|.....+++..+++.|..        .+..+.+.++...+...+|.-...--..=.--|...
T Consensus        83 l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~t  162 (304)
T COG0053          83 LASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLT  162 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHH
Confidence            344444444444555556666666666443333311        111222333333333333332211111111126777


Q ss_pred             HHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHH-HHHHhchhhHHHHH
Q 025719          172 FLMAIAALWVLSVVG-SWCNFLTLFYIALVLLHIVP-VLYEKYEDKIDPLA  220 (249)
Q Consensus       172 ~lkv~v~L~vls~vG-s~~s~lTLlyi~~v~~fTvP-~lYekyqd~ID~~~  220 (249)
                      ++.+++++- ..+.| -|.....=+.+++..+.+.- .++|.....+|+-+
T Consensus       163 s~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~  212 (304)
T COG0053         163 SLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAAL  212 (304)
T ss_pred             HHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence            777777777 77777 55666665666665555544 55666666666433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 41/267 (15%), Positives = 79/267 (29%), Gaps = 91/267 (34%)

Query: 4   REENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVH---- 59
           +  N  E  +E + + ++  D + +S SD  +       S++A++ RL   +   +    
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 60  ----------QVFGGG-KPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTL 108
                       F    K   +   R K+++  +    T    L    ++H +TL   T 
Sbjct: 250 LLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISL----DHHSMTL---TP 300

Query: 109 ILALAILFLWANAHTFIKKAPPCIPEVHLPEE-----PFL--QVASAFRIELNHAFAVLR 161
               ++L  + +                LP E     P     +A + R  L        
Sbjct: 301 DEVKSLLLKYLD-----------CRPQDLPREVLTTNPRRLSIIAESIRDGLAT------ 343

Query: 162 SIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAE 221
                                     W N+  +      L  I+    E   + ++P   
Sbjct: 344 --------------------------WDNWKHVNCDK--LTTII----ESSLNVLEPA-- 369

Query: 222 KAMIEIKKQY---AVFDAKVLSKIPVK 245
               E +K +   +VF       IP  
Sbjct: 370 ----EYRKMFDRLSVFPPSA--HIPTI 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.04
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.23

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.04  E-value=6.7e-07  Score=65.99  Aligned_cols=58  Identities=22%  Similarity=0.217  Sum_probs=54.2

Q ss_pred             HHHHHHhhhccCCCCCC-------ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHH
Q 025719          117 LWANAHTFIKKAPPCIP-------EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM  174 (249)
Q Consensus       117 l~s~~~~~i~k~~~~~P-------~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lk  174 (249)
                      +|..+.+.++|+...+|       ++.+|+|.++++++.+...+|.++..+|++++++|+..|+|
T Consensus        15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            78888899999998888       88999999999999999999999999999999999988764

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.23  E-value=4.9e-06  Score=58.34  Aligned_cols=49  Identities=22%  Similarity=0.188  Sum_probs=42.4

Q ss_pred             HHHhhhccCCCCCC-------ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 025719          120 NAHTFIKKAPPCIP-------EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRD  168 (249)
Q Consensus       120 ~~~~~i~k~~~~~P-------~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d  168 (249)
                      .+.+.++|+...+|       ++.+|+|.++++++.+...+|.++..+|++++.+|
T Consensus         5 ~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            5 GVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             TTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            34455677766666       88999999999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00